Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772510 | XP_024639943.1 | 91.737 | 472 | 22 | 1 | 1 | 472 | 1 | 455 | 0.0 | 800 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772510 | G7K9G9 | 91.737 | 472 | 22 | 1 | 1 | 472 | 1 | 455 | 0.0 | 800 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030200 | Msa0772510 | 0.802492 | 5.467565e-49 | -8.615850e-47 |
| Msa0772510 | Msa0798480 | 0.946008 | 1.044589e-104 | -8.615850e-47 |
| Msa0772510 | Msa0799310 | 0.800522 | 1.385237e-48 | -8.615850e-47 |
| Msa0772510 | Msa1356400 | 0.832717 | 8.062211e-56 | -8.615850e-47 |
| Msa0164770 | Msa0772510 | 0.802246 | 6.145587e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772510 | MtrunA17_Chr5g0403081 | 91.737 | 472 | 22 | 1 | 1 | 472 | 1 | 455 | 0.0 | 800 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772510 | AT4G37210.1 | 48.430 | 446 | 167 | 11 | 57 | 469 | 74 | 489 | 7.86e-116 | 349 |
| Msa0772510 | AT4G37210.2 | 47.734 | 331 | 123 | 5 | 57 | 366 | 74 | 375 | 3.44e-85 | 267 |
Find 147 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAATGAGGGTTTGGGTTT+TGG | 0.051805 | 5_2:-46870676 | None:intergenic |
| ATTATATGCATGTTCCTTTA+AGG | 0.122207 | 5_2:+46874414 | Msa0772510:three_prime_UTR |
| TTCTTCAACCATGGTGATTT+TGG | 0.123936 | 5_2:-46870758 | None:intergenic |
| AAGAGGGAAAATTGAGATTT+TGG | 0.150990 | 5_2:-46870708 | None:intergenic |
| TGAGGAAGCCGTTGCTTATT+TGG | 0.172827 | 5_2:+46873592 | Msa0772510:CDS |
| ATCTCAGCGAGAATTGATTT+TGG | 0.224515 | 5_2:-46873883 | None:intergenic |
| CAATTTGCTCAATGAGGGTT+TGG | 0.248194 | 5_2:-46870683 | None:intergenic |
| ACCAAAATCATTCTCCTTCA+TGG | 0.252070 | 5_2:-46870986 | None:intergenic |
| TTTGGCGACTCTTTGAATTA+TGG | 0.252411 | 5_2:+46874212 | Msa0772510:three_prime_UTR |
| TTAAGGTTTGGTGCTGAATT+AGG | 0.253160 | 5_2:+46874431 | Msa0772510:three_prime_UTR |
| AATTCAGCACCAAACCTTAA+AGG | 0.260157 | 5_2:-46874428 | None:intergenic |
| ATCAACAGAGTTGCCCATTA+TGG | 0.268360 | 5_2:+46872007 | Msa0772510:intron |
| GCCATGAAGGAGAATGATTT+TGG | 0.276030 | 5_2:+46870985 | Msa0772510:CDS |
| TGGAGACTCCTCCTGCTTCT+TGG | 0.302677 | 5_2:-46872125 | None:intergenic |
| ATCTTCCTGGTCGTTCTTAC+CGG | 0.304993 | 5_2:-46872977 | None:intergenic |
| CCTCCAAACACAAGCATATA+CGG | 0.321319 | 5_2:-46873556 | None:intergenic |
| TATCAACTTGTTCCATAGTA+TGG | 0.325848 | 5_2:-46873113 | None:intergenic |
| CGGGAGCAAGTTCACCATAA+TGG | 0.339759 | 5_2:-46872021 | None:intergenic |
| ATGCATGTTCCTTTAAGGTT+TGG | 0.341040 | 5_2:+46874419 | Msa0772510:three_prime_UTR |
| CACTATCCTCATCATCTTCC+TGG | 0.352582 | 5_2:-46872990 | None:intergenic |
| ATTTCTTATTTCACAAGTTA+AGG | 0.352836 | 5_2:-46873531 | None:intergenic |
| TCTTCGCTTGTTTCTAATGC+TGG | 0.357966 | 5_2:-46874126 | None:intergenic |
| GGAGACTCCTCCTGCTTCTT+GGG | 0.358489 | 5_2:-46872124 | None:intergenic |
| GTCCACACATACTACAAATA+TGG | 0.368782 | 5_2:+46872049 | Msa0772510:CDS |
| CTGGTTCAACCAGCTGTTCT+AGG | 0.369035 | 5_2:-46873312 | None:intergenic |
| TTTCCGTATATGCTTGTGTT+TGG | 0.380312 | 5_2:+46873553 | Msa0772510:CDS |
| CGCAGGTCTCTCAAGTGAAC+TGG | 0.386407 | 5_2:+46873742 | Msa0772510:CDS |
| TTCCTTTCCACTGCCTGCCT+TGG | 0.387277 | 5_2:-46873917 | None:intergenic |
| AGACGAGTCTGACCTGGATT+TGG | 0.388595 | 5_2:+46873041 | Msa0772510:CDS |
| AAAGCAATCTGTCCATACTA+TGG | 0.392176 | 5_2:+46873101 | Msa0772510:CDS |
| TCAGGAGGAAGCCGATCCTT+TGG | 0.393753 | 5_2:+46872093 | Msa0772510:CDS |
| GGGAGCAAGTTCACCATAAT+GGG | 0.399197 | 5_2:-46872020 | None:intergenic |
| TCAGCAATGTTTCTATCATC+TGG | 0.400267 | 5_2:-46873331 | None:intergenic |
| AATTTGCTCAATGAGGGTTT+GGG | 0.404009 | 5_2:-46870682 | None:intergenic |
| GGATTCCACGGCGGGGTTGA+CGG | 0.406936 | 5_2:-46870878 | None:intergenic |
| CAGGAGGAAGCCGATCCTTT+GGG | 0.407516 | 5_2:+46872094 | Msa0772510:CDS |
| TTTGTATGGAATGATGAGTT+TGG | 0.415931 | 5_2:+46874194 | Msa0772510:three_prime_UTR |
| CTAGGATGGATAGAGCCTTC+TGG | 0.419799 | 5_2:-46873294 | None:intergenic |
| GTCACACATCTTGGTGTAGT+AGG | 0.440218 | 5_2:+46874045 | Msa0772510:CDS |
| GTTGCGGCGGATTCCACGGC+GGG | 0.447328 | 5_2:-46870886 | None:intergenic |
| AGACTTCTGACCGTCGCTGC+TGG | 0.447523 | 5_2:-46870923 | None:intergenic |
| CCGTATATGCTTGTGTTTGG+AGG | 0.449286 | 5_2:+46873556 | Msa0772510:CDS |
| GGCTGATGAGCTGATGGAAA+AGG | 0.453203 | 5_2:+46870954 | Msa0772510:CDS |
| CGCAATTGAGTTATTAGTCT+CGG | 0.463063 | 5_2:-46873693 | None:intergenic |
| ATAGCCGTGCTCTTGAGATC+AGG | 0.468923 | 5_2:+46871025 | Msa0772510:CDS |
| CTTCACAGGTCCATCTTTGT+CGG | 0.471230 | 5_2:-46872155 | None:intergenic |
| GTGGTTTAGGGTTCCGTCGA+CGG | 0.471495 | 5_2:-46870839 | None:intergenic |
| AAATAAGCAACGGCTTCCTC+AGG | 0.479407 | 5_2:-46873590 | None:intergenic |
| GAAGGCTACATCTGTTTGTA+AGG | 0.480775 | 5_2:+46873616 | Msa0772510:CDS |
| GTGACAGGTTCGGTTGGTTG+AGG | 0.484148 | 5_2:-46870814 | None:intergenic |
