Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0947480 | XP_013451617.1 | 94.752 | 343 | 18 | 0 | 1 | 343 | 1 | 343 | 0.0 | 675 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0947480 | sp|Q9FMU6|MPCP3_ARATH | 68.033 | 366 | 99 | 3 | 3 | 351 | 6 | 370 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0947480 | 0.806862 | 6.693306e-50 | -8.615850e-47 |
| Msa0009340 | Msa0947480 | 0.808219 | 3.448130e-50 | -8.615850e-47 |
| Msa0734940 | Msa0947480 | 0.819687 | 1.018875e-52 | -8.615850e-47 |
| Msa0770170 | Msa0947480 | 0.819135 | 1.361651e-52 | -8.615850e-47 |
| Msa0775560 | Msa0947480 | 0.836718 | 7.941578e-57 | -8.615850e-47 |
| Msa0805920 | Msa0947480 | 0.811357 | 7.290591e-51 | -8.615850e-47 |
| Msa0812950 | Msa0947480 | 0.855848 | 4.789115e-62 | -8.615850e-47 |
| Msa0364790 | Msa0947480 | 0.843204 | 1.617953e-58 | -8.615850e-47 |
| Msa0456770 | Msa0947480 | 0.810816 | 9.550908e-51 | -8.615850e-47 |
| Msa0302730 | Msa0947480 | 0.802647 | 5.080801e-49 | -8.615850e-47 |
| Msa0496970 | Msa0947480 | 0.812525 | 4.058148e-51 | -8.615850e-47 |
| Msa0524440 | Msa0947480 | 0.810718 | 1.002991e-50 | -8.615850e-47 |
| Msa0853440 | Msa0947480 | 0.852389 | 4.765644e-61 | -8.615850e-47 |
| Msa0882400 | Msa0947480 | 0.909783 | 3.886836e-82 | -8.615850e-47 |
| Msa0947480 | Msa1008400 | 0.806823 | 6.820852e-50 | -8.615850e-47 |
| Msa0947480 | Msa1013070 | 0.833711 | 4.558210e-56 | -8.615850e-47 |
| Msa0947480 | Msa1023300 | 0.815526 | 8.837101e-52 | -8.615850e-47 |
| Msa0947480 | Msa1023310 | 0.823292 | 1.498652e-53 | -8.615850e-47 |
| Msa0947480 | Msa1094280 | 0.846681 | 1.864851e-59 | -8.615850e-47 |
| Msa0947480 | Msa1107190 | 0.806314 | 8.736896e-50 | -8.615850e-47 |
| Msa0947480 | Msa1107200 | 0.818541 | 1.857841e-52 | -8.615850e-47 |
| Msa0947480 | Msa1150780 | 0.817652 | 2.950517e-52 | -8.615850e-47 |
| Msa0947480 | Msa1150800 | 0.802881 | 4.545498e-49 | -8.615850e-47 |
| Msa0947480 | Msa1208370 | 0.802395 | 5.724944e-49 | -8.615850e-47 |
| Msa0947480 | Msa1229610 | 0.801417 | 9.095450e-49 | -8.615850e-47 |
| Msa0947480 | Msa1280170 | 0.812338 | 4.457185e-51 | -8.615850e-47 |
| Msa0947480 | Msa1310220 | 0.805777 | 1.133190e-49 | -8.615850e-47 |
| Msa0947480 | Msa1335230 | 0.821780 | 3.365859e-53 | -8.615850e-47 |
| Msa0947480 | Msa1352660 | 0.847902 | 8.616058e-60 | -8.615850e-47 |
| Msa0947480 | Msa1421210 | 0.855541 | 5.886826e-62 | -8.615850e-47 |
| Msa0947480 | Msa1423820 | 0.811503 | 6.777302e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0947480 | MtrunA17_Chr6g0461981 | 94.752 | 343 | 18 | 0 | 1 | 343 | 1 | 343 | 0.0 | 675 |
| Msa0947480 | MtrunA17_Chr7g0251981 | 70.506 | 356 | 95 | 3 | 3 | 349 | 14 | 368 | 0.0 | 518 |
| Msa0947480 | MtrunA17_Chr8g0385891 | 75.585 | 299 | 69 | 1 | 39 | 337 | 53 | 347 | 7.94e-173 | 484 |
| Msa0947480 | MtrunA17_Chr5g0407451 | 49.129 | 287 | 142 | 1 | 58 | 344 | 16 | 298 | 2.81e-100 | 298 |
| Msa0947480 | MtrunA17_Chr4g0051841 | 43.793 | 290 | 161 | 1 | 57 | 344 | 23 | 312 | 5.53e-92 | 278 |
| Msa0947480 | MtrunA17_Chr6g0463351 | 25.979 | 281 | 174 | 9 | 73 | 335 | 77 | 341 | 1.51e-15 | 77.0 |
| Msa0947480 | MtrunA17_Chr8g0347451 | 26.000 | 200 | 124 | 5 | 64 | 239 | 154 | 353 | 5.60e-15 | 75.1 |
| Msa0947480 | MtrunA17_Chr8g0347451 | 27.948 | 229 | 147 | 6 | 64 | 279 | 52 | 275 | 1.92e-13 | 70.5 |
| Msa0947480 | MtrunA17_Chr5g0396801 | 25.758 | 198 | 125 | 5 | 64 | 239 | 141 | 338 | 1.29e-14 | 73.9 |
| Msa0947480 | MtrunA17_Chr5g0396801 | 28.384 | 229 | 146 | 7 | 64 | 279 | 39 | 262 | 8.05e-13 | 68.6 |
| Msa0947480 | MtrunA17_Chr8g0372531 | 26.852 | 216 | 125 | 7 | 47 | 239 | 100 | 305 | 2.38e-14 | 72.8 |
| Msa0947480 | MtrunA17_Chr8g0372531 | 26.590 | 173 | 109 | 5 | 79 | 239 | 30 | 196 | 4.00e-11 | 63.2 |
| Msa0947480 | MtrunA17_Chr5g0431531 | 27.374 | 179 | 121 | 2 | 58 | 233 | 34 | 206 | 3.11e-14 | 72.8 |
| Msa0947480 | MtrunA17_Chr8g0385571 | 27.962 | 211 | 143 | 5 | 64 | 271 | 228 | 432 | 4.23e-14 | 73.2 |
| Msa0947480 | MtrunA17_Chr8g0385571 | 26.404 | 178 | 120 | 4 | 66 | 235 | 324 | 498 | 1.84e-12 | 68.2 |
| Msa0947480 | MtrunA17_Chr1g0149111 | 26.667 | 195 | 139 | 3 | 64 | 258 | 140 | 330 | 6.81e-14 | 72.4 |
| Msa0947480 | MtrunA17_Chr1g0149111 | 31.395 | 172 | 106 | 5 | 69 | 233 | 238 | 404 | 4.51e-13 | 69.7 |
| Msa0947480 | MtrunA17_Chr7g0252401 | 26.596 | 282 | 191 | 8 | 64 | 337 | 208 | 481 | 7.82e-14 | 72.4 |
| Msa0947480 | MtrunA17_Chr3g0131501 | 27.442 | 215 | 139 | 6 | 64 | 271 | 206 | 410 | 2.48e-13 | 70.9 |
| Msa0947480 | MtrunA17_Chr3g0137941 | 29.379 | 177 | 112 | 4 | 61 | 233 | 220 | 387 | 5.16e-13 | 69.7 |
| Msa0947480 | MtrunA17_Chr3g0137941 | 23.256 | 215 | 161 | 3 | 44 | 258 | 103 | 313 | 4.09e-12 | 67.0 |
