AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0709480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0709480 MtrunA17_Chr7g0266491 97.496 559 8 1 1 559 1 553 0.0 1103
Msa0709480 MtrunA17_Chr4g0003161 29.053 475 309 9 68 528 1 461 1.24e-58 203
Msa0709480 MtrunA17_Chr2g0333241 28.471 425 294 4 68 488 1 419 1.36e-56 197
Msa0709480 MtrunA17_Chr8g0350161 33.113 302 189 5 76 366 69 368 1.17e-38 145
Msa0709480 MtrunA17_Chr4g0073891 33.702 181 109 2 185 354 438 618 4.77e-25 109
Msa0709480 MtrunA17_Chr7g0253151 31.061 132 85 2 256 381 7 138 9.07e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0709480 AT5G03940.1 79.820 555 101 3 6 559 20 564 0.0 888
Msa0709480 AT1G48900.1 29.424 469 315 9 68 528 1 461 1.07e-61 211
Msa0709480 AT1G48900.2 29.508 427 289 7 68 489 1 420 5.25e-61 208
Msa0709480 AT1G15310.1 27.862 463 304 8 68 520 1 443 2.95e-52 186
Msa0709480 AT5G49500.1 27.332 461 309 9 68 514 1 449 1.64e-51 184
Msa0709480 AT5G49500.2 29.012 324 222 5 197 514 6 327 1.68e-41 154
Msa0709480 AT2G45770.1 34.266 286 176 4 91 366 82 365 1.55e-40 151
Msa0709480 AT4G30600.2 33.702 181 109 2 185 354 441 621 2.15e-24 107
Msa0709480 AT4G30600.1 33.702 181 109 2 185 354 441 621 2.15e-24 107

Find 186 sgRNAs with CRISPR-Local

Find 432 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGGAATTTGGAGATTA+TGG 0.167511 5_1:-641896 Msa0709480:CDS
TAATTACATACATTTGATTT+TGG 0.169710 5_1:+640177 None:intergenic
TCGAGAAGCAGAGAGGAATT+TGG 0.235766 5_1:-641905 Msa0709480:CDS
AAAAGAGTTGCTCAGGATTC+AGG 0.239715 5_1:-641711 Msa0709480:CDS
CCTGGAGTTTGGTGAAATTT+AGG 0.247585 5_1:-640334 Msa0709480:three_prime_UTR
TTCTCCTTTGAGTTTGTTCC+AGG 0.251259 5_1:+645951 None:intergenic
AGGCAACCTCCTCGTGGATT+TGG 0.264733 5_1:-640529 Msa0709480:CDS
CGAAAGTCAATTCAAAATAT+TGG 0.268031 5_1:+640263 None:intergenic
CCGCGTCCTACCAACTTAAT+TGG 0.278636 5_1:+642495 None:intergenic
GGGGATTCTGCCAACAGTTC+TGG 0.296671 5_1:+641744 None:intergenic
AATCTTGAGATTGGAATAAC+TGG 0.302413 5_1:-643504 Msa0709480:CDS
AGGCTCCACAATATTGTCTT+TGG 0.320488 5_1:+645746 None:intergenic
AGCAAATTATTTCAAGAAAC+AGG 0.324652 5_1:-644908 Msa0709480:intron
TTCTACCCCGACCGAATGGC+TGG 0.326392 5_1:-642447 Msa0709480:CDS
ACTACTTTCAATCTTGAGAT+TGG 0.343939 5_1:-643513 Msa0709480:CDS
AATGACAGTGGGACCAGATT+TGG 0.346217 5_1:+644981 None:intergenic
GGCAACCTCCTCGTGGATTT+GGG 0.348400 5_1:-640528 Msa0709480:CDS
TATTGACCAGCTTACTATCT+TGG 0.348505 5_1:-644748 Msa0709480:CDS
CGAATGGCTGGGCGAATACT+AGG 0.353253 5_1:-642435 Msa0709480:CDS
CGAGTCATTGGGATGATTCC+TGG 0.363618 5_1:-642181 Msa0709480:CDS
AACTATTTCAAATGCGTGTT+CGG 0.364308 5_1:-641533 Msa0709480:CDS
TGGAGCCTATGCGAGATATT+AGG 0.368726 5_1:-645731 Msa0709480:CDS
AACTCGTACTGTTGCACAAA+TGG 0.369291 5_1:-642215 Msa0709480:CDS
TTTCTCCTCCTTGCAGTGCC+AGG 0.373193 5_1:+640592 None:intergenic
GTTCCATGATGACAGGTATC+TGG 0.374730 5_1:-642522 Msa0709480:intron
TTTGGTTTCAGAAAGAGATA+TGG 0.377040 5_1:-646080 Msa0709480:intron
ATTTCAGCCCTGACCACAAC+TGG 0.384313 5_1:+646006 None:intergenic
ACCTTAACCAATTGTTGATC+GGG 0.385466 5_1:+645514 None:intergenic
CTGAGTTGAGTTGGTGAAGA+TGG 0.386701 5_1:-646316 Msa0709480:exon
GGTTCTGTGTCCCGAGTCAT+TGG 0.391809 5_1:-642193 Msa0709480:CDS
TGATTCGTCCAGTTGTGGTC+AGG 0.396228 5_1:-646014 Msa0709480:CDS
CTAGTATTCGCCCAGCCATT+CGG 0.398693 5_1:+642436 None:intergenic
CATCTGTCTGTCTCTTGAAC+AGG 0.400352 5_1:-640089 Msa0709480:three_prime_UTR
GCTTACTATCTTGGGTAAAC+AGG 0.402642 5_1:-644739 Msa0709480:intron
TGCACAAACCTTCTTACAAC+AGG 0.405371 5_1:+645586 None:intergenic
ATGAGTGTTGTCCTGGAGTT+TGG 0.414297 5_1:-640345 Msa0709480:three_prime_UTR
AAGAGTTGCATGCTAGTTGC+CGG 0.418576 5_1:-644792 Msa0709480:CDS
GGGAGATGTCCTTTCATTTG+TGG 0.426105 5_1:-642409 Msa0709480:CDS
TGGCTGGACTCCAGGGAGTT+GGG 0.427729 5_1:-644954 Msa0709480:CDS
ATTGACCAGCTTACTATCTT+GGG 0.431760 5_1:-644747 Msa0709480:CDS
TGTTGGCAGAATCCCCTGTT+AGG 0.440576 5_1:-641737 Msa0709480:CDS
CACCTTCCATTACACCCATT+AGG 0.440609 5_1:+641502 None:intergenic
CGAAAGAATTTCTGTAAGAA+AGG 0.442635 5_1:+646190 None:intergenic
TTAGTTCTAATTCTGCATAC+AGG 0.442859 5_1:+640120 None:intergenic
TCGGTACCTGCTGTATATAC+AGG 0.444563 5_1:+644273 None:intergenic
AGAAGAAGAGGAGGAGGAGA+AGG 0.448387 5_1:+646242 None:intergenic
TTGGTTTCAGAAAGAGATAT+GGG 0.450221 5_1:-646079 Msa0709480:intron
TGATGAACTTGTACAATTGA+TGG 0.450286 5_1:-645031 Msa0709480:CDS
TGTGCAATCTGTTACCGATC+AGG 0.450503 5_1:-645569 Msa0709480:CDS
TATAGTAATGAGTGTTGTCC+TGG 0.453706 5_1:-640352 Msa0709480:three_prime_UTR
GTAGTAGTACTGAGTTGAGT+TGG 0.454449 5_1:-646325 Msa0709480:five_prime_UTR
ACCATCTAGCTTTGTCAAGA+TGG 0.456368 5_1:+643479 None:intergenic
TTGTTTATTTCCAGAGGAAA+GGG 0.462852 5_1:-641772 Msa0709480:intron
ATGAGTTAAAAGATGTGAAA+CGG 0.463351 5_1:-644026 Msa0709480:CDS
ATGTTTGGTCAGTTAACTAC+TGG 0.464315 5_1:-645985 Msa0709480:CDS
ATCTGTTACCGATCAGGCTG+TGG 0.465911 5_1:-645563 Msa0709480:CDS
TCAAAACTATAAATGAATCA+AGG 0.466958 5_1:+640218 None:intergenic
GAAATAGTTGAGCTACAAGT+TGG 0.467353 5_1:+641547 None:intergenic
TTCAGGGAAAACAGAGCAGC+AGG 0.469594 5_1:-641694 Msa0709480:intron
TTGGCTGGACTCCAGGGAGT+TGG 0.470608 5_1:-644955 Msa0709480:CDS
ATTCGCCCAGCCATTCGGTC+GGG 0.474602 5_1:+642441 None:intergenic
GTGGTCAGGGCTGAAATGTT+TGG 0.475946 5_1:-646000 Msa0709480:CDS
ACCCGATCAACAATTGGTTA+AGG 0.476728 5_1:-645515 Msa0709480:intron
GACCTTAACCAATTGTTGAT+CGG 0.476809 5_1:+645513 None:intergenic
GAGAGAGAGGCGTCGACAAA+TGG 0.477474 5_1:+646274 None:intergenic
GTCCATACCTTTGCCATACC+AGG 0.477722 5_1:+642163 None:intergenic
GAAGAACCTAATGGGTGTAA+TGG 0.479055 5_1:-641508 Msa0709480:CDS
ATTGATGGGTGGAGAGGTCT+CGG 0.479082 5_1:-645016 Msa0709480:CDS
AAATGTATGTAATTATGAAA+AGG 0.479872 5_1:-640169 Msa0709480:three_prime_UTR
AAAGAGTTGCTCAGGATTCA+GGG 0.481124 5_1:-641710 Msa0709480:CDS
AGCACTTAAGACAGAGGAAA+AGG 0.481940 5_1:-641448 Msa0709480:intron
ACAACTAACAAGACTTCTGT+TGG 0.482412 5_1:+643994 None:intergenic
TGTTCGGATGAAGAACCTAA+TGG 0.483285 5_1:-641517 Msa0709480:CDS
TAGGAGGAAAAGAGTTGCTC+AGG 0.484363 5_1:-641718 Msa0709480:CDS
GCCATTCGGTCGGGGTAGAA+AGG 0.484456 5_1:+642450 None:intergenic
TGTCCTTTCATTTGTGGAGA+AGG 0.486581 5_1:-642403 Msa0709480:CDS
ACAGATAGACAAAGCAATGA+TGG 0.487229 5_1:-644049 Msa0709480:intron
CTTGTTTATTTCCAGAGGAA+AGG 0.488526 5_1:-641773 Msa0709480:intron
