AlfalfaGEDB | Msa0803920

M. sativa cultivar zhongmu-4 / Msa0803920

KEGG: K01414
GO: GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006465 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0031974 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051604 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564
PFAM: PF19310.2

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0803920	XP_003612953.2	98.982	786	8	0	1	786	1	786	0.0	1608

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0803920	sp\|Q94AM1\|OOPDA_ARATH	77.440	789	159	3	15	786	1	787	0.0	1233

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0803920	G7KGF6	98.982	786	8	0	1	786	1	786	0.0	1608

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011850	Msa0803920	0.816799	4.589988e-52	-8.615850e-47
Msa0017940	Msa0803920	0.801460	8.910607e-49	-8.615850e-47
Msa0030000	Msa0803920	0.831486	1.624468e-55	-8.615850e-47
Msa0032120	Msa0803920	0.850343	1.805821e-60	-8.615850e-47
Msa0032400	Msa0803920	0.837564	4.824420e-57	-8.615850e-47
Msa0171780	Msa0803920	0.801198	1.008196e-48	-8.615850e-47
Msa0185550	Msa0803920	0.810606	1.060110e-50	-8.615850e-47
Msa0185700	Msa0803920	0.832714	8.076733e-56	-8.615850e-47
Msa0207000	Msa0803920	0.815832	7.551549e-52	-8.615850e-47
Msa0227510	Msa0803920	0.804727	1.880033e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0803920	MtrunA17_Chr5g0411651	98.982	786	8	0	1	786	1	786	0.0	1608
Msa0803920	MtrunA17_Chr3g0123041	27.787	583	373	17	199	773	153	695	1.64e-54	200
Msa0803920	MtrunA17_Chr3g0079521	24.096	664	453	18	137	784	66	694	4.80e-47	179

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0803920	AT5G65620.2	76.588	803	169	3	1	786	1	801	0.0	1241
Msa0803920	AT5G65620.1	77.440	789	159	3	15	786	1	787	0.0	1233
Msa0803920	AT5G10540.1	81.662	698	128	0	89	786	2	699	0.0	1209
Msa0803920	AT1G67690.1	26.268	552	365	16	233	778	187	702	3.55e-49	185
Msa0803920	AT5G51540.1	24.540	652	438	18	140	771	67	684	2.60e-48	182

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Find 181 sgRNAs with CRISPR-Local