| Msa0947480 | MtrunA17_Chr8g0386871 | 24.926 | 337 | 213 | 14 | 18 | 340 | 286 | 596 | 1.54e-12 | 68.6 |
| Msa0947480 | MtrunA17_Chr4g0067231 | 22.176 | 239 | 159 | 4 | 65 | 279 | 16 | 251 | 1.93e-12 | 67.4 |
| Msa0947480 | MtrunA17_Chr4g0067231 | 23.902 | 205 | 127 | 7 | 59 | 239 | 126 | 325 | 8.63e-12 | 65.5 |
| Msa0947480 | MtrunA17_Chr7g0241521 | 26.432 | 227 | 135 | 8 | 72 | 279 | 26 | 239 | 2.87e-12 | 66.6 |
| Msa0947480 | MtrunA17_Chr3g0133111 | 25.097 | 259 | 154 | 6 | 59 | 289 | 6 | 252 | 3.05e-12 | 66.6 |
| Msa0947480 | MtrunA17_Chr2g0296061 | 26.768 | 198 | 118 | 7 | 59 | 233 | 125 | 318 | 4.40e-12 | 66.2 |
| Msa0947480 | MtrunA17_Chr2g0296061 | 23.140 | 242 | 161 | 5 | 60 | 279 | 12 | 250 | 9.12e-12 | 65.5 |
| Msa0947480 | MtrunA17_Chr7g0240341 | 26.036 | 169 | 113 | 4 | 79 | 239 | 150 | 314 | 9.11e-12 | 65.5 |
| Msa0947480 | MtrunA17_Chr4g0063561 | 25.405 | 185 | 132 | 3 | 61 | 242 | 216 | 397 | 1.23e-11 | 65.5 |
| Msa0947480 | MtrunA17_Chr4g0063561 | 22.826 | 276 | 177 | 9 | 7 | 257 | 48 | 312 | 1.98e-11 | 64.7 |
| Msa0947480 | MtrunA17_Chr7g0269701 | 26.486 | 185 | 125 | 4 | 73 | 248 | 133 | 315 | 1.83e-11 | 64.3 |
| Msa0947480 | MtrunA17_Chr1g0195101 | 26.744 | 172 | 108 | 5 | 77 | 235 | 33 | 199 | 2.57e-11 | 63.9 |
| Msa0947480 | MtrunA17_Chr4g0008061 | 26.872 | 227 | 134 | 8 | 72 | 279 | 24 | 237 | 5.71e-11 | 62.8 |
| Msa0947480 | MtrunA17_Chr7g0242311 | 24.725 | 182 | 124 | 5 | 70 | 250 | 193 | 362 | 7.82e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0947480 | AT5G14040.1 | 68.033 | 366 | 99 | 3 | 3 | 351 | 6 | 370 | 0.0 | 516 |
| Msa0947480 | AT3G48850.1 | 68.644 | 354 | 98 | 3 | 2 | 346 | 5 | 354 | 0.0 | 508 |
| Msa0947480 | AT2G17270.1 | 48.667 | 300 | 149 | 3 | 52 | 351 | 11 | 305 | 1.55e-103 | 307 |
| Msa0947480 | AT5G51050.1 | 27.305 | 282 | 189 | 7 | 64 | 337 | 224 | 497 | 5.13e-18 | 85.5 |
| Msa0947480 | AT5G66380.1 | 27.232 | 224 | 126 | 9 | 49 | 249 | 99 | 308 | 1.71e-15 | 76.6 |
| Msa0947480 | AT1G25380.1 | 29.730 | 185 | 114 | 6 | 73 | 245 | 131 | 311 | 2.22e-14 | 73.9 |
| Msa0947480 | AT1G25380.2 | 29.730 | 185 | 114 | 6 | 73 | 245 | 131 | 311 | 2.22e-14 | 73.9 |
| Msa0947480 | AT4G01100.2 | 25.795 | 283 | 178 | 8 | 23 | 279 | 4 | 280 | 2.60e-14 | 73.6 |
| Msa0947480 | AT4G01100.2 | 25.000 | 200 | 126 | 5 | 64 | 239 | 159 | 358 | 1.65e-12 | 68.2 |
| Msa0947480 | AT4G01100.1 | 26.296 | 270 | 179 | 8 | 23 | 279 | 4 | 266 | 6.83e-14 | 72.4 |
| Msa0947480 | AT4G01100.1 | 25.000 | 200 | 126 | 5 | 64 | 239 | 145 | 344 | 1.21e-12 | 68.6 |
| Msa0947480 | AT3G20240.1 | 23.913 | 322 | 201 | 9 | 36 | 332 | 34 | 336 | 4.03e-13 | 70.1 |
| Msa0947480 | AT4G03115.3 | 25.952 | 289 | 182 | 11 | 20 | 299 | 30 | 295 | 4.29e-13 | 70.1 |
| Msa0947480 | AT4G03115.1 | 26.415 | 265 | 167 | 10 | 44 | 299 | 18 | 263 | 5.96e-13 | 69.3 |
| Msa0947480 | AT3G53940.1 | 25.581 | 172 | 116 | 4 | 76 | 239 | 193 | 360 | 8.65e-13 | 69.3 |
| Msa0947480 | AT4G01100.3 | 25.000 | 200 | 126 | 5 | 64 | 239 | 95 | 294 | 9.46e-13 | 68.6 |
| Msa0947480 | AT4G01100.3 | 26.941 | 219 | 146 | 6 | 72 | 279 | 1 | 216 | 7.43e-12 | 65.9 |
| Msa0947480 | AT1G07030.1 | 26.590 | 173 | 118 | 2 | 64 | 233 | 41 | 207 | 9.71e-13 | 68.6 |
| Msa0947480 | AT3G54110.1 | 25.094 | 267 | 157 | 10 | 46 | 291 | 4 | 248 | 3.82e-12 | 66.6 |
| Msa0947480 | AT2G30160.1 | 24.324 | 222 | 145 | 4 | 36 | 250 | 25 | 230 | 4.88e-12 | 66.6 |
| Msa0947480 | AT5G01500.1 | 27.684 | 177 | 120 | 4 | 64 | 239 | 219 | 388 | 5.80e-12 | 67.0 |
| Msa0947480 | AT4G03115.4 | 26.923 | 208 | 132 | 7 | 44 | 242 | 18 | 214 | 7.06e-12 | 64.7 |
| Msa0947480 | AT4G03115.2 | 26.923 | 208 | 132 | 7 | 44 | 242 | 18 | 214 | 7.88e-12 | 64.7 |
| Msa0947480 | AT3G21390.2 | 26.866 | 201 | 118 | 7 | 59 | 233 | 149 | 346 | 8.49e-12 | 66.2 |
| Msa0947480 | AT3G21390.1 | 26.866 | 201 | 118 | 7 | 59 | 233 | 127 | 324 | 8.85e-12 | 65.9 |
| Msa0947480 | AT4G32400.1 | 29.412 | 170 | 112 | 4 | 69 | 233 | 213 | 379 | 9.85e-12 | 66.2 |
| Msa0947480 | AT4G32400.1 | 24.590 | 244 | 172 | 5 | 64 | 307 | 115 | 346 | 4.91e-11 | 63.9 |
| Msa0947480 | AT2G37890.1 | 26.163 | 172 | 115 | 4 | 76 | 239 | 165 | 332 | 1.96e-11 | 64.7 |
| Msa0947480 | AT5G48970.2 | 26.263 | 198 | 122 | 5 | 59 | 233 | 61 | 257 | 2.72e-11 | 63.9 |
| Msa0947480 | AT5G48970.1 | 26.263 | 198 | 122 | 5 | 59 | 233 | 132 | 328 | 2.83e-11 | 64.3 |
| Msa0947480 | AT5G48970.1 | 23.673 | 245 | 159 | 6 | 60 | 279 | 19 | 260 | 5.42e-11 | 63.5 |
| Msa0947480 | AT1G79900.1 | 25.397 | 189 | 137 | 3 | 59 | 247 | 106 | 290 | 2.89e-11 | 63.9 |
| Msa0947480 | AT2G33820.1 | 25.847 | 236 | 157 | 7 | 79 | 300 | 34 | 265 | 4.20e-11 | 63.5 |