TGAGTTAAAAGATGTGAAAC+GGG 0.488586 5_1:-644025 Msa0709480:CDS
GGCTGGGCGAATACTAGGAA+TGG 0.491731 5_1:-642430 Msa0709480:CDS
CATTGGGATGATTCCTGGTA+TGG 0.493705 5_1:-642176 Msa0709480:CDS
AGTCAAACCCGATCAACAAT+TGG 0.494660 5_1:-645521 Msa0709480:CDS
ACTCGTACTGTTGCACAAAT+GGG 0.495670 5_1:-642214 Msa0709480:CDS
CTACTGGTCTTGAATCTGCC+TGG 0.496338 5_1:-645969 Msa0709480:CDS
TAAGTCTTCCTGTTGTAAGA+AGG 0.496852 5_1:-645594 Msa0709480:CDS
AACAGAAGTCTTGTTAGTTG+TGG 0.499790 5_1:-643992 Msa0709480:CDS
TTTGAAATGCATATATTGGA+TGG 0.502839 5_1:-640200 Msa0709480:three_prime_UTR
ACCGATCAGGCTGTGGGTGT+TGG 0.504964 5_1:-645556 Msa0709480:CDS
AGAGTTGCATGCTAGTTGCC+GGG 0.509180 5_1:-644791 Msa0709480:CDS
TTCTTACAGAAATTCTTTCG+CGG 0.510015 5_1:-646187 Msa0709480:intron
TCTGCTTCTCGAATTTGAGC+AGG 0.510234 5_1:+641916 None:intergenic
GTTCGGATGAAGAACCTAAT+GGG 0.510846 5_1:-641516 Msa0709480:CDS
TGCCTATATCAGGCTCCACC+TGG 0.515675 5_1:-640610 Msa0709480:intron
GTGGTTATTGTTGACACTGC+TGG 0.517304 5_1:-644189 Msa0709480:CDS
AAGCGTAACTGTGAGAAGAA+TGG 0.518182 5_1:-646040 Msa0709480:CDS
GCCATCTTGACAAAGCTAGA+TGG 0.519028 5_1:-643480 Msa0709480:CDS
CGGTTGTCTTCCCAACTCCC+TGG 0.520103 5_1:+644944 None:intergenic
GTATGTAATTATGAAAAGGA+TGG 0.520684 5_1:-640165 Msa0709480:three_prime_UTR
TTAGTTGTGGATGCTATGAC+AGG 0.524157 5_1:-643979 Msa0709480:CDS
TCCTCAAGATTACTAAGTGT+TGG 0.525137 5_1:+641471 None:intergenic
CCAATTAAGTTGGTAGGACG+CGG 0.525708 5_1:-642495 Msa0709480:CDS
CTCCTCCTTGCAGTGCCAGG+TGG 0.527092 5_1:+640595 None:intergenic
ATCTGGAAAGCCAATTAAGT+TGG 0.532188 5_1:-642505 Msa0709480:CDS
GAAAGAATTTCTGTAAGAAA+GGG 0.533546 5_1:+646191 None:intergenic
GATTCGTCCAGTTGTGGTCA+GGG 0.534044 5_1:-646013 Msa0709480:CDS
CCTTGTTTAGCAATGTCTGA+TGG 0.535641 5_1:+644243 None:intergenic
GCTGGGCGAATACTAGGAAT+GGG 0.537490 5_1:-642429 Msa0709480:CDS
ATTTGCTAACTTTGCACACA+CGG 0.543445 5_1:+644924 None:intergenic
ATAGTCCAGTTTGGCAGTTG+TGG 0.544481 5_1:-646391 None:intergenic
GGTAGGACGCGGGGAACGCA+TGG 0.546745 5_1:-642484 Msa0709480:CDS
TCCAACACCCACAGCCTGAT+CGG 0.547331 5_1:+645555 None:intergenic
ATTGACATGCAACAATATGA+TGG 0.551838 5_1:-640478 Msa0709480:three_prime_UTR
CCTAAATTTCACCAAACTCC+AGG 0.553319 5_1:+640334 None:intergenic
CCATCAGACATTGCTAAACA+AGG 0.553327 5_1:-644243 Msa0709480:CDS
GAGAGGCGTCGACAAATGGC+GGG 0.554493 5_1:+646278 None:intergenic
CAGGAATCATCCCAATGACT+CGG 0.557170 5_1:+642182 None:intergenic
ATGACAGGGCAAGAAGCAGC+AGG 0.557985 5_1:-643964 Msa0709480:intron
TTCGCCCAGCCATTCGGTCG+GGG 0.560357 5_1:+642442 None:intergenic
ACCTTTCTACCCCGACCGAA+TGG 0.561059 5_1:-642451 Msa0709480:CDS
TCTACCCCGACCGAATGGCT+GGG 0.561326 5_1:-642446 Msa0709480:CDS
TGACACTGCTGGTAGGCTGC+AGG 0.561863 5_1:-644178 Msa0709480:intron
CAAAACTATAAATGAATCAA+GGG 0.563295 5_1:+640219 None:intergenic
GTAAGCTGGTCAATAGCAGC+AGG 0.564367 5_1:+644756 None:intergenic
AATTTGGATCAACATGTCAC+TGG 0.568531 5_1:-640445 Msa0709480:three_prime_UTR
TATTCGCCCAGCCATTCGGT+CGG 0.569867 5_1:+642440 None:intergenic
GGTTTCAGAAAGAGATATGG+GGG 0.571669 5_1:-646077 Msa0709480:intron
TGAATCGATCTAACAATGGA+AGG 0.573224 5_1:+640379 None:intergenic
AAGGGAAAAGCCAGAACTGT+TGG 0.573499 5_1:-641754 Msa0709480:CDS
TTTGACCAAAGACAATATTG+TGG 0.573841 5_1:-645751 Msa0709480:CDS
GGAGAAAGAAAGCAGAGTCA+AGG 0.579685 5_1:-640576 Msa0709480:CDS
GTGCCTTCTCCACAAATGAA+AGG 0.579893 5_1:+642400 None:intergenic
AGTCAATTCAAAATATTGGA+TGG 0.581427 5_1:+640267 None:intergenic
AGGCTCCACCTGGCACTGCA+AGG 0.582090 5_1:-640600 Msa0709480:CDS
AAGAGACAGACAGATGATGC+AGG 0.582560 5_1:+640096 None:intergenic
AGCAGGTCTATAAACATCCC+CGG 0.585086 5_1:+644773 None:intergenic
AGAGTCAAGGAGGTTATTTG+CGG 0.586249 5_1:-640563 Msa0709480:CDS
TGGAACAAACTCAAAGGAGA+AGG 0.586363 5_1:-645949 Msa0709480:intron
AGAGAGGCGTCGACAAATGG+CGG 0.588145 5_1:+646277 None:intergenic
GATGAACTTGTACAATTGAT+GGG 0.589831 5_1:-645030 Msa0709480:CDS
GCCAACACTTAGTAATCTTG+AGG 0.591019 5_1:-641472 Msa0709480:CDS
TTATTGTTGACACTGCTGGT+AGG 0.592237 5_1:-644185 Msa0709480:CDS
AAGGTTCGATGATGAGAGAG+AGG 0.594453 5_1:+646261 None:intergenic
GGAAAGCCAATTAAGTTGGT+AGG 0.595007 5_1:-642501 Msa0709480:CDS
GGATATGATTCGTCCAGTTG+TGG 0.595288 5_1:-646019 Msa0709480:CDS
CAATTAAGTTGGTAGGACGC+GGG 0.595793 5_1:-642494 Msa0709480:CDS
AGCAGCTTTGAGTGTCAAAG+AGG 0.598337 5_1:-643442 Msa0709480:intron
TTGACATGCAACAATATGAT+GGG 0.598344 5_1:-640477 Msa0709480:three_prime_UTR
AACCTAATGGGTGTAATGGA+AGG 0.598961 5_1:-641504 Msa0709480:CDS
GACGTCCCTGTATATACAGC+AGG 0.602587 5_1:-644279 Msa0709480:CDS
CGGTACCTGCTGTATATACA+GGG 0.602823 5_1:+644274 None:intergenic
GTTCTGTGTCCCGAGTCATT+GGG 0.606542 5_1:-642192 Msa0709480:CDS
CAGAAATGAGATGTACGTGC+GGG 0.606982 5_1:-640311 Msa0709480:three_prime_UTR
TCTGTTACCGATCAGGCTGT+GGG 0.610240 5_1:-645562 Msa0709480:CDS
CTAGATGGTGATTCAAGAGG+TGG 0.610528 5_1:-643465 Msa0709480:CDS
TGGCAGAATCCCCTGTTAGG+AGG 0.611355 5_1:-641734 Msa0709480:CDS
AGGAATCATCCCAATGACTC+GGG 0.615306 5_1:+642183 None:intergenic
ATAATAGAAGCAATGACCCC+TGG 0.615476 5_1:-641868 Msa0709480:intron
TTTATAAACAGATAATGCAC+AGG 0.617858 5_1:+640015 None:intergenic
TGGTTTCAGAAAGAGATATG+GGG 0.625583 5_1:-646078 Msa0709480:intron
GTGGGTGTTGGAGTCACTCG+AGG 0.626313 5_1:-645544 Msa0709480:CDS
TGTACAATTGATGGGTGGAG+AGG 0.626360 5_1:-645022 Msa0709480:CDS
TGAATGAATCGATCTAACAA+TGG 0.627827 5_1:+640375 None:intergenic
ACGTCAAGGCAACCTCCTCG+TGG 0.630526 5_1:-640535 Msa0709480:CDS
GATGATTCCTGGTATGGCAA+AGG 0.630568 5_1:-642170 Msa0709480:intron
GTTTACCCAAGATAGTAAGC+TGG 0.632085 5_1:+644742 None:intergenic
TCTGCCTGGAACAAACTCAA+AGG 0.633411 5_1:-645955 Msa0709480:CDS
AAGCTAGATGGTGATTCAAG+AGG 0.639369 5_1:-643468 Msa0709480:CDS
CTCCACCTGGCACTGCAAGG+AGG 0.641190 5_1:-640597 Msa0709480:CDS
CTAATGGGTGTAATGGAAGG+TGG 0.643784 5_1:-641501 Msa0709480:CDS
GCTCTCCTAATATCTCGCAT+AGG 0.645965 5_1:+645726 None:intergenic
CCAGCCAATAAAATGACAGT+GGG 0.646812 5_1:+644970 None:intergenic
CTCAAATTCGAGAAGCAGAG+AGG 0.649334 5_1:-641912 Msa0709480:CDS
TTGCTCCCAAATCCACGAGG+AGG 0.650329 5_1:+640523 None:intergenic
GATGCAACAAGAAGATGCTG+AGG 0.655115 5_1:-642293 Msa0709480:CDS
GAGTTGCATGCTAGTTGCCG+GGG 0.661574 5_1:-644790 Msa0709480:CDS
TGAGGAAGCACTTAAGACAG+AGG 0.664134 5_1:-641454 Msa0709480:CDS
AATTAAGTTGGTAGGACGCG+GGG 0.665000 5_1:-642493 Msa0709480:CDS
