Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0869930 | XP_024641091.1 | 88.050 | 159 | 15 | 1 | 1 | 155 | 1 | 159 | 1.46e-96 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0869930 | sp|P64956|Y2253_MYCBO | 40.800 | 125 | 73 | 1 | 16 | 139 | 3 | 127 | 8.53e-23 | 95.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0869930 | A0A396HG70 | 68.571 | 140 | 44 | 0 | 14 | 153 | 7 | 146 | 1.61e-58 | 188 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046870 | Msa0869930 | 0.822865 | 1.884655e-53 | -8.615850e-47 |
| Msa0734250 | Msa0869930 | 0.809035 | 2.308342e-50 | -8.615850e-47 |
| Msa0765050 | Msa0869930 | 0.806201 | 9.230263e-50 | -8.615850e-47 |
| Msa0813160 | Msa0869930 | 0.816964 | 4.214950e-52 | -8.615850e-47 |
| Msa0187540 | Msa0869930 | 0.834668 | 2.623495e-56 | -8.615850e-47 |
| Msa0481630 | Msa0869930 | 0.837197 | 5.992868e-57 | -8.615850e-47 |
| Msa0869930 | Msa1106590 | 0.840426 | 8.759089e-58 | -8.615850e-47 |
| Msa0869930 | Msa1129330 | 0.835782 | 1.372891e-56 | -8.615850e-47 |
| Msa0869930 | Msa1368390 | 0.805527 | 1.278462e-49 | -8.615850e-47 |
| Msa0869930 | Msa1384700 | 0.806529 | 7.868899e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0869930 | MtrunA17_Chr6g0451421 | 68.571 | 140 | 44 | 0 | 14 | 153 | 7 | 146 | 3.10e-62 | 188 |
| Msa0869930 | MtrunA17_Chr6g0451411 | 63.768 | 138 | 50 | 0 | 15 | 152 | 176 | 313 | 1.30e-57 | 182 |
| Msa0869930 | MtrunA17_Chr6g0451451 | 90.805 | 87 | 8 | 0 | 69 | 155 | 1 | 87 | 4.70e-54 | 165 |
| Msa0869930 | MtrunA17_Chr2g0329701 | 57.143 | 147 | 63 | 0 | 6 | 152 | 225 | 371 | 2.24e-53 | 172 |
| Msa0869930 | MtrunA17_Chr7g0264421 | 55.405 | 148 | 66 | 0 | 5 | 152 | 194 | 341 | 5.20e-53 | 171 |
| Msa0869930 | MtrunA17_Chr2g0325301 | 55.474 | 137 | 61 | 0 | 14 | 150 | 9 | 145 | 4.77e-51 | 160 |
| Msa0869930 | MtrunA17_Chr6g0451441 | 52.027 | 148 | 63 | 1 | 15 | 154 | 320 | 467 | 1.51e-41 | 144 |
| Msa0869930 | MtrunA17_Chr1g0158081 | 37.815 | 119 | 72 | 1 | 20 | 138 | 1211 | 1327 | 2.22e-13 | 66.6 |
| Msa0869930 | MtrunA17_Chr3g0110591 | 36.975 | 119 | 73 | 1 | 20 | 138 | 27 | 143 | 4.16e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0869930 | AT3G01410.2 | 51.471 | 136 | 66 | 0 | 15 | 150 | 154 | 289 | 7.74e-45 | 149 |
| Msa0869930 | AT3G01410.1 | 51.471 | 136 | 66 | 0 | 15 | 150 | 154 | 289 | 7.74e-45 | 149 |
| Msa0869930 | AT5G51080.3 | 48.905 | 137 | 70 | 0 | 14 | 150 | 121 | 257 | 6.05e-41 | 138 |
| Msa0869930 | AT5G51080.1 | 49.265 | 136 | 69 | 0 | 15 | 150 | 185 | 320 | 3.98e-40 | 137 |
| Msa0869930 | AT5G51080.2 | 49.265 | 136 | 69 | 0 | 15 | 150 | 185 | 320 | 3.98e-40 | 137 |