| Msa0947480 | AT3G51870.1 | 22.093 | 172 | 126 | 3 | 69 | 239 | 196 | 360 | 4.53e-11 | 63.9 |
| Msa0947480 | AT4G11440.1 | 24.176 | 273 | 188 | 6 | 75 | 337 | 342 | 605 | 5.67e-11 | 64.3 |
| Msa0947480 | AT4G11440.2 | 24.176 | 273 | 188 | 6 | 75 | 337 | 342 | 605 | 5.67e-11 | 64.3 |
| Msa0947480 | AT5G58970.2 | 27.511 | 229 | 130 | 9 | 72 | 279 | 25 | 238 | 5.76e-11 | 62.8 |
| Msa0947480 | AT5G58970.1 | 26.446 | 242 | 142 | 9 | 59 | 279 | 12 | 238 | 8.14e-11 | 62.8 |
| Msa0947480 | AT4G26180.1 | 22.256 | 328 | 188 | 9 | 50 | 338 | 13 | 312 | 8.14e-11 | 62.8 |
Find 116 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCTATTTCTTAGCTTAT+TGG | 0.140288 | 6_3:+30368324 | Msa0947480:three_prime_UTR |
| TCCTTCAGATCTGAGCAATT+TGG | 0.187636 | 6_3:-30366503 | None:intergenic |
| GCACAAGGTGCTTTCAAATA+TGG | 0.247065 | 6_3:+30366283 | Msa0947480:CDS |
| TTGTCCATTTGAGGCAATTA+AGG | 0.262012 | 6_3:+30366429 | Msa0947480:CDS |
| CAAGGGCGTTGTACCTCTTT+GGG | 0.263647 | 6_3:+30366961 | Msa0947480:CDS |
| TCTCCCTCTTCGAATTCTTA+TGG | 0.265900 | 6_3:+30367840 | Msa0947480:CDS |
| TCCAACTTATTCCAAGGAAT+TGG | 0.279817 | 6_3:+30365374 | Msa0947480:five_prime_UTR |
| CAAAGCTAAGAAGCAGAAAT+TGG | 0.284982 | 6_3:-30368070 | None:intergenic |
| ACAAGGGCGTTGTACCTCTT+TGG | 0.286638 | 6_3:+30366960 | Msa0947480:CDS |
| CTGTGAAGAAGTTGGGATTA+TGG | 0.287366 | 6_3:+30367800 | Msa0947480:CDS |
| TGCCTATTTCTTAGCTTATT+GGG | 0.288130 | 6_3:+30368325 | Msa0947480:three_prime_UTR |
| AGAAAACAAAGCAGCCAATT+TGG | 0.288907 | 6_3:+30365350 | Msa0947480:five_prime_UTR |
| ATACAAAGAATGAATTAGTT+TGG | 0.293752 | 6_3:-30365435 | None:intergenic |
| TTCCCAATAAGCTAAGAAAT+AGG | 0.311689 | 6_3:-30368327 | None:intergenic |
| TTGAGTTATTACAGTACTTT+TGG | 0.313024 | 6_3:-30368298 | None:intergenic |
| ATCAGCAGCAGTTGCTCCTT+TGG | 0.315192 | 6_3:-30367432 | None:intergenic |
| GGATGGGCACCAACATTTCT+TGG | 0.315259 | 6_3:+30366253 | Msa0947480:CDS |
| AGGAGCATCCCCTCAGGATT+TGG | 0.317455 | 6_3:+30366190 | Msa0947480:CDS |
| CAAAGGATTGCCAAAGCTAA+TGG | 0.320773 | 6_3:+30368169 | Msa0947480:three_prime_UTR |
| AACTCTAACCGGAGCTCAAT+GGG | 0.324460 | 6_3:+30367867 | Msa0947480:CDS |
| GGAATAAGTTGGAGCCAAAT+TGG | 0.325790 | 6_3:-30365364 | None:intergenic |
| ATTCCTTCTCCCAATGAATC+TGG | 0.330813 | 6_3:+30365608 | Msa0947480:CDS |
| CCTTCAGATCTGAGCAATTT+GGG | 0.337308 | 6_3:-30366502 | None:intergenic |
| TGTGAAGAAGTTGGGATTAT+GGG | 0.338340 | 6_3:+30367801 | Msa0947480:CDS |
| ATTCCTTCTCCCAGATTCAT+TGG | 0.347199 | 6_3:-30365618 | None:intergenic |
| ACGATCCATGGAGAAATAAA+TGG | 0.356383 | 6_3:-30365477 | None:intergenic |
| TATTCTTTCTCCCAATTCCT+TGG | 0.374570 | 6_3:-30365385 | None:intergenic |
| CACAAGGTGCTTTCAAATAT+GGG | 0.381124 | 6_3:+30366284 | Msa0947480:CDS |
| CTCAGATCTGAAGGAGTCTC+AGG | 0.382857 | 6_3:+30366511 | Msa0947480:CDS |
| TACTATCTTGCTTGCGCAGT+TGG | 0.388384 | 6_3:+30365662 | Msa0947480:CDS |
| GTGCATTCTTCCTTTGGTGT+AGG | 0.391511 | 6_3:-30367302 | None:intergenic |
| CTTATGGTTGGAACTCTAAC+CGG | 0.393210 | 6_3:+30367856 | Msa0947480:CDS |
| TTATAGATATTACTTTAGTT+AGG | 0.394269 | 6_3:+30368227 | Msa0947480:three_prime_UTR |
| CCCAATTCCTTGGAATAAGT+TGG | 0.395287 | 6_3:-30365375 | None:intergenic |
| CTCAAGGAACAAGGAGTTAG+AGG | 0.409377 | 6_3:+30366220 | Msa0947480:CDS |
| GGATGCTCCTGTACTTGGTT+GGG | 0.420320 | 6_3:-30366177 | None:intergenic |
| CCAACTTATTCCAAGGAATT+GGG | 0.421212 | 6_3:+30365375 | Msa0947480:five_prime_UTR |
| TGAGGGGATGCTCCTGTACT+TGG | 0.422203 | 6_3:-30366182 | None:intergenic |
| AAGACATTAGTCTACCTTGC+TGG | 0.423131 | 6_3:+30366370 | Msa0947480:CDS |
| TGGACCAACAACATCTGAAT+AGG | 0.423609 | 6_3:-30366329 | None:intergenic |
| TTTGCTAGAGGTCTTTCTGA+TGG | 0.431106 | 6_3:+30366475 | Msa0947480:CDS |
| AAAGGATTGCCAAAGCTAAT+GGG | 0.431332 | 6_3:+30368170 | Msa0947480:three_prime_UTR |
| CTAACCTTAATTGCCTCAAA+TGG | 0.433715 | 6_3:-30366433 | None:intergenic |
| TGCATTCTTCCTTTGGTGTA+GGG | 0.436971 | 6_3:-30367301 | None:intergenic |
| CTTTGCCATTTATTTCTCCA+TGG | 0.439217 | 6_3:+30365472 | Msa0947480:exon |
| CCTCTTCGAATTCTTATGGT+TGG | 0.441909 | 6_3:+30367844 | Msa0947480:CDS |
| GGGATGCTCCTGTACTTGGT+TGG | 0.444579 | 6_3:-30366178 | None:intergenic |
| TTCCTTCTCCCAGATTCATT+GGG | 0.444921 | 6_3:-30365617 | None:intergenic |
| TTGTTGTGGATTTACTCATA+TGG | 0.450811 | 6_3:+30365694 | Msa0947480:CDS |
| CAATGATTTCAGGTTGTACA+AGG | 0.451404 | 6_3:+30366943 | Msa0947480:intron |
| TCCTTTATCAGGCCAACCAC+TGG | 0.452524 | 6_3:+30368031 | Msa0947480:intron |
| CAACACTCACACCAAGTTGT+AGG | 0.458197 | 6_3:-30367331 | None:intergenic |
| TGTTGCACTTTGTCCATTTG+AGG | 0.466804 | 6_3:+30366420 | Msa0947480:CDS |
| TGTACCTCTTTGGGGAAGAC+AGG | 0.478056 | 6_3:+30366970 | Msa0947480:CDS |