GCAGAAATGAGATGTACGTG+CGG 0.668500 5_1:-640312 Msa0709480:three_prime_UTR
GAAAGAAAGCAGAGTCAAGG+AGG 0.669836 5_1:-640573 Msa0709480:CDS
AATGTCTGATGGTTTAACAT+CGG 0.671775 5_1:+644254 None:intergenic
TCCAGCCAATAAAATGACAG+TGG 0.677478 5_1:+644969 None:intergenic
TATTTGCGGACTCAACGTCA+AGG 0.678247 5_1:-640549 Msa0709480:CDS
GACATGCAACAATATGATGG+GGG 0.693124 5_1:-640475 Msa0709480:three_prime_UTR
TGACATGCAACAATATGATG+GGG 0.701808 5_1:-640476 Msa0709480:three_prime_UTR
GAACTTGTACAATTGATGGG+TGG 0.725839 5_1:-645027 Msa0709480:CDS
TAGTTGTGGATGCTATGACA+GGG 0.765406 5_1:-643978 Msa0709480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAGGAAAAAATATAAT+TGG - chr5_1:640957-640976 Msa0709480:intron 10.0%
!!! TTTTAGGAAAAAATATAATT+GGG - chr5_1:640958-640977 Msa0709480:intron 10.0%
!!! ATTCTTATTTTTTAACAAAT+TGG - chr5_1:641918-641937 Msa0709480:CDS 10.0%
!!! TAATTTAAGACTTATAATTT+GGG + chr5_1:643171-643190 None:intergenic 10.0%
!!! ATAATTTAAGACTTATAATT+TGG + chr5_1:643172-643191 None:intergenic 10.0%
!! ATAAGTCTTAAATTATAATT+AGG - chr5_1:643176-643195 Msa0709480:intron 10.0%
!! AAATAAAATATATAAGAGAA+AGG + chr5_1:643785-643804 None:intergenic 10.0%
!!! TCTTATATATTTTATTTGAT+TGG - chr5_1:643788-643807 Msa0709480:intron 10.0%
!!! CTTATATATTTTATTTGATT+GGG - chr5_1:643789-643808 Msa0709480:intron 10.0%
!! CATGTATTTAAAAAAATAAA+TGG - chr5_1:646372-646391 Msa0709480:five_prime_UTR 10.0%
!!! TTTTTTAATGATCATATCAT+TGG + chr5_1:640479-640498 None:intergenic 15.0%
!!! TTTTGTTCTTGTTTTTTTTT+AGG - chr5_1:640942-640961 Msa0709480:intron 15.0%
!!! ATAAACTGATTCTAAATTAA+TGG - chr5_1:642475-642494 Msa0709480:CDS 15.0%
!!! AATCACATTTTGTAAATTAA+CGG + chr5_1:643064-643083 None:intergenic 15.0%
!! TAAATAGTTAAGTGTATTAT+AGG - chr5_1:643273-643292 Msa0709480:intron 15.0%
!! TTTATAAATAAGAATTAAGG+TGG - chr5_1:643402-643421 Msa0709480:intron 15.0%
!!! TCACATTATAGTTTTTAATA+TGG + chr5_1:643733-643752 None:intergenic 15.0%
!! GTAATAAGTAGAAATATTTA+GGG + chr5_1:644214-644233 None:intergenic 15.0%
!! TGTAATAAGTAGAAATATTT+AGG + chr5_1:644215-644234 None:intergenic 15.0%
!! AAAAATAATTAATGTTGTCT+TGG - chr5_1:645168-645187 Msa0709480:intron 15.0%
!!! TAATTACATACATTTGATTT+TGG + chr5_1:646162-646181 None:intergenic 15.0%
!! AAATGTATGTAATTATGAAA+AGG - chr5_1:646167-646186 Msa0709480:intron 15.0%
!!! ATGATATTTTCAATAATTTC+TGG + chr5_1:646355-646374 None:intergenic 15.0%
!! TGATAGATAAGATACTAATT+TGG - chr5_1:640228-640247 Msa0709480:three_prime_UTR 20.0%
!! TTTAATGTAATTACATGTGT+CGG - chr5_1:640510-640529 Msa0709480:exon 20.0%
!!! ATTATGAGTTTTAACTGATT+TGG - chr5_1:640663-640682 Msa0709480:intron 20.0%
!!! AATTTTTGTATAGTTTTCGT+AGG - chr5_1:640686-640705 Msa0709480:intron 20.0%
!! TACATAAAACATAACACAAA+TGG + chr5_1:640890-640909 None:intergenic 20.0%
!! ACAAATATACATTCATTTGT+GGG + chr5_1:641144-641163 None:intergenic 20.0%
!!! AACCAAAAAAAAGTATTAGA+AGG + chr5_1:641477-641496 None:intergenic 20.0%
!!! TTTTTTAACAAATTGGATTC+AGG - chr5_1:641925-641944 Msa0709480:CDS 20.0%
!!! CATATATTTTACTACCAAAT+TGG - chr5_1:642514-642533 Msa0709480:intron 20.0%
!!! CTAACTAAAATATGGTTTTT+TGG + chr5_1:642699-642718 None:intergenic 20.0%
!!! CAAAAAACCATATTTTAGTT+AGG - chr5_1:642697-642716 Msa0709480:intron 20.0%
!! ACAAAAACCTAACTAAAATA+TGG + chr5_1:642707-642726 None:intergenic 20.0%
!!! ATCACATTTTGTAAATTAAC+GGG + chr5_1:643063-643082 None:intergenic 20.0%
!!! AGAAGGATGATAATTTTTTT+TGG + chr5_1:643103-643122 None:intergenic 20.0%
!! ACAAAATTATCCTTCATTAA+TGG - chr5_1:643208-643227 Msa0709480:intron 20.0%
!! ATGTAACATTAATGTTTCAA+TGG - chr5_1:643298-643317 Msa0709480:intron 20.0%
!!! GGCTTTATAAATAAGAATTA+AGG - chr5_1:643399-643418 Msa0709480:intron 20.0%
!! GTATTGAAATGAAAAATTGA+AGG + chr5_1:643537-643556 None:intergenic 20.0%
!! TTAATATGGTTTAGAAACAT+AGG + chr5_1:643719-643738 None:intergenic 20.0%
!! TTATTACAGTTTCATGTATT+TGG - chr5_1:644227-644246 Msa0709480:CDS 20.0%
!! TGCAAATATATAATCAAAAC+TGG + chr5_1:644363-644382 None:intergenic 20.0%
!! AATACTTATAATGTGATAGA+AGG + chr5_1:644961-644980 None:intergenic 20.0%
!!! AGTAAGACATATTTTTTTGA+CGG - chr5_1:645044-645063 Msa0709480:intron 20.0%
!! GGAAATTACATTAAGATAAT+AGG + chr5_1:645430-645449 None:intergenic 20.0%
!!! ATTAACTTTTTAAACAAGGA+AGG + chr5_1:645451-645470 None:intergenic 20.0%
!!! TCCTTGTTTAAAAAGTTAAT+TGG - chr5_1:645451-645470 Msa0709480:intron 20.0%
!!! TCCAATTAACTTTTTAAACA+AGG + chr5_1:645455-645474 None:intergenic 20.0%
!!! GAAGGAAATTATTTTATCTA+AGG + chr5_1:645942-645961 None:intergenic 20.0%
!! CAAAACTATAAATGAATCAA+GGG + chr5_1:646120-646139 None:intergenic 20.0%
!! TCAAAACTATAAATGAATCA+AGG + chr5_1:646121-646140 None:intergenic 20.0%
!!! TAGTTTTGAAATGCATATAT+TGG - chr5_1:646132-646151 Msa0709480:intron 20.0%
! GAAAGAATTTCTGTAAGAAA+GGG + chr5_1:640148-640167 None:intergenic 25.0%
! GTATCTTATCTATCAATGAA+TGG + chr5_1:640223-640242 None:intergenic 25.0%
! GATAAGATACTAATTTGGTT+TGG - chr5_1:640233-640252 Msa0709480:three_prime_UTR 25.0%
! TATATTCAAAACTACTGCAA+TGG - chr5_1:641017-641036 Msa0709480:intron 25.0%
! CAAATATACATTCATTTGTG+GGG + chr5_1:641143-641162 None:intergenic 25.0%
! CACAAATATACATTCATTTG+TGG + chr5_1:641145-641164 None:intergenic 25.0%
! CACAAATGAATGTATATTTG+TGG - chr5_1:641143-641162 Msa0709480:intron 25.0%
! AGCAAATTATTTCAAGAAAC+AGG - chr5_1:641428-641447 Msa0709480:intron 25.0%
!!! CACCTTCTAATACTTTTTTT+TGG - chr5_1:641472-641491 Msa0709480:CDS 25.0%
! GAATATGATTCGTTTCAATA+AGG + chr5_1:641509-641528 None:intergenic 25.0%
! ACTTCAATGAAACAAAAATC+TGG + chr5_1:641625-641644 None:intergenic 25.0%
! TGACTGACTATATTTAAATG+AGG + chr5_1:641684-641703 None:intergenic 25.0%
! TGTCTGGATAAAAATTATGA+AGG - chr5_1:641873-641892 Msa0709480:CDS 25.0%
!! AATTAGTTATAGCTTGTATC+AGG - chr5_1:642032-642051 Msa0709480:intron 25.0%
!! CACATCAATTTTCTTCTTTT+TGG + chr5_1:642130-642149 None:intergenic 25.0%
! CAAAAAGAAGAAAATTGATG+TGG - chr5_1:642128-642147 Msa0709480:intron 25.0%
!! AAATTCTTTTATGCTCATCA+AGG - chr5_1:642247-642266 Msa0709480:CDS 25.0%
! ATGAGTTAAAAGATGTGAAA+CGG - chr5_1:642310-642329 Msa0709480:intron 25.0%
!!! TATGGTTTTTTGGTTTCTAA+AGG + chr5_1:642689-642708 None:intergenic 25.0%
! TATAATTATGTTCCTGATGT+TGG - chr5_1:642726-642745 Msa0709480:intron 25.0%
!! AAAACAGTGAAGTAGATTTT+GGG + chr5_1:642779-642798 None:intergenic 25.0%