| Msa0869930 | AT1G24090.1 | 50.714 | 140 | 69 | 0 | 11 | 150 | 212 | 351 | 4.24e-39 | 135 |
Find 38 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATCTACAATGCAAATTTA+TGG | 0.208454 | 6_1:+4213855 | Msa0869930:CDS |
| GCTATACTGCGATCGGAAAA+TGG | 0.245683 | 6_1:+4213475 | Msa0869930:CDS |
| ATATAATGAAGTTATTTATA+CGG | 0.306987 | 6_1:+4212527 | Msa0869930:CDS |
| TCTTGTATCATTGAATTTGA+TGG | 0.338595 | 6_1:+4213415 | Msa0869930:CDS |
| CTCTCAGCTGGTTGTCAACC+AGG | 0.361259 | 6_1:+4213716 | Msa0869930:CDS |
| ATGAAACAAGCCATCCAAAA+AGG | 0.370537 | 6_1:+4213666 | Msa0869930:CDS |
| TTGGATTTGCAACAGTTTAC+GGG | 0.373243 | 6_1:+4213824 | Msa0869930:intron |
| GGCGCATCCCGTGGAAATCC+TGG | 0.383095 | 6_1:+4213436 | Msa0869930:CDS |
| GAGCTTATGTAACGAGGCTT+TGG | 0.384951 | 6_1:+4213877 | Msa0869930:CDS |
| ACTCAGCTACATTATTTGTT+TGG | 0.387567 | 6_1:-4213623 | None:intergenic |
| TATCGATTCCGTGAAGGATT+AGG | 0.418679 | 6_1:+4213597 | Msa0869930:CDS |
| TAAATACCCTGCGAATGTAT+TGG | 0.430599 | 6_1:-4213931 | None:intergenic |
| CTATACTGCGATCGGAAAAT+GGG | 0.453191 | 6_1:+4213476 | Msa0869930:CDS |
| CGTGGAAATCCTGGACCAGC+TGG | 0.470461 | 6_1:+4213445 | Msa0869930:CDS |
| GCTCCTGCTCCAGCTGGTCC+AGG | 0.477291 | 6_1:-4213454 | None:intergenic |
| TTTGGTAGCCTAATCCTTCA+CGG | 0.484089 | 6_1:-4213605 | None:intergenic |
| AGCTGATGCTCAAGCAAACC+AGG | 0.491519 | 6_1:+4214119 | Msa0869930:CDS |
| ATCATCACATCGCTATCAAA+GGG | 0.492142 | 6_1:+4213691 | Msa0869930:CDS |
| TATCAAAGGGGACTCTCAGC+TGG | 0.494450 | 6_1:+4213704 | Msa0869930:CDS |
| GCAAACCAGGCCGTCTATCT+CGG | 0.501891 | 6_1:+4214132 | Msa0869930:CDS |
| GCACCATCCAATACATTCGC+AGG | 0.512350 | 6_1:+4213924 | Msa0869930:CDS |
| AATCCTGGACCAGCTGGAGC+AGG | 0.519905 | 6_1:+4213451 | Msa0869930:CDS |
| AGTATAGCTCCTGCTCCAGC+TGG | 0.520003 | 6_1:-4213460 | None:intergenic |
| GTCCAGATGCAGCATTATGT+TGG | 0.532604 | 6_1:+4212504 | Msa0869930:intron |
| TATCATCACATCGCTATCAA+AGG | 0.541952 | 6_1:+4213690 | Msa0869930:CDS |
| TAACGAGGCTTTGGAGCTGA+AGG | 0.547906 | 6_1:+4213886 | Msa0869930:CDS |
| AGCAGGAGCTATACTGCGAT+CGG | 0.556394 | 6_1:+4213468 | Msa0869930:CDS |
| CAGCTGGTCCAGGATTTCCA+CGG | 0.572500 | 6_1:-4213444 | None:intergenic |
| GAATTTGATGGCGCATCCCG+TGG | 0.573355 | 6_1:+4213427 | Msa0869930:CDS |
| AGCTGGTCCAGGATTTCCAC+GGG | 0.575672 | 6_1:-4213443 | None:intergenic |
| TAGCTCTATCGATTCCGTGA+AGG | 0.602182 | 6_1:+4213591 | Msa0869930:intron |
| GGTCTAACCTCCGAGATAGA+CGG | 0.619003 | 6_1:-4214142 | None:intergenic |
| AACGAGGCTTTGGAGCTGAA+GGG | 0.620144 | 6_1:+4213887 | Msa0869930:CDS |