| CGACTCTTTGAATTATGGAT+AGG | 0.484982 | 5_2:+46874217 | Msa0772510:three_prime_UTR |
| AACATTGGCAGATGTTGCTC+TGG | 0.486208 | 5_2:+46873143 | Msa0772510:CDS |
| CAGCGACGGTCAGAAGTCTC+TGG | 0.488675 | 5_2:+46870927 | Msa0772510:CDS |
| CATTATCCACTTCTGACTCC+TGG | 0.495772 | 5_2:-46872249 | None:intergenic |
| CTCAAGTGAACTGGAAAAGA+AGG | 0.499187 | 5_2:+46873751 | Msa0772510:CDS |
| ACAAATTCTTGCAAATTCCA+TGG | 0.500578 | 5_2:+46874240 | Msa0772510:three_prime_UTR |
| GCTCACACCAATGGATCTGC+TGG | 0.500908 | 5_2:+46874021 | Msa0772510:CDS |
| CAGGAGTCAGAAGTGGATAA+TGG | 0.501825 | 5_2:+46872250 | Msa0772510:CDS |
| GGGTGCTGTTCCCAAGAAGC+AGG | 0.502021 | 5_2:+46872114 | Msa0772510:CDS |
| GTTCCGTCGACGGCTGTGAC+AGG | 0.511248 | 5_2:-46870829 | None:intergenic |
| CCACATGGCGCCGACAAAGA+TGG | 0.513330 | 5_2:+46872145 | Msa0772510:CDS |
| TGGCAACGCATGATTTATAC+TGG | 0.515317 | 5_2:+46874161 | Msa0772510:exon |
| TCTGCTGGAGTCACACATCT+TGG | 0.516862 | 5_2:+46874036 | Msa0772510:CDS |
| TCTATCCATCCTAGAACAGC+TGG | 0.517147 | 5_2:+46873303 | Msa0772510:CDS |
| GTCGACGGCTGTGACAGGTT+CGG | 0.517732 | 5_2:-46870824 | None:intergenic |
| GCATTCATAGCACCCTTCAC+AGG | 0.519577 | 5_2:-46872169 | None:intergenic |
| ATTGGTGTGAGCGGTTGAAA+TGG | 0.519732 | 5_2:-46874010 | None:intergenic |
| TGGTTCAATTTGCTCAATGA+GGG | 0.522169 | 5_2:-46870688 | None:intergenic |
| CGACAAAGATGGACCTGTGA+AGG | 0.523351 | 5_2:+46872156 | Msa0772510:CDS |
| TGCACTGTTATACAAGGCTC+AGG | 0.523635 | 5_2:+46872075 | Msa0772510:CDS |
| TGATGAAGACGAGTCTGACC+TGG | 0.523764 | 5_2:+46873035 | Msa0772510:CDS |
| GTGTGAGCGGTTGAAATGGT+TGG | 0.526499 | 5_2:-46874006 | None:intergenic |
| TGTAGGTTTATGTGTAGCTA+AGG | 0.527384 | 5_2:+46874305 | Msa0772510:three_prime_UTR |
| GCATCTGCCAAGGCAGGCAG+TGG | 0.528560 | 5_2:+46873910 | Msa0772510:CDS |
| ATTCTAGCATCTGCCAAGGC+AGG | 0.536075 | 5_2:+46873904 | Msa0772510:CDS |
| ATCCGCCGCAACTTCTGCTC+CGG | 0.538164 | 5_2:+46870897 | Msa0772510:CDS |
| AGCCGTTGCTTATTTGGAGA+AGG | 0.538307 | 5_2:+46873598 | Msa0772510:CDS |
| GGACATGGCTGATGAGCTGA+TGG | 0.539014 | 5_2:+46870948 | Msa0772510:CDS |
| TGACCGTCGCTGCTGGACGC+CGG | 0.541151 | 5_2:-46870916 | None:intergenic |
| ACCGCTCTCTGAAATTGTAA+AGG | 0.543783 | 5_2:-46870590 | None:intergenic |
| AGTTGGAGTTTCTTCAACCA+TGG | 0.544227 | 5_2:-46870767 | None:intergenic |
| TTGGTTCAATTTGCTCAATG+AGG | 0.544377 | 5_2:-46870689 | None:intergenic |
| GGATAGTGATACTGAAGAGT+TGG | 0.545697 | 5_2:+46873005 | Msa0772510:CDS |
| TCACACATCTTGGTGTAGTA+GGG | 0.546130 | 5_2:+46874046 | Msa0772510:CDS |
| GCAGATGTTGCTCTGGAAAG+AGG | 0.547971 | 5_2:+46873150 | Msa0772510:CDS |
| CGGTCAGAAGTCTCTGGACA+TGG | 0.548472 | 5_2:+46870933 | Msa0772510:CDS |
| AGAAGTTGCGGCGGATTCCA+CGG | 0.555375 | 5_2:-46870890 | None:intergenic |
| TTCAACCAGCTGTTCTAGGA+TGG | 0.560558 | 5_2:-46873308 | None:intergenic |
| AAAGGGAAACAAGGCCATGA+AGG | 0.561352 | 5_2:+46870972 | Msa0772510:CDS |
| CCATCTTTGTCGGCGCCATG+TGG | 0.566588 | 5_2:-46872145 | None:intergenic |
| ATTTCAACCGCTCACACCAA+TGG | 0.569574 | 5_2:+46874012 | Msa0772510:CDS |
| GTAGTATGTGTGGACACACT+CGG | 0.570065 | 5_2:-46872041 | None:intergenic |
| AACCATATTTGTAGTATGTG+TGG | 0.571397 | 5_2:-46872051 | None:intergenic |
| AATGCTTGCTTCTGCCACGC+TGG | 0.573158 | 5_2:-46874094 | None:intergenic |
| CATCTTGGTGTAGTAGGGAG+AGG | 0.573263 | 5_2:+46874051 | Msa0772510:CDS |
| TGTGACTCCAGCAGATCCAT+TGG | 0.573283 | 5_2:-46874028 | None:intergenic |
| GCTCCGGCGTCCAGCAGCGA+CGG | 0.574197 | 5_2:+46870913 | Msa0772510:CDS |
| ACGGCTGTGACAGGTTCGGT+TGG | 0.577242 | 5_2:-46870820 | None:intergenic |
| ACGGAAGTCTCAGATGCAGT+TGG | 0.578153 | 5_2:-46870784 | None:intergenic |
| GGGAACAGCACCCAAAGGAT+CGG | 0.585670 | 5_2:-46872104 | None:intergenic |
| AGCAGATCCATTGGTGTGAG+CGG | 0.586600 | 5_2:-46874019 | None:intergenic |
| AAGAGTGAGCTCCTCACAGT+TGG | 0.588916 | 5_2:+46873951 | Msa0772510:CDS |
| GCTGATGAGCTGATGGAAAA+GGG | 0.592738 | 5_2:+46870955 | Msa0772510:CDS |
| ACCTTTACAATTTCAGAGAG+CGG | 0.592961 | 5_2:+46870589 | Msa0772510:five_prime_UTR |
| AAACAACCAGGAGTCAGAAG+TGG | 0.594428 | 5_2:+46872243 | Msa0772510:CDS |
| GAACCTGTCACAGCCGTCGA+CGG | 0.603391 | 5_2:+46870826 | Msa0772510:CDS |
| GGACGCCGGAGCAGAAGTTG+CGG | 0.603423 | 5_2:-46870902 | None:intergenic |
| GAACATGCATATAATACTAA+CGG | 0.604036 | 5_2:-46874406 | None:intergenic |
| TGGTTGTGCACTGTTATACA+AGG | 0.606143 | 5_2:+46872069 | Msa0772510:CDS |
| TGCCAAGGCAGGCAGTGGAA+AGG | 0.606956 | 5_2:+46873915 | Msa0772510:CDS |
| AGTCTGACCTGGATTTGGCA+TGG | 0.608986 | 5_2:+46873046 | Msa0772510:CDS |
| CGCCGGAGCAGAAGTTGCGG+CGG | 0.609161 | 5_2:-46870899 | None:intergenic |
| GAGCTCACTCTTGCTAGAGA+TGG | 0.609882 | 5_2:-46873940 | None:intergenic |
| GACAAAGATGGACCTGTGAA+GGG | 0.610152 | 5_2:+46872157 | Msa0772510:CDS |
| TAGTATGTGTGGACACACTC+GGG | 0.612826 | 5_2:-46872040 | None:intergenic |