!! TAAAACAGTGAAGTAGATTT+TGG + chr5_1:642780-642799 None:intergenic 25.0%
!!! TATTTTTGATTGAACAGCTT+TGG - chr5_1:642798-642817 Msa0709480:intron 25.0%
! TTATCCTTCATTAATGGTAT+AGG - chr5_1:643214-643233 Msa0709480:intron 25.0%
!! TTTTCCTATACCATTAATGA+AGG + chr5_1:643221-643240 None:intergenic 25.0%
! AGGTAAAACATCAAATTCAA+TGG + chr5_1:643629-643648 None:intergenic 25.0%
!! TTGATGTTTTACCTTCAAAA+TGG - chr5_1:643635-643654 Msa0709480:intron 25.0%
!! AAATTTTATGATACTCTCTG+TGG - chr5_1:643666-643685 Msa0709480:intron 25.0%
! ATAATCAAAACTGGAAAGAT+AGG + chr5_1:644354-644373 None:intergenic 25.0%
! TTAGTATAAAGAAACAACCA+GGG + chr5_1:644488-644507 None:intergenic 25.0%
! ATTAGTATAAAGAAACAACC+AGG + chr5_1:644489-644508 None:intergenic 25.0%
! AAATACACAACTATAATGTC+AGG - chr5_1:644762-644781 Msa0709480:CDS 25.0%
! TATGTCTTACTCTTTAGTAA+AGG + chr5_1:645035-645054 None:intergenic 25.0%
! TTAATTAGAGTAGTTGAAAG+TGG - chr5_1:645090-645109 Msa0709480:intron 25.0%
! TAATTAGAGTAGTTGAAAGT+GGG - chr5_1:645091-645110 Msa0709480:intron 25.0%
! TATTAAGATTCCACAAACAT+GGG - chr5_1:645486-645505 Msa0709480:intron 25.0%
! TACAACAAGATTCACAATAA+TGG + chr5_1:645651-645670 None:intergenic 25.0%
! AGTCAATTCAAAATATTGGA+TGG + chr5_1:646072-646091 None:intergenic 25.0%
! CGAAAGTCAATTCAAAATAT+TGG + chr5_1:646076-646095 None:intergenic 25.0%
!! TTTGAAATGCATATATTGGA+TGG - chr5_1:646136-646155 Msa0709480:intron 25.0%
! GTATGTAATTATGAAAAGGA+TGG - chr5_1:646171-646190 Msa0709480:intron 25.0%
!!! CTTGTAGAGTGTTTTATTTT+AGG - chr5_1:646272-646291 Msa0709480:CDS 25.0%
! TTTATAAACAGATAATGCAC+AGG + chr5_1:646324-646343 None:intergenic 25.0%
CGAAAGAATTTCTGTAAGAA+AGG + chr5_1:640149-640168 None:intergenic 30.0%
TTCTTACAGAAATTCTTTCG+CGG - chr5_1:640149-640168 Msa0709480:three_prime_UTR 30.0%
CTTATCTATCAATGAATGGA+GGG + chr5_1:640219-640238 None:intergenic 30.0%
TCTTATCTATCAATGAATGG+AGG + chr5_1:640220-640239 None:intergenic 30.0%
!! GATACTAATTTGGTTTGGTT+TGG - chr5_1:640238-640257 Msa0709480:three_prime_UTR 30.0%
! TTTGGTTTCAGAAAGAGATA+TGG - chr5_1:640256-640275 Msa0709480:three_prime_UTR 30.0%
TTGGTTTCAGAAAGAGATAT+GGG - chr5_1:640257-640276 Msa0709480:three_prime_UTR 30.0%
GTCAAATTGAAGACATGTTT+GGG + chr5_1:640548-640567 None:intergenic 30.0%
AGTCAAATTGAAGACATGTT+TGG + chr5_1:640549-640568 None:intergenic 30.0%
AACATGTCTTCAATTTGACT+TGG - chr5_1:640549-640568 Msa0709480:CDS 30.0%
TTTGACCAAAGACAATATTG+TGG - chr5_1:640585-640604 Msa0709480:CDS 30.0%
ATATTGTTCACCGTATAAAG+TGG - chr5_1:641111-641130 Msa0709480:intron 30.0%
AGTTCCATACAAGAACAAAA+TGG - chr5_1:641251-641270 Msa0709480:intron 30.0%
GTTCCATACAAGAACAAAAT+GGG - chr5_1:641252-641271 Msa0709480:intron 30.0%
TGATGAACTTGTACAATTGA+TGG - chr5_1:641305-641324 Msa0709480:intron 30.0%
GATGAACTTGTACAATTGAT+GGG - chr5_1:641306-641325 Msa0709480:intron 30.0%
! AAAGTATTAGAAGGTGATGA+AGG + chr5_1:641468-641487 None:intergenic 30.0%
AATCATATTCATCTGATCTC+AGG - chr5_1:641519-641538 Msa0709480:CDS 30.0%
ATCATATTCATCTGATCTCA+GGG - chr5_1:641520-641539 Msa0709480:CDS 30.0%
AGACAGATCATTAAAATCAG+TGG + chr5_1:641858-641877 None:intergenic 30.0%
!! ACTGATTTTAATGATCTGTC+TGG - chr5_1:641857-641876 Msa0709480:intron 30.0%
ATGAGTCAAACAATGCTAAT+TGG + chr5_1:641967-641986 None:intergenic 30.0%
AATGTCTGATGGTTTAACAT+CGG + chr5_1:642085-642104 None:intergenic 30.0%
TGAGTTAAAAGATGTGAAAC+GGG - chr5_1:642311-642330 Msa0709480:intron 30.0%
! ACTGATTCTAAATTAATGGC+TGG - chr5_1:642479-642498 Msa0709480:CDS 30.0%
AGAGTATAATAACCAACATC+AGG + chr5_1:642741-642760 None:intergenic 30.0%
ACTACTTTCAATCTTGAGAT+TGG - chr5_1:642823-642842 Msa0709480:intron 30.0%
AATCTTGAGATTGGAATAAC+TGG - chr5_1:642832-642851 Msa0709480:intron 30.0%
TGTTGAAAATTCTGGTATAG+CGG + chr5_1:643018-643037 None:intergenic 30.0%
AAGCAAATACAAGAACAAGA+AGG + chr5_1:643120-643139 None:intergenic 30.0%
! GACTTATAATTTGGGACATA+GGG + chr5_1:643163-643182 None:intergenic 30.0%
! AGACTTATAATTTGGGACAT+AGG + chr5_1:643164-643183 None:intergenic 30.0%
GTCTGTCAATAGTTAGTAAA+GGG - chr5_1:643367-643386 Msa0709480:intron 30.0%
TCAATAGTTAGTAAAGGGTT+AGG - chr5_1:643372-643391 Msa0709480:intron 30.0%
CAATAGTTAGTAAAGGGTTA+GGG - chr5_1:643373-643392 Msa0709480:intron 30.0%
AATAGTTAGTAAAGGGTTAG+GGG - chr5_1:643374-643393 Msa0709480:intron 30.0%
! TGAGTAACTCCAAATTTGTT+GGG - chr5_1:643442-643461 Msa0709480:intron 30.0%
GTAAACTGATAGGAAACAAT+TGG + chr5_1:643559-643578 None:intergenic 30.0%
CTTTATGTCAGTAAACTGAT+AGG + chr5_1:643569-643588 None:intergenic 30.0%
ACATAAAGCTAGAAATCACA+AGG - chr5_1:643581-643600 Msa0709480:intron 30.0%
! TGGAGATTAAGTTGTCAAAA+CGG + chr5_1:643609-643628 None:intergenic 30.0%
!!! TTTGTTTTGTGCCATTTTGA+AGG + chr5_1:643649-643668 None:intergenic 30.0%
ATTTAGGGATAGTTCATATG+CGG + chr5_1:644199-644218 None:intergenic 30.0%
TTAGTCCATCAACCTTAAAA+TGG - chr5_1:644302-644321 Msa0709480:intron 30.0%
TAGTATAAAGAAACAACCAG+GGG + chr5_1:644487-644506 None:intergenic 30.0%
GCATTCATATCTGTTGAATT+TGG - chr5_1:644513-644532 Msa0709480:intron 30.0%
TTGTTTATTTCCAGAGGAAA+GGG - chr5_1:644564-644583 Msa0709480:intron 30.0%
AACTATTTCAAATGCGTGTT+CGG - chr5_1:644803-644822 Msa0709480:intron 30.0%
!!! ACTCTTTAGTAAAGGCATTT+TGG + chr5_1:645027-645046 None:intergenic 30.0%
! CAGAAATAAAGTACTATCTC+TGG + chr5_1:645255-645274 None:intergenic 30.0%
!!! TTATTTTAACCCACATCTAC+AGG - chr5_1:645294-645313 Msa0709480:intron 30.0%
GTATTAAGATTCCACAAACA+TGG - chr5_1:645485-645504 Msa0709480:intron 30.0%
AAGCTATGGAGAAGAAATAA+AGG - chr5_1:645611-645630 Msa0709480:intron 30.0%
ATTGACATGCAACAATATGA+TGG - chr5_1:645858-645877 Msa0709480:intron 30.0%
TTGACATGCAACAATATGAT+GGG - chr5_1:645859-645878 Msa0709480:intron 30.0%
TGAATGAATCGATCTAACAA+TGG + chr5_1:645964-645983 None:intergenic 30.0%
!! TTAGTTCTAATTCTGCATAC+AGG + chr5_1:646219-646238 None:intergenic 30.0%
TCATCTCCTATTCTTCTGAT+TGG - chr5_1:640185-640204 Msa0709480:three_prime_UTR 35.0%
GAGTAACCAATCAGAAGAAT+AGG + chr5_1:640194-640213 None:intergenic 35.0%
TGGTTTCAGAAAGAGATATG+GGG - chr5_1:640258-640277 Msa0709480:three_prime_UTR 35.0%
ATGTTTGGTCAGTTAACTAC+TGG - chr5_1:640351-640370 Msa0709480:three_prime_UTR 35.0%
! ATTACATGTGTCGGTATTGT+TGG - chr5_1:640519-640538 Msa0709480:CDS 35.0%
!! CTCTTTTAGAAGCTGATGTA+AGG - chr5_1:640632-640651 Msa0709480:intron 35.0%