| CACCATCCAATACATTCGCA+GGG | 0.625145 | 6_1:+4213925 | Msa0869930:CDS |
| GCGATCGGAAAATGGGAATG+TGG | 0.647786 | 6_1:+4213483 | Msa0869930:CDS |
| TTTATGGAGCTTATGTAACG+AGG | 0.654358 | 6_1:+4213871 | Msa0869930:CDS |
| TACCCTGCGAATGTATTGGA+TGG | 0.689775 | 6_1:-4213927 | None:intergenic |
| TCATCACATCGCTATCAAAG+GGG | 0.699297 | 6_1:+4213692 | Msa0869930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATGAAGTTATTTATA+CGG | + | chr6_1:4212527-4212546 | Msa0869930:CDS | 10.0% |
| !! | TCTACAATTTATAACATATA+CGG | - | chr6_1:4212876-4212895 | None:intergenic | 15.0% |
| !! | AAACTTTATAATATGATTTC+TGG | - | chr6_1:4213220-4213239 | None:intergenic | 15.0% |
| !! | AATATACTTACATATGTTAT+TGG | + | chr6_1:4213805-4213824 | Msa0869930:intron | 15.0% |
| !! | TACAATGAGATAAATATATA+AGG | - | chr6_1:4214050-4214069 | None:intergenic | 15.0% |
| !! | TATTACAATTCTCATTTATT+AGG | - | chr6_1:4214295-4214314 | None:intergenic | 15.0% |
| !!! | AGACTACTAATTTATTTCTT+TGG | + | chr6_1:4212185-4212204 | Msa0869930:intron | 20.0% |
| !! | ATAATGTATAATATATGCAG+GGG | - | chr6_1:4212344-4212363 | None:intergenic | 20.0% |
| !! | GATAATGTATAATATATGCA+GGG | - | chr6_1:4212345-4212364 | None:intergenic | 20.0% |
| !! | AGATAATGTATAATATATGC+AGG | - | chr6_1:4212346-4212365 | None:intergenic | 20.0% |
| !! | TAACATAAAAATTTCTTGCT+CGG | + | chr6_1:4212616-4212635 | Msa0869930:intron | 20.0% |
| !!! | AGATATTACTCATTTTATAC+TGG | - | chr6_1:4212734-4212753 | None:intergenic | 20.0% |
| !!! | AATCTATCTTTGATTTATTC+AGG | - | chr6_1:4212763-4212782 | None:intergenic | 20.0% |
| !! | TTCAAATAAATCCATACTAT+AGG | - | chr6_1:4213068-4213087 | None:intergenic | 20.0% |
| !!! | ATACTTAGATGTTAACTTTT+TGG | + | chr6_1:4213281-4213300 | Msa0869930:intron | 20.0% |
| !!! | TTTTCCTTTGTAATTGTTTA+AGG | + | chr6_1:4214083-4214102 | Msa0869930:intron | 20.0% |
| !! | AGAAAACAATTGTAACTTAT+AGG | - | chr6_1:4214187-4214206 | None:intergenic | 20.0% |
| !! | ATCCATTAAATTCATATAAG+AGG | - | chr6_1:4214420-4214439 | None:intergenic | 20.0% |
| !!! | GATTTTAAATTTTTTGTAGC+TGG | + | chr6_1:4214437-4214456 | Msa0869930:intron | 20.0% |
| !! | TTCATTTCTTTGAAAATGCA+TGG | + | chr6_1:4212126-4212145 | Msa0869930:intron | 25.0% |
| !! | CTACTAATTTATTTCTTTGG+AGG | + | chr6_1:4212188-4212207 | Msa0869930:intron | 25.0% |
| ! | GATCAGATAATTCAATCAAA+CGG | - | chr6_1:4212470-4212489 | None:intergenic | 25.0% |
| ! | TGTGAAAATAGTCATACAAA+GGG | - | chr6_1:4212836-4212855 | None:intergenic | 25.0% |
| !!! | ACTATTTTCACACCATTTTT+AGG | + | chr6_1:4212844-4212863 | Msa0869930:intron | 25.0% |