| TTCCACGGCGGGGTTGACGG+TGG | 0.613242 | 5_2:-46870875 | None:intergenic |
| GGAGGTTAGTTCAAAACCTG+AGG | 0.614213 | 5_2:+46873574 | Msa0772510:CDS |
| TTCTTGGGAACAGCACCCAA+AGG | 0.615458 | 5_2:-46872109 | None:intergenic |
| GAACGACCAGGAAGATGATG+AGG | 0.618052 | 5_2:+46872984 | Msa0772510:CDS |
| GCTCTCTGAAATTGTAAAGG+TGG | 0.620182 | 5_2:-46870587 | None:intergenic |
| CGAGACTAATAACTCAATTG+CGG | 0.622926 | 5_2:+46873694 | Msa0772510:CDS |
| ATTGCTTGCAAAAGATGCAG+TGG | 0.625303 | 5_2:-46872200 | None:intergenic |
| AGTTGATATACTATCAACAT+TGG | 0.628260 | 5_2:+46873128 | Msa0772510:CDS |
| GCAGAAATTGAAACTCTCGC+AGG | 0.629007 | 5_2:+46873725 | Msa0772510:CDS |
| GCTGATGGAAAAGGGAAACA+AGG | 0.630536 | 5_2:+46870963 | Msa0772510:CDS |
| AGCCTTCTCCAAATAAGCAA+CGG | 0.630794 | 5_2:-46873600 | None:intergenic |
| GGTTGGTTGAGGCATTGTGA+CGG | 0.637516 | 5_2:-46870803 | None:intergenic |
| AACCACCGTCAACCCCGCCG+TGG | 0.638823 | 5_2:+46870873 | Msa0772510:CDS |
| TTGGCTACAGAGAACAGCAG+TGG | 0.641006 | 5_2:+46873970 | Msa0772510:CDS |
| TGAACCTGATCTCAAGAGCA+CGG | 0.642142 | 5_2:-46871029 | None:intergenic |
| TTCCTGAAAACAGTCAACCA+TGG | 0.642562 | 5_2:-46874257 | None:intergenic |
| GATACTGAAGAGTTGGCAGA+AGG | 0.643075 | 5_2:+46873012 | Msa0772510:CDS |
| ATCTCTCTCTGACTACCAGA+AGG | 0.643674 | 5_2:+46873279 | Msa0772510:CDS |
| AGCGAAGAGAAAAGTGATGG+TGG | 0.649637 | 5_2:+46874141 | Msa0772510:CDS |
| AAGCAGGAGGAGTCTCCACA+TGG | 0.654637 | 5_2:+46872130 | Msa0772510:CDS |
| GGACGTGACTTCAAACAACC+AGG | 0.655621 | 5_2:+46872231 | Msa0772510:CDS |
| ACTGTTATACAAGGCTCAGG+AGG | 0.655923 | 5_2:+46872078 | Msa0772510:CDS |
| ACAAGCGAAGAGAAAAGTGA+TGG | 0.658143 | 5_2:+46874138 | Msa0772510:CDS |
| TGCTGTTCCCAAGAAGCAGG+AGG | 0.664556 | 5_2:+46872117 | Msa0772510:CDS |
| TGAGATTCTAGCATCTGCCA+AGG | 0.664765 | 5_2:+46873900 | Msa0772510:CDS |
| TCAAAATAATAATCATGACA+AGG | 0.667146 | 5_2:-46873361 | None:intergenic |
| AGTTGCGGCGGATTCCACGG+CGG | 0.675466 | 5_2:-46870887 | None:intergenic |
| AGTGTCCGGTAAGAACGACC+AGG | 0.691630 | 5_2:+46872972 | Msa0772510:intron |
| GCGATCATCAAATGCCAGCG+TGG | 0.691972 | 5_2:+46874080 | Msa0772510:CDS |
| AAATTCTCCCAAAATCACCA+TGG | 0.699755 | 5_2:+46870750 | Msa0772510:exon |
| GTTCTCTGTAGCCAACTGTG+AGG | 0.704965 | 5_2:-46873962 | None:intergenic |
| TTGCGGCGGATTCCACGGCG+GGG | 0.708348 | 5_2:-46870885 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAAAATAAATGTAAGA+TGG | - | chr5_2:46873184-46873203 | None:intergenic | 10.0% |
| !!! | TTTTTTATTAACATTTAAAC+AGG | - | chr5_2:46873415-46873434 | None:intergenic | 10.0% |
| !!! | TAATATCTGAAATTTGAAAT+AGG | + | chr5_2:46871725-46871744 | Msa0772510:intron | 15.0% |
| !! | TTAGTTATCATAACAATATT+GGG | + | chr5_2:46871795-46871814 | Msa0772510:intron | 15.0% |
| !!! | TTTTTTTTTAACAACAATTC+AGG | - | chr5_2:46872737-46872756 | None:intergenic | 15.0% |
| !! | ATTAATAATTTCTCCAATTT+AGG | + | chr5_2:46873476-46873495 | Msa0772510:intron | 15.0% |
| !!! | TATGTTATTTTGATATAACA+TGG | + | chr5_2:46873813-46873832 | Msa0772510:intron | 15.0% |
| !! | GAAAAATGAAAGTGAAATTA+AGG | - | chr5_2:46870625-46870644 | None:intergenic | 20.0% |
| !!! | ATAGACATTTTATTCTCAAA+AGG | + | chr5_2:46871607-46871626 | Msa0772510:intron | 20.0% |
| !! | TATTAATTGATGAAACGAAA+TGG | + | chr5_2:46871689-46871708 | Msa0772510:intron | 20.0% |
| !! | CTTAGTTATCATAACAATAT+TGG | + | chr5_2:46871794-46871813 | Msa0772510:intron | 20.0% |
| !!! | CATATAATTGATTTGTACAT+GGG | - | chr5_2:46871916-46871935 | None:intergenic | 20.0% |
| !!! | ACATATAATTGATTTGTACA+TGG | - | chr5_2:46871917-46871936 | None:intergenic | 20.0% |
| !!! | ACTAAAATGAGAACATTTTA+CGG | + | chr5_2:46872308-46872327 | Msa0772510:intron | 20.0% |
| !! | TCAAAATAATAATCATGACA+AGG | - | chr5_2:46873364-46873383 | None:intergenic | 20.0% |
| !!! | ATTTCTTATTTCACAAGTTA+AGG | - | chr5_2:46873534-46873553 | None:intergenic | 20.0% |
| !!! | AAAAACCATGAGAATTTTTA+TGG | + | chr5_2:46874370-46874389 | Msa0772510:three_prime_UTR | 20.0% |
| !! | TAAATCCATAAAAATTCTCA+TGG | - | chr5_2:46874378-46874397 | None:intergenic | 20.0% |
| !!! | GGGTTTTAAGATTTTCTTTA+TGG | - | chr5_2:46870657-46870676 | None:intergenic | 25.0% |
| !! | TGATCTTTAGGTTAAATGAT+TGG | + | chr5_2:46871149-46871168 | Msa0772510:intron | 25.0% |
| !! | GATCTTTAGGTTAAATGATT+GGG | + | chr5_2:46871150-46871169 | Msa0772510:intron | 25.0% |
| !!! | TTTTTTTTGCATAAGCTATG+TGG | - | chr5_2:46871407-46871426 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+TGG | + | chr5_2:46871502-46871521 | Msa0772510:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACT+GGG | + | chr5_2:46871503-46871522 | Msa0772510:intron | 25.0% |
| !!! | AAATGTTCTCATTTTAGTGA+AGG | - | chr5_2:46872306-46872325 | None:intergenic | 25.0% |
| !!! | GATAGATAGAAAGTGTTTTA+TGG | + | chr5_2:46872416-46872435 | Msa0772510:intron | 25.0% |