TAAGTCTTCCTGTTGTAAGA+AGG - chr5_1:640742-640761 Msa0709480:intron 35.0%
ACCTTAACCAATTGTTGATC+GGG + chr5_1:640825-640844 None:intergenic 35.0%
GACCTTAACCAATTGTTGAT+CGG + chr5_1:640826-640845 None:intergenic 35.0%
! ATGGATCACTCCATTTCTTT+TGG - chr5_1:641036-641055 Msa0709480:intron 35.0%
!! CACTCCATTTCTTTTGGAAA+TGG - chr5_1:641042-641061 Msa0709480:intron 35.0%
CTCTCCATTTCCAAAAGAAA+TGG + chr5_1:641049-641068 None:intergenic 35.0%
!! CATTTCTTTTGGAAATGGAG+AGG - chr5_1:641047-641066 Msa0709480:intron 35.0%
! ACACCCATTTTGTTCTTGTA+TGG + chr5_1:641258-641277 None:intergenic 35.0%
!! ACAAAATGGGTGTTGATTGT+TGG - chr5_1:641265-641284 Msa0709480:intron 35.0%
!! CAAAATGGGTGTTGATTGTT+GGG - chr5_1:641266-641285 Msa0709480:intron 35.0%
!! GAATTGACTTTTGCCAAATC+TGG - chr5_1:641342-641361 Msa0709480:intron 35.0%
! ATTTGCTAACTTTGCACACA+CGG + chr5_1:641415-641434 None:intergenic 35.0%
TCATATTCATCTGATCTCAG+GGG - chr5_1:641521-641540 Msa0709480:CDS 35.0%
TATTGACCAGCTTACTATCT+TGG - chr5_1:641588-641607 Msa0709480:intron 35.0%
ATTGACCAGCTTACTATCTT+GGG - chr5_1:641589-641608 Msa0709480:intron 35.0%
ATTAGAAGTGATGTGTTTCC+TGG - chr5_1:641786-641805 Msa0709480:intron 35.0%
TTAGAAGTGATGTGTTTCCT+GGG - chr5_1:641787-641806 Msa0709480:intron 35.0%
!! GAAATTATGCTAGCCTTGAT+AGG - chr5_1:641815-641834 Msa0709480:intron 35.0%
! TAGTTATAGCTTGTATCAGG+TGG - chr5_1:642035-642054 Msa0709480:intron 35.0%
!!! TGCTAAACAAGGTTTTGAAG+AGG - chr5_1:642104-642123 Msa0709480:intron 35.0%
ACAGATAGACAAAGCAATGA+TGG - chr5_1:642287-642306 Msa0709480:CDS 35.0%
ACAACTAACAAGACTTCTGT+TGG + chr5_1:642345-642364 None:intergenic 35.0%
!! AACAGAAGTCTTGTTAGTTG+TGG - chr5_1:642344-642363 Msa0709480:intron 35.0%
CAACTTAAGTATGTGGTCAA+GGG - chr5_1:642554-642573 Msa0709480:intron 35.0%
ATTTCTGTACGCATAAGTCA+GGG + chr5_1:642586-642605 None:intergenic 35.0%
AATTTCTGTACGCATAAGTC+AGG + chr5_1:642587-642606 None:intergenic 35.0%
!!! AGTAGATTTTGGGATGGTTT+TGG + chr5_1:642769-642788 None:intergenic 35.0%
GTTGAAAATTCTGGTATAGC+GGG + chr5_1:643017-643036 None:intergenic 35.0%
GCTCGTAATGTTGAAAATTC+TGG + chr5_1:643026-643045 None:intergenic 35.0%
!! ATGTGATTTCTAGTTGCATG+AGG - chr5_1:643076-643095 Msa0709480:intron 35.0%
ATAGGGAGTAATTGACACAA+AGG + chr5_1:643146-643165 None:intergenic 35.0%
! ATAATTTGAGACGCAGAGTA+TGG - chr5_1:643337-643356 Msa0709480:intron 35.0%
! TAATTTGAGACGCAGAGTAT+GGG - chr5_1:643338-643357 Msa0709480:intron 35.0%
GGTCTGTCAATAGTTAGTAA+AGG - chr5_1:643366-643385 Msa0709480:intron 35.0%
AGAATTAAGGTGGAATCTGT+AGG - chr5_1:643412-643431 Msa0709480:intron 35.0%
GTGAGTAACTCCAAATTTGT+TGG - chr5_1:643441-643460 Msa0709480:intron 35.0%
CTAACATCTCCCAACAAATT+TGG + chr5_1:643454-643473 None:intergenic 35.0%
!! CAAATTTGTTGGGAGATGTT+AGG - chr5_1:643452-643471 Msa0709480:CDS 35.0%
ATCTGGAAAGCCAATTAAGT+TGG - chr5_1:643831-643850 Msa0709480:intron 35.0%
TTTAGGGATAGTTCATATGC+GGG + chr5_1:644198-644217 None:intergenic 35.0%
!! ATTTGGTGCCTTATAGCAAT+TGG - chr5_1:644244-644263 Msa0709480:CDS 35.0%
!! TTTGGTGCCTTATAGCAATT+GGG - chr5_1:644245-644264 Msa0709480:CDS 35.0%
!! TAAGGTTGATGGACTAAACT+TGG + chr5_1:644299-644318 None:intergenic 35.0%
!!! ATGCTCCATTTTAAGGTTGA+TGG + chr5_1:644310-644329 None:intergenic 35.0%
! ATACTCGATGCTCCATTTTA+AGG + chr5_1:644317-644336 None:intergenic 35.0%
AGAGAGGAATTTGGAGATTA+TGG - chr5_1:644440-644459 Msa0709480:intron 35.0%
! CCTCTGGAAATAAACAAGAA+AGG + chr5_1:644561-644580 None:intergenic 35.0%
! CCTTTCTTGTTTATTTCCAG+AGG - chr5_1:644558-644577 Msa0709480:intron 35.0%
CTTGTTTATTTCCAGAGGAA+AGG - chr5_1:644563-644582 Msa0709480:intron 35.0%
GAAATAGTTGAGCTACAAGT+TGG + chr5_1:644792-644811 None:intergenic 35.0%
TCCTCAAGATTACTAAGTGT+TGG + chr5_1:644868-644887 None:intergenic 35.0%
ACTGATGTGCATTTAATCCA+CGG - chr5_1:645387-645406 Msa0709480:intron 35.0%
ATTCAGAATATCTTCATCCG+TGG + chr5_1:645407-645426 None:intergenic 35.0%
AAAACATCCTAGTGAAGCTA+TGG - chr5_1:645553-645572 Msa0709480:CDS 35.0%
AAAACATCCTAGTGAAGCTA+TGG - chr5_1:645553-645572 Msa0709480:CDS 35.0%
TGACATGCAACAATATGATG+GGG - chr5_1:645860-645879 Msa0709480:intron 35.0%
AATTTGGATCAACATGTCAC+TGG - chr5_1:645891-645910 Msa0709480:intron 35.0%
TGAATCGATCTAACAATGGA+AGG + chr5_1:645960-645979 None:intergenic 35.0%
! TATAGTAATGAGTGTTGTCC+TGG - chr5_1:645984-646003 Msa0709480:CDS 35.0%
! GTAGTAGTACTGAGTTGAGT+TGG - chr5_1:640011-640030 Msa0709480:three_prime_UTR 40.0%
AGAAGAAGAAGAAGAAGAGG+AGG + chr5_1:640106-640125 None:intergenic 40.0%
CGAAGAAGAAGAAGAAGAAG+AGG + chr5_1:640109-640128 None:intergenic 40.0%
GGTTTCAGAAAGAGATATGG+GGG - chr5_1:640259-640278 Msa0709480:three_prime_UTR 40.0%
AAGCGTAACTGTGAGAAGAA+TGG - chr5_1:640296-640315 Msa0709480:three_prime_UTR 40.0%
! TTCTCCTTTGAGTTTGTTCC+AGG + chr5_1:640388-640407 None:intergenic 40.0%
TGGAACAAACTCAAAGGAGA+AGG - chr5_1:640387-640406 Msa0709480:three_prime_UTR 40.0%
!! ATTTGACTTGGTTTGTGCAG+AGG - chr5_1:640561-640580 Msa0709480:CDS 40.0%
AGGCTCCACAATATTGTCTT+TGG + chr5_1:640593-640612 None:intergenic 40.0%
TGCACAAACCTTCTTACAAC+AGG + chr5_1:640753-640772 None:intergenic 40.0%
AGTCAAACCCGATCAACAAT+TGG - chr5_1:640815-640834 Msa0709480:intron 40.0%
ACCCGATCAACAATTGGTTA+AGG - chr5_1:640821-640840 Msa0709480:intron 40.0%
GAACTTGTACAATTGATGGG+TGG - chr5_1:641309-641328 Msa0709480:intron 40.0%
!!! TGGTCCCACTGTCATTTTAT+TGG - chr5_1:641362-641381 Msa0709480:intron 40.0%
CCAGCCAATAAAATGACAGT+GGG + chr5_1:641369-641388 None:intergenic 40.0%
TCCAGCCAATAAAATGACAG+TGG + chr5_1:641370-641389 None:intergenic 40.0%
!! ATTTTATTGGCTGGACTCCA+GGG - chr5_1:641375-641394 Msa0709480:intron 40.0%
TAGAAGGTGATGAAGGAGAT+TGG + chr5_1:641461-641480 None:intergenic 40.0%
TCGTTTCAATAAGGCGAAGA+AGG + chr5_1:641500-641519 None:intergenic 40.0%
GTTTACCCAAGATAGTAAGC+TGG + chr5_1:641597-641616 None:intergenic 40.0%
GCTTACTATCTTGGGTAAAC+AGG - chr5_1:641597-641616 Msa0709480:intron 40.0%
ACTACAATGCACGTTCTTCA+TGG + chr5_1:641764-641783 None:intergenic 40.0%
TAGCATAATTTCAGTAGCCC+AGG + chr5_1:641807-641826 None:intergenic 40.0%
! CCTTGTTTAGCAATGTCTGA+TGG + chr5_1:642096-642115 None:intergenic 40.0%
CCATCAGACATTGCTAAACA+AGG - chr5_1:642093-642112 Msa0709480:intron 40.0%
TTATTGTTGACACTGCTGGT+AGG - chr5_1:642151-642170 Msa0709480:intron 40.0%
TTAGTTGTGGATGCTATGAC+AGG - chr5_1:642357-642376 Msa0709480:intron 40.0%