| ! | ATCTCTTTAAGTCAAATCAA+TGG | + | chr6_1:4212925-4212944 | Msa0869930:intron | 25.0% |
| ! | AAAGATCTTAACCTATAGTA+TGG | + | chr6_1:4213054-4213073 | Msa0869930:intron | 25.0% |
| ! | TCTTGTATCATTGAATTTGA+TGG | + | chr6_1:4213415-4213434 | Msa0869930:CDS | 25.0% |
| ! | ACATCTACAATGCAAATTTA+TGG | + | chr6_1:4213855-4213874 | Msa0869930:CDS | 25.0% |
| !! | TAAGGAGTTGTATTCTAAAA+TGG | - | chr6_1:4214032-4214051 | None:intergenic | 25.0% |
| ! | AGTTCCTTAAACAATTACAA+AGG | - | chr6_1:4214090-4214109 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTCAAAGAAGATT+TGG | - | chr6_1:4214244-4214263 | None:intergenic | 25.0% |
| !! | TTTAACAAAAAGACGCTTTT+TGG | - | chr6_1:4214261-4214280 | None:intergenic | 25.0% |
| ! | AAAACCAATTAAAGCAACTT+TGG | - | chr6_1:4214327-4214346 | None:intergenic | 25.0% |
| ! | TGCCTCTTATATGAATTTAA+TGG | + | chr6_1:4214415-4214434 | Msa0869930:intron | 25.0% |
| !!! | TATTTCTTTGGAGGCATTTT+TGG | + | chr6_1:4212197-4212216 | Msa0869930:intron | 30.0% |
| !!! | ATTTCTTTGGAGGCATTTTT+GGG | + | chr6_1:4212198-4212217 | Msa0869930:intron | 30.0% |
| ! | TGTCAAATTTTCTAACCGTT+AGG | - | chr6_1:4212293-4212312 | None:intergenic | 30.0% |
| GGTTAGAAAATTTGACAGAT+GGG | + | chr6_1:4212296-4212315 | Msa0869930:intron | 30.0% | |
| GTTAGAAAATTTGACAGATG+GGG | + | chr6_1:4212297-4212316 | Msa0869930:intron | 30.0% | |
| ATACGGTATTTCAAATCAGA+TGG | + | chr6_1:4212544-4212563 | Msa0869930:intron | 30.0% | |
| TTATTAACCTTTGCTTTGCA+TGG | + | chr6_1:4212676-4212695 | Msa0869930:intron | 30.0% | |
| AGAGAATTGTTCAACTTAGA+GGG | - | chr6_1:4212709-4212728 | None:intergenic | 30.0% | |
| AAGAGAATTGTTCAACTTAG+AGG | - | chr6_1:4212710-4212729 | None:intergenic | 30.0% | |
| GTGTGAAAATAGTCATACAA+AGG | - | chr6_1:4212837-4212856 | None:intergenic | 30.0% | |
| ! | AAAATCAAGTCACCTGTTTT+TGG | - | chr6_1:4213103-4213122 | None:intergenic | 30.0% |
| ! | AAAAACAGGTGACTTGATTT+TGG | + | chr6_1:4213102-4213121 | Msa0869930:intron | 30.0% |
| GATGAATTGTTGAGTAAAGT+TGG | - | chr6_1:4213511-4213530 | None:intergenic | 30.0% | |
| ACTCAGCTACATTATTTGTT+TGG | - | chr6_1:4213626-4213645 | None:intergenic | 30.0% | |
| AGCATATAATAGAACAAACC+TGG | - | chr6_1:4213737-4213756 | None:intergenic | 30.0% | |
| ATTGGATTTGCAACAGTTTA+CGG | + | chr6_1:4213823-4213842 | Msa0869930:intron | 30.0% | |
| ! | TTTTGTGTCAAGTAGCCTAA+CGG | + | chr6_1:4212275-4212294 | Msa0869930:intron | 35.0% |
| CGGTTAGAAAATTTGACAGA+TGG | + | chr6_1:4212295-4212314 | Msa0869930:intron | 35.0% | |
| TATAATATATGCAGGGGTTG+GGG | - | chr6_1:4212338-4212357 | None:intergenic | 35.0% | |