Find 550 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAACTCCTTCAAAAG+AGG	0.528565	5_3:+19403222	None:intergenic
AAAATGCCACCGCTGAGAAT+GGG	0.481659	5_3:-19400502	Msa0803920:CDS
AAAATTTGCAACTGTCGATC+TGG	0.407728	5_3:-19396323	Msa0803920:CDS
AAAATTTGGGGAGAACGTTC+TGG	0.328152	5_3:-19400723	Msa0803920:CDS
AAACTTGGCTTGCTTCCTAC+TGG	0.443627	5_3:+19398633	None:intergenic
AAAGCTCATTACAGATAAGA+AGG	0.504735	5_3:-19400681	Msa0803920:CDS
AACCTTGATGAGTTACCATC+AGG	0.524848	5_3:+19398690	None:intergenic
AACGGAGTGTGGAACCTTCG+TGG	0.487427	5_3:-19402535	Msa0803920:CDS
AAGAAGTGCGTTTAAGAAGA+GGG	0.621610	5_3:+19403406	None:intergenic
AAGACCAAAGGGGACAAGGA+AGG	0.557340	5_3:+19403349	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAGCATGTTTGATATAAGA+AGG	+	chr5_3:19394917-19394936	None:intergenic	30.0%
TCTTATATCAAACATGCTCA+TGG	-	chr5_3:19394917-19394936	Msa0803920:three_prime_UTR	30.0%
AAAACAAACTCCTTCAAAAG+AGG	+	chr5_3:19395182-19395201	None:intergenic	30.0%
TAATCATCTCAAAGCTGTTA+AGG	-	chr5_3:19395951-19395970	Msa0803920:intron	30.0%
ATGTGTAATTGTGCATTTCT+CGG	-	chr5_3:19396044-19396063	Msa0803920:intron	30.0%
GTCATCATATGCTAAAATTG+AGG	+	chr5_3:19396323-19396342	None:intergenic	30.0%
TCAGCTTCTAGATTTATAAC+AGG	-	chr5_3:19396716-19396735	Msa0803920:intron	30.0%
TGGAGAATTGTGAAAAATGA+TGG	-	chr5_3:19396744-19396763	Msa0803920:intron	30.0%
TTAAATTTCCGCTTCATTGT+CGG	-	chr5_3:19396814-19396833	Msa0803920:intron	30.0%
ATCAGTCAAATATCAACAAG+TGG	+	chr5_3:19396856-19396875	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	19394882	19403541	19394882	ID=Msa0803920;Name=Msa0803920
chr5_3	mRNA	19394882	19403541	19394882	ID=Msa0803920-mRNA-1;Parent=Msa0803920;Name=Msa0803920-mRNA-1;_AED=0.07;_eAED=0.07;_QI=6\|1\|1\|1\|1\|1\|17\|168\|786
chr5_3	exon	19394882	19395124	19394882	ID=Msa0803920-mRNA-1:exon:7954;Parent=Msa0803920-mRNA-1
chr5_3	exon	19395316	19395387	19395316	ID=Msa0803920-mRNA-1:exon:7953;Parent=Msa0803920-mRNA-1
chr5_3	exon	19395615	19395680	19395615	ID=Msa0803920-mRNA-1:exon:7952;Parent=Msa0803920-mRNA-1
chr5_3	exon	19395811	19395842	19395811	ID=Msa0803920-mRNA-1:exon:7951;Parent=Msa0803920-mRNA-1
chr5_3	exon	19396188	19396347	19396188	ID=Msa0803920-mRNA-1:exon:7950;Parent=Msa0803920-mRNA-1
chr5_3	exon	19396838	19396955	19396838	ID=Msa0803920-mRNA-1:exon:7949;Parent=Msa0803920-mRNA-1
chr5_3	exon	19397085	19397230	19397085	ID=Msa0803920-mRNA-1:exon:7948;Parent=Msa0803920-mRNA-1
chr5_3	exon	19398617	19398862	19398617	ID=Msa0803920-mRNA-1:exon:7947;Parent=Msa0803920-mRNA-1