TAGTTGTGGATGCTATGACA+GGG - chr5_1:642358-642377 Msa0709480:intron 40.0%
TACCAAATTGGTGTAATCCG+AGG - chr5_1:642526-642545 Msa0709480:intron 40.0%
ACCAAATTGGTGTAATCCGA+GGG - chr5_1:642527-642546 Msa0709480:intron 40.0%
! ATACTTAAGTTGCTTCCCCT+CGG + chr5_1:642546-642565 None:intergenic 40.0%
GCAACTTAAGTATGTGGTCA+AGG - chr5_1:642553-642572 Msa0709480:intron 40.0%
! AGAAATTCACCTTCTGAGAG+AGG - chr5_1:642600-642619 Msa0709480:intron 40.0%
TGTAAAGACCAACTCATTCG+AGG + chr5_1:642649-642668 None:intergenic 40.0%
!! CAGTGAAGTAGATTTTGGGA+TGG + chr5_1:642775-642794 None:intergenic 40.0%
!! ACCATCTAGCTTTGTCAAGA+TGG + chr5_1:642860-642879 None:intergenic 40.0%
AAGCTAGATGGTGATTCAAG+AGG - chr5_1:642868-642887 Msa0709480:intron 40.0%
GGTTAAGACGAGAACAAGTA+AGG + chr5_1:642986-643005 None:intergenic 40.0%
ACTAACTATTGACAGACCAG+AGG + chr5_1:643364-643383 None:intergenic 40.0%
AGTCCTCTGTATACAACTCT+AGG + chr5_1:643492-643511 None:intergenic 40.0%
TTTCCAGATACCTGTCATCA+TGG + chr5_1:643820-643839 None:intergenic 40.0%
!! GGAAAGCCAATTAAGTTGGT+AGG - chr5_1:643835-643854 Msa0709480:intron 40.0%
! CACTCATGATCTTCTTTTGC+AGG + chr5_1:644070-644089 None:intergenic 40.0%
AACTCGTACTGTTGCACAAA+TGG - chr5_1:644121-644140 Msa0709480:intron 40.0%
ACTCGTACTGTTGCACAAAT+GGG - chr5_1:644122-644141 Msa0709480:intron 40.0%
CTTTCCTCCCAATTGCTATA+AGG + chr5_1:644255-644274 None:intergenic 40.0%
ATAGCAATTGGGAGGAAAGT+AGG - chr5_1:644256-644275 Msa0709480:CDS 40.0%
ATAATAGAAGCAATGACCCC+TGG - chr5_1:644468-644487 Msa0709480:intron 40.0%
! AACTCTTTTCCTCCTAACAG+GGG + chr5_1:644614-644633 None:intergenic 40.0%
! CAACTCTTTTCCTCCTAACA+GGG + chr5_1:644615-644634 None:intergenic 40.0%
AAAAGAGTTGCTCAGGATTC+AGG - chr5_1:644625-644644 Msa0709480:intron 40.0%
AAAGAGTTGCTCAGGATTCA+GGG - chr5_1:644626-644645 Msa0709480:intron 40.0%
TAATAGTGACCTTCGAAGTG+TGG - chr5_1:644705-644724 Msa0709480:intron 40.0%
GTATAGAAACCACACTTCGA+AGG + chr5_1:644717-644736 None:intergenic 40.0%
TGTTCGGATGAAGAACCTAA+TGG - chr5_1:644819-644838 Msa0709480:intron 40.0%
GTTCGGATGAAGAACCTAAT+GGG - chr5_1:644820-644839 Msa0709480:intron 40.0%
! GAAGAACCTAATGGGTGTAA+TGG - chr5_1:644828-644847 Msa0709480:intron 40.0%
! AACCTAATGGGTGTAATGGA+AGG - chr5_1:644832-644851 Msa0709480:intron 40.0%
GCCAACACTTAGTAATCTTG+AGG - chr5_1:644864-644883 Msa0709480:intron 40.0%
AGCACTTAAGACAGAGGAAA+AGG - chr5_1:644888-644907 Msa0709480:intron 40.0%
CGAAAGATACCTGTAGATGT+GGG + chr5_1:645306-645325 None:intergenic 40.0%
CCACATCTACAGGTATCTTT+CGG - chr5_1:645304-645323 Msa0709480:intron 40.0%
CACATCTACAGGTATCTTTC+GGG - chr5_1:645305-645324 Msa0709480:intron 40.0%
!!! CCTTCTACACCTTTTTTAGC+CGG - chr5_1:645530-645549 Msa0709480:CDS 40.0%
! GGATGTTTTCCGGCTAAAAA+AGG + chr5_1:645542-645561 None:intergenic 40.0%
! AGCTTCACTAGGATGTTTTC+CGG + chr5_1:645552-645571 None:intergenic 40.0%
TTCTTCTCCATAGCTTCACT+AGG + chr5_1:645563-645582 None:intergenic 40.0%
! AGCTTCACTAGGATGTTTTC+TGG + chr5_1:645552-645571 None:intergenic 40.0%
TTCTTCTCCATAGCTTCACT+AGG + chr5_1:645563-645582 None:intergenic 40.0%
TTCTGCATTCTGCCTATATC+AGG - chr5_1:645716-645735 Msa0709480:CDS 40.0%
AGAGTCAAGGAGGTTATTTG+CGG - chr5_1:645773-645792 Msa0709480:intron 40.0%
GACATGCAACAATATGATGG+GGG - chr5_1:645861-645880 Msa0709480:intron 40.0%
! AACAATATGATGGGGGAGTT+TGG - chr5_1:645868-645887 Msa0709480:intron 40.0%
CCTAAATTTCACCAAACTCC+AGG + chr5_1:646005-646024 None:intergenic 40.0%
! CCTGGAGTTTGGTGAAATTT+AGG - chr5_1:646002-646021 Msa0709480:CDS 40.0%
!! CTGAGTTGAGTTGGTGAAGA+TGG - chr5_1:640020-640039 Msa0709480:three_prime_UTR 45.0%
AAGGTTCGATGATGAGAGAG+AGG + chr5_1:640078-640097 None:intergenic 45.0%
AGAAGAAGAAGAAGAGGAGG+AGG + chr5_1:640103-640122 None:intergenic 45.0%
CAGAAGAATAGGAGATGACG+TGG + chr5_1:640183-640202 None:intergenic 45.0%
GGATATGATTCGTCCAGTTG+TGG - chr5_1:640317-640336 Msa0709480:three_prime_UTR 45.0%
TCTGCCTGGAACAAACTCAA+AGG - chr5_1:640381-640400 Msa0709480:three_prime_UTR 45.0%
TGGAGCCTATGCGAGATATT+AGG - chr5_1:640605-640624 Msa0709480:intron 45.0%
GCTCTCCTAATATCTCGCAT+AGG + chr5_1:640613-640632 None:intergenic 45.0%
TGCATGCATGTTGTGTTTGC+AGG - chr5_1:640719-640738 Msa0709480:intron 45.0%
TGTGCAATCTGTTACCGATC+AGG - chr5_1:640767-640786 Msa0709480:intron 45.0%
GAGAGGATCTCAACTCATTG+TGG - chr5_1:641064-641083 Msa0709480:intron 45.0%
GGGGACTTGTCCACTTTATA+CGG + chr5_1:641124-641143 None:intergenic 45.0%
! TGTACAATTGATGGGTGGAG+AGG - chr5_1:641314-641333 Msa0709480:intron 45.0%
AATGACAGTGGGACCAGATT+TGG + chr5_1:641358-641377 None:intergenic 45.0%
!!! CCCACTGTCATTTTATTGGC+TGG - chr5_1:641366-641385 Msa0709480:intron 45.0%
!! CATTTTATTGGCTGGACTCC+AGG - chr5_1:641374-641393 Msa0709480:intron 45.0%
AAGAGTTGCATGCTAGTTGC+CGG - chr5_1:641544-641563 Msa0709480:CDS 45.0%
AGCAGGTCTATAAACATCCC+CGG + chr5_1:641566-641585 None:intergenic 45.0%
TGCTAAAGCAGCACCTATCA+AGG + chr5_1:641831-641850 None:intergenic 45.0%
CGGTACCTGCTGTATATACA+GGG + chr5_1:642065-642084 None:intergenic 45.0%
TCGGTACCTGCTGTATATAC+AGG + chr5_1:642066-642085 None:intergenic 45.0%
GTGGTTATTGTTGACACTGC+TGG - chr5_1:642147-642166 Msa0709480:intron 45.0%
CCAAATTGGTGTAATCCGAG+GGG - chr5_1:642528-642547 Msa0709480:intron 45.0%
GGGGAAGCAACTTAAGTATG+TGG - chr5_1:642547-642566 Msa0709480:intron 45.0%
GCCATCTTGACAAAGCTAGA+TGG - chr5_1:642856-642875 Msa0709480:intron 45.0%
CTAGATGGTGATTCAAGAGG+TGG - chr5_1:642871-642890 Msa0709480:intron 45.0%
!! AGCAGCTTTGAGTGTCAAAG+AGG - chr5_1:642894-642913 Msa0709480:intron 45.0%
!! CTGGTATAGCGGGTAACTAT+TGG + chr5_1:643007-643026 None:intergenic 45.0%
AGTTAGTAAAGGGTTAGGGG+TGG - chr5_1:643377-643396 Msa0709480:intron 45.0%
GTTAGTAAAGGGTTAGGGGT+GGG - chr5_1:643378-643397 Msa0709480:intron 45.0%
TTGGGAGATGTTAGGAGCTT+TGG - chr5_1:643460-643479 Msa0709480:CDS 45.0%
CAGCCTAGAGTTGTATACAG+AGG - chr5_1:643486-643505 Msa0709480:CDS 45.0%
TTGGGTAGTTCCATGATGAC+AGG - chr5_1:643807-643826 Msa0709480:intron 45.0%
GTTCCATGATGACAGGTATC+TGG - chr5_1:643814-643833 Msa0709480:intron 45.0%
!! CCAATTAAGTTGGTAGGACG+CGG - chr5_1:643841-643860 Msa0709480:intron 45.0%
!! CAATTAAGTTGGTAGGACGC+GGG - chr5_1:643842-643861 Msa0709480:intron 45.0%
!! AATTAAGTTGGTAGGACGCG+GGG - chr5_1:643843-643862 Msa0709480:intron 45.0%
GGGAGATGTCCTTTCATTTG+TGG - chr5_1:643927-643946 Msa0709480:intron 45.0%
