AlfalfaGEDB | Msa0798480

M. sativa cultivar zhongmu-4 / Msa0798480

KEGG: K11372
GO: GO:0000082 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0001701 GO:0001824 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006335 GO:0006336 GO:0006338 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034723 GO:0034724 GO:0034728 GO:0042393 GO:0043009 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043486 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0044877 GO:0046483 GO:0048856 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:1901360 GO:1901576 GO:1903047
PFAM: PF00515.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0798480	XP_024639943.1	91.737	472	22	1	1	472	1	455	0.0	798

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0798480	G7K9G9	91.737	472	22	1	1	472	1	455	0.0	798

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030200	Msa0798480	0.817390	3.380358e-52	-8.615850e-47
Msa0139350	Msa0798480	0.819442	1.158702e-52	-8.615850e-47
Msa0170200	Msa0798480	0.800215	1.599649e-48	-8.615850e-47
Msa0772510	Msa0798480	0.946008	1.044589e-104	-8.615850e-47
Msa0798480	Msa1174470	0.805774	1.134736e-49	-8.615850e-47
Msa0798480	Msa1266990	0.806600	7.601879e-50	-8.615850e-47
Msa0798480	Msa1356400	0.809598	1.748406e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0798480	MtrunA17_Chr5g0403081	91.737	472	22	1	1	472	1	455	0.0	798

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0798480	AT4G37210.1	47.982	446	169	11	57	469	74	489	5.80e-114	345
Msa0798480	AT4G37210.2	47.734	331	123	5	57	366	74	375	2.96e-85	267

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Find 146 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACCAGGAGTCAGAAG+TGG	0.594428	5_3:+11213867	Msa0798480:CDS
AAAGCAATCTGTCCATACTA+TGG	0.392176	5_3:+11214723	Msa0798480:CDS
AAAGGGAAACAAGGCCATGA+AGG	0.561352	5_3:+11212597	Msa0798480:CDS
AAATAAGCAACGGCTTCCTC+AGG	0.479407	5_3:-11215212	None:intergenic
AAATTCTCCCAAAATCACCA+TGG	0.699755	5_3:+11212375	Msa0798480:exon
AACATTGGCAGATGTTGCTC+TGG	0.486208	5_3:+11214765	Msa0798480:CDS
AACCACCGTCAACCCCGCCG+TGG	0.638823	5_3:+11212498	Msa0798480:CDS
AACCATATTTGTAGTATGTG+TGG	0.571397	5_3:-11213675	None:intergenic
AAGAGGGAAAATTGAGATTT+TGG	0.150990	5_3:-11212333	None:intergenic
AAGAGTGAGCTCCTCACAGT+TGG	0.588916	5_3:+11215573	Msa0798480:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCTTAATTGTGAATGAAACT+GGG	-	chr5_3:11212874-11212893	None:intergenic	30.0%
AGCTTAATTGTGAATGAAAC+TGG	-	chr5_3:11212875-11212894	None:intergenic	30.0%
TAACATCTTACTATAGTGCA+TGG	-	chr5_3:11213153-11213172	None:intergenic	30.0%
CTATAATCAAGCAATTAAGC+AGG	-	chr5_3:11213215-11213234	None:intergenic	30.0%
AACAATATTGGGAAACTCTT+TGG	+	chr5_3:11213430-11213449	Msa0798480:intron	30.0%
AACCATATTTGTAGTATGTG+TGG	-	chr5_3:11213678-11213697	None:intergenic	30.0%
TGTATGATATTAATCTGCGT+TGG	+	chr5_3:11213974-11213993	Msa0798480:intron	30.0%
TATTTGACATGATGAGTAGA+AGG	-	chr5_3:11214017-11214036	None:intergenic	30.0%
AGGAAAAAATTCCCTGATTA+GGG	-	chr5_3:11214194-11214213	None:intergenic	30.0%
AAGGAAAAAATTCCCTGATT+AGG	-	chr5_3:11214195-11214214	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	11212205	11216104	11212205	ID=Msa0798480;Name=Msa0798480
chr5_3	mRNA	11212205	11216104	11212205	ID=Msa0798480-mRNA-1;Parent=Msa0798480;Name=Msa0798480-mRNA-1;_AED=0.11;_eAED=0.11;_QI=189\|0.8\|0.66\|1\|1\|1\|6\|309\|472
chr5_3	exon	11212205	11212671	11212205	ID=Msa0798480-mRNA-1:exon:4647;Parent=Msa0798480-mRNA-1
chr5_3	exon	11213639	11213895	11213639	ID=Msa0798480-mRNA-1:exon:4648;Parent=Msa0798480-mRNA-1
chr5_3	exon	11214596	11214793	11214596	ID=Msa0798480-mRNA-1:exon:4649;Parent=Msa0798480-mRNA-1
chr5_3	exon	11214888	11215006	11214888	ID=Msa0798480-mRNA-1:exon:4650;Parent=Msa0798480-mRNA-1
chr5_3	exon	11215149	11215394	11215149	ID=Msa0798480-mRNA-1:exon:4651;Parent=Msa0798480-mRNA-1
chr5_3	exon	11215475	11216104	11215475	ID=Msa0798480-mRNA-1:exon:4652;Parent=Msa0798480-mRNA-1
chr5_3	five_prime_UTR	11212205	11212393	11212205	ID=Msa0798480-mRNA-1:five_prime_utr;Parent=Msa0798480-mRNA-1
chr5_3	CDS	11212394	11212671	11212394	ID=Msa0798480-mRNA-1:cds;Parent=Msa0798480-mRNA-1
chr5_3	CDS	11213639	11213895	11213639	ID=Msa0798480-mRNA-1:cds;Parent=Msa0798480-mRNA-1
chr5_3	CDS	11214596	11214793	11214596	ID=Msa0798480-mRNA-1:cds;Parent=Msa0798480-mRNA-1
chr5_3	CDS	11214888	11215006	11214888	ID=Msa0798480-mRNA-1:cds;Parent=Msa0798480-mRNA-1
chr5_3	CDS	11215149	11215394	11215149	ID=Msa0798480-mRNA-1:cds;Parent=Msa0798480-mRNA-1
chr5_3	CDS	11215475	11215795	11215475	ID=Msa0798480-mRNA-1:cds;Parent=Msa0798480-mRNA-1
chr5_3	three_prime_UTR	11215796	11216104	11215796	ID=Msa0798480-mRNA-1:three_prime_utr;Parent=Msa0798480-mRNA-1

