Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798480 | XP_024639943.1 | 91.737 | 472 | 22 | 1 | 1 | 472 | 1 | 455 | 0.0 | 798 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798480 | G7K9G9 | 91.737 | 472 | 22 | 1 | 1 | 472 | 1 | 455 | 0.0 | 798 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030200 | Msa0798480 | 0.817390 | 3.380358e-52 | -8.615850e-47 |
| Msa0772510 | Msa0798480 | 0.946008 | 1.044589e-104 | -8.615850e-47 |
| Msa0798480 | Msa1174470 | 0.805774 | 1.134736e-49 | -8.615850e-47 |
| Msa0798480 | Msa1266990 | 0.806600 | 7.601879e-50 | -8.615850e-47 |
| Msa0798480 | Msa1356400 | 0.809598 | 1.748406e-50 | -8.615850e-47 |
| Msa0139350 | Msa0798480 | 0.819442 | 1.158702e-52 | -8.615850e-47 |
| Msa0170200 | Msa0798480 | 0.800215 | 1.599649e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798480 | MtrunA17_Chr5g0403081 | 91.737 | 472 | 22 | 1 | 1 | 472 | 1 | 455 | 0.0 | 798 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798480 | AT4G37210.1 | 47.982 | 446 | 169 | 11 | 57 | 469 | 74 | 489 | 5.80e-114 | 345 |
| Msa0798480 | AT4G37210.2 | 47.734 | 331 | 123 | 5 | 57 | 366 | 74 | 375 | 2.96e-85 | 267 |
Find 146 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAATGAGGGTTTGGGTTT+TGG | 0.051805 | 5_3:-11212301 | None:intergenic |
| ATTATATGCATGTTCCTTTA+AGG | 0.122207 | 5_3:+11216037 | Msa0798480:three_prime_UTR |
| TTCTTCAACCATGGTGATTT+TGG | 0.123936 | 5_3:-11212383 | None:intergenic |
| AAGAGGGAAAATTGAGATTT+TGG | 0.150990 | 5_3:-11212333 | None:intergenic |
| TGAGGAAGCCGTTGCTTATT+TGG | 0.172827 | 5_3:+11215214 | Msa0798480:CDS |
| ATCTCAGCGAGAATTGATTT+TGG | 0.224515 | 5_3:-11215505 | None:intergenic |
| CAATTTGCTCAATGAGGGTT+TGG | 0.248194 | 5_3:-11212308 | None:intergenic |
| ACCAAAATCATTCTCCTTCA+TGG | 0.252070 | 5_3:-11212611 | None:intergenic |
| TTTGGCGACTCTTTGAATTA+TGG | 0.252411 | 5_3:+11215834 | Msa0798480:three_prime_UTR |
| TTAAGGTTTGGCGCTGAATT+AGG | 0.256306 | 5_3:+11216054 | Msa0798480:three_prime_UTR |
| AATTCAGCGCCAAACCTTAA+AGG | 0.265840 | 5_3:-11216051 | None:intergenic |
| ATCAACAGAGTTGCCCATTA+TGG | 0.268360 | 5_3:+11213631 | Msa0798480:intron |
| GCCATGAAGGAGAATGATTT+TGG | 0.276030 | 5_3:+11212610 | Msa0798480:CDS |
| TGGAGACTCCTCCTGCTTCT+TGG | 0.302677 | 5_3:-11213749 | None:intergenic |
| ATCTTCCTGGTCGTTCTTAC+CGG | 0.304993 | 5_3:-11214599 | None:intergenic |
| CCTCCAAACACAAGCATATA+CGG | 0.321319 | 5_3:-11215178 | None:intergenic |
| TATCAACTTGTTCCATAGTA+TGG | 0.325848 | 5_3:-11214735 | None:intergenic |
| CGGGAGCAAGTTCACCATAA+TGG | 0.339759 | 5_3:-11213645 | None:intergenic |
| CACTATCCTCATCATCTTCC+TGG | 0.352582 | 5_3:-11214612 | None:intergenic |
| ATTTCTTATTTCACAAGTTA+AGG | 0.352836 | 5_3:-11215153 | None:intergenic |