GATGCAACAAGAAGATGCTG+AGG - chr5_1:644043-644062 Msa0709480:CDS 45.0%
AGGAATCATCCCAATGACTC+GGG + chr5_1:644156-644175 None:intergenic 45.0%
CAGGAATCATCCCAATGACT+CGG + chr5_1:644157-644176 None:intergenic 45.0%
CATTGGGATGATTCCTGGTA+TGG - chr5_1:644160-644179 Msa0709480:intron 45.0%
GATGATTCCTGGTATGGCAA+AGG - chr5_1:644166-644185 Msa0709480:intron 45.0%
TTCCTGGTATGGCAAAGGTA+TGG - chr5_1:644171-644190 Msa0709480:intron 45.0%
CATCTCATCTGCATGCTTAC+AGG - chr5_1:644392-644411 Msa0709480:intron 45.0%
TCTGCTTCTCGAATTTGAGC+AGG + chr5_1:644423-644442 None:intergenic 45.0%
CTCAAATTCGAGAAGCAGAG+AGG - chr5_1:644424-644443 Msa0709480:intron 45.0%
TCGAGAAGCAGAGAGGAATT+TGG - chr5_1:644431-644450 Msa0709480:intron 45.0%
AAGGGAAAAGCCAGAACTGT+TGG - chr5_1:644582-644601 Msa0709480:intron 45.0%
! GCAACTCTTTTCCTCCTAAC+AGG + chr5_1:644616-644635 None:intergenic 45.0%
TAGGAGGAAAAGAGTTGCTC+AGG - chr5_1:644618-644637 Msa0709480:intron 45.0%
CACCTTCCATTACACCCATT+AGG + chr5_1:644837-644856 None:intergenic 45.0%
! CTAATGGGTGTAATGGAAGG+TGG - chr5_1:644835-644854 Msa0709480:intron 45.0%
!! TGAGGAAGCACTTAAGACAG+AGG - chr5_1:644882-644901 Msa0709480:intron 45.0%
! AAAGTGGGAGTGCAGTAGTT+AGG - chr5_1:645106-645125 Msa0709480:intron 45.0%
GAGTGCAGTAGTTAGGACTT+GGG - chr5_1:645113-645132 Msa0709480:intron 45.0%
CCGAAAGATACCTGTAGATG+TGG + chr5_1:645307-645326 None:intergenic 45.0%
AGATTCCACAAACATGGGTG+TGG - chr5_1:645491-645510 Msa0709480:intron 45.0%
TCAAACCACACCCATGTTTG+TGG + chr5_1:645499-645518 None:intergenic 45.0%
! CCGGCTAAAAAAGGTGTAGA+AGG + chr5_1:645533-645552 None:intergenic 45.0%
GGAGAAAGAAAGCAGAGTCA+AGG - chr5_1:645760-645779 Msa0709480:intron 45.0%
GAAAGAAAGCAGAGTCAAGG+AGG - chr5_1:645763-645782 Msa0709480:intron 45.0%
TATTTGCGGACTCAACGTCA+AGG - chr5_1:645787-645806 Msa0709480:intron 45.0%
! TTTTTGCTCCCAAATCCACG+AGG + chr5_1:645819-645838 None:intergenic 45.0%
! TGATGGGGGAGTTTGGAATT+TGG - chr5_1:645875-645894 Msa0709480:intron 45.0%
! ATGAGTGTTGTCCTGGAGTT+TGG - chr5_1:645991-646010 Msa0709480:CDS 45.0%
GCAGAAATGAGATGTACGTG+CGG - chr5_1:646024-646043 Msa0709480:CDS 45.0%
CAGAAATGAGATGTACGTGC+GGG - chr5_1:646025-646044 Msa0709480:CDS 45.0%
AAGAGACAGACAGATGATGC+AGG + chr5_1:646243-646262 None:intergenic 45.0%
CATCTGTCTGTCTCTTGAAC+AGG - chr5_1:646247-646266 Msa0709480:CDS 45.0%
AGAAGAAGAGGAGGAGGAGA+AGG + chr5_1:640097-640116 None:intergenic 50.0%
TGATTCGTCCAGTTGTGGTC+AGG - chr5_1:640322-640341 Msa0709480:three_prime_UTR 50.0%
GATTCGTCCAGTTGTGGTCA+GGG - chr5_1:640323-640342 Msa0709480:three_prime_UTR 50.0%
ATTTCAGCCCTGACCACAAC+TGG + chr5_1:640333-640352 None:intergenic 50.0%
GTGGTCAGGGCTGAAATGTT+TGG - chr5_1:640336-640355 Msa0709480:three_prime_UTR 50.0%
!! CTACTGGTCTTGAATCTGCC+TGG - chr5_1:640367-640386 Msa0709480:three_prime_UTR 50.0%
TCCACTCCACACTACTCACA+CGG - chr5_1:640448-640467 Msa0709480:three_prime_UTR 50.0%
ATCTGTTACCGATCAGGCTG+TGG - chr5_1:640773-640792 Msa0709480:intron 50.0%
TCTGTTACCGATCAGGCTGT+GGG - chr5_1:640774-640793 Msa0709480:intron 50.0%
! ATTGATGGGTGGAGAGGTCT+CGG - chr5_1:641320-641339 Msa0709480:intron 50.0%
AGAGTTGCATGCTAGTTGCC+GGG - chr5_1:641545-641564 Msa0709480:CDS 50.0%
GTAAGCTGGTCAATAGCAGC+AGG + chr5_1:641583-641602 None:intergenic 50.0%
GACGTCCCTGTATATACAGC+AGG - chr5_1:642057-642076 Msa0709480:intron 50.0%
CCCCTCGGATTACACCAATT+TGG + chr5_1:642531-642550 None:intergenic 50.0%
CAAGAGTTGCCTCTCTCAGA+AGG + chr5_1:642612-642631 None:intergenic 50.0%
CTCCAGATCCTCGAATGAGT+TGG - chr5_1:642638-642657 Msa0709480:intron 50.0%
GACCAACTCATTCGAGGATC+TGG + chr5_1:642643-642662 None:intergenic 50.0%
CCGCGTCCTACCAACTTAAT+TGG + chr5_1:643844-643863 None:intergenic 50.0%
CTAGTATTCGCCCAGCCATT+CGG + chr5_1:643903-643922 None:intergenic 50.0%
GCTGGGCGAATACTAGGAAT+GGG - chr5_1:643907-643926 Msa0709480:intron 50.0%
GTTCTGTGTCCCGAGTCATT+GGG - chr5_1:644144-644163 Msa0709480:intron 50.0%
CGAGTCATTGGGATGATTCC+TGG - chr5_1:644155-644174 Msa0709480:intron 50.0%
GTCCATACCTTTGCCATACC+AGG + chr5_1:644176-644195 None:intergenic 50.0%
GGTGCCTTATAGCAATTGGG+AGG - chr5_1:644248-644267 Msa0709480:CDS 50.0%
!!! TCTGGCTTTTCCCTTTCCTC+TGG + chr5_1:644577-644596 None:intergenic 50.0%
TGTTGGCAGAATCCCCTGTT+AGG - chr5_1:644599-644618 Msa0709480:intron 50.0%
TTCAGGGAAAACAGAGCAGC+AGG - chr5_1:644642-644661 Msa0709480:intron 50.0%
GGAGTGCAGTAGTTAGGACT+TGG - chr5_1:645112-645131 Msa0709480:intron 50.0%
TGCAGTAGTTAGGACTTGGG+AGG - chr5_1:645116-645135 Msa0709480:intron 50.0%
TCTACAGGTATCTTTCGGGC+AGG - chr5_1:645309-645328 Msa0709480:intron 50.0%
!! AGAGAGGCGTCGACAAATGG+CGG + chr5_1:640062-640081 None:intergenic 55.0%
!! GAGAGAGAGGCGTCGACAAA+TGG + chr5_1:640065-640084 None:intergenic 55.0%
TCCGTGTGAGTAGTGTGGAG+TGG + chr5_1:640452-640471 None:intergenic 55.0%
GTGTCTCCGTGTGAGTAGTG+TGG + chr5_1:640457-640476 None:intergenic 55.0%
TCCAACACCCACAGCCTGAT+CGG + chr5_1:640784-640803 None:intergenic 55.0%
GAGTTGCATGCTAGTTGCCG+GGG - chr5_1:641546-641565 Msa0709480:CDS 55.0%
ATGACAGGGCAAGAAGCAGC+AGG - chr5_1:642372-642391 Msa0709480:intron 55.0%
ACCTTTCTACCCCGACCGAA+TGG - chr5_1:643885-643904 Msa0709480:intron 55.0%
TATTCGCCCAGCCATTCGGT+CGG + chr5_1:643899-643918 None:intergenic 55.0%
CGAATGGCTGGGCGAATACT+AGG - chr5_1:643901-643920 Msa0709480:intron 55.0%
GGCTGGGCGAATACTAGGAA+TGG - chr5_1:643906-643925 Msa0709480:intron 55.0%
GGTTCTGTGTCCCGAGTCAT+TGG - chr5_1:644143-644162 Msa0709480:intron 55.0%
GGGGATTCTGCCAACAGTTC+TGG + chr5_1:644595-644614 None:intergenic 55.0%
TGGCAGAATCCCCTGTTAGG+AGG - chr5_1:644602-644621 Msa0709480:intron 55.0%
TGCCTATATCAGGCTCCACC+TGG - chr5_1:645726-645745 Msa0709480:CDS 55.0%
TGCCAGGTGGAGCCTGATAT+AGG + chr5_1:645731-645750 None:intergenic 55.0%
TTTCTCCTCCTTGCAGTGCC+AGG + chr5_1:645747-645766 None:intergenic 55.0%
AGGCAACCTCCTCGTGGATT+TGG - chr5_1:645807-645826 Msa0709480:intron 55.0%
GGCAACCTCCTCGTGGATTT+GGG - chr5_1:645808-645827 Msa0709480:intron 55.0%
TTGCTCCCAAATCCACGAGG+AGG + chr5_1:645816-645835 None:intergenic 55.0%
!! GAGAGGCGTCGACAAATGGC+GGG + chr5_1:640061-640080 None:intergenic 60.0%
ACCGATCAGGCTGTGGGTGT+TGG - chr5_1:640780-640799 Msa0709480:intron 60.0%
!! GTGGGTGTTGGAGTCACTCG+AGG - chr5_1:640792-640811 Msa0709480:intron 60.0%
TTGGCTGGACTCCAGGGAGT+TGG - chr5_1:641381-641400 Msa0709480:intron 60.0%