| GAACTCTAACCGGAGCTCAA+TGG | 0.482681 | 6_3:+30367866 | Msa0947480:CDS |
| CAACTTGGTGTGAGTGTTGT+CGG | 0.483390 | 6_3:+30367335 | Msa0947480:CDS |
| CCCAAATTGCTCAGATCTGA+AGG | 0.485546 | 6_3:+30366502 | Msa0947480:CDS |
| AACACTCACACCAAGTTGTA+GGG | 0.491562 | 6_3:-30367330 | None:intergenic |
| TATCTTGCTTGCGCAGTTGG+TGG | 0.493630 | 6_3:+30365665 | Msa0947480:CDS |
| GGAGAAGGAATCATAAACTT+AGG | 0.500798 | 6_3:-30365596 | None:intergenic |
| TTTGGCTCCAACTTATTCCA+AGG | 0.520392 | 6_3:+30365368 | Msa0947480:five_prime_UTR |
| TTGCTCCTTTGGAACTGTTG+AGG | 0.524603 | 6_3:-30367421 | None:intergenic |
| AGATTGACCCAACCAAGTAC+AGG | 0.537808 | 6_3:+30366170 | Msa0947480:intron |
| TTCCTTCTCCCAATGAATCT+GGG | 0.538204 | 6_3:+30365609 | Msa0947480:CDS |
| CTCCCAGATTCATTGGGAGA+AGG | 0.540347 | 6_3:-30365611 | None:intergenic |
| AAAGAGACAAGATTATCTGC+AGG | 0.540708 | 6_3:-30367398 | None:intergenic |
| CACAACTGCACATAATATAC+CGG | 0.540838 | 6_3:-30367369 | None:intergenic |
| TGATGCATTCAAAGTTTCTG+TGG | 0.542954 | 6_3:+30367897 | Msa0947480:CDS |
| AAGTCCTATTCAGATGTTGT+TGG | 0.545723 | 6_3:+30366325 | Msa0947480:CDS |
| ATAAATTCCCCATTGAGCTC+CGG | 0.548121 | 6_3:-30367875 | None:intergenic |
| CTCCCAATGAATCTGGGAGA+AGG | 0.550640 | 6_3:+30365615 | Msa0947480:CDS |
| TGCTGGATCAGCTTCTGCTG+AGG | 0.551750 | 6_3:+30366387 | Msa0947480:CDS |
| GATGCATTCAAAGTTTCTGT+GGG | 0.552496 | 6_3:+30367898 | Msa0947480:CDS |
| AGCATCACTCCAAATCCTGA+GGG | 0.557889 | 6_3:-30366199 | None:intergenic |
| TGGTATGAGAGAACGATCCA+TGG | 0.563363 | 6_3:-30365489 | None:intergenic |
| TCTTTCCTCAACAGTTCCAA+AGG | 0.563971 | 6_3:+30367416 | Msa0947480:CDS |
| AAGGGCGTTGTACCTCTTTG+GGG | 0.565393 | 6_3:+30366962 | Msa0947480:CDS |
| TAAGAAGCAGAAATTGGAGC+AGG | 0.565573 | 6_3:-30368064 | None:intergenic |
| GAGATTCCACCGCCACATGA+TGG | 0.566406 | 6_3:-30365574 | None:intergenic |
| ATGCAGGCTGTGAAGAAGTT+GGG | 0.568691 | 6_3:+30367793 | Msa0947480:intron |
| GTAGTGGAGTAGAGGAAGCT+TGG | 0.569621 | 6_3:-30365509 | None:intergenic |
| GATAGTTTGCTTGCGAAACA+AGG | 0.571138 | 6_3:+30368117 | Msa0947480:three_prime_UTR |
| GTCGCCGCAAAAGAAGATCA+TGG | 0.574662 | 6_3:+30365535 | Msa0947480:CDS |
| TAGCATCCATCATGTGGCGG+TGG | 0.575499 | 6_3:+30365568 | Msa0947480:CDS |
| TTTATCAGGCCAACCACTGG+TGG | 0.576104 | 6_3:+30368034 | Msa0947480:intron |
| AATGCAGGCTGTGAAGAAGT+TGG | 0.576794 | 6_3:+30367792 | Msa0947480:intron |
| GTTGTCGGTGGATATTTAGC+CGG | 0.581741 | 6_3:+30367350 | Msa0947480:CDS |
| GGAGCAACACCACCAGTGGT+TGG | 0.584791 | 6_3:-30368043 | None:intergenic |
| GTTAGAGTTCAAACTCAACC+TGG | 0.590024 | 6_3:+30366451 | Msa0947480:CDS |
| AAGTACAGGAGCATCCCCTC+AGG | 0.596215 | 6_3:+30366184 | Msa0947480:CDS |
| GTTGGTGGAAGTATTTGTTG+TGG | 0.606656 | 6_3:+30365680 | Msa0947480:CDS |
| TTACATTTGACAAGATCAAG+AGG | 0.607792 | 6_3:-30365725 | None:intergenic |
| TTTCTTGGTTACAGTGCACA+AGG | 0.613928 | 6_3:+30366268 | Msa0947480:CDS |
| GTGAAGAAGTTGGGATTATG+GGG | 0.615409 | 6_3:+30367802 | Msa0947480:CDS |
| GCGACGATGTAGTGGAGTAG+AGG | 0.615490 | 6_3:-30365517 | None:intergenic |
| TCTTGTCAAATGTAACATGC+AGG | 0.616213 | 6_3:+30365733 | Msa0947480:CDS |
| GGAGTGATGCTCAAGGAACA+AGG | 0.620748 | 6_3:+30366211 | Msa0947480:CDS |
| AAGAGAGCTTAAATAAACAA+AGG | 0.621488 | 6_3:+30368152 | Msa0947480:three_prime_UTR |
| CAGCAGAAGCTGATCCAGCA+AGG | 0.621627 | 6_3:-30366384 | None:intergenic |
| GAGCATCACTCCAAATCCTG+AGG | 0.621812 | 6_3:-30366200 | None:intergenic |
| CAACCATAAGAATTCGAAGA+GGG | 0.629648 | 6_3:-30367843 | None:intergenic |
| TTCTAGCATCCATCATGTGG+CGG | 0.631246 | 6_3:+30365565 | Msa0947480:CDS |
| CGTTTCTAGCATCCATCATG+TGG | 0.632850 | 6_3:+30365562 | Msa0947480:CDS |
| AGGATTTGGAGTGATGCTCA+AGG | 0.637160 | 6_3:+30366204 | Msa0947480:CDS |
| AGCAGGAGCAACACCACCAG+TGG | 0.646134 | 6_3:-30368047 | None:intergenic |
| GCATGTCATCCCTACACCAA+AGG | 0.647049 | 6_3:+30367292 | Msa0947480:CDS |
| GGAACCTGTCTTCCCCAAAG+AGG | 0.653133 | 6_3:-30366974 | None:intergenic |
| GCACTGTAACCAAGAAATGT+TGG | 0.663444 | 6_3:-30366262 | None:intergenic |
| GAAAGACCTCTAGCAAAACC+AGG | 0.669110 | 6_3:-30366469 | None:intergenic |
| TCAGATCTGAAGGAGTCTCA+GGG | 0.672635 | 6_3:+30366512 | Msa0947480:CDS |
| AATGATTTCAGGTTGTACAA+GGG | 0.688012 | 6_3:+30366944 | Msa0947480:intron |
| ACTCTAACCGGAGCTCAATG+GGG | 0.705197 | 6_3:+30367868 | Msa0947480:CDS |
| CTTGGTGTGAGTGTTGTCGG+TGG | 0.705258 | 6_3:+30367338 | Msa0947480:CDS |
| TTATGGGGTATGTGTACACG+CGG | 0.708012 | 6_3:+30367817 | Msa0947480:CDS |
| CCAACCATAAGAATTCGAAG+AGG | 0.749924 | 6_3:-30367844 | None:intergenic |
| GCATCACTCCAAATCCTGAG+GGG | 0.752683 | 6_3:-30366198 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTGTTAATAATTTTGTA+TGG | + | chr6_3:30366698-30366717 | Msa0947480:intron | 15.0% |
