AlfalfaGEDB | Msa1375630

M. sativa cultivar zhongmu-4 / Msa1375630

KEGG: K01872
GO: GO:0000003 GO:0000049 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004813 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006412 GO:0006418 GO:0006419 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016020 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0031406 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0036094 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01411.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375630	AES74340.2	97.762	983	13	4	1	977	1	980	0.0	1959

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375630	sp\|B9HQZ6\|SYAP_POPTR	77.158	915	206	1	63	977	83	994	0.0	1472

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375630	G7J996	97.762	983	13	4	1	977	1	980	0.0	1959

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1375630	0.855395	6.491236e-62	-8.615850e-47
Msa0000780	Msa1375630	0.843125	1.698652e-58	-8.615850e-47
Msa0001420	Msa1375630	0.825417	4.742495e-54	-8.615850e-47
Msa0001460	Msa1375630	0.864516	1.149203e-64	-8.615850e-47
Msa0001540	Msa1375630	0.861927	7.271713e-64	-8.615850e-47
Msa0001950	Msa1375630	0.803978	2.692874e-49	-8.615850e-47
Msa0002060	Msa1375630	0.808929	2.432299e-50	-8.615850e-47
Msa0003470	Msa1375630	0.876070	1.869564e-68	-8.615850e-47
Msa0004350	Msa1375630	0.835906	1.277158e-56	-8.615850e-47
Msa0005160	Msa1375630	0.839752	1.312684e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375630	MtrunA17_Chr3g0145961	97.762	983	13	4	1	977	1	980	0.0	1959
Msa1375630	MtrunA17_Chr4g0038011	35.181	830	448	21	80	851	52	849	3.66e-143	452
Msa1375630	MtrunA17_Chr4g0038031	37.155	471	255	12	83	529	16	469	3.51e-92	306

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375630	AT5G22800.1	69.876	966	284	4	16	975	12	976	0.0	1384
Msa1375630	AT5G22800.2	73.889	900	232	3	78	975	103	1001	0.0	1382
Msa1375630	AT1G50200.1	37.084	782	407	18	83	808	64	816	7.32e-158	491
Msa1375630	AT1G50200.2	37.084	782	407	18	83	808	64	816	9.37e-158	491

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Find 257 sgRNAs with CRISPR-Local