| GTATAATATATGCAGGGGTT+GGG | - | chr6_1:4212339-4212358 | None:intergenic | 35.0% | |
| TGTATAATATATGCAGGGGT+TGG | - | chr6_1:4212340-4212359 | None:intergenic | 35.0% | |
| TACCAAGTGAGCTAAAATCA+CGG | + | chr6_1:4212368-4212387 | Msa0869930:intron | 35.0% | |
| GAGAATTGTTCAACTTAGAG+GGG | - | chr6_1:4212708-4212727 | None:intergenic | 35.0% | |
| AGAAACTCAACACCAAAAAC+AGG | + | chr6_1:4213088-4213107 | Msa0869930:intron | 35.0% | |
| TTATTCATGAGCCTCATACA+GGG | - | chr6_1:4213136-4213155 | None:intergenic | 35.0% | |
| ATGAAACAAGCCATCCAAAA+AGG | + | chr6_1:4213666-4213685 | Msa0869930:CDS | 35.0% | |
| ! | GTGATGATATCCTTTTTGGA+TGG | - | chr6_1:4213679-4213698 | None:intergenic | 35.0% |
| ! | CGATGTGATGATATCCTTTT+TGG | - | chr6_1:4213683-4213702 | None:intergenic | 35.0% |
| TATCATCACATCGCTATCAA+AGG | + | chr6_1:4213690-4213709 | Msa0869930:CDS | 35.0% | |
| ATCATCACATCGCTATCAAA+GGG | + | chr6_1:4213691-4213710 | Msa0869930:CDS | 35.0% | |
| TGTTCTATTATATGCTGCTG+AGG | + | chr6_1:4213741-4213760 | Msa0869930:intron | 35.0% | |
| TTGGATTTGCAACAGTTTAC+GGG | + | chr6_1:4213824-4213843 | Msa0869930:intron | 35.0% | |
| TTTATGGAGCTTATGTAACG+AGG | + | chr6_1:4213871-4213890 | Msa0869930:CDS | 35.0% | |
| TAAATACCCTGCGAATGTAT+TGG | - | chr6_1:4213934-4213953 | None:intergenic | 35.0% | |
| ! | GAAGCCAAAGTTGCTTTAAT+TGG | + | chr6_1:4214320-4214339 | Msa0869930:intron | 35.0% |
| ATGCCACTGTCAAAAACTAT+TGG | + | chr6_1:4214503-4214522 | Msa0869930:three_prime_UTR | 35.0% | |
| ! | TTGCCAATAGTTTTTGACAG+TGG | - | chr6_1:4214509-4214528 | None:intergenic | 35.0% |
| !!! | GGAGGCATTTTTGGGATTTT+TGG | + | chr6_1:4212206-4212225 | Msa0869930:intron | 40.0% |
| ACCAAGTGAGCTAAAATCAC+GGG | + | chr6_1:4212369-4212388 | Msa0869930:intron | 40.0% | |
| ATCCAACATAATGCTGCATC+TGG | - | chr6_1:4212509-4212528 | None:intergenic | 40.0% | |
| !! | ATACGGTGTCGACCTAAAAA+TGG | - | chr6_1:4212859-4212878 | None:intergenic | 40.0% |
| GTTATTCATGAGCCTCATAC+AGG | - | chr6_1:4213137-4213156 | None:intergenic | 40.0% | |
| CCAAAAGCTTAGTAACTACG+CGG | - | chr6_1:4213181-4213200 | None:intergenic | 40.0% | |
| CTATACTGCGATCGGAAAAT+GGG | + | chr6_1:4213476-4213495 | Msa0869930:CDS | 40.0% | |
| !! | TATCGATTCCGTGAAGGATT+AGG | + | chr6_1:4213597-4213616 | Msa0869930:CDS | 40.0% |
| ! | TTTGGTAGCCTAATCCTTCA+CGG | - | chr6_1:4213608-4213627 | None:intergenic | 40.0% |
| !! | GAGTATCGCGCTTTGATTTT+AGG | + | chr6_1:4213642-4213661 | Msa0869930:CDS | 40.0% |
| TCATCACATCGCTATCAAAG+GGG | + | chr6_1:4213692-4213711 | Msa0869930:CDS | 40.0% | |