chr5_3	exon	19398951	19399058	19398951	ID=Msa0803920-mRNA-1:exon:7946;Parent=Msa0803920-mRNA-1
chr5_3	exon	19399692	19399813	19399692	ID=Msa0803920-mRNA-1:exon:7945;Parent=Msa0803920-mRNA-1
chr5_3	exon	19400147	19400237	19400147	ID=Msa0803920-mRNA-1:exon:7944;Parent=Msa0803920-mRNA-1
chr5_3	exon	19400301	19400531	19400301	ID=Msa0803920-mRNA-1:exon:7943;Parent=Msa0803920-mRNA-1
chr5_3	exon	19400622	19400765	19400622	ID=Msa0803920-mRNA-1:exon:7942;Parent=Msa0803920-mRNA-1
chr5_3	exon	19401316	19401392	19401316	ID=Msa0803920-mRNA-1:exon:7941;Parent=Msa0803920-mRNA-1
chr5_3	exon	19401836	19401959	19401836	ID=Msa0803920-mRNA-1:exon:7940;Parent=Msa0803920-mRNA-1
chr5_3	exon	19402412	19402579	19402412	ID=Msa0803920-mRNA-1:exon:7939;Parent=Msa0803920-mRNA-1
chr5_3	exon	19403155	19403541	19403155	ID=Msa0803920-mRNA-1:exon:7938;Parent=Msa0803920-mRNA-1
chr5_3	five_prime_UTR	19403536	19403541	19403536	ID=Msa0803920-mRNA-1:five_prime_utr;Parent=Msa0803920-mRNA-1
chr5_3	CDS	19403155	19403535	19403155	ID=Msa0803920-mRNA-1:cds;Parent=Msa0803920-mRNA-1
chr5_3	CDS	19402412	19402579	19402412	ID=Msa0803920-mRNA-1:cds;Parent=Msa0803920-mRNA-1
chr5_3	CDS	19401836	19401959	19401836	ID=Msa0803920-mRNA-1:cds;Parent=Msa0803920-mRNA-1
chr5_3	CDS	19401316	19401392	19401316	ID=Msa0803920-mRNA-1:cds;Parent=Msa0803920-mRNA-1
chr5_3	CDS	19400622	19400765	19400622	ID=Msa0803920-mRNA-1:cds;Parent=Msa0803920-mRNA-1
chr5_3	CDS	19400301	19400531	19400301	ID=Msa0803920-mRNA-1:cds;Parent=Msa0803920-mRNA-1
chr5_3	CDS	19400147	19400237	19400147	ID=Msa0803920-mRNA-1:cds;Parent=Msa0803920-mRNA-1
chr5_3	CDS	19399692	19399813	19399692	ID=Msa0803920-mRNA-1:cds;Parent=Msa0803920-mRNA-1
chr5_3	CDS	19398951	19399058	19398951	ID=Msa0803920-mRNA-1:cds;Parent=Msa0803920-mRNA-1
chr5_3	CDS	19398617	19398862	19398617	ID=Msa0803920-mRNA-1:cds;Parent=Msa0803920-mRNA-1
chr5_3	CDS	19397085	19397230	19397085	ID=Msa0803920-mRNA-1:cds;Parent=Msa0803920-mRNA-1
chr5_3	CDS	19396838	19396955	19396838	ID=Msa0803920-mRNA-1:cds;Parent=Msa0803920-mRNA-1
chr5_3	CDS	19396188	19396347	19396188	ID=Msa0803920-mRNA-1:cds;Parent=Msa0803920-mRNA-1
chr5_3	CDS	19395811	19395842	19395811	ID=Msa0803920-mRNA-1:cds;Parent=Msa0803920-mRNA-1
chr5_3	CDS	19395615	19395680	19395615	ID=Msa0803920-mRNA-1:cds;Parent=Msa0803920-mRNA-1
chr5_3	CDS	19395316	19395387	19395316	ID=Msa0803920-mRNA-1:cds;Parent=Msa0803920-mRNA-1
chr5_3	CDS	19395050	19395124	19395050	ID=Msa0803920-mRNA-1:cds;Parent=Msa0803920-mRNA-1
chr5_3	three_prime_UTR	19394882	19395049	19394882	ID=Msa0803920-mRNA-1:three_prime_utr;Parent=Msa0803920-mRNA-1