Find 723 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAACTCATGGTGAAA+GGG	0.521285	tig0019730:-67780	None:intergenic
AAAGAAGGTATGATGACGTG+AGG	0.668436	tig0019730:-60085	None:intergenic
AAAGAAGTGGCTGAAGAACG+CGG	0.692053	tig0019730:+61603	Msa1375630:CDS
AAAGTTGAGGCAACGAGCCA+AGG	0.572093	tig0019730:+62070	Msa1375630:CDS
AAATATTTGCCAAGTGTGTA+TGG	0.397453	tig0019730:-67364	None:intergenic
AAATGGTGATCCAGCCGTAC+AGG	0.500392	tig0019730:+61812	Msa1375630:CDS
AAATTATGTGGTGGTGGAGG+AGG	0.487864	tig0019730:+67227	Msa1375630:CDS
AACAAGCTATTCAATGGGCT+TGG	0.372665	tig0019730:+60148	Msa1375630:CDS
AACCTGAAGAAGTAACTGTG+AGG	0.719116	tig0019730:+64895	Msa1375630:CDS
AACTTCAATTGTAAGCCTCC+TGG	0.492349	tig0019730:-67487	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGAAGAAGAAGAAGATA+TGG	+	tig0019730:59512-59531	Msa1375630:exon	30.0%
TAATTAATTACCGGTAGAAG+TGG	-	tig0019730:59637-59656	None:intergenic	30.0%
CAATTAATACGAAGGAAAGA+AGG	-	tig0019730:59673-59692	None:intergenic	30.0%
ATTAAGAAATCTTTCCCGTA+TGG	-	tig0019730:59872-59891	None:intergenic	30.0%
CAATTCAAACCTATCTTTCT+TGG	+	tig0019730:59982-60001	Msa1375630:CDS	30.0%
ACACTAATCCATAATCTTTC+TGG	-	tig0019730:60204-60223	None:intergenic	30.0%
CAATACAACAAAAAAGACGA+TGG	+	tig0019730:60625-60644	Msa1375630:CDS	30.0%
GACTATCTTCATACAAATTG+TGG	+	tig0019730:61082-61101	Msa1375630:intron	30.0%
ATCTCCTACAATCTAAGTAA+AGG	-	tig0019730:61166-61185	None:intergenic	30.0%
TATCCAATAAATTCAGTGTC+AGG	-	tig0019730:61750-61769	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0019730	gene	59441	67819	59441	ID=Msa1375630;Name=Msa1375630
tig0019730	mRNA	59441	67819	59441	ID=Msa1375630-mRNA-1;Parent=Msa1375630;Name=Msa1375630-mRNA-1;_AED=0.10;_eAED=0.10;_QI=90\|1\|1\|1\|1\|1\|10\|458\|977
tig0019730	exon	59441	59645	59441	ID=Msa1375630-mRNA-1:exon:4600;Parent=Msa1375630-mRNA-1
tig0019730	exon	59740	60266	59740	ID=Msa1375630-mRNA-1:exon:4601;Parent=Msa1375630-mRNA-1
tig0019730	exon	60353	60487	60353	ID=Msa1375630-mRNA-1:exon:4602;Parent=Msa1375630-mRNA-1
tig0019730	exon	60574	60723	60574	ID=Msa1375630-mRNA-1:exon:4603;Parent=Msa1375630-mRNA-1
tig0019730	exon	60963	61073	60963	ID=Msa1375630-mRNA-1:exon:4604;Parent=Msa1375630-mRNA-1
tig0019730	exon	61174	62091	61174	ID=Msa1375630-mRNA-1:exon:4605;Parent=Msa1375630-mRNA-1
tig0019730	exon	62267	62539	62267	ID=Msa1375630-mRNA-1:exon:4606;Parent=Msa1375630-mRNA-1
tig0019730	exon	63652	63861	63652	ID=Msa1375630-mRNA-1:exon:4607;Parent=Msa1375630-mRNA-1
tig0019730	exon	64891	65048	64891	ID=Msa1375630-mRNA-1:exon:4608;Parent=Msa1375630-mRNA-1
tig0019730	exon	67025	67819	67025	ID=Msa1375630-mRNA-1:exon:4609;Parent=Msa1375630-mRNA-1
tig0019730	five_prime_UTR	59441	59530	59441	ID=Msa1375630-mRNA-1:five_prime_utr;Parent=Msa1375630-mRNA-1
tig0019730	CDS	59531	59645	59531	ID=Msa1375630-mRNA-1:cds;Parent=Msa1375630-mRNA-1
tig0019730	CDS	59740	60266	59740	ID=Msa1375630-mRNA-1:cds;Parent=Msa1375630-mRNA-1
tig0019730	CDS	60353	60487	60353	ID=Msa1375630-mRNA-1:cds;Parent=Msa1375630-mRNA-1
tig0019730	CDS	60574	60723	60574	ID=Msa1375630-mRNA-1:cds;Parent=Msa1375630-mRNA-1
tig0019730	CDS	60963	61073	60963	ID=Msa1375630-mRNA-1:cds;Parent=Msa1375630-mRNA-1
tig0019730	CDS	61174	62091	61174	ID=Msa1375630-mRNA-1:cds;Parent=Msa1375630-mRNA-1
tig0019730	CDS	62267	62539	62267	ID=Msa1375630-mRNA-1:cds;Parent=Msa1375630-mRNA-1
tig0019730	CDS	63652	63861	63652	ID=Msa1375630-mRNA-1:cds;Parent=Msa1375630-mRNA-1
tig0019730	CDS	64891	65048	64891	ID=Msa1375630-mRNA-1:cds;Parent=Msa1375630-mRNA-1
tig0019730	CDS	67025	67361	67025	ID=Msa1375630-mRNA-1:cds;Parent=Msa1375630-mRNA-1
tig0019730	three_prime_UTR	67362	67819	67362	ID=Msa1375630-mRNA-1:three_prime_utr;Parent=Msa1375630-mRNA-1