| TGCTGAGGTTTATAGAGTTG+TGG | + | chr6_1:4213756-4213775 | Msa0869930:intron | 40.0% | |
| GCTGCAAAGCTTGACTTTAT+AGG | - | chr6_1:4214222-4214241 | None:intergenic | 40.0% | |
| ! | AATTTGACAGATGGGGTGTC+TGG | + | chr6_1:4212304-4212323 | Msa0869930:intron | 45.0% |
| ! | ATTTGACAGATGGGGTGTCT+GGG | + | chr6_1:4212305-4212324 | Msa0869930:intron | 45.0% |
| !!! | ACCCGTGATTTTAGCTCACT+TGG | - | chr6_1:4212373-4212392 | None:intergenic | 45.0% |
| GTCCAGATGCAGCATTATGT+TGG | + | chr6_1:4212504-4212523 | Msa0869930:intron | 45.0% | |
| GTCGAATCCATGCAAAGCAA+AGG | - | chr6_1:4212686-4212705 | None:intergenic | 45.0% | |
| ACGCGGTGAATCTTATGTCA+CGG | - | chr6_1:4213164-4213183 | None:intergenic | 45.0% | |
| ! | CCGCGTAGTTACTAAGCTTT+TGG | + | chr6_1:4213178-4213197 | Msa0869930:intron | 45.0% |
| GCTATACTGCGATCGGAAAA+TGG | + | chr6_1:4213475-4213494 | Msa0869930:CDS | 45.0% | |
| !! | TAGCTCTATCGATTCCGTGA+AGG | + | chr6_1:4213591-4213610 | Msa0869930:intron | 45.0% |
| GAGCTTATGTAACGAGGCTT+TGG | + | chr6_1:4213877-4213896 | Msa0869930:CDS | 45.0% | |
| CACCATCCAATACATTCGCA+GGG | + | chr6_1:4213925-4213944 | Msa0869930:CDS | 45.0% | |
| TACCCTGCGAATGTATTGGA+TGG | - | chr6_1:4213930-4213949 | None:intergenic | 45.0% | |
| GGAAGCTGAGAAAAGTCTAG+TGG | - | chr6_1:4214166-4214185 | None:intergenic | 45.0% | |
| !! | ATTAATTATATTAACTATTA+CGG | + | chr6_1:4212570-4212589 | Msa0869930:intron | 5.0% |
| !!! | ATAAATAATACATTTTTATA+CGG | + | chr6_1:4212950-4212969 | Msa0869930:intron | 5.0% |
| TGGAGCTATCTCCCTGTATG+AGG | + | chr6_1:4213122-4213141 | Msa0869930:intron | 50.0% | |
| AGCAGGAGCTATACTGCGAT+CGG | + | chr6_1:4213468-4213487 | Msa0869930:CDS | 50.0% | |
| GCGATCGGAAAATGGGAATG+TGG | + | chr6_1:4213483-4213502 | Msa0869930:CDS | 50.0% | |
| TATCAAAGGGGACTCTCAGC+TGG | + | chr6_1:4213704-4213723 | Msa0869930:CDS | 50.0% | |
| !! | TAACGAGGCTTTGGAGCTGA+AGG | + | chr6_1:4213886-4213905 | Msa0869930:CDS | 50.0% |
| !! | AACGAGGCTTTGGAGCTGAA+GGG | + | chr6_1:4213887-4213906 | Msa0869930:CDS | 50.0% |
| GCACCATCCAATACATTCGC+AGG | + | chr6_1:4213924-4213943 | Msa0869930:CDS | 50.0% | |
| AGCTGATGCTCAAGCAAACC+AGG | + | chr6_1:4214119-4214138 | Msa0869930:CDS | 50.0% | |
| GGTCTAACCTCCGAGATAGA+CGG | - | chr6_1:4214145-4214164 | None:intergenic | 50.0% | |
| !! | GAATTTGATGGCGCATCCCG+TGG | + | chr6_1:4213427-4213446 | Msa0869930:CDS | 55.0% |
| AGCTGGTCCAGGATTTCCAC+GGG | - | chr6_1:4213446-4213465 | None:intergenic | 55.0% | |
| CAGCTGGTCCAGGATTTCCA+CGG | - | chr6_1:4213447-4213466 | None:intergenic | 55.0% | |
| AGTATAGCTCCTGCTCCAGC+TGG | - | chr6_1:4213463-4213482 | None:intergenic | 55.0% | |