| !!! | ATGGCAATGTTTTTAATGAA+AGG | + | chr5_2:46872435-46872454 | Msa0772510:intron | 25.0% |
| !!! | TGGCAATGTTTTTAATGAAA+GGG | + | chr5_2:46872436-46872455 | Msa0772510:intron | 25.0% |
| ! | TTCCTTATTCTCTATTTATG+TGG | + | chr5_2:46872472-46872491 | Msa0772510:intron | 25.0% |
| ! | TTCCACATAAATAGAGAATA+AGG | - | chr5_2:46872477-46872496 | None:intergenic | 25.0% |
| !!! | TTTTTTAACAACAATTCAGG+AGG | - | chr5_2:46872734-46872753 | None:intergenic | 25.0% |
| !!! | ACTATTTCTTTCACTTTTCT+TGG | + | chr5_2:46872865-46872884 | Msa0772510:intron | 25.0% |
| !! | AGTTGATATACTATCAACAT+TGG | + | chr5_2:46873128-46873147 | Msa0772510:CDS | 25.0% |
| !!! | ACAATTCAACTTTTAGAACT+GGG | - | chr5_2:46873224-46873243 | None:intergenic | 25.0% |
| !!! | AACAATTCAACTTTTAGAAC+TGG | - | chr5_2:46873225-46873244 | None:intergenic | 25.0% |
| ! | TCTAAAAGTTGAATTGTTTC+TGG | + | chr5_2:46873227-46873246 | Msa0772510:intron | 25.0% |
| !! | CTAAAAGTTGAATTGTTTCT+GGG | + | chr5_2:46873228-46873247 | Msa0772510:intron | 25.0% |
| ! | TTGATATAACATGGAATGTA+TGG | + | chr5_2:46873822-46873841 | Msa0772510:intron | 25.0% |
| !! | AAAATTCTCATGGTTTTTCT+AGG | - | chr5_2:46874368-46874387 | None:intergenic | 25.0% |
| ! | GAACATGCATATAATACTAA+CGG | - | chr5_2:46874409-46874428 | None:intergenic | 25.0% |
| ! | ATTATATGCATGTTCCTTTA+AGG | + | chr5_2:46874414-46874433 | Msa0772510:three_prime_UTR | 25.0% |
| ! | AAGAGGGAAAATTGAGATTT+TGG | - | chr5_2:46870711-46870730 | None:intergenic | 30.0% |
| TAAATGATTGGGAATTGAGT+TGG | + | chr5_2:46871161-46871180 | Msa0772510:intron | 30.0% | |
| GCTTAATTGTGAATGAAACT+GGG | - | chr5_2:46871249-46871268 | None:intergenic | 30.0% | |
| AGCTTAATTGTGAATGAAAC+TGG | - | chr5_2:46871250-46871269 | None:intergenic | 30.0% | |
| !! | CCAATGCTTTCGTATTTTAA+AGG | - | chr5_2:46871279-46871298 | None:intergenic | 30.0% |
| !! | CCTTTAAAATACGAAAGCAT+TGG | + | chr5_2:46871276-46871295 | Msa0772510:intron | 30.0% |
| ! | GTGGTTTTCATTAGTTATCT+TGG | - | chr5_2:46871388-46871407 | None:intergenic | 30.0% |
| !!! | AAGATGCTATTGTCTTGTTT+TGG | + | chr5_2:46871540-46871559 | Msa0772510:intron | 30.0% |
| CTATAATCAAGCAATTAAGC+AGG | - | chr5_2:46871591-46871610 | None:intergenic | 30.0% | |
| ! | TCTGAAATTTGAAATAGGTC+AGG | + | chr5_2:46871730-46871749 | Msa0772510:intron | 30.0% |
| ! | CTGAAATTTGAAATAGGTCA+GGG | + | chr5_2:46871731-46871750 | Msa0772510:intron | 30.0% |
| ! | TGAAATTTGAAATAGGTCAG+GGG | + | chr5_2:46871732-46871751 | Msa0772510:intron | 30.0% |
| AACAATATTGGGAAACTCTT+TGG | + | chr5_2:46871806-46871825 | Msa0772510:intron | 30.0% | |
| AACCATATTTGTAGTATGTG+TGG | - | chr5_2:46872054-46872073 | None:intergenic | 30.0% | |
| ! | TGAGAACATTTTACGGAATT+TGG | + | chr5_2:46872315-46872334 | Msa0772510:intron | 30.0% |
| TGTATGATATTAATCTGCGT+TGG | + | chr5_2:46872350-46872369 | Msa0772510:intron | 30.0% | |
| TATTTGACATGATGAGTAGA+AGG | - | chr5_2:46872393-46872412 | None:intergenic | 30.0% | |
| !! | AGTAAACAGTTGATAACTCA+AGG | - | chr5_2:46872508-46872527 | None:intergenic | 30.0% |
| AGGAAAAAATTCCCTGATTA+GGG | - | chr5_2:46872574-46872593 | None:intergenic | 30.0% | |
| AAGGAAAAAATTCCCTGATT+AGG | - | chr5_2:46872575-46872594 | None:intergenic | 30.0% | |
| ACGTAAAATGCTTTAACCAT+GGG | - | chr5_2:46872693-46872712 | None:intergenic | 30.0% | |
| TACGTAAAATGCTTTAACCA+TGG | - | chr5_2:46872694-46872713 | None:intergenic | 30.0% | |
| AAAAAAACCTCCTGAATTGT+TGG | + | chr5_2:46872754-46872773 | Msa0772510:intron | 30.0% | |
| AAAAAACCTCCTGAATTGTT+GGG | + | chr5_2:46872755-46872774 | Msa0772510:intron | 30.0% | |
| TTTGCTAGCTATCACAAATA+TGG | - | chr5_2:46872817-46872836 | None:intergenic | 30.0% | |
| TAATCACCTAAGTTGTAGTT+TGG | + | chr5_2:46872904-46872923 | Msa0772510:intron | 30.0% | |
| ! | TATCAACTTGTTCCATAGTA+TGG | - | chr5_2:46873116-46873135 | None:intergenic | 30.0% |
| !!! | CAATTCAACTTTTAGAACTG+GGG | - | chr5_2:46873223-46873242 | None:intergenic | 30.0% |
| AAAATGAAACAACATACGAG+TGG | + | chr5_2:46873431-46873450 | Msa0772510:intron | 30.0% | |
| TTTGTATGGAATGATGAGTT+TGG | + | chr5_2:46874194-46874213 | Msa0772510:three_prime_UTR | 30.0% | |
| ACAAATTCTTGCAAATTCCA+TGG | + | chr5_2:46874240-46874259 | Msa0772510:three_prime_UTR | 30.0% | |
| ACCTACAGTGATGAAAAATA+TGG | - | chr5_2:46874292-46874311 | None:intergenic | 30.0% | |
| ACCTTTACAATTTCAGAGAG+CGG | + | chr5_2:46870589-46870608 | Msa0772510:five_prime_UTR | 35.0% | |
| ! | AATTTGCTCAATGAGGGTTT+GGG | - | chr5_2:46870685-46870704 | None:intergenic | 35.0% |
| ! | TGGTTCAATTTGCTCAATGA+GGG | - | chr5_2:46870691-46870710 | None:intergenic | 35.0% |
| ! | TTGGTTCAATTTGCTCAATG+AGG | - | chr5_2:46870692-46870711 | None:intergenic | 35.0% |
| GAGAGAGAAAAATGAGAAGA+GGG | - | chr5_2:46870727-46870746 | None:intergenic | 35.0% | |
| AAATTCTCCCAAAATCACCA+TGG | + | chr5_2:46870750-46870769 | Msa0772510:exon | 35.0% | |