TGGCTGGACTCCAGGGAGTT+GGG - chr5_1:641382-641401 Msa0709480:intron 60.0%
CGGTTGTCTTCCCAACTCCC+TGG + chr5_1:641395-641414 None:intergenic 60.0%
TGACACTGCTGGTAGGCTGC+AGG - chr5_1:642158-642177 Msa0709480:intron 60.0%
AGACGCAGAGTATGGGCCTC+TGG - chr5_1:643345-643364 Msa0709480:intron 60.0%
GCCATTCGGTCGGGGTAGAA+AGG + chr5_1:643889-643908 None:intergenic 60.0%
TTCTACCCCGACCGAATGGC+TGG - chr5_1:643889-643908 Msa0709480:intron 60.0%
TCTACCCCGACCGAATGGCT+GGG - chr5_1:643890-643909 Msa0709480:intron 60.0%
ATTCGCCCAGCCATTCGGTC+GGG + chr5_1:643898-643917 None:intergenic 60.0%
ACGTCAAGGCAACCTCCTCG+TGG - chr5_1:645801-645820 Msa0709480:intron 60.0%
TTCGCCCAGCCATTCGGTCG+GGG + chr5_1:643897-643916 None:intergenic 65.0%
AGGCTCCACCTGGCACTGCA+AGG - chr5_1:645736-645755 Msa0709480:CDS 65.0%
CTCCACCTGGCACTGCAAGG+AGG - chr5_1:645739-645758 Msa0709480:CDS 65.0%
CTCCTCCTTGCAGTGCCAGG+TGG + chr5_1:645744-645763 None:intergenic 65.0%
GGTAGGACGCGGGGAACGCA+TGG - chr5_1:643852-643871 Msa0709480:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 639956 646402 639956 ID=Msa0709480;Name=Msa0709480
chr5_1 mRNA 639956 646402 639956 ID=Msa0709480-mRNA-1;Parent=Msa0709480;Name=Msa0709480-mRNA-1;_AED=0.08;_eAED=0.08;_QI=83|1|1|1|1|1|15|560|559
chr5_1 exon 639956 640620 639956 ID=Msa0709480-mRNA-1:exon:273;Parent=Msa0709480-mRNA-1
chr5_1 exon 641449 641574 641449 ID=Msa0709480-mRNA-1:exon:272;Parent=Msa0709480-mRNA-1
chr5_1 exon 641695 641780 641695 ID=Msa0709480-mRNA-1:exon:271;Parent=Msa0709480-mRNA-1
chr5_1 exon 641869 641944 641869 ID=Msa0709480-mRNA-1:exon:270;Parent=Msa0709480-mRNA-1
chr5_1 exon 642171 642314 642171 ID=Msa0709480-mRNA-1:exon:269;Parent=Msa0709480-mRNA-1
chr5_1 exon 642392 642529 642392 ID=Msa0709480-mRNA-1:exon:268;Parent=Msa0709480-mRNA-1
chr5_1 exon 643443 643543 643443 ID=Msa0709480-mRNA-1:exon:267;Parent=Msa0709480-mRNA-1
chr5_1 exon 643965 644067 643965 ID=Msa0709480-mRNA-1:exon:266;Parent=Msa0709480-mRNA-1
chr5_1 exon 644179 644304 644179 ID=Msa0709480-mRNA-1:exon:265;Parent=Msa0709480-mRNA-1
chr5_1 exon 644740 644817 644740 ID=Msa0709480-mRNA-1:exon:264;Parent=Msa0709480-mRNA-1
chr5_1 exon 644909 645061 644909 ID=Msa0709480-mRNA-1:exon:263;Parent=Msa0709480-mRNA-1
chr5_1 exon 645516 645617 645516 ID=Msa0709480-mRNA-1:exon:262;Parent=Msa0709480-mRNA-1
chr5_1 exon 645710 645777 645710 ID=Msa0709480-mRNA-1:exon:261;Parent=Msa0709480-mRNA-1
chr5_1 exon 645950 646091 645950 ID=Msa0709480-mRNA-1:exon:260;Parent=Msa0709480-mRNA-1
chr5_1 exon 646188 646402 646188 ID=Msa0709480-mRNA-1:exon:259;Parent=Msa0709480-mRNA-1
chr5_1 five_prime_UTR 646320 646402 646320 ID=Msa0709480-mRNA-1:five_prime_utr;Parent=Msa0709480-mRNA-1
chr5_1 CDS 646188 646319 646188 ID=Msa0709480-mRNA-1:cds;Parent=Msa0709480-mRNA-1
chr5_1 CDS 645950 646091 645950 ID=Msa0709480-mRNA-1:cds;Parent=Msa0709480-mRNA-1
chr5_1 CDS 645710 645777 645710 ID=Msa0709480-mRNA-1:cds;Parent=Msa0709480-mRNA-1
chr5_1 CDS 645516 645617 645516 ID=Msa0709480-mRNA-1:cds;Parent=Msa0709480-mRNA-1
chr5_1 CDS 644909 645061 644909 ID=Msa0709480-mRNA-1:cds;Parent=Msa0709480-mRNA-1
chr5_1 CDS 644740 644817 644740 ID=Msa0709480-mRNA-1:cds;Parent=Msa0709480-mRNA-1
chr5_1 CDS 644179 644304 644179 ID=Msa0709480-mRNA-1:cds;Parent=Msa0709480-mRNA-1
chr5_1 CDS 643965 644067 643965 ID=Msa0709480-mRNA-1:cds;Parent=Msa0709480-mRNA-1
chr5_1 CDS 643443 643543 643443 ID=Msa0709480-mRNA-1:cds;Parent=Msa0709480-mRNA-1
chr5_1 CDS 642392 642529 642392 ID=Msa0709480-mRNA-1:cds;Parent=Msa0709480-mRNA-1
chr5_1 CDS 642171 642314 642171 ID=Msa0709480-mRNA-1:cds;Parent=Msa0709480-mRNA-1
chr5_1 CDS 641869 641944 641869 ID=Msa0709480-mRNA-1:cds;Parent=Msa0709480-mRNA-1
chr5_1 CDS 641695 641780 641695 ID=Msa0709480-mRNA-1:cds;Parent=Msa0709480-mRNA-1
chr5_1 CDS 641449 641574 641449 ID=Msa0709480-mRNA-1:cds;Parent=Msa0709480-mRNA-1
chr5_1 CDS 640516 640620 640516 ID=Msa0709480-mRNA-1:cds;Parent=Msa0709480-mRNA-1
chr5_1 three_prime_UTR 639956 640515 639956 ID=Msa0709480-mRNA-1:three_prime_utr;Parent=Msa0709480-mRNA-1
Gene Sequence

>Msa0709480

ATGGAAGCAGTACTAGCGTCCCGCCATTTGTCGACGCCTCTCTCTCATCATCGAACCTTCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCGAACAAGCTTTGCTCTTCCCTTTCTTACAGAAATTCTTTCGCGAAAGAGATATGGGGGTTTGTTCAGTCGAAAAGCGTAACTGTGAGAAGAATGGATATGATTCGTCCAGTTGTGGTCAGGGCTGAAATGTTTGGTCAGTTAACTACTGGTCTTGAATCTGCCTGGAACAAACTCAAAGGAGAAGAGGTTTTGACCAAAGACAATATTGTGGAGCCTATGCGAGATATTAGGAGAGCTCTTTTAGAAGCTGATGTAAGTCTTCCTGTTGTAAGAAGGTTTGTGCAATCTGTTACCGATCAGGCTGTGGGTGTTGGAGTCACTCGAGGAGTCAAACCCGATCAACAATTGGTTAAGATTGTTCATGATGAACTTGTACAATTGATGGGTGGAGAGGTCTCGGAATTGACTTTTGCCAAATCTGGTCCCACTGTCATTTTATTGGCTGGACTCCAGGGAGTTGGGAAGACAACCGTGTGTGCAAAGTTAGCAAATTATTTCAAGAAACAGGGGAAGAGTTGCATGCTAGTTGCCGGGGATGTTTATAGACCTGCTGCTATTGACCAGCTTACTATCTTGGGTAAACAGGTGGACGTCCCTGTATATACAGCAGGTACCGATGTTAAACCATCAGACATTGCTAAACAAGGTTTTGAAGAGGCCAAAAAGAAGAAAATTGATGTGGTTATTGTTGACACTGCTGGTAGGCTGCAGATAGACAAAGCAATGATGGATGAGTTAAAAGATGTGAAACGGGTACTGAATCCAACAGAAGTCTTGTTAGTTGTGGATGCTATGACAGGGCAAGAAGCAGCAGCTTTGGTGACTACTTTCAATCTTGAGATTGGAATAACTGGTGCCATCTTGACAAAGCTAGATGGTGATTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCTGGAAAGCCAATTAAGTTGGTAGGACGCGGGGAACGCATGGAAGATCTTGAACCTTTCTACCCCGACCGAATGGCTGGGCGAATACTAGGAATGGGAGATGTCCTTTCATTTGTGGAGAAGGCACAAGAAGTTATGCAACAAGAAGATGCTGAGGACCTGCAAAAGAAGATCATGAGTGCAAAGTTTGACTTTAATGATTTTCTAAAGCAAACTCGTACTGTTGCACAAATGGGTTCTGTGTCCCGAGTCATTGGGATGATTCCTGGTATGGCAAAGGTTACTCCTGCTCAAATTCGAGAAGCAGAGAGGAATTTGGAGATTATGGAAGTGATAATAGAAGCAATGACCCCTGAGGAAAGGGAAAAGCCAGAACTGTTGGCAGAATCCCCTGTTAGGAGGAAAAGAGTTGCTCAGGATTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTTGTAGCTCAACTATTTCAAATGCGTGTTCGGATGAAGAACCTAATGGGTGTAATGGAAGGTGGTTCAATGCCAACACTTAGTAATCTTGAGGAAGCACTTAAGACAGAGGAAAAGGCTCCACCTGGCACTGCAAGGAGGAGAAAGAAAGCAGAGTCAAGGAGGTTATTTGCGGACTCAACGTCAAGGCAACCTCCTCGTGGATTTGGGAGCAAAAACTAA

Protein sequence

>Msa0709480

MEAVLASRHLSTPLSHHRTFSSSSSSSSSSNKLCSSLSYRNSFAKEIWGFVQSKSVTVRRMDMIRPVVVRAEMFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAVGVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKSGPTVILLAGLQGVGKTTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRTVAQMGSVSRVIGMIPGMAKVTPAQIREAERNLEIMEVIIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSMPTLSNLEEALKTEEKAPPGTARRRKKAESRRLFADSTSRQPPRGFGSKN*