Gene Sequence

>Msa1375630

ATGGTTATCCATTCCTTGATTAATAATTATTCAGGTTTGGCGGTTCCACTCTTCCCATTGCTGCTTCCGCTTCCAAAACTTGCTGCTATTCCCTCTGCTACTTCCACTTCTACCGCAGCAGCAGCAGCAGCAGGAGGATTTATCTCTTTCAAACAACTACATCTACGTCGTCGTCGTCGTCTTCTTCCCTTCTGTACATCATCGTCGCAAGACAATGATAATAATAATTGTGTGAGTGGAGATTCCATACGGGAAAGATTTCTTAATTTTTATGCTTCCCGTGGTCACAAGGTCCTTCCTAGTGCTTCTCTCGTTCCAGATGACCCCACTGTTCTCCTCACCATTGCTGGAATGCTTCAATTCAAACCTATCTTTCTTGGAAAACTTCCTAGACAAGTCCCTCGCGCTACTACTTCACAACGCTGCATCCGTACTAATGATATCAACAATGTTGGTCATACCTCACGTCATCATACCTTCTTTGAGATGCTTGGTAACTTCAGCTTTGGTGATTACTTCAAAAAACAAGCTATTCAATGGGCTTGGGACTTATCTACCATTGAGTTTGGTTTGCCTCCAGAAAGATTATGGATTAGTGTTTACCAAGACGATCATGAGACTTTCCAGTTATGGTCTCAACAGGTTGGTGTCCCCGTTGACCGAATTAAAAGGTTGGGTGAAGAGGATAACTTTTGGACAAGCGGAGTCACCGGTCCCTGCGGTCCTTGCTCTGAAATTTATTATGATTTTCATCCTGAGAGGGGATACGCCGATGTTGATCTTGGTGATGATACACGGTTTATAGAGTTCTACAATTTAGTATTCATGCAATACAACAAAAAAGACGATGGTTCTCTCGAACCTCTAAAGCAGAAGAACATAGATACTGGGCTTGGTCTGGAGCGCATGGCTCGCATTCTTCAAAAGGCTCCAAATAACTATGAAACTGACTTGATTCTCCCCATCATAGAGAAGGCCTCTGAATTAGCAAATATTTCATATGGCATATCTGATGACCAGACAAAGAGGTATCTGAAAATTGTAGGAGATCACATGCGTGCAATTGTGTTTCTCATCTCTGATGGCGTTGTACCATCAAATGTTGGGAGGGGTTATGTAGTTCGACGGCTTATCAGAAGAGTTGTTCGTACAGGCAGGTTGCTTGGTATAAAAGGTGATGGTAGGGGAGACCCTGAAGGAGCATTTTTACCTATAATTGCTCAGAAAGTATTAGAGTTAAGCACTCACATTGATGCTGATGTGAAGAATAGAGCACCCCGTATCCTTGAGGAGTTGAAGAGAGAAGAGCTTCGATTTGTGCAGACGCTGGAGAGAGGAGAGAAATTGCTTGAGGAGAAGCTTGTTGATGCTATATCAAGTGCTGAAAGAAGTGGAACTGTACCTTGCTTGGCTGGTGAAGATGTGTTTATTTTGTATGATACTTATGGTTTCCCTATGGAAATAACAAAAGAAGTGGCTGAAGAACGCGGTGTGAGTATTGACATGAATGGTTTTGATATTGAGATGGAGAAGCAAAGACGTCAATCTCAAGCTGCACACAATACTGTCAAGCTTGCCATTGGAAGCGGGACAAATATTGCAGACAATGTACCTGACACTGAATTTATTGGATATGAAAGTCTTTATTGTAAAGCAATTGTAGCCAGCCTAGTGGTAAATGGTGATCCAGCCGTACAGGTTAGGGAAGGGAGTAATGTGGAAATTTTGCTGAACAAGACTCCATTTTATGCTGAATCAGGAGGACAAATTGGAGATCATGGTTTTCTGTATATATCAGAGGGTGAGAATCAACCTAAGGCTGTCGTGGAGATAATAGATGTTCAGAAGTCTTTTGGCAATATATTTGTTCACAAGGGTACAGTCCAAAAGGGTGTTCTAGAGGTTGGCAAACAAGTGGAAGCAACAGTGGATGTAAAGTTGAGGCAACGAGCCAAGGTTCATCATACCGCTACTCATTTACTACAAGCTGCGCTTAAAAAGGTCATCGGTCAGGAGACCTCTCAAGCTGGTTCTTTGGTGGCATTTGATCGTCTCAGGTTTGATTTCAATTTCCACCGTCCACTCCTTGATAGCGAGCTTGCAGAAATCGAACTGCTGATCAACGGATGGATTGAGGATGCGATTCTTCTTCAGACCAAAGTGATGCCTCTTGCTGATGCAAAAAGAGAAGGAGCAATTGCAATGTTTGGAGAAAAATACGGGGAAGAGGTACGTGTTGTAGAGGTTCCTGGAGTATCGATGGAACTTTGTGGTGGGACTCATGTCAGTAATACTTCTGAAATTCGTGGTTTTAAAGTAATTTCAGAGCAGGGTATTGCATCTGGTGTCAGGCGAATAGAAGCTGTAGCTGGGGAAGCTTTCATCGAATATGTCAATGCTCGAGATTTATATCTGAAACAGCTATGTTCCACTCTCAAAGTTAAACCTGAAGAAGTAACTGTGAGGATAGAAAACCTTTTAGAGGAGTTACGGGTAGCAAGAAACGAAAATTCGGCTGTGCGTGCAAAAGCAGCAGTCTACAAAGCTTCAGTTATTGCAAGCAGAGCGTTTTTGGTGGGGCATTCAAAACAGTACAGGATACTAGTTGAGTGTTTGGATGATGTTGATGCGGAGTCACTTAAAAGTGCCGCAGAATATTTAATGGAAACATTAGCAGATCCAGCAGCTATTGTCCTGGGCTCATGTCCAGGTGAAGGGAAGGTTAGTCTAGTGGCTGCTTTTACTCCAGGGGTGGTTGGTCAGGGAATTCAGGCAGGTAAATTTATTGGACAGATAGCAAAATTATGTGGTGGTGGAGGAGGTGGAAGGTCCAACTTCGCTCAGGCTGGTGGGAGGAAGCCTGAAAATTTGGCTGGTGCCCTCGAGAAAGCTAAATCAGAGCTTATAGCTTATCTTTGTGAAAAAGGGAACTGA