| ! | TCTTCAACCATGGTGATTTT+GGG | - | chr5_2:46870760-46870779 | None:intergenic | 35.0% |
| ! | TTCTTCAACCATGGTGATTT+TGG | - | chr5_2:46870761-46870780 | None:intergenic | 35.0% |
| ACCAAAATCATTCTCCTTCA+TGG | - | chr5_2:46870989-46871008 | None:intergenic | 35.0% | |
| ATGCGTTGAGTTTGATCTTT+AGG | + | chr5_2:46871137-46871156 | Msa0772510:intron | 35.0% | |
| ! | TGCATGTTCTCAGTGTTTTA+TGG | + | chr5_2:46871197-46871216 | Msa0772510:intron | 35.0% |
| TAGCATCTTACTATAGTGCA+TGG | - | chr5_2:46871529-46871548 | None:intergenic | 35.0% | |
| AAATAGGTCAGGGGTTATTA+TGG | + | chr5_2:46871741-46871760 | Msa0772510:intron | 35.0% | |
| AAAATGAAATCTCTGCTGGT+GGG | - | chr5_2:46871869-46871888 | None:intergenic | 35.0% | |
| AAAAATGAAATCTCTGCTGG+TGG | - | chr5_2:46871870-46871889 | None:intergenic | 35.0% | |
| GACAAAAATGAAATCTCTGC+TGG | - | chr5_2:46871873-46871892 | None:intergenic | 35.0% | |
| AACATTCAAACGTTCTTGTG+TGG | - | chr5_2:46871940-46871959 | None:intergenic | 35.0% | |
| GTCCACACATACTACAAATA+TGG | + | chr5_2:46872049-46872068 | Msa0772510:CDS | 35.0% | |
| ! | TTTTGCAAGCAATATTGAGC+AGG | + | chr5_2:46872210-46872229 | Msa0772510:CDS | 35.0% |
| CAACTGTTTACTCAAGACAT+AGG | + | chr5_2:46872516-46872535 | Msa0772510:intron | 35.0% | |
| GTTTACTCAAGACATAGGAT+AGG | + | chr5_2:46872521-46872540 | Msa0772510:intron | 35.0% | |
| TTGAAATGTGAAACAGTGTC+CGG | + | chr5_2:46872958-46872977 | Msa0772510:intron | 35.0% | |
| !! | GACAGATTGCTTTTCAACAA+TGG | - | chr5_2:46873094-46873113 | None:intergenic | 35.0% |
| AAAGCAATCTGTCCATACTA+TGG | + | chr5_2:46873101-46873120 | Msa0772510:CDS | 35.0% | |
| AGAGATGTTTCAAAATCCTC+TGG | - | chr5_2:46873265-46873284 | None:intergenic | 35.0% | |
| ! | TCAGCAATGTTTCTATCATC+TGG | - | chr5_2:46873334-46873353 | None:intergenic | 35.0% |
| CACAATTGGTCATCCTAAAT+TGG | - | chr5_2:46873492-46873511 | None:intergenic | 35.0% | |
| TTTCCGTATATGCTTGTGTT+TGG | + | chr5_2:46873553-46873572 | Msa0772510:CDS | 35.0% | |
| ! | CGCAATTGAGTTATTAGTCT+CGG | - | chr5_2:46873696-46873715 | None:intergenic | 35.0% |
| CGAGACTAATAACTCAATTG+CGG | + | chr5_2:46873694-46873713 | Msa0772510:CDS | 35.0% | |
| !! | TCTCAGCGAGAATTGATTTT+GGG | - | chr5_2:46873885-46873904 | None:intergenic | 35.0% |
| !! | ATCTCAGCGAGAATTGATTT+TGG | - | chr5_2:46873886-46873905 | None:intergenic | 35.0% |
| TTTGGCGACTCTTTGAATTA+TGG | + | chr5_2:46874212-46874231 | Msa0772510:three_prime_UTR | 35.0% | |
| CGACTCTTTGAATTATGGAT+AGG | + | chr5_2:46874217-46874236 | Msa0772510:three_prime_UTR | 35.0% | |
| ! | GCCATATTTTTCATCACTGT+AGG | + | chr5_2:46874288-46874307 | Msa0772510:three_prime_UTR | 35.0% |
| TGTAGGTTTATGTGTAGCTA+AGG | + | chr5_2:46874305-46874324 | Msa0772510:three_prime_UTR | 35.0% | |
| !! | ATGCATGTTCCTTTAAGGTT+TGG | + | chr5_2:46874419-46874438 | Msa0772510:three_prime_UTR | 35.0% |
| AATTCAGCACCAAACCTTAA+AGG | - | chr5_2:46874431-46874450 | None:intergenic | 35.0% | |
| !! | TTAAGGTTTGGTGCTGAATT+AGG | + | chr5_2:46874431-46874450 | Msa0772510:three_prime_UTR | 35.0% |
| !! | GCTCTCTGAAATTGTAAAGG+TGG | - | chr5_2:46870590-46870609 | None:intergenic | 40.0% |
| !! | ACCGCTCTCTGAAATTGTAA+AGG | - | chr5_2:46870593-46870612 | None:intergenic | 40.0% |
| !! | TCAATGAGGGTTTGGGTTTT+GGG | - | chr5_2:46870678-46870697 | None:intergenic | 40.0% |
| ! | CAATTTGCTCAATGAGGGTT+TGG | - | chr5_2:46870686-46870705 | None:intergenic | 40.0% |
| CGAGAGAGAAAAATGAGAAG+AGG | - | chr5_2:46870728-46870747 | None:intergenic | 40.0% | |
| AGTTGGAGTTTCTTCAACCA+TGG | - | chr5_2:46870770-46870789 | None:intergenic | 40.0% | |
| ACCCTAAACCACGACAAAAA+CGG | + | chr5_2:46870850-46870869 | Msa0772510:CDS | 40.0% | |
| !! | TCCGTTTTTGTCGTGGTTTA+GGG | - | chr5_2:46870854-46870873 | None:intergenic | 40.0% |
| !! | TTCCGTTTTTGTCGTGGTTT+AGG | - | chr5_2:46870855-46870874 | None:intergenic | 40.0% |
| ! | GCCATGAAGGAGAATGATTT+TGG | + | chr5_2:46870985-46871004 | Msa0772510:CDS | 40.0% |
| TTGAGATCAGGTTCAATTCG+TGG | + | chr5_2:46871037-46871056 | Msa0772510:intron | 40.0% | |
| !!! | GTTTTGGCTAATTCTGTGCT+AGG | + | chr5_2:46871556-46871575 | Msa0772510:intron | 40.0% |
| TGTCAACCTGATGCTCTTAT+AGG | + | chr5_2:46871889-46871908 | Msa0772510:intron | 40.0% | |
| ATCAACAGAGTTGCCCATTA+TGG | + | chr5_2:46872007-46872026 | Msa0772510:intron | 40.0% | |
| TGGTTGTGCACTGTTATACA+AGG | + | chr5_2:46872069-46872088 | Msa0772510:CDS | 40.0% | |
| ATTGCTTGCAAAAGATGCAG+TGG | - | chr5_2:46872203-46872222 | None:intergenic | 40.0% | |
| ! | ATGTTTTCTGTGCCCTAATC+AGG | + | chr5_2:46872559-46872578 | Msa0772510:intron | 40.0% |
| ! | TGTTTTCTGTGCCCTAATCA+GGG | + | chr5_2:46872560-46872579 | Msa0772510:intron | 40.0% |
| ATGCACACGTATCAAAGAGA+AGG | - | chr5_2:46872594-46872613 | None:intergenic | 40.0% | |
| CTTTGATACGTGTGCATGAA+TGG | + | chr5_2:46872597-46872616 | Msa0772510:intron | 40.0% | |