Gene Sequence

>Msa0798480

ATGGTTGAAGAAACTCCAACTGCATCTGAGACTTCCGTCACAATGCCTCAACCAACCGAACCTGTCACAGCCGTCGACGGAACCCTAAACCACGACAAAAACGGAACCACCGTCAACCCCGCCGTGGAATCCGCCGCAACTTCTGCTCCGGCGTCCAGCAGCGACGGTCAGAAGTCTCTGGACATGGCTGATGAGCTGATGGAAAAGGGAAACAAGGCCATGAAGGAGAATGATTTTGGTGAAGCTGCTGATAATTATAGCCGTGCTCTTGAGATCAGAGTTGCCCATTATGGTGAACTTGCTCCCGAGTGTGTCCACACATACTACAAATATGGTTGTGCACTGTTATACAAGGCTCAGGAGGAAGCCGATCCTTTGGGTGCTGTTCCCAAGAAGCAGGAGGAGTCTCCACATGGCGCCGACAAAGATGGACCTGTGAAGGGTGCTATGAATGCTGAATCATCCACTGCATCTTTTGCAAGCAATATTGAGCAGGACGTGACTTCAAACAACCAGGAGTCAGAAGTGGATAATGTGTCCGGTAAGAACGACCAGGAAGATGATGAGGATAGTGATACTGAAGAGTTGGCAGAAGGTGATGAAGACGAGTCTGACCTGGATTTGGCATGGAAAATGCTTGATGTTGCTAGAGCCATTGTTGAAAAGCAATCTGTCCATACTATGGAACAAGTTGATATACTATCAACATTGGCAGATGTTGCTCTGGAAAGAGAGGATTTTGAAACATCTCTCTCTGACTACCAGAAGGCTCTATCCATCCTAGAACAGCTGGTTGAACCAGATGATAGAAACATTGCTGACATGTATCCTTGTCATGATTATTATTTTGATACAGCCTTAACTTGTGAAATAAGAAATTTCCGTATATGCTTGTGTTTGGAGGTTAGTTCAAAACCTGAGGAAGCCGTTGCTTATTTGGAGAAGGCTACATCTGTTTGTAAGGCACGCATAAATCGTCTCACAAATGAAGTGAAGAGTTTTTCAGACTCGACATCTTCCGAGACTAATAACTCAATTGCGGATAAACAAGCAGAAATTGAAACTCTCGCAGGTCTCTCAAGTGAACTGGAAAAGAAGCTTGAAGATCTACAACAGTTAATTGCAAACCCAAAATCAATTCTCGCTGAGATTCTAGCATCTGCCAAGGCAGGCAGTGGAAAGGAACCATCTCTAGCAAGAGTGAGCTCCTCACAGTTGGCTACAGAGAACAGCAGTGGAAGTTTTGACTCTCCAACCATTTCAACCGCTCACACCAATGGATCTGCTGGAGTCACACATCTTGGTGTAGTAGGGAGAGGAGTTAAGCGATCATCAAATGCCAGCGTGGCAGAAGCAAGCATTTCAAAAAAAACAGCATTAGAAACAACCGAAGAGAAAAGTGATGGTGGCAACGCATGA

Protein sequence

>Msa0798480

MVEETPTASETSVTMPQPTEPVTAVDGTLNHDKNGTTVNPAVESAATSAPASSSDGQKSLDMADELMEKGNKAMKENDFGEAADNYSRALEIRVAHYGELAPECVHTYYKYGCALLYKAQEEADPLGAVPKKQEESPHGADKDGPVKGAMNAESSTASFASNIEQDVTSNNQESEVDNVSGKNDQEDDEDSDTEELAEGDEDESDLDLAWKMLDVARAIVEKQSVHTMEQVDILSTLADVALEREDFETSLSDYQKALSILEQLVEPDDRNIADMYPCHDYYFDTALTCEIRNFRICLCLEVSSKPEEAVAYLEKATSVCKARINRLTNEVKSFSDSTSSETNNSIADKQAEIETLAGLSSELEKKLEDLQQLIANPKSILAEILASAKAGSGKEPSLARVSSSQLATENSSGSFDSPTISTAHTNGSAGVTHLGVVGRGVKRSSNASVAEASISKKTALETTEEKSDGGNA*