Protein sequence

>Msa1375630

MVIHSLINNYSGLAVPLFPLLLPLPKLAAIPSATSTSTAAAAAAGGFISFKQLHLRRRRRLLPFCTSSSQDNDNNNCVSGDSIRERFLNFYASRGHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLGKLPRQVPRATTSQRCIRTNDINNVGHTSRHHTFFEMLGNFSFGDYFKKQAIQWAWDLSTIEFGLPPERLWISVYQDDHETFQLWSQQVGVPVDRIKRLGEEDNFWTSGVTGPCGPCSEIYYDFHPERGYADVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERMARILQKAPNNYETDLILPIIEKASELANISYGISDDQTKRYLKIVGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGRLLGIKGDGRGDPEGAFLPIIAQKVLELSTHIDADVKNRAPRILEELKREELRFVQTLERGEKLLEEKLVDAISSAERSGTVPCLAGEDVFILYDTYGFPMEITKEVAEERGVSIDMNGFDIEMEKQRRQSQAAHNTVKLAIGSGTNIADNVPDTEFIGYESLYCKAIVASLVVNGDPAVQVREGSNVEILLNKTPFYAESGGQIGDHGFLYISEGENQPKAVVEIIDVQKSFGNIFVHKGTVQKGVLEVGKQVEATVDVKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDSELAEIELLINGWIEDAILLQTKVMPLADAKREGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVSNTSEIRGFKVISEQGIASGVRRIEAVAGEAFIEYVNARDLYLKQLCSTLKVKPEEVTVRIENLLEELRVARNENSAVRAKAAVYKASVIASRAFLVGHSKQYRILVECLDDVDAESLKSAAEYLMETLADPAAIVLGSCPGEGKVSLVAAFTPGVVGQGIQAGKFIGQIAKLCGGGGGGRSNFAQAGGRKPENLAGALEKAKSELIAYLCEKGN*