| !!! | ATGTCTTTTATTATTCAATT+TGG | - | chr6_3:30366725-30366744 | None:intergenic | 15.0% |
| !! | AATAATAAAAGACATAATAG+AGG | + | chr6_3:30366730-30366749 | Msa0947480:intron | 15.0% |
| !!! | TACTAACATTTTTTTTATGT+AGG | - | chr6_3:30367539-30367558 | None:intergenic | 15.0% |
| !!! | TGAATTTGTTTAGATTATTA+CGG | + | chr6_3:30367992-30368011 | Msa0947480:intron | 15.0% |
| !! | TTATAGATATTACTTTAGTT+AGG | + | chr6_3:30368227-30368246 | Msa0947480:three_prime_UTR | 15.0% |
| !! | ATACAAAGAATGAATTAGTT+TGG | - | chr6_3:30365438-30365457 | None:intergenic | 20.0% |
| !! | TAAATGGCAAAGAAAAATAT+GGG | - | chr6_3:30365464-30365483 | None:intergenic | 20.0% |
| !! | ATAAATGGCAAAGAAAAATA+TGG | - | chr6_3:30365465-30365484 | None:intergenic | 20.0% |
| !!! | TTATATTTTGTAGCATATTC+TGG | - | chr6_3:30366352-30366371 | None:intergenic | 20.0% |
| !!! | ATAATACCTCTGTAATTTTT+TGG | + | chr6_3:30366555-30366574 | Msa0947480:intron | 20.0% |
| !!! | GTTTATGAATTTTGATAGAT+TGG | + | chr6_3:30366819-30366838 | Msa0947480:intron | 20.0% |
| !! | AATCTTCAAGAAGTTTAAAA+TGG | + | chr6_3:30366872-30366891 | Msa0947480:intron | 20.0% |
| !! | CTGCAATAAAAAAACATTAT+AGG | - | chr6_3:30367220-30367239 | None:intergenic | 20.0% |
| !!! | AAAATTGTTTTTCCTTTATC+AGG | + | chr6_3:30368020-30368039 | Msa0947480:intron | 20.0% |
| ! | CCTAAAATAATGTAAAAGCA+TGG | - | chr6_3:30365807-30365826 | None:intergenic | 25.0% |
| !! | CCATGCTTTTACATTATTTT+AGG | + | chr6_3:30365804-30365823 | Msa0947480:intron | 25.0% |
| ! | TATCAACCAAAAAATTACAG+AGG | - | chr6_3:30366564-30366583 | None:intergenic | 25.0% |
| ! | ATCAAAATGCCAAAATTGTT+AGG | - | chr6_3:30366657-30366676 | None:intergenic | 25.0% |
| ! | TGTTTCTCATTCTAGATATT+AGG | + | chr6_3:30366899-30366918 | Msa0947480:intron | 25.0% |
| ! | ATGAAATGTACAATGATTTC+AGG | + | chr6_3:30366933-30366952 | Msa0947480:intron | 25.0% |
| ! | AATAAGTGTAGAAACTTACA+TGG | - | chr6_3:30366998-30367017 | None:intergenic | 25.0% |
| !!! | AGGAAACAAAAAGTATTATC+AGG | - | chr6_3:30367075-30367094 | None:intergenic | 25.0% |
| !! | GTTATATTTCTATGAAAGAG+CGG | - | chr6_3:30367509-30367528 | None:intergenic | 25.0% |
| ! | AATCTTGTCAAACAAGAAAA+GGG | + | chr6_3:30367604-30367623 | Msa0947480:intron | 25.0% |
| !!! | TGTATTTTATTTAGTATCGC+TGG | + | chr6_3:30367653-30367672 | Msa0947480:intron | 25.0% |
| ! | GTCAATAACAATGATGAATT+AGG | - | chr6_3:30367762-30367781 | None:intergenic | 25.0% |
| !!! | TCTAGTTCTGATATATTGAT+TGG | + | chr6_3:30367954-30367973 | Msa0947480:intron | 25.0% |
| ! | AAGAGAGCTTAAATAAACAA+AGG | + | chr6_3:30368152-30368171 | Msa0947480:three_prime_UTR | 25.0% |
| !! | TAAAAAATTCCCATTAGCTT+TGG | - | chr6_3:30368182-30368201 | None:intergenic | 25.0% |
| !! | TTGAGTTATTACAGTACTTT+TGG | - | chr6_3:30368301-30368320 | None:intergenic | 25.0% |
| TTGTTGTGGATTTACTCATA+TGG | + | chr6_3:30365694-30365713 | Msa0947480:CDS | 30.0% | |
| TTACATTTGACAAGATCAAG+AGG | - | chr6_3:30365728-30365747 | None:intergenic | 30.0% | |
| TGGAAAATCTTCAATGCAAA+GGG | - | chr6_3:30365787-30365806 | None:intergenic | 30.0% | |
| ATGGAAAATCTTCAATGCAA+AGG | - | chr6_3:30365788-30365807 | None:intergenic | 30.0% | |
| !!! | TTTTTGGTTGATAGACGAAA+TGG | + | chr6_3:30366571-30366590 | Msa0947480:intron | 30.0% |
| !! | AATGATTTCAGGTTGTACAA+GGG | + | chr6_3:30366944-30366963 | Msa0947480:intron | 30.0% |
| ! | TAATCCGCAGTTTTCTTAAT+CGG | - | chr6_3:30367109-30367128 | None:intergenic | 30.0% |
| TTAGTTTATTGTTCACACTG+TGG | - | chr6_3:30367191-30367210 | None:intergenic | 30.0% | |
| GTGAATTTCATCCAATAATC+GGG | - | chr6_3:30367581-30367600 | None:intergenic | 30.0% | |
| CGTGAATTTCATCCAATAAT+CGG | - | chr6_3:30367582-30367601 | None:intergenic | 30.0% | |
| CAATCTTGTCAAACAAGAAA+AGG | + | chr6_3:30367603-30367622 | Msa0947480:intron | 30.0% | |
| CATAGATTCCACTTTCAATT+CGG | - | chr6_3:30367635-30367654 | None:intergenic | 30.0% | |
| TTGACTATACTTTGTAATGC+AGG | + | chr6_3:30367777-30367796 | Msa0947480:intron | 30.0% | |
| ! | TTGCCTATTTCTTAGCTTAT+TGG | + | chr6_3:30368324-30368343 | Msa0947480:three_prime_UTR | 30.0% |
| ! | TGCCTATTTCTTAGCTTATT+GGG | + | chr6_3:30368325-30368344 | Msa0947480:three_prime_UTR | 30.0% |
| TTCCCAATAAGCTAAGAAAT+AGG | - | chr6_3:30368330-30368349 | None:intergenic | 30.0% | |
| AGAAAACAAAGCAGCCAATT+TGG | + | chr6_3:30365350-30365369 | Msa0947480:five_prime_UTR | 35.0% | |
| TCCAACTTATTCCAAGGAAT+TGG | + | chr6_3:30365374-30365393 | Msa0947480:five_prime_UTR | 35.0% | |
| CCAACTTATTCCAAGGAATT+GGG | + | chr6_3:30365375-30365394 | Msa0947480:five_prime_UTR | 35.0% | |
| TATTCTTTCTCCCAATTCCT+TGG | - | chr6_3:30365388-30365407 | None:intergenic | 35.0% | |
| ! | CTTTGCCATTTATTTCTCCA+TGG | + | chr6_3:30365472-30365491 | Msa0947480:exon | 35.0% |
| ACGATCCATGGAGAAATAAA+TGG | - | chr6_3:30365480-30365499 | None:intergenic | 35.0% | |
| ! | TCTTCCATGATCTTCTTTTG+CGG | - | chr6_3:30365542-30365561 | None:intergenic | 35.0% |
| GGAGAAGGAATCATAAACTT+AGG | - | chr6_3:30365599-30365618 | None:intergenic | 35.0% | |
| TCTTGTCAAATGTAACATGC+AGG | + | chr6_3:30365733-30365752 | Msa0947480:CDS | 35.0% | |
| !! | TTAGAGGATTTTTCAGAGGA+TGG | + | chr6_3:30366236-30366255 | Msa0947480:CDS | 35.0% |
| !! | TAGAGGATTTTTCAGAGGAT+GGG | + | chr6_3:30366237-30366256 | Msa0947480:CDS | 35.0% |
| ! | CACAAGGTGCTTTCAAATAT+GGG | + | chr6_3:30366284-30366303 | Msa0947480:CDS | 35.0% |
| AAGTCCTATTCAGATGTTGT+TGG | + | chr6_3:30366325-30366344 | Msa0947480:CDS | 35.0% | |
| ! | TTGTCCATTTGAGGCAATTA+AGG | + | chr6_3:30366429-30366448 | Msa0947480:CDS | 35.0% |
| CTAACCTTAATTGCCTCAAA+TGG | - | chr6_3:30366436-30366455 | None:intergenic | 35.0% | |
| AGTCATTAGAAACTCACATG+AGG | + | chr6_3:30366598-30366617 | Msa0947480:intron | 35.0% | |
| ATCAGTTGAGCAAGGATTTA+TGG | + | chr6_3:30366675-30366694 | Msa0947480:intron | 35.0% | |
| TTGATACTCGAACATGTCTA+TGG | - | chr6_3:30366770-30366789 | None:intergenic | 35.0% | |
| !! | CAATGATTTCAGGTTGTACA+AGG | + | chr6_3:30366943-30366962 | Msa0947480:intron | 35.0% |
| !! | CTTAATCGGTTCATTTTAGC+AGG | - | chr6_3:30367095-30367114 | None:intergenic | 35.0% |
| TGAACCGATTAAGAAAACTG+CGG | + | chr6_3:30367102-30367121 | Msa0947480:intron | 35.0% | |
| TTATTGTTCACACTGTGGAA+CGG | - | chr6_3:30367186-30367205 | None:intergenic | 35.0% | |
| ! | GTTTTTGTGCATTCTTCCTT+TGG | - | chr6_3:30367311-30367330 | None:intergenic | 35.0% |
| CACAACTGCACATAATATAC+CGG | - | chr6_3:30367372-30367391 | None:intergenic | 35.0% | |
| AAAGAGACAAGATTATCTGC+AGG | - | chr6_3:30367401-30367420 | None:intergenic | 35.0% | |
| GGGACTAAAATAAGAAAGAG+CGG | - | chr6_3:30367479-30367498 | None:intergenic | 35.0% | |
| TATGAAAGAGCGGTAGTTTA+GGG | - | chr6_3:30367499-30367518 | None:intergenic | 35.0% | |
| TGTGAAGAAGTTGGGATTAT+GGG | + | chr6_3:30367801-30367820 | Msa0947480:CDS | 35.0% | |
| CAACCATAAGAATTCGAAGA+GGG | - | chr6_3:30367846-30367865 | None:intergenic | 35.0% | |
| TGATGCATTCAAAGTTTCTG+TGG | + | chr6_3:30367897-30367916 | Msa0947480:CDS | 35.0% | |
| GATGCATTCAAAGTTTCTGT+GGG | + | chr6_3:30367898-30367917 | Msa0947480:CDS | 35.0% | |
| CAAAGCTAAGAAGCAGAAAT+TGG | - | chr6_3:30368073-30368092 | None:intergenic | 35.0% | |
| AAAGGATTGCCAAAGCTAAT+GGG | + | chr6_3:30368170-30368189 | Msa0947480:three_prime_UTR | 35.0% | |
| ! | GGAATAAGTTGGAGCCAAAT+TGG | - | chr6_3:30365367-30365386 | None:intergenic | 40.0% |
| ! | TTTGGCTCCAACTTATTCCA+AGG | + | chr6_3:30365368-30365387 | Msa0947480:five_prime_UTR | 40.0% |
| CCCAATTCCTTGGAATAAGT+TGG | - | chr6_3:30365378-30365397 | None:intergenic | 40.0% | |
| ATTCCTTCTCCCAATGAATC+TGG | + | chr6_3:30365608-30365627 | Msa0947480:CDS | 40.0% | |
| TTCCTTCTCCCAATGAATCT+GGG | + | chr6_3:30365609-30365628 | Msa0947480:CDS | 40.0% | |
| TTCCTTCTCCCAGATTCATT+GGG | - | chr6_3:30365620-30365639 | None:intergenic | 40.0% | |
| ATTCCTTCTCCCAGATTCAT+TGG | - | chr6_3:30365621-30365640 | None:intergenic | 40.0% | |
| !! | GTTGGTGGAAGTATTTGTTG+TGG | + | chr6_3:30365680-30365699 | Msa0947480:CDS | 40.0% |
| GTCAAATGTAACATGCAGGT+TGG | + | chr6_3:30365737-30365756 | Msa0947480:intron | 40.0% | |
| !! | GGAGTTAGAGGATTTTTCAG+AGG | + | chr6_3:30366232-30366251 | Msa0947480:CDS | 40.0% |
| GCACTGTAACCAAGAAATGT+TGG | - | chr6_3:30366265-30366284 | None:intergenic | 40.0% | |
| TTTCTTGGTTACAGTGCACA+AGG | + | chr6_3:30366268-30366287 | Msa0947480:CDS | 40.0% | |
| ! | GCACAAGGTGCTTTCAAATA+TGG | + | chr6_3:30366283-30366302 | Msa0947480:CDS | 40.0% |
| TGGACCAACAACATCTGAAT+AGG | - | chr6_3:30366332-30366351 | None:intergenic | 40.0% | |
| ! | AAGACATTAGTCTACCTTGC+TGG | + | chr6_3:30366370-30366389 | Msa0947480:CDS | 40.0% |
| TGTTGCACTTTGTCCATTTG+AGG | + | chr6_3:30366420-30366439 | Msa0947480:CDS | 40.0% | |
| GTTAGAGTTCAAACTCAACC+TGG | + | chr6_3:30366451-30366470 | Msa0947480:CDS | 40.0% | |
| TTTGCTAGAGGTCTTTCTGA+TGG | + | chr6_3:30366475-30366494 | Msa0947480:CDS | 40.0% | |
| CCTTCAGATCTGAGCAATTT+GGG | - | chr6_3:30366505-30366524 | None:intergenic | 40.0% | |
| TCCTTCAGATCTGAGCAATT+TGG | - | chr6_3:30366506-30366525 | None:intergenic | 40.0% | |
| AGAAACTCACATGAGGAATC+AGG | + | chr6_3:30366605-30366624 | Msa0947480:intron | 40.0% | |
| GAAACTCACATGAGGAATCA+GGG | + | chr6_3:30366606-30366625 | Msa0947480:intron | 40.0% | |
| ! | AGCGTTTGGCCTAACAATTT+TGG | + | chr6_3:30366645-30366664 | Msa0947480:intron | 40.0% |
| !! | GCATTTTGATCAGTTGAGCA+AGG | + | chr6_3:30366667-30366686 | Msa0947480:intron | 40.0% |
| ! | TGCATTCTTCCTTTGGTGTA+GGG | - | chr6_3:30367304-30367323 | None:intergenic | 40.0% |
| TGCACAAAAACCCTACAACT+TGG | + | chr6_3:30367320-30367339 | Msa0947480:CDS | 40.0% | |
| AACACTCACACCAAGTTGTA+GGG | - | chr6_3:30367333-30367352 | None:intergenic | 40.0% | |
| TCTTTCCTCAACAGTTCCAA+AGG | + | chr6_3:30367416-30367435 | Msa0947480:CDS | 40.0% | |
| CTATGAAAGAGCGGTAGTTT+AGG | - | chr6_3:30367500-30367519 | None:intergenic | 40.0% | |
| CTGTGAAGAAGTTGGGATTA+TGG | + | chr6_3:30367800-30367819 | Msa0947480:CDS | 40.0% | |
| GTGAAGAAGTTGGGATTATG+GGG | + | chr6_3:30367802-30367821 | Msa0947480:CDS | 40.0% | |
| TCTCCCTCTTCGAATTCTTA+TGG | + | chr6_3:30367840-30367859 | Msa0947480:CDS | 40.0% | |
| CCAACCATAAGAATTCGAAG+AGG | - | chr6_3:30367847-30367866 | None:intergenic | 40.0% | |
| CCTCTTCGAATTCTTATGGT+TGG | + | chr6_3:30367844-30367863 | Msa0947480:CDS | 40.0% | |
| CTTATGGTTGGAACTCTAAC+CGG | + | chr6_3:30367856-30367875 | Msa0947480:CDS | 40.0% | |
| ATAAATTCCCCATTGAGCTC+CGG | - | chr6_3:30367878-30367897 | None:intergenic | 40.0% | |
| TAAGAAGCAGAAATTGGAGC+AGG | - | chr6_3:30368067-30368086 | None:intergenic | 40.0% | |
| !! | GATAGTTTGCTTGCGAAACA+AGG | + | chr6_3:30368117-30368136 | Msa0947480:three_prime_UTR | 40.0% |
| CAAAGGATTGCCAAAGCTAA+TGG | + | chr6_3:30368169-30368188 | Msa0947480:three_prime_UTR | 40.0% | |
| TGGTATGAGAGAACGATCCA+TGG | - | chr6_3:30365492-30365511 | None:intergenic | 45.0% | |
| !! | CGTTTCTAGCATCCATCATG+TGG | + | chr6_3:30365562-30365581 | Msa0947480:CDS | 45.0% |
| TTCTAGCATCCATCATGTGG+CGG | + | chr6_3:30365565-30365584 | Msa0947480:CDS | 45.0% | |
| TACTATCTTGCTTGCGCAGT+TGG | + | chr6_3:30365662-30365681 | Msa0947480:CDS | 45.0% | |
| AGATTGACCCAACCAAGTAC+AGG | + | chr6_3:30366170-30366189 | Msa0947480:intron | 45.0% | |
| AGCATCACTCCAAATCCTGA+GGG | - | chr6_3:30366202-30366221 | None:intergenic | 45.0% | |
| ! | AGGATTTGGAGTGATGCTCA+AGG | + | chr6_3:30366204-30366223 | Msa0947480:CDS | 45.0% |
| CTCAAGGAACAAGGAGTTAG+AGG | + | chr6_3:30366220-30366239 | Msa0947480:CDS | 45.0% | |
| !!! | ACTCAACCTGGTTTTGCTAG+AGG | + | chr6_3:30366463-30366482 | Msa0947480:CDS | 45.0% |
| GAAAGACCTCTAGCAAAACC+AGG | - | chr6_3:30366472-30366491 | None:intergenic | 45.0% | |
| CCCAAATTGCTCAGATCTGA+AGG | + | chr6_3:30366502-30366521 | Msa0947480:CDS | 45.0% | |
| TCAGATCTGAAGGAGTCTCA+GGG | + | chr6_3:30366512-30366531 | Msa0947480:CDS | 45.0% | |
| AGGAATCAGGGTTTGAACCT+CGG | + | chr6_3:30366618-30366637 | Msa0947480:intron | 45.0% | |
| ! | CCAATTTGTCGGTTGGTTCT+CGG | - | chr6_3:30367141-30367160 | None:intergenic | 45.0% |
| GGTTGAACGAGCCAATTTGT+CGG | - | chr6_3:30367152-30367171 | None:intergenic | 45.0% | |
| ! | GTGCATTCTTCCTTTGGTGT+AGG | - | chr6_3:30367305-30367324 | None:intergenic | 45.0% |
| CAACACTCACACCAAGTTGT+AGG | - | chr6_3:30367334-30367353 | None:intergenic | 45.0% | |
| !! | CAACTTGGTGTGAGTGTTGT+CGG | + | chr6_3:30367335-30367354 | Msa0947480:CDS | 45.0% |
| GTTGTCGGTGGATATTTAGC+CGG | + | chr6_3:30367350-30367369 | Msa0947480:CDS | 45.0% | |
| !! | TTGCTCCTTTGGAACTGTTG+AGG | - | chr6_3:30367424-30367443 | None:intergenic | 45.0% |
| TTTAGCGTGCTCCCGATTAT+TGG | + | chr6_3:30367567-30367586 | Msa0947480:intron | 45.0% | |
| AATGCAGGCTGTGAAGAAGT+TGG | + | chr6_3:30367792-30367811 | Msa0947480:intron | 45.0% | |
| ATGCAGGCTGTGAAGAAGTT+GGG | + | chr6_3:30367793-30367812 | Msa0947480:intron | 45.0% | |
| TTATGGGGTATGTGTACACG+CGG | + | chr6_3:30367817-30367836 | Msa0947480:CDS | 45.0% | |
| AACTCTAACCGGAGCTCAAT+GGG | + | chr6_3:30367867-30367886 | Msa0947480:CDS | 45.0% | |
| ! | GTAGTGGAGTAGAGGAAGCT+TGG | - | chr6_3:30365512-30365531 | None:intergenic | 50.0% |
| GTCGCCGCAAAAGAAGATCA+TGG | + | chr6_3:30365535-30365554 | Msa0947480:CDS | 50.0% | |
| CTCCCAGATTCATTGGGAGA+AGG | - | chr6_3:30365614-30365633 | None:intergenic | 50.0% | |
| CTCCCAATGAATCTGGGAGA+AGG | + | chr6_3:30365615-30365634 | Msa0947480:CDS | 50.0% | |
| TATCTTGCTTGCGCAGTTGG+TGG | + | chr6_3:30365665-30365684 | Msa0947480:CDS | 50.0% | |
| GGATGCTCCTGTACTTGGTT+GGG | - | chr6_3:30366180-30366199 | None:intergenic | 50.0% | |
| GCATCACTCCAAATCCTGAG+GGG | - | chr6_3:30366201-30366220 | None:intergenic | 50.0% | |
| GAGCATCACTCCAAATCCTG+AGG | - | chr6_3:30366203-30366222 | None:intergenic | 50.0% | |
| GGAGTGATGCTCAAGGAACA+AGG | + | chr6_3:30366211-30366230 | Msa0947480:CDS | 50.0% | |
| GGATGGGCACCAACATTTCT+TGG | + | chr6_3:30366253-30366272 | Msa0947480:CDS | 50.0% | |
| CTCAGATCTGAAGGAGTCTC+AGG | + | chr6_3:30366511-30366530 | Msa0947480:CDS | 50.0% | |
| !! | ACAAGGGCGTTGTACCTCTT+TGG | + | chr6_3:30366960-30366979 | Msa0947480:CDS | 50.0% |
| !! | CAAGGGCGTTGTACCTCTTT+GGG | + | chr6_3:30366961-30366980 | Msa0947480:CDS | 50.0% |
| !! | AAGGGCGTTGTACCTCTTTG+GGG | + | chr6_3:30366962-30366981 | Msa0947480:CDS | 50.0% |
| ! | TGTACCTCTTTGGGGAAGAC+AGG | + | chr6_3:30366970-30366989 | Msa0947480:CDS | 50.0% |
| ! | GTCGGTTGGTTCTCGGTAAT+TGG | - | chr6_3:30367134-30367153 | None:intergenic | 50.0% |
| CCGAGAACCAACCGACAAAT+TGG | + | chr6_3:30367138-30367157 | Msa0947480:intron | 50.0% | |
| GAACGAGCCAATTTGTCGGT+TGG | - | chr6_3:30367148-30367167 | None:intergenic | 50.0% | |
| TGTGGAACGGTTCGTTCAAC+TGG | - | chr6_3:30367173-30367192 | None:intergenic | 50.0% | |
| GCATGTCATCCCTACACCAA+AGG | + | chr6_3:30367292-30367311 | Msa0947480:CDS | 50.0% | |
| ATCAGCAGCAGTTGCTCCTT+TGG | - | chr6_3:30367435-30367454 | None:intergenic | 50.0% | |
| GGGTCTCACCGAATTGAAAG+TGG | + | chr6_3:30367624-30367643 | Msa0947480:intron | 50.0% | |
| GAACTCTAACCGGAGCTCAA+TGG | + | chr6_3:30367866-30367885 | Msa0947480:CDS | 50.0% | |
| ACTCTAACCGGAGCTCAATG+GGG | + | chr6_3:30367868-30367887 | Msa0947480:CDS | 50.0% | |
| TCCTTTATCAGGCCAACCAC+TGG | + | chr6_3:30368031-30368050 | Msa0947480:intron | 50.0% | |
| !! | ACCAGTGGTTGGCCTGATAA+AGG | - | chr6_3:30368035-30368054 | None:intergenic | 50.0% |
| TTTATCAGGCCAACCACTGG+TGG | + | chr6_3:30368034-30368053 | Msa0947480:intron | 50.0% | |
| ! | GCGACGATGTAGTGGAGTAG+AGG | - | chr6_3:30365520-30365539 | None:intergenic | 55.0% |
| ! | CTTTTGCGGCGACGATGTAG+TGG | - | chr6_3:30365528-30365547 | None:intergenic | 55.0% |
| TAGCATCCATCATGTGGCGG+TGG | + | chr6_3:30365568-30365587 | Msa0947480:CDS | 55.0% | |
| GAGATTCCACCGCCACATGA+TGG | - | chr6_3:30365577-30365596 | None:intergenic | 55.0% | |
| GGGATGCTCCTGTACTTGGT+TGG | - | chr6_3:30366181-30366200 | None:intergenic | 55.0% | |
| TGAGGGGATGCTCCTGTACT+TGG | - | chr6_3:30366185-30366204 | None:intergenic | 55.0% | |
| !! | AAGTACAGGAGCATCCCCTC+AGG | + | chr6_3:30366184-30366203 | Msa0947480:CDS | 55.0% |
| !! | AGGAGCATCCCCTCAGGATT+TGG | + | chr6_3:30366190-30366209 | Msa0947480:CDS | 55.0% |
| CAGCAGAAGCTGATCCAGCA+AGG | - | chr6_3:30366387-30366406 | None:intergenic | 55.0% | |
| TGCTGGATCAGCTTCTGCTG+AGG | + | chr6_3:30366387-30366406 | Msa0947480:CDS | 55.0% | |
| TGAACCTCGGTCACAGCGTT+TGG | + | chr6_3:30366631-30366650 | Msa0947480:intron | 55.0% | |
| GGAACCTGTCTTCCCCAAAG+AGG | - | chr6_3:30366977-30366996 | None:intergenic | 55.0% | |
| ! | CTTGGTGTGAGTGTTGTCGG+TGG | + | chr6_3:30367338-30367357 | Msa0947480:CDS | 55.0% |
| TAGGCCAAACGCTGTGACCG+AGG | - | chr6_3:30366638-30366657 | None:intergenic | 60.0% | |
| GGAGCAACACCACCAGTGGT+TGG | - | chr6_3:30368046-30368065 | None:intergenic | 60.0% | |
| AGCAGGAGCAACACCACCAG+TGG | - | chr6_3:30368050-30368069 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 30365350 | 30368426 | 30365350 | ID=Msa0947480;Name=Msa0947480 |
| chr6_3 | mRNA | 30365350 | 30368426 | 30365350 | ID=Msa0947480-mRNA-1;Parent=Msa0947480;Name=Msa0947480-mRNA-1;_AED=0.03;_eAED=0.03;_QI=141|1|1|1|1|1|6|339|351 |
| chr6_3 | exon | 30365350 | 30365754 | 30365350 | ID=Msa0947480-mRNA-1:exon:8022;Parent=Msa0947480-mRNA-1 |
| chr6_3 | exon | 30366172 | 30366533 | 30366172 | ID=Msa0947480-mRNA-1:exon:8023;Parent=Msa0947480-mRNA-1 |
| chr6_3 | exon | 30366955 | 30366998 | 30366955 | ID=Msa0947480-mRNA-1:exon:8024;Parent=Msa0947480-mRNA-1 |
| chr6_3 | exon | 30367240 | 30367454 | 30367240 | ID=Msa0947480-mRNA-1:exon:8025;Parent=Msa0947480-mRNA-1 |
| chr6_3 | exon | 30367799 | 30367923 | 30367799 | ID=Msa0947480-mRNA-1:exon:8026;Parent=Msa0947480-mRNA-1 |
| chr6_3 | exon | 30368042 | 30368426 | 30368042 | ID=Msa0947480-mRNA-1:exon:8027;Parent=Msa0947480-mRNA-1 |
| chr6_3 | five_prime_UTR | 30365350 | 30365490 | 30365350 | ID=Msa0947480-mRNA-1:five_prime_utr;Parent=Msa0947480-mRNA-1 |
| chr6_3 | CDS | 30365491 | 30365754 | 30365491 | ID=Msa0947480-mRNA-1:cds;Parent=Msa0947480-mRNA-1 |
| chr6_3 | CDS | 30366172 | 30366533 | 30366172 | ID=Msa0947480-mRNA-1:cds;Parent=Msa0947480-mRNA-1 |
| chr6_3 | CDS | 30366955 | 30366998 | 30366955 | ID=Msa0947480-mRNA-1:cds;Parent=Msa0947480-mRNA-1 |
| chr6_3 | CDS | 30367240 | 30367454 | 30367240 | ID=Msa0947480-mRNA-1:cds;Parent=Msa0947480-mRNA-1 |
| chr6_3 | CDS | 30367799 | 30367923 | 30367799 | ID=Msa0947480-mRNA-1:cds;Parent=Msa0947480-mRNA-1 |
| chr6_3 | CDS | 30368042 | 30368087 | 30368042 | ID=Msa0947480-mRNA-1:cds;Parent=Msa0947480-mRNA-1 |
| chr6_3 | three_prime_UTR | 30368088 | 30368426 | 30368088 | ID=Msa0947480-mRNA-1:three_prime_utr;Parent=Msa0947480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