Gene Sequence

>Msa0803920

ATGAGACACGAAGCACTTATTGGACTCCTTCTTATATCAAACATGCTCATGGCAACACGCCTCACACTCACATTCTCACTCTCTCGCTCTTCTCGTTCTCGTATTCACCCTCTTCTTAAACGCACTTCTTGTTCCTTTTTCAACCCTAAGCATTCTCATAAATCCCTTCCTTGTCCCCTTTGGTCTTCTTCCTTTTCCTTCTGCATTGATTCACTTCACAAGTCTACTTCACCTTCGTTTACTTGTTCGGCTTCTTCCATGGCTGCTTCTGCTCTTGATGTTGAAGCTAATCCTCTTTTGAAGGAGTTTGTTTTTCCTCCTTTTGATGTTGTTGAAGCGAAGCATGTGAGACCGGGAATTCGTGCTCTTCTTGAGAAATTGGAACGTGATTTGGAGGAGCTTGAACGGAGTGTGGAACCTTCGTGGCCTAAGTTGGTAGAACCTTTGGAGAAGATTGTGGATAGGTTGGCTGTTGTTTGGGGGATGGTTAATCATCTCAAAGCTGTTAAGGATAATTCTGAGCTCCGTTCAGCCATTGAAGATGTGCAGGCAGAAAAAGTTAAGTTTCAGCTTAGACTAGGTCAAAGCAAGCCTCTTTATAATGCGTTCAAAGCGATTCAAGACTCTCCTGATTGGAAGACACTTAGCGATGCTCGCAAACGAATTGTTGAGAACCAAATAAAGGAGGCAGTTCTTAATGGTGTTTCTCTTGAAGATGATAAAAGAGAACAGTTTAACAAAATTGAACAGGAGCTGGAAAGGTTATCAGAAAAATTTGGGGAGAACGTTCTGGATGCAACCAAAAAGTTTGAAAAGCTCATTACAGATAAGAAGGAGATTGAAGGATTACCTGCTACTGCTCTTGGGTTGGCTGCACAAAGCGCAGTATCTAAGGGGCATGAAAATGCCACCGCTGAGAATGGGCCATGGGTAATTACATTGGATGCTCCAAGTTATATTGCAGTCATGCAACATGCTCGCAACCGTTCTCTGCGTGAGGAAGTCTACCGTGCATATTTAACTCGAGCATCGAGTGGTGATTTGGATAATACTAAACTGATCGAGCAAATTTTAAAGCTGAGGTTGGAAAAGGCCAAGCTTCTCAACTACAATAACTATGCAGAGGTTAGCATGGCAACCAAGATGGCAACTGTTGATAAAGCAGAAGAACTTCTAGAGAAGCTTCGTAAAGCTTCCTGGGATGCTGCAGTACAAGATATGGAAGACCTTAAGAAATTTTCTAAAGACCAGGGTGCATTGGAAGCTGATGATTTGACACATTGGGACATTAGCTTTTGGAGTGAGAGGCTTCGTGAATCAAAATATGACATTAATGAGGAAGAACTGCGCCCATTTTTTTCTCTGCCAAATGTTATGGATGGACTCTTTGACCTTGCAAAAACACTTTTTGGCATTGAAATTGAGCCAGCTGACGGTCTAGCTCCGGTTTGGAATAGTGATGTCAAGTTCTTTCGTGTCAAAGATTCCTCAGGCAGTCCAGTTGCCTATTTTTATTTTGATCCCTACAGTCGTCCTTCGGAAAAAAGGCAAGGTGCGTGGATGGATGAAGTTGTTGCTCGTAGTCGTGTACTGTCGCCTGATGGTAACTCATCAAGGTTGCCTGTGGCCCACATGGTGTGCAATCAAACACCTCCAGTAGGAAGCAAGCCAAGTTTAATGACATTCCGTGAGGTTGAGACTGTCTTCCATGAATTTGGACACGCACTTCAACACATGCTTACTAGGGAAGATGAGGGTCTAGTTGCTGGTATTAGGGGAATAGAGTGGGATGCTGTTGAATTACCTTCTCAGTTTATGGAAAACTGGTGCTACCATAAAAAGACTTTAATGGGCATTGCAAAACATTTTGAAACTGGGGAGACTCTCCCAGAAGACGTATATCAGAAGCTTGTTGCCGCCAGAACTTATCGTGCTGGCACTCAAAGTCTTCGACAGATAAAATTTGCAACTGTCGATCTGGAACTTCATACAAAATATGTTCCTGGGGGACAAGAATCCATCTATGATGTTGATCGCAGAGTTTCTGAGAAAACTCAAGTGATTCCTCCATTGCCAGAGGACAGATTCCTTTGCAGCTTCAGTCATATATTTGCAGGTGGATATGCAGCTGGATACTATAGCTACAAGTGGGCTGAAGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCAGGATTGGATGATAACAAGGCTGTTGTAGAAACGGGACACAAGTTCAGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTTGAGGTGTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTCAGACACAATGGCCTAATTGCAGCTTAG

Protein sequence

>Msa0803920

MRHEALIGLLLISNMLMATRLTLTFSLSRSSRSRIHPLLKRTSCSFFNPKHSHKSLPCPLWSSSFSFCIDSLHKSTSPSFTCSASSMAASALDVEANPLLKEFVFPPFDVVEAKHVRPGIRALLEKLERDLEELERSVEPSWPKLVEPLEKIVDRLAVVWGMVNHLKAVKDNSELRSAIEDVQAEKVKFQLRLGQSKPLYNAFKAIQDSPDWKTLSDARKRIVENQIKEAVLNGVSLEDDKREQFNKIEQELERLSEKFGENVLDATKKFEKLITDKKEIEGLPATALGLAAQSAVSKGHENATAENGPWVITLDAPSYIAVMQHARNRSLREEVYRAYLTRASSGDLDNTKLIEQILKLRLEKAKLLNYNNYAEVSMATKMATVDKAEELLEKLRKASWDAAVQDMEDLKKFSKDQGALEADDLTHWDISFWSERLRESKYDINEEELRPFFSLPNVMDGLFDLAKTLFGIEIEPADGLAPVWNSDVKFFRVKDSSGSPVAYFYFDPYSRPSEKRQGAWMDEVVARSRVLSPDGNSSRLPVAHMVCNQTPPVGSKPSLMTFREVETVFHEFGHALQHMLTREDEGLVAGIRGIEWDAVELPSQFMENWCYHKKTLMGIAKHFETGETLPEDVYQKLVAARTYRAGTQSLRQIKFATVDLELHTKYVPGGQESIYDVDRRVSEKTQVIPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLSADAFSAFEDAGLDDNKAVVETGHKFRETILALGGGKPPLEVFVQFRGREPTPDALLRHNGLIAA*