AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0765050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0765050 MtrunA17_Chr5g0415761 98.438 128 2 0 1 128 1 128 9.44e-93 263
Msa0765050 MtrunA17_Chr5g0415771 73.228 127 33 1 1 127 1 126 8.48e-55 167
Msa0765050 MtrunA17_Chr5g0415741 68.750 128 38 1 1 128 1 126 4.79e-54 165
Msa0765050 MtrunA17_Chr7g0216481 59.615 104 42 0 24 127 30 133 1.54e-44 142
Msa0765050 MtrunA17_Chr3g0142051 47.664 107 56 0 20 126 6 112 6.58e-37 122
Msa0765050 MtrunA17_Chr1g0155721 46.296 108 58 0 21 128 7 114 2.39e-36 120
Msa0765050 MtrunA17_Chr5g0404831 42.478 113 65 0 14 126 2 114 7.23e-35 117
Msa0765050 MtrunA17_Chr8g0393201 41.509 106 62 0 21 126 228 333 4.80e-28 105
Msa0765050 MtrunA17_Chr2g0280411 38.095 105 65 0 20 124 9 113 1.60e-23 88.2
Msa0765050 MtrunA17_Chr7g0245141 40.659 91 54 0 31 121 35 125 4.10e-22 85.1
Msa0765050 MtrunA17_Chr8g0334481 35.238 105 68 0 19 123 25 129 6.19e-22 84.7
Msa0765050 MtrunA17_Chr2g0319291 32.381 105 71 0 20 124 10 114 4.61e-21 82.0
Msa0765050 MtrunA17_Chr4g0042051 37.273 110 67 2 20 128 10 118 1.07e-20 80.9
Msa0765050 MtrunA17_Chr4g0052481 36.585 82 50 1 46 125 85 166 1.77e-16 71.2
Msa0765050 MtrunA17_Chr1g0201781 31.250 96 63 2 31 125 67 160 1.87e-16 71.2
Msa0765050 MtrunA17_Chr2g0317731 37.500 88 53 2 40 125 84 171 1.81e-14 66.2
Msa0765050 MtrunA17_Chr8g0360031 35.227 88 55 2 40 125 87 174 4.95e-14 65.1
Msa0765050 MtrunA17_Chr3g0125821 32.143 84 55 2 45 126 89 172 2.39e-13 63.2
Msa0765050 MtrunA17_Chr7g0249461 35.443 79 50 1 42 119 98 176 3.89e-13 62.8
Msa0765050 MtrunA17_Chr1g0211871 32.911 79 49 2 40 117 84 159 4.35e-12 60.1
Msa0765050 MtrunA17_Chr4g0044731 34.211 76 49 1 45 119 84 159 5.96e-12 59.3
Msa0765050 MtrunA17_Chr3g0142031 51.220 41 20 0 76 116 5 45 4.72e-11 54.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0765050 AT5G39950.1 46.923 130 64 1 1 125 1 130 1.37e-42 137
Msa0765050 AT1G59730.1 42.969 128 72 1 1 127 1 128 4.29e-38 125
Msa0765050 AT1G69880.1 49.074 108 55 0 19 126 36 143 1.94e-35 119
Msa0765050 AT5G42980.1 47.222 108 57 0 21 128 6 113 1.47e-34 116
Msa0765050 AT1G19730.1 49.533 107 53 1 21 126 7 113 1.85e-34 116
Msa0765050 AT3G51030.1 44.340 106 59 0 21 126 7 112 6.31e-34 114
Msa0765050 AT1G45145.1 44.860 107 59 0 20 126 5 111 8.00e-34 114
Msa0765050 AT3G17880.2 40.000 105 63 0 22 126 265 369 3.24e-25 98.2
Msa0765050 AT3G17880.1 39.623 106 64 0 21 126 271 376 4.11e-25 98.2
Msa0765050 AT3G56420.1 39.130 92 56 0 30 121 50 141 1.40e-23 89.7
Msa0765050 AT3G56420.2 39.130 92 56 0 30 121 50 141 1.40e-23 89.7
Msa0765050 AT3G56420.3 39.130 92 56 0 30 121 50 141 1.40e-23 89.7
Msa0765050 AT1G11530.1 34.286 105 69 0 20 124 2 106 9.24e-21 81.3
Msa0765050 AT2G40790.2 39.130 92 56 0 30 121 50 141 1.22e-19 79.3
Msa0765050 AT2G40790.1 39.130 92 56 0 30 121 50 141 1.22e-19 79.3
Msa0765050 AT3G08710.2 34.951 103 65 1 21 123 26 126 1.27e-19 79.0
Msa0765050 AT3G08710.3 34.951 103 65 1 21 123 26 126 1.27e-19 79.0
Msa0765050 AT3G08710.1 34.951 103 65 1 21 123 26 126 1.27e-19 79.0
Msa0765050 AT3G15360.1 37.363 91 49 3 40 125 102 189 4.51e-16 71.2
Msa0765050 AT1G43560.1 30.159 126 79 5 9 128 39 161 9.81e-16 69.7
Msa0765050 AT2G35010.2 38.554 83 47 2 46 125 110 191 1.69e-14 67.0
Msa0765050 AT2G35010.1 38.554 83 47 2 46 125 110 191 1.69e-14 67.0
Msa0765050 AT1G76760.1 33.333 75 49 1 41 114 80 154 2.28e-14 66.2
Msa0765050 AT4G03520.1 34.940 83 52 2 45 125 101 183 8.47e-14 65.1
Msa0765050 AT1G31020.1 30.556 108 73 1 20 125 49 156 1.00e-13 64.3
Msa0765050 AT1G03680.1 35.802 81 50 2 47 125 97 177 2.42e-13 63.5
Msa0765050 AT3G02730.1 35.632 87 55 1 43 128 88 174 2.97e-13 63.5
Msa0765050 AT5G16400.1 34.091 88 57 1 42 128 97 184 4.07e-13 63.2
Msa0765050 AT1G52990.1 31.522 92 61 2 36 126 222 312 7.87e-12 61.2
Msa0765050 AT4G04950.1 29.787 94 66 0 32 125 11 104 2.59e-11 60.1
Msa0765050 AT4G32580.1 27.660 94 68 0 32 125 11 104 7.96e-11 56.6
Msa0765050 AT2G15570.1 25.843 89 65 1 32 119 74 162 8.91e-11 56.6
Msa0765050 AT2G15570.2 25.843 89 65 1 32 119 75 163 9.63e-11 56.6

Find 32 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCAGCTTGTTAGTTTCTT+TGG 0.210380 5_2:+25535741 None:intergenic
CCTTCCATTCCACTGCTAAA+TGG 0.240816 5_2:-25535783 Msa0765050:CDS
TAAGATGGTAATTGAATTTA+CGG 0.284078 5_2:-25535626 Msa0765050:intron
GATTGACGTGGATGAATTAA+TGG 0.293121 5_2:-25535521 Msa0765050:intron
GCAGCAAAGTCTTGAATGAT+TGG 0.331944 5_2:+25535571 None:intergenic
ATCATAAAGGAACATGAATA+AGG 0.362840 5_2:-25534817 Msa0765050:three_prime_UTR
AAAGTTGTTGACAAGGTTGT+AGG 0.405303 5_2:-25534926 Msa0765050:CDS
GACTGTGTTGAGCATCATAA+AGG 0.416742 5_2:-25534830 Msa0765050:three_prime_UTR
CAGCTTGTTAGTTTCTTTGG+AGG 0.429788 5_2:+25535744 None:intergenic
TTCTAATCTTGTTTGTATGA+TGG 0.429929 5_2:+25535919 None:intergenic
TCCCCAAAAGGAAAATAAGA+TGG 0.486677 5_2:-25535872 Msa0765050:exon
TTCTTCATCAGTATGAATGT+TGG 0.495900 5_2:+25534953 None:intergenic
AAGTTGTTGACAAGGTTGTA+GGG 0.506438 5_2:-25534925 Msa0765050:CDS
TTCTTGTCTAAGTCCCCAAA+AGG 0.530379 5_2:-25535884 Msa0765050:five_prime_UTR
CCTTCCATTTAGCAGTGGAA+TGG 0.530623 5_2:+25535779 None:intergenic
CTCCAAAGAAACTAACAAGC+TGG 0.546462 5_2:-25535743 Msa0765050:intron
GTGTGGACCTTGCAAATACA+TGG 0.552168 5_2:-25535596 Msa0765050:CDS
CCATTTAGCAGTGGAATGGA+AGG 0.552428 5_2:+25535783 None:intergenic
CCATTCCACTGCTAAATGGA+AGG 0.553763 5_2:-25535779 Msa0765050:CDS
CCCCAAAAGGAAAATAAGAT+GGG 0.564952 5_2:-25535871 Msa0765050:exon
ACATTCATACTGATGAAGAA+AGG 0.574346 5_2:-25534950 Msa0765050:CDS
ATTGGATCCATGTATTTGCA+AGG 0.586486 5_2:+25535589 None:intergenic
GGGAGGCAATTTATCCAACA+TGG 0.596510 5_2:-25535851 Msa0765050:CDS
GAATTTACGGCTGCATGGTG+TGG 0.600755 5_2:-25535613 Msa0765050:CDS
GAAAGGAAAAGTTGTTGACA+AGG 0.605147 5_2:-25534933 Msa0765050:CDS
AATTTATCCAACATGGAGCA+TGG 0.613422 5_2:-25535844 Msa0765050:CDS
ATAAGCCTTCCATTTAGCAG+TGG 0.613671 5_2:+25535774 None:intergenic
TGTATGACCATGCTCCATGT+TGG 0.627275 5_2:+25535837 None:intergenic
AGTTGTTGACAAGGTTGTAG+GGG 0.631631 5_2:-25534924 Msa0765050:CDS
CAAAAGGAAAATAAGATGGG+AGG 0.648531 5_2:-25535868 Msa0765050:exon
AGATTTCATCAAGATTGACG+TGG 0.662014 5_2:-25535533 Msa0765050:CDS
TAATTGAATTTACGGCTGCA+TGG 0.665704 5_2:-25535618 Msa0765050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTTTATATAATGTATAGA+TGG + chr5_2:25535203-25535222 None:intergenic 15.0%
!!! TATACTCAAATGATTATTTT+AGG + chr5_2:25535377-25535396 None:intergenic 15.0%
!!! AAGATGAACTTTTTTTTTAA+AGG - chr5_2:25535516-25535535 Msa0765050:intron 15.0%
!!! AGATGAACTTTTTTTTTAAA+GGG - chr5_2:25535517-25535536 Msa0765050:intron 15.0%
!!! ATTATTTTTCAATTGTAAAC+AGG - chr5_2:25535618-25535637 Msa0765050:CDS 15.0%
!!! TTATTTTTCAATTGTAAACA+GGG - chr5_2:25535619-25535638 Msa0765050:CDS 15.0%
!! ATCTTTATATAATGTATAGA+TGG + chr5_2:25535203-25535222 None:intergenic 15.0%
!!! TATACTCAAATGATTATTTT+AGG + chr5_2:25535377-25535396 None:intergenic 15.0%
!!! AAGATGAACTTTTTTTTTAA+AGG - chr5_2:25535516-25535535 Msa0765050:intron 15.0%
!!! AGATGAACTTTTTTTTTAAA+GGG - chr5_2:25535517-25535536 Msa0765050:intron 15.0%
!!! ATTATTTTTCAATTGTAAAC+AGG - chr5_2:25535618-25535637 Msa0765050:CDS 15.0%
!!! TTATTTTTCAATTGTAAACA+GGG - chr5_2:25535619-25535638 Msa0765050:CDS 15.0%
!!! TTTTGTTTTTTTAACTCTCA+TGG - chr5_2:25534957-25534976 Msa0765050:CDS 20.0%
!!! TTTGTTTTTTTAACTCTCAT+GGG - chr5_2:25534958-25534977 Msa0765050:CDS 20.0%
!! TAAGATGGTAATTGAATTTA+CGG - chr5_2:25535000-25535019 Msa0765050:intron 20.0%
!! ATGTTATATCTCCTAATATA+AGG - chr5_2:25535169-25535188 Msa0765050:intron 20.0%
!! TGTTATATCTCCTAATATAA+GGG - chr5_2:25535170-25535189 Msa0765050:intron 20.0%
!! ATAATTAATGTATCAAACTC+CGG - chr5_2:25535394-25535413 Msa0765050:intron 20.0%
!!! ATACTGTTAAGTTGAATTAA+GGG + chr5_2:25535429-25535448 None:intergenic 20.0%
!!! AATACTGTTAAGTTGAATTA+AGG + chr5_2:25535430-25535449 None:intergenic 20.0%
!!! GATGAACTTTTTTTTTAAAG+GGG - chr5_2:25535518-25535537 Msa0765050:intron 20.0%
!!! TTTTGTTTTTTTAACTCTCA+TGG - chr5_2:25534957-25534976 Msa0765050:CDS 20.0%
!!! TTTGTTTTTTTAACTCTCAT+GGG - chr5_2:25534958-25534977 Msa0765050:CDS 20.0%
!! TAAGATGGTAATTGAATTTA+CGG - chr5_2:25535000-25535019 Msa0765050:intron 20.0%
!! ATGTTATATCTCCTAATATA+AGG - chr5_2:25535169-25535188 Msa0765050:intron 20.0%
!! TGTTATATCTCCTAATATAA+GGG - chr5_2:25535170-25535189 Msa0765050:intron 20.0%
!! ATAATTAATGTATCAAACTC+CGG - chr5_2:25535394-25535413 Msa0765050:intron 20.0%
!!! ATACTGTTAAGTTGAATTAA+GGG + chr5_2:25535429-25535448 None:intergenic 20.0%
!!! AATACTGTTAAGTTGAATTA+AGG + chr5_2:25535430-25535449 None:intergenic 20.0%
!!! GATGAACTTTTTTTTTAAAG+GGG - chr5_2:25535518-25535537 Msa0765050:intron 20.0%
!! TTCTAATCTTGTTTGTATGA+TGG + chr5_2:25534710-25534729 None:intergenic 25.0%
!!! TGTATTTTTTTGGCTTAAGA+TGG - chr5_2:25534985-25535004 Msa0765050:CDS 25.0%
! TTACTTATAAGCTCTTACTA+TGG - chr5_2:25535293-25535312 Msa0765050:intron 25.0%
! ATCATAAAGGAACATGAATA+AGG - chr5_2:25535809-25535828 Msa0765050:CDS 25.0%
!! TTCTAATCTTGTTTGTATGA+TGG + chr5_2:25534710-25534729 None:intergenic 25.0%
!!! TGTATTTTTTTGGCTTAAGA+TGG - chr5_2:25534985-25535004 Msa0765050:CDS 25.0%
! TTACTTATAAGCTCTTACTA+TGG - chr5_2:25535293-25535312 Msa0765050:intron 25.0%
! ATCATAAAGGAACATGAATA+AGG - chr5_2:25535809-25535828 Msa0765050:CDS 25.0%
!!! TCCCATCTTATTTTCCTTTT+GGG + chr5_2:25534759-25534778 None:intergenic 30.0%
GAATTAAGGGATATAAAAGC+CGG + chr5_2:25535416-25535435 None:intergenic 30.0%
GTTATGACTAGACACAAAAT+TGG - chr5_2:25535542-25535561 Msa0765050:CDS 30.0%
!! ATTTGAAACGAGACTTTTTG+AGG - chr5_2:25535580-25535599 Msa0765050:CDS 30.0%
TTCTTCATCAGTATGAATGT+TGG + chr5_2:25535676-25535695 None:intergenic 30.0%
ACATTCATACTGATGAAGAA+AGG - chr5_2:25535676-25535695 Msa0765050:intron 30.0%
TTTGCACGTCAAAAACAATT+TGG + chr5_2:25535869-25535888 None:intergenic 30.0%
!!! TCCCATCTTATTTTCCTTTT+GGG + chr5_2:25534759-25534778 None:intergenic 30.0%
GAATTAAGGGATATAAAAGC+CGG + chr5_2:25535416-25535435 None:intergenic 30.0%
GTTATGACTAGACACAAAAT+TGG - chr5_2:25535542-25535561 Msa0765050:CDS 30.0%
!! ATTTGAAACGAGACTTTTTG+AGG - chr5_2:25535580-25535599 Msa0765050:CDS 30.0%
TTCTTCATCAGTATGAATGT+TGG + chr5_2:25535676-25535695 None:intergenic 30.0%
ACATTCATACTGATGAAGAA+AGG - chr5_2:25535676-25535695 Msa0765050:intron 30.0%
TTTGCACGTCAAAAACAATT+TGG + chr5_2:25535869-25535888 None:intergenic 30.0%
TCCCCAAAAGGAAAATAAGA+TGG - chr5_2:25534754-25534773 Msa0765050:three_prime_UTR 35.0%
!!! CCCATCTTATTTTCCTTTTG+GGG + chr5_2:25534758-25534777 None:intergenic 35.0%
CCCCAAAAGGAAAATAAGAT+GGG - chr5_2:25534755-25534774 Msa0765050:three_prime_UTR 35.0%
!!! CTCCCATCTTATTTTCCTTT+TGG + chr5_2:25534760-25534779 None:intergenic 35.0%
CAAAAGGAAAATAAGATGGG+AGG - chr5_2:25534758-25534777 Msa0765050:three_prime_UTR 35.0%
AATTTATCCAACATGGAGCA+TGG - chr5_2:25534782-25534801 Msa0765050:three_prime_UTR 35.0%
!!! CATGGGATCGTGTATTTTTT+TGG - chr5_2:25534975-25534994 Msa0765050:CDS 35.0%
TAATTGAATTTACGGCTGCA+TGG - chr5_2:25535008-25535027 Msa0765050:intron 35.0%
ATTGGATCCATGTATTTGCA+AGG + chr5_2:25535040-25535059 None:intergenic 35.0%
AGATTTCATCAAGATTGACG+TGG - chr5_2:25535093-25535112 Msa0765050:intron 35.0%
GATTGACGTGGATGAATTAA+TGG - chr5_2:25535105-25535124 Msa0765050:intron 35.0%
GAAAGGAAAAGTTGTTGACA+AGG - chr5_2:25535693-25535712 Msa0765050:intron 35.0%
AAAGTTGTTGACAAGGTTGT+AGG - chr5_2:25535700-25535719 Msa0765050:intron 35.0%
AAGTTGTTGACAAGGTTGTA+GGG - chr5_2:25535701-25535720 Msa0765050:intron 35.0%
TCCCCAAAAGGAAAATAAGA+TGG - chr5_2:25534754-25534773 Msa0765050:three_prime_UTR 35.0%
!!! CCCATCTTATTTTCCTTTTG+GGG + chr5_2:25534758-25534777 None:intergenic 35.0%
CCCCAAAAGGAAAATAAGAT+GGG - chr5_2:25534755-25534774 Msa0765050:three_prime_UTR 35.0%
!!! CTCCCATCTTATTTTCCTTT+TGG + chr5_2:25534760-25534779 None:intergenic 35.0%
CAAAAGGAAAATAAGATGGG+AGG - chr5_2:25534758-25534777 Msa0765050:three_prime_UTR 35.0%
AATTTATCCAACATGGAGCA+TGG - chr5_2:25534782-25534801 Msa0765050:three_prime_UTR 35.0%
!!! CATGGGATCGTGTATTTTTT+TGG - chr5_2:25534975-25534994 Msa0765050:CDS 35.0%
TAATTGAATTTACGGCTGCA+TGG - chr5_2:25535008-25535027 Msa0765050:intron 35.0%
ATTGGATCCATGTATTTGCA+AGG + chr5_2:25535040-25535059 None:intergenic 35.0%
AGATTTCATCAAGATTGACG+TGG - chr5_2:25535093-25535112 Msa0765050:intron 35.0%
GATTGACGTGGATGAATTAA+TGG - chr5_2:25535105-25535124 Msa0765050:intron 35.0%
GAAAGGAAAAGTTGTTGACA+AGG - chr5_2:25535693-25535712 Msa0765050:intron 35.0%
AAAGTTGTTGACAAGGTTGT+AGG - chr5_2:25535700-25535719 Msa0765050:intron 35.0%
AAGTTGTTGACAAGGTTGTA+GGG - chr5_2:25535701-25535720 Msa0765050:intron 35.0%
TTCTTGTCTAAGTCCCCAAA+AGG - chr5_2:25534742-25534761 Msa0765050:three_prime_UTR 40.0%
ATAAGCCTTCCATTTAGCAG+TGG + chr5_2:25534855-25534874 None:intergenic 40.0%
!! CAGCTTGTTAGTTTCTTTGG+AGG + chr5_2:25534885-25534904 None:intergenic 40.0%
CTCCAAAGAAACTAACAAGC+TGG - chr5_2:25534883-25534902 Msa0765050:CDS 40.0%
!! CACCAGCTTGTTAGTTTCTT+TGG + chr5_2:25534888-25534907 None:intergenic 40.0%
GCAGCAAAGTCTTGAATGAT+TGG + chr5_2:25535058-25535077 None:intergenic 40.0%
! TGGTCTTTTTCCATACGAAC+AGG - chr5_2:25535313-25535332 Msa0765050:intron 40.0%
AGTTGTTGACAAGGTTGTAG+GGG - chr5_2:25535702-25535721 Msa0765050:intron 40.0%
GACTGTGTTGAGCATCATAA+AGG - chr5_2:25535796-25535815 Msa0765050:CDS 40.0%
TTCTTGTCTAAGTCCCCAAA+AGG - chr5_2:25534742-25534761 Msa0765050:three_prime_UTR 40.0%
ATAAGCCTTCCATTTAGCAG+TGG + chr5_2:25534855-25534874 None:intergenic 40.0%
!! CAGCTTGTTAGTTTCTTTGG+AGG + chr5_2:25534885-25534904 None:intergenic 40.0%
CTCCAAAGAAACTAACAAGC+TGG - chr5_2:25534883-25534902 Msa0765050:CDS 40.0%
!! CACCAGCTTGTTAGTTTCTT+TGG + chr5_2:25534888-25534907 None:intergenic 40.0%
GCAGCAAAGTCTTGAATGAT+TGG + chr5_2:25535058-25535077 None:intergenic 40.0%
! TGGTCTTTTTCCATACGAAC+AGG - chr5_2:25535313-25535332 Msa0765050:intron 40.0%
AGTTGTTGACAAGGTTGTAG+GGG - chr5_2:25535702-25535721 Msa0765050:intron 40.0%
GACTGTGTTGAGCATCATAA+AGG - chr5_2:25535796-25535815 Msa0765050:CDS 40.0%
GGGAGGCAATTTATCCAACA+TGG - chr5_2:25534775-25534794 Msa0765050:three_prime_UTR 45.0%
TGTATGACCATGCTCCATGT+TGG + chr5_2:25534792-25534811 None:intergenic 45.0%
CCATTTAGCAGTGGAATGGA+AGG + chr5_2:25534846-25534865 None:intergenic 45.0%
CCTTCCATTCCACTGCTAAA+TGG - chr5_2:25534843-25534862 Msa0765050:three_prime_UTR 45.0%
CCTTCCATTTAGCAGTGGAA+TGG + chr5_2:25534850-25534869 None:intergenic 45.0%
CCATTCCACTGCTAAATGGA+AGG - chr5_2:25534847-25534866 Msa0765050:three_prime_UTR 45.0%
GTGTGGACCTTGCAAATACA+TGG - chr5_2:25535030-25535049 Msa0765050:intron 45.0%
TGGTGTGCTGCCCTTATATT+AGG + chr5_2:25535183-25535202 None:intergenic 45.0%
CCTTAGTCATCCTGTTCGTA+TGG + chr5_2:25535326-25535345 None:intergenic 45.0%
CCATACGAACAGGATGACTA+AGG - chr5_2:25535323-25535342 Msa0765050:intron 45.0%
CAAGGTTGTAGGGGCAAAAA+AGG - chr5_2:25535711-25535730 Msa0765050:intron 45.0%
GGGAGGCAATTTATCCAACA+TGG - chr5_2:25534775-25534794 Msa0765050:three_prime_UTR 45.0%
TGTATGACCATGCTCCATGT+TGG + chr5_2:25534792-25534811 None:intergenic 45.0%