| TGCATGAATGGCACTTATTG+TGG | + | chr5_2:46872609-46872628 | Msa0772510:intron | 40.0% | |
| GCATGAATGGCACTTATTGT+GGG | + | chr5_2:46872610-46872629 | Msa0772510:intron | 40.0% | |
| CATGAATGGCACTTATTGTG+GGG | + | chr5_2:46872611-46872630 | Msa0772510:intron | 40.0% | |
| TTCTCGCCAAACTACAACTT+AGG | - | chr5_2:46872913-46872932 | None:intergenic | 40.0% | |
| GGATAGTGATACTGAAGAGT+TGG | + | chr5_2:46873005-46873024 | Msa0772510:CDS | 40.0% | |
| CCTCCAAACACAAGCATATA+CGG | - | chr5_2:46873559-46873578 | None:intergenic | 40.0% | |
| AGCCTTCTCCAAATAAGCAA+CGG | - | chr5_2:46873603-46873622 | None:intergenic | 40.0% | |
| GAAGGCTACATCTGTTTGTA+AGG | + | chr5_2:46873616-46873635 | Msa0772510:CDS | 40.0% | |
| CTCAAGTGAACTGGAAAAGA+AGG | + | chr5_2:46873751-46873770 | Msa0772510:CDS | 40.0% | |
| ! | TCACACATCTTGGTGTAGTA+GGG | + | chr5_2:46874046-46874065 | Msa0772510:CDS | 40.0% |
| !! | TCTTCGCTTGTTTCTAATGC+TGG | - | chr5_2:46874129-46874148 | None:intergenic | 40.0% |
| ACAAGCGAAGAGAAAAGTGA+TGG | + | chr5_2:46874138-46874157 | Msa0772510:CDS | 40.0% | |
| TGGCAACGCATGATTTATAC+TGG | + | chr5_2:46874161-46874180 | Msa0772510:exon | 40.0% | |
| ! | CTGGTCTCAGTTCTTTTGTA+TGG | + | chr5_2:46874180-46874199 | Msa0772510:three_prime_UTR | 40.0% |
| ! | TTCCATGGTTGACTGTTTTC+AGG | + | chr5_2:46874255-46874274 | Msa0772510:three_prime_UTR | 40.0% |
| TTCCTGAAAACAGTCAACCA+TGG | - | chr5_2:46874260-46874279 | None:intergenic | 40.0% | |
| !! | CAATGAGGGTTTGGGTTTTG+GGG | - | chr5_2:46870677-46870696 | None:intergenic | 45.0% |
| !! | CTCAATGAGGGTTTGGGTTT+TGG | - | chr5_2:46870679-46870698 | None:intergenic | 45.0% |
| GCTGATGAGCTGATGGAAAA+GGG | + | chr5_2:46870955-46870974 | Msa0772510:CDS | 45.0% | |
| GCTGATGGAAAAGGGAAACA+AGG | + | chr5_2:46870963-46870982 | Msa0772510:CDS | 45.0% | |
| AAAGGGAAACAAGGCCATGA+AGG | + | chr5_2:46870972-46870991 | Msa0772510:CDS | 45.0% | |
| TGAACCTGATCTCAAGAGCA+CGG | - | chr5_2:46871032-46871051 | None:intergenic | 45.0% | |
| !!! | CCTACGTTTTGTTTTGACGC+GGG | - | chr5_2:46871304-46871323 | None:intergenic | 45.0% |
| !!! | CCCTACGTTTTGTTTTGACG+CGG | - | chr5_2:46871305-46871324 | None:intergenic | 45.0% |
| CCGCGTCAAAACAAAACGTA+GGG | + | chr5_2:46871302-46871321 | Msa0772510:intron | 45.0% | |
| AACAAAACGTAGGGCCTGTT+TGG | + | chr5_2:46871311-46871330 | Msa0772510:intron | 45.0% | |
| TAGGGCCTGTTTGGATTGTT+TGG | + | chr5_2:46871320-46871339 | Msa0772510:intron | 45.0% | |
| AGGGCCTGTTTGGATTGTTT+GGG | + | chr5_2:46871321-46871340 | Msa0772510:intron | 45.0% | |
| GTCTCCCAAACAATCCAAAC+AGG | - | chr5_2:46871328-46871347 | None:intergenic | 45.0% | |
| GGCTAATTCTGTGCTAGGAA+TGG | + | chr5_2:46871561-46871580 | Msa0772510:intron | 45.0% | |
| AGGTCAGGGGTTATTATGGA+TGG | + | chr5_2:46871745-46871764 | Msa0772510:intron | 45.0% | |
| !! | ATGGGTCCTATAAGAGCATC+AGG | - | chr5_2:46871898-46871917 | None:intergenic | 45.0% |
| GGGAGCAAGTTCACCATAAT+GGG | - | chr5_2:46872023-46872042 | None:intergenic | 45.0% | |
| TAGTATGTGTGGACACACTC+GGG | - | chr5_2:46872043-46872062 | None:intergenic | 45.0% | |
| GTAGTATGTGTGGACACACT+CGG | - | chr5_2:46872044-46872063 | None:intergenic | 45.0% | |
| TGCACTGTTATACAAGGCTC+AGG | + | chr5_2:46872075-46872094 | Msa0772510:CDS | 45.0% | |
| ACTGTTATACAAGGCTCAGG+AGG | + | chr5_2:46872078-46872097 | Msa0772510:CDS | 45.0% | |
| CTTCACAGGTCCATCTTTGT+CGG | - | chr5_2:46872158-46872177 | None:intergenic | 45.0% | |
| GACAAAGATGGACCTGTGAA+GGG | + | chr5_2:46872157-46872176 | Msa0772510:CDS | 45.0% | |
| AAACAACCAGGAGTCAGAAG+TGG | + | chr5_2:46872243-46872262 | Msa0772510:CDS | 45.0% | |
| CATTATCCACTTCTGACTCC+TGG | - | chr5_2:46872252-46872271 | None:intergenic | 45.0% | |
| CAGGAGTCAGAAGTGGATAA+TGG | + | chr5_2:46872250-46872269 | Msa0772510:CDS | 45.0% | |
| TCTACTCCCAACAATTCAGG+AGG | - | chr5_2:46872764-46872783 | None:intergenic | 45.0% | |
| GTGTCTACTCCCAACAATTC+AGG | - | chr5_2:46872767-46872786 | None:intergenic | 45.0% | |
| ATCTTCCTGGTCGTTCTTAC+CGG | - | chr5_2:46872980-46872999 | None:intergenic | 45.0% | |
| CACTATCCTCATCATCTTCC+TGG | - | chr5_2:46872993-46873012 | None:intergenic | 45.0% | |
| GATACTGAAGAGTTGGCAGA+AGG | + | chr5_2:46873012-46873031 | Msa0772510:CDS | 45.0% | |
| ! | GCATTTTCCATGCCAAATCC+AGG | - | chr5_2:46873056-46873075 | None:intergenic | 45.0% |
| AACATTGGCAGATGTTGCTC+TGG | + | chr5_2:46873143-46873162 | Msa0772510:CDS | 45.0% | |
| AGAACTGGGGTAGAGAGAAT+TGG | - | chr5_2:46873210-46873229 | None:intergenic | 45.0% | |
| !!! | CTGGGATCTGTTTTTTCCAG+AGG | + | chr5_2:46873246-46873265 | Msa0772510:intron | 45.0% |
| ATCTCTCTCTGACTACCAGA+AGG | + | chr5_2:46873279-46873298 | Msa0772510:CDS | 45.0% | |
| TCTATCCATCCTAGAACAGC+TGG | + | chr5_2:46873303-46873322 | Msa0772510:CDS | 45.0% | |
| !! | TTCAACCAGCTGTTCTAGGA+TGG | - | chr5_2:46873311-46873330 | None:intergenic | 45.0% |