| GGAGACTCCTCCTGCTTCTT+GGG | 0.358489 | 5_3:-11213748 | None:intergenic |
| ATGCATGTTCCTTTAAGGTT+TGG | 0.365790 | 5_3:+11216042 | Msa0798480:three_prime_UTR |
| GTCCACACATACTACAAATA+TGG | 0.368782 | 5_3:+11213673 | Msa0798480:CDS |
| CTGGTTCAACCAGCTGTTCT+AGG | 0.369035 | 5_3:-11214934 | None:intergenic |
| TTTCCGTATATGCTTGTGTT+TGG | 0.380312 | 5_3:+11215175 | Msa0798480:CDS |
| CGCAGGTCTCTCAAGTGAAC+TGG | 0.386407 | 5_3:+11215364 | Msa0798480:CDS |
| TTCCTTTCCACTGCCTGCCT+TGG | 0.387277 | 5_3:-11215539 | None:intergenic |
| AGACGAGTCTGACCTGGATT+TGG | 0.388595 | 5_3:+11214663 | Msa0798480:CDS |
| AAAGCAATCTGTCCATACTA+TGG | 0.392176 | 5_3:+11214723 | Msa0798480:CDS |
| TCAGGAGGAAGCCGATCCTT+TGG | 0.393753 | 5_3:+11213717 | Msa0798480:CDS |
| GGGAGCAAGTTCACCATAAT+GGG | 0.399197 | 5_3:-11213644 | None:intergenic |
| TCAGCAATGTTTCTATCATC+TGG | 0.400267 | 5_3:-11214953 | None:intergenic |
| AATTTGCTCAATGAGGGTTT+GGG | 0.404009 | 5_3:-11212307 | None:intergenic |
| GGATTCCACGGCGGGGTTGA+CGG | 0.406936 | 5_3:-11212503 | None:intergenic |
| CAGGAGGAAGCCGATCCTTT+GGG | 0.407516 | 5_3:+11213718 | Msa0798480:CDS |
| TTTGTATGGAATGATGAGTT+TGG | 0.415931 | 5_3:+11215816 | Msa0798480:three_prime_UTR |
| CTAGGATGGATAGAGCCTTC+TGG | 0.419799 | 5_3:-11214916 | None:intergenic |
| GTCACACATCTTGGTGTAGT+AGG | 0.440218 | 5_3:+11215667 | Msa0798480:CDS |
| GTTGCGGCGGATTCCACGGC+GGG | 0.447328 | 5_3:-11212511 | None:intergenic |
| AGACTTCTGACCGTCGCTGC+TGG | 0.447523 | 5_3:-11212548 | None:intergenic |
| CCGTATATGCTTGTGTTTGG+AGG | 0.449286 | 5_3:+11215178 | Msa0798480:CDS |
| GGCTGATGAGCTGATGGAAA+AGG | 0.453203 | 5_3:+11212579 | Msa0798480:CDS |
| CGCAATTGAGTTATTAGTCT+CGG | 0.463063 | 5_3:-11215315 | None:intergenic |
| ATAGCCGTGCTCTTGAGATC+AGG | 0.468923 | 5_3:+11212650 | Msa0798480:CDS |
| CTTCACAGGTCCATCTTTGT+CGG | 0.471230 | 5_3:-11213779 | None:intergenic |
| GTGGTTTAGGGTTCCGTCGA+CGG | 0.471495 | 5_3:-11212464 | None:intergenic |
| AAATAAGCAACGGCTTCCTC+AGG | 0.479407 | 5_3:-11215212 | None:intergenic |
| GAAGGCTACATCTGTTTGTA+AGG | 0.480775 | 5_3:+11215238 | Msa0798480:CDS |
| GTGACAGGTTCGGTTGGTTG+AGG | 0.484148 | 5_3:-11212439 | None:intergenic |
| CGACTCTTTGAATTATGGAT+AGG | 0.484982 | 5_3:+11215839 | Msa0798480:three_prime_UTR |
| AACATTGGCAGATGTTGCTC+TGG | 0.486208 | 5_3:+11214765 | Msa0798480:CDS |
| CAGCGACGGTCAGAAGTCTC+TGG | 0.488675 | 5_3:+11212552 | Msa0798480:CDS |
| CATTATCCACTTCTGACTCC+TGG | 0.495772 | 5_3:-11213873 | None:intergenic |
| CTCAAGTGAACTGGAAAAGA+AGG | 0.499187 | 5_3:+11215373 | Msa0798480:CDS |
| ACAAATTCTTGCAAATTCCA+TGG | 0.500578 | 5_3:+11215862 | Msa0798480:three_prime_UTR |
| GCTCACACCAATGGATCTGC+TGG | 0.500908 | 5_3:+11215643 | Msa0798480:CDS |
| CAGGAGTCAGAAGTGGATAA+