CCATTTAGCAGTGGAATGGA+AGG + chr5_2:25534846-25534865 None:intergenic 45.0%
CCTTCCATTCCACTGCTAAA+TGG - chr5_2:25534843-25534862 Msa0765050:three_prime_UTR 45.0%
CCTTCCATTTAGCAGTGGAA+TGG + chr5_2:25534850-25534869 None:intergenic 45.0%
CCATTCCACTGCTAAATGGA+AGG - chr5_2:25534847-25534866 Msa0765050:three_prime_UTR 45.0%
GTGTGGACCTTGCAAATACA+TGG - chr5_2:25535030-25535049 Msa0765050:intron 45.0%
TGGTGTGCTGCCCTTATATT+AGG + chr5_2:25535183-25535202 None:intergenic 45.0%
CCTTAGTCATCCTGTTCGTA+TGG + chr5_2:25535326-25535345 None:intergenic 45.0%
CCATACGAACAGGATGACTA+AGG - chr5_2:25535323-25535342 Msa0765050:intron 45.0%
CAAGGTTGTAGGGGCAAAAA+AGG - chr5_2:25535711-25535730 Msa0765050:intron 45.0%
GAATTTACGGCTGCATGGTG+TGG - chr5_2:25535013-25535032 Msa0765050:intron 50.0%
GAATTTACGGCTGCATGGTG+TGG - chr5_2:25535013-25535032 Msa0765050:intron 50.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 25534705 25535943 25534705 ID=Msa0765050;Name=Msa0765050
chr5_2 mRNA 25534705 25535943 25534705 ID=Msa0765050-mRNA-1;Parent=Msa0765050;Name=Msa0765050-mRNA-1;_AED=0.10;_eAED=0.10;_QI=68|1|1|1|1|1|3|172|128
chr5_2 exon 25534705 25535008 25534705 ID=Msa0765050-mRNA-1:exon:10285;Parent=Msa0765050-mRNA-1
chr5_2 exon 25535522 25535644 25535522 ID=Msa0765050-mRNA-1:exon:10284;Parent=Msa0765050-mRNA-1
chr5_2 exon 25535744 25535943 25535744 ID=Msa0765050-mRNA-1:exon:10283;Parent=Msa0765050-mRNA-1
chr5_2 five_prime_UTR 25535876 25535943 25535876 ID=Msa0765050-mRNA-1:five_prime_utr;Parent=Msa0765050-mRNA-1
chr5_2 CDS 25535744 25535875 25535744 ID=Msa0765050-mRNA-1:cds;Parent=Msa0765050-mRNA-1
chr5_2 CDS 25535522 25535644 25535522 ID=Msa0765050-mRNA-1:cds;Parent=Msa0765050-mRNA-1
chr5_2 CDS 25534877 25535008 25534877 ID=Msa0765050-mRNA-1:cds;Parent=Msa0765050-mRNA-1
chr5_2 three_prime_UTR 25534705 25534876 25534705 ID=Msa0765050-mRNA-1:three_prime_utr;Parent=Msa0765050-mRNA-1
Gene Sequence

>Msa0765050

ATGGGAGGCAATTTATCCAACATGGAGCATGGTCATACATCTGCAAAGTCATTATCATCTCACATTCTTACCTTCCATTCCACTGCTAAATGGAAGGCTTATTTTGATGCCTCCAAAGAAACTAACAAGCTGATGGTAATTGAATTTACGGCTGCATGGTGTGGACCTTGCAAATACATGGATCCAATCATTCAAGACTTTGCTGCAAAATACATAAAAGTAGATTTCATCAAGATTGACGTGGATGAATTAATGGGTGTCTCTCAAGAGTTTCAAGTGCAAGCAATGCCAACATTCATACTGATGAAGAAAGGAAAAGTTGTTGACAAGGTTGTAGGGGCAAAAAAGGAAGAGCTTGAAAAGTTGATTGAGAAGCATCAAAACTAA
Protein sequence

>Msa0765050

MGGNLSNMEHGHTSAKSLSSHILTFHSTAKWKAYFDASKETNKLMVIEFTAAWCGPCKYMDPIIQDFAAKYIKVDFIKIDVDELMGVSQEFQVQAMPTFILMKKGKVVDKVVGAKKEELEKLIEKHQN*