| ! | TAGCAGTGGAAGAGCACAAT+TGG | - | chr5_2:46873506-46873525 | None:intergenic | 45.0% |
| AAGTTAAGGCTGTCTAGCAG+TGG | - | chr5_2:46873520-46873539 | None:intergenic | 45.0% | |
| CCGTATATGCTTGTGTTTGG+AGG | + | chr5_2:46873556-46873575 | Msa0772510:CDS | 45.0% | |
| ! | GGAGGTTAGTTCAAAACCTG+AGG | + | chr5_2:46873574-46873593 | Msa0772510:CDS | 45.0% |
| AAATAAGCAACGGCTTCCTC+AGG | - | chr5_2:46873593-46873612 | None:intergenic | 45.0% | |
| TGAGGAAGCCGTTGCTTATT+TGG | + | chr5_2:46873592-46873611 | Msa0772510:CDS | 45.0% | |
| AGCCGTTGCTTATTTGGAGA+AGG | + | chr5_2:46873598-46873617 | Msa0772510:CDS | 45.0% | |
| GCAGAAATTGAAACTCTCGC+AGG | + | chr5_2:46873725-46873744 | Msa0772510:CDS | 45.0% | |
| TGAGATTCTAGCATCTGCCA+AGG | + | chr5_2:46873900-46873919 | Msa0772510:CDS | 45.0% | |
| ATTGGTGTGAGCGGTTGAAA+TGG | - | chr5_2:46874013-46874032 | None:intergenic | 45.0% | |
| ATTTCAACCGCTCACACCAA+TGG | + | chr5_2:46874012-46874031 | Msa0772510:CDS | 45.0% | |
| ! | GTCACACATCTTGGTGTAGT+AGG | + | chr5_2:46874045-46874064 | Msa0772510:CDS | 45.0% |
| AGCGAAGAGAAAAGTGATGG+TGG | + | chr5_2:46874141-46874160 | Msa0772510:CDS | 45.0% | |
| ACGGAAGTCTCAGATGCAGT+TGG | - | chr5_2:46870787-46870806 | None:intergenic | 50.0% | |
| !! | GGTTGGTTGAGGCATTGTGA+CGG | - | chr5_2:46870806-46870825 | None:intergenic | 50.0% |
| GGCTGATGAGCTGATGGAAA+AGG | + | chr5_2:46870954-46870973 | Msa0772510:CDS | 50.0% | |
| ATAGCCGTGCTCTTGAGATC+AGG | + | chr5_2:46871025-46871044 | Msa0772510:CDS | 50.0% | |
| CCCGCGTCAAAACAAAACGT+AGG | + | chr5_2:46871301-46871320 | Msa0772510:intron | 50.0% | |
| CTATAGTGCATGGCCCAGTT+TGG | - | chr5_2:46871519-46871538 | None:intergenic | 50.0% | |
| CGGGAGCAAGTTCACCATAA+TGG | - | chr5_2:46872024-46872043 | None:intergenic | 50.0% | |
| TTCTTGGGAACAGCACCCAA+AGG | - | chr5_2:46872112-46872131 | None:intergenic | 50.0% | |
| CGACAAAGATGGACCTGTGA+AGG | + | chr5_2:46872156-46872175 | Msa0772510:CDS | 50.0% | |
| GCATTCATAGCACCCTTCAC+AGG | - | chr5_2:46872172-46872191 | None:intergenic | 50.0% | |
| GGACGTGACTTCAAACAACC+AGG | + | chr5_2:46872231-46872250 | Msa0772510:CDS | 50.0% | |
| ACTTGAGTCTGTGACGTGTG+CGG | + | chr5_2:46872643-46872662 | Msa0772510:intron | 50.0% | |
| ! | CATGGGCTTTTTGTACCCCA+CGG | - | chr5_2:46872676-46872695 | None:intergenic | 50.0% |
| GAACGACCAGGAAGATGATG+AGG | + | chr5_2:46872984-46873003 | Msa0772510:CDS | 50.0% | |
| TGATGAAGACGAGTCTGACC+TGG | + | chr5_2:46873035-46873054 | Msa0772510:CDS | 50.0% | |
| AGACGAGTCTGACCTGGATT+TGG | + | chr5_2:46873041-46873060 | Msa0772510:CDS | 50.0% | |
| AGTCTGACCTGGATTTGGCA+TGG | + | chr5_2:46873046-46873065 | Msa0772510:CDS | 50.0% | |
| !! | GCAGATGTTGCTCTGGAAAG+AGG | + | chr5_2:46873150-46873169 | Msa0772510:CDS | 50.0% |
| CTAGGATGGATAGAGCCTTC+TGG | - | chr5_2:46873297-46873316 | None:intergenic | 50.0% | |
| CTGGTTCAACCAGCTGTTCT+AGG | - | chr5_2:46873315-46873334 | None:intergenic | 50.0% | |
| ATTCTAGCATCTGCCAAGGC+AGG | + | chr5_2:46873904-46873923 | Msa0772510:CDS | 50.0% | |
| GAGCTCACTCTTGCTAGAGA+TGG | - | chr5_2:46873943-46873962 | None:intergenic | 50.0% | |
| AAGAGTGAGCTCCTCACAGT+TGG | + | chr5_2:46873951-46873970 | Msa0772510:CDS | 50.0% | |
| GTTCTCTGTAGCCAACTGTG+AGG | - | chr5_2:46873965-46873984 | None:intergenic | 50.0% | |
| TTGGCTACAGAGAACAGCAG+TGG | + | chr5_2:46873970-46873989 | Msa0772510:CDS | 50.0% | |
| GTGTGAGCGGTTGAAATGGT+TGG | - | chr5_2:46874009-46874028 | None:intergenic | 50.0% | |
| AGCAGATCCATTGGTGTGAG+CGG | - | chr5_2:46874022-46874041 | None:intergenic | 50.0% | |
| TGTGACTCCAGCAGATCCAT+TGG | - | chr5_2:46874031-46874050 | None:intergenic | 50.0% | |
| TCTGCTGGAGTCACACATCT+TGG | + | chr5_2:46874036-46874055 | Msa0772510:CDS | 50.0% | |
| ! | CATCTTGGTGTAGTAGGGAG+AGG | + | chr5_2:46874051-46874070 | Msa0772510:CDS | 50.0% |
| ! | GTGACAGGTTCGGTTGGTTG+AGG | - | chr5_2:46870817-46870836 | None:intergenic | 55.0% |
| ! | GTGGTTTAGGGTTCCGTCGA+CGG | - | chr5_2:46870842-46870861 | None:intergenic | 55.0% |
| !! | CGGTGGTTCCGTTTTTGTCG+TGG | - | chr5_2:46870861-46870880 | None:intergenic | 55.0% |
| ! | AGAAGTTGCGGCGGATTCCA+CGG | - | chr5_2:46870893-46870912 | None:intergenic | 55.0% |
| CGGTCAGAAGTCTCTGGACA+TGG | + | chr5_2:46870933-46870952 | Msa0772510:CDS | 55.0% | |
| GGACATGGCTGATGAGCTGA+TGG | + | chr5_2:46870948-46870967 | Msa0772510:CDS | 55.0% | |
| TCAGGAGGAAGCCGATCCTT+TGG | + | chr5_2:46872093-46872112 | Msa0772510:CDS | 55.0% | |
| CAGGAGGAAGCCGATCCTTT+GGG | + | chr5_2:46872094-46872113 | Msa0772510:CDS | 55.0% | |
| GGGAACAGCACCCAAAGGAT+CGG | - | chr5_2:46872107-46872126 | None:intergenic | 55.0% | |
| TGCTGTTCCCAAGAAGCAGG+AGG | + | chr5_2:46872117-46872136 | Msa0772510:CDS | 55.0% | |
| GGAGACTCCTCCTGCTTCTT+GGG | - | chr5_2:46872127-46872146 | None:intergenic | 55.0% | |