| CTCTCAGCTGGTTGTCAACC+AGG | + | chr6_1:4213716-4213735 | Msa0869930:CDS | 55.0% | |
| GCAAACCAGGCCGTCTATCT+CGG | + | chr6_1:4214132-4214151 | Msa0869930:CDS | 55.0% | |
| CGTGGAAATCCTGGACCAGC+TGG | + | chr6_1:4213445-4213464 | Msa0869930:CDS | 60.0% | |
| AATCCTGGACCAGCTGGAGC+AGG | + | chr6_1:4213451-4213470 | Msa0869930:CDS | 60.0% | |
| AACCAGGCCGTCTATCTCGG+AGG | + | chr6_1:4214135-4214154 | Msa0869930:CDS | 60.0% | |
| AACCTCCGAGATAGACGGCC+TGG | - | chr6_1:4214140-4214159 | None:intergenic | 60.0% | |
| GGCGCATCCCGTGGAAATCC+TGG | + | chr6_1:4213436-4213455 | Msa0869930:CDS | 65.0% | |
| GCTCCTGCTCCAGCTGGTCC+AGG | - | chr6_1:4213457-4213476 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 4212078 | 4214550 | 4212078 | ID=Msa0869930;Name=Msa0869930 |
| chr6_1 | mRNA | 4212078 | 4214550 | 4212078 | ID=Msa0869930-mRNA-1;Parent=Msa0869930;Name=Msa0869930-mRNA-1;_AED=0.08;_eAED=0.08;_QI=7|0.66|0.57|0.71|0.83|1|7|63|155 |
| chr6_1 | exon | 4212078 | 4212084 | 4212078 | ID=Msa0869930-mRNA-1:exon:1335;Parent=Msa0869930-mRNA-1 |
| chr6_1 | exon | 4212510 | 4212548 | 4212510 | ID=Msa0869930-mRNA-1:exon:1336;Parent=Msa0869930-mRNA-1 |
| chr6_1 | exon | 4213412 | 4213504 | 4213412 | ID=Msa0869930-mRNA-1:exon:1337;Parent=Msa0869930-mRNA-1 |
| chr6_1 | exon | 4213594 | 4213737 | 4213594 | ID=Msa0869930-mRNA-1:exon:1338;Parent=Msa0869930-mRNA-1 |
| chr6_1 | exon | 4213839 | 4213946 | 4213839 | ID=Msa0869930-mRNA-1:exon:1339;Parent=Msa0869930-mRNA-1 |
| chr6_1 | exon | 4214105 | 4214156 | 4214105 | ID=Msa0869930-mRNA-1:exon:1340;Parent=Msa0869930-mRNA-1 |
| chr6_1 | exon | 4214456 | 4214550 | 4214456 | ID=Msa0869930-mRNA-1:exon:1341;Parent=Msa0869930-mRNA-1 |
| chr6_1 | five_prime_UTR | 4212078 | 4212084 | 4212078 | ID=Msa0869930-mRNA-1:five_prime_utr;Parent=Msa0869930-mRNA-1 |
| chr6_1 | CDS | 4212510 | 4212548 | 4212510 | ID=Msa0869930-mRNA-1:cds;Parent=Msa0869930-mRNA-1 |
| chr6_1 | CDS | 4213412 | 4213504 | 4213412 | ID=Msa0869930-mRNA-1:cds;Parent=Msa0869930-mRNA-1 |
| chr6_1 | CDS | 4213594 | 4213737 | 4213594 | ID=Msa0869930-mRNA-1:cds;Parent=Msa0869930-mRNA-1 |
| chr6_1 | CDS | 4213839 | 4213946 | 4213839 | ID=Msa0869930-mRNA-1:cds;Parent=Msa0869930-mRNA-1 |
| chr6_1 | CDS | 4214105 | 4214156 | 4214105 | ID=Msa0869930-mRNA-1:cds;Parent=Msa0869930-mRNA-1 |
| chr6_1 | CDS | 4214456 | 4214487 | 4214456 | ID=Msa0869930-mRNA-1:cds;Parent=Msa0869930-mRNA-1 |
| chr6_1 | three_prime_UTR | 4214488 | 4214550 | 4214488 | ID=Msa0869930-mRNA-1:three_prime_utr;Parent=Msa0869930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