| TGGAGACTCCTCCTGCTTCT+TGG | - | chr5_2:46872128-46872147 | None:intergenic | 55.0% | |
| AAGCAGGAGGAGTCTCCACA+TGG | + | chr5_2:46872130-46872149 | Msa0772510:CDS | 55.0% | |
| CGTGGGGTACAAAAAGCCCA+TGG | + | chr5_2:46872674-46872693 | Msa0772510:intron | 55.0% | |
| AGTGTCCGGTAAGAACGACC+AGG | + | chr5_2:46872972-46872991 | Msa0772510:intron | 55.0% | |
| CGCAGGTCTCTCAAGTGAAC+TGG | + | chr5_2:46873742-46873761 | Msa0772510:CDS | 55.0% | |
| TTCCTTTCCACTGCCTGCCT+TGG | - | chr5_2:46873920-46873939 | None:intergenic | 55.0% | |
| GCTCACACCAATGGATCTGC+TGG | + | chr5_2:46874021-46874040 | Msa0772510:CDS | 55.0% | |
| GCGATCATCAAATGCCAGCG+TGG | + | chr5_2:46874080-46874099 | Msa0772510:CDS | 55.0% | |
| AATGCTTGCTTCTGCCACGC+TGG | - | chr5_2:46874097-46874116 | None:intergenic | 55.0% | |
| ! | ACGGCTGTGACAGGTTCGGT+TGG | - | chr5_2:46870823-46870842 | None:intergenic | 60.0% |
| GTCGACGGCTGTGACAGGTT+CGG | - | chr5_2:46870827-46870846 | None:intergenic | 60.0% | |
| GAACCTGTCACAGCCGTCGA+CGG | + | chr5_2:46870826-46870845 | Msa0772510:CDS | 60.0% | |
| ATCCGCCGCAACTTCTGCTC+CGG | + | chr5_2:46870897-46870916 | Msa0772510:CDS | 60.0% | |
| AGACTTCTGACCGTCGCTGC+TGG | - | chr5_2:46870926-46870945 | None:intergenic | 60.0% | |
| CAGCGACGGTCAGAAGTCTC+TGG | + | chr5_2:46870927-46870946 | Msa0772510:CDS | 60.0% | |
| !! | GGGTGCTGTTCCCAAGAAGC+AGG | + | chr5_2:46872114-46872133 | Msa0772510:CDS | 60.0% |
| CCATCTTTGTCGGCGCCATG+TGG | - | chr5_2:46872148-46872167 | None:intergenic | 60.0% | |
| !! | CCACATGGCGCCGACAAAGA+TGG | + | chr5_2:46872145-46872164 | Msa0772510:CDS | 60.0% |
| ! | ACGTGTGCGGACTAAGTCCG+TGG | + | chr5_2:46872656-46872675 | Msa0772510:intron | 60.0% |
| ! | CGTGTGCGGACTAAGTCCGT+GGG | + | chr5_2:46872657-46872676 | Msa0772510:intron | 60.0% |
| ! | GTGTGCGGACTAAGTCCGTG+GGG | + | chr5_2:46872658-46872677 | Msa0772510:intron | 60.0% |
| TGCCAAGGCAGGCAGTGGAA+AGG | + | chr5_2:46873915-46873934 | Msa0772510:CDS | 60.0% | |
| GTTCCGTCGACGGCTGTGAC+AGG | - | chr5_2:46870832-46870851 | None:intergenic | 65.0% | |
| GGATTCCACGGCGGGGTTGA+CGG | - | chr5_2:46870881-46870900 | None:intergenic | 65.0% | |
| ! | AGTTGCGGCGGATTCCACGG+CGG | - | chr5_2:46870890-46870909 | None:intergenic | 65.0% |
| GGACGCCGGAGCAGAAGTTG+CGG | - | chr5_2:46870905-46870924 | None:intergenic | 65.0% | |
| GCATCTGCCAAGGCAGGCAG+TGG | + | chr5_2:46873910-46873929 | Msa0772510:CDS | 65.0% | |
| AACCACCGTCAACCCCGCCG+TGG | + | chr5_2:46870873-46870892 | Msa0772510:CDS | 70.0% | |
| TTCCACGGCGGGGTTGACGG+TGG | - | chr5_2:46870878-46870897 | None:intergenic | 70.0% | |
| ! | TTGCGGCGGATTCCACGGCG+GGG | - | chr5_2:46870888-46870907 | None:intergenic | 70.0% |
| ! | GTTGCGGCGGATTCCACGGC+GGG | - | chr5_2:46870889-46870908 | None:intergenic | 70.0% |
| CGCCGGAGCAGAAGTTGCGG+CGG | - | chr5_2:46870902-46870921 | None:intergenic | 70.0% | |
| TGACCGTCGCTGCTGGACGC+CGG | - | chr5_2:46870919-46870938 | None:intergenic | 70.0% | |
| GCTCCGGCGTCCAGCAGCGA+CGG | + | chr5_2:46870913-46870932 | Msa0772510:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 46870580 | 46874481 | 46870580 | ID=Msa0772510;Name=Msa0772510 |
| chr5_2 | mRNA | 46870580 | 46874481 | 46870580 | ID=Msa0772510-mRNA-1;Parent=Msa0772510;Name=Msa0772510-mRNA-1;_AED=0.18;_eAED=0.18;_QI=189|0.8|0.66|1|1|1|6|308|472 |
| chr5_2 | exon | 46870580 | 46871046 | 46870580 | ID=Msa0772510-mRNA-1:exon:14010;Parent=Msa0772510-mRNA-1 |
| chr5_2 | exon | 46872015 | 46872271 | 46872015 | ID=Msa0772510-mRNA-1:exon:14011;Parent=Msa0772510-mRNA-1 |
| chr5_2 | exon | 46872974 | 46873171 | 46872974 | ID=Msa0772510-mRNA-1:exon:14012;Parent=Msa0772510-mRNA-1 |
| chr5_2 | exon | 46873266 | 46873384 | 46873266 | ID=Msa0772510-mRNA-1:exon:14013;Parent=Msa0772510-mRNA-1 |
| chr5_2 | exon | 46873527 | 46873772 | 46873527 | ID=Msa0772510-mRNA-1:exon:14014;Parent=Msa0772510-mRNA-1 |
| chr5_2 | exon | 46873853 | 46874481 | 46873853 | ID=Msa0772510-mRNA-1:exon:14015;Parent=Msa0772510-mRNA-1 |
| chr5_2 | five_prime_UTR | 46870580 | 46870768 | 46870580 | ID=Msa0772510-mRNA-1:five_prime_utr;Parent=Msa0772510-mRNA-1 |
| chr5_2 | CDS | 46870769 | 46871046 | 46870769 | ID=Msa0772510-mRNA-1:cds;Parent=Msa0772510-mRNA-1 |
| chr5_2 | CDS | 46872015 | 46872271 | 46872015 | ID=Msa0772510-mRNA-1:cds;Parent=Msa0772510-mRNA-1 |
| chr5_2 | CDS | 46872974 | 46873171 | 46872974 | ID=Msa0772510-mRNA-1:cds;Parent=Msa0772510-mRNA-1 |
| chr5_2 | CDS | 46873266 | 46873384 | 46873266 | ID=Msa0772510-mRNA-1:cds;Parent=Msa0772510-mRNA-1 |
| chr5_2 | CDS | 46873527 | 46873772 | 46873527 | ID=Msa0772510-mRNA-1:cds;Parent=Msa0772510-mRNA-1 |
| chr5_2 | CDS | 46873853 | 46874173 | 46873853 | ID=Msa0772510-mRNA-1:cds;Parent=Msa0772510-mRNA-1 |
| chr5_2 | three_prime_UTR | 46874174 | 46874481 | 46874174 | ID=Msa0772510-mRNA-1:three_prime_utr;Parent=Msa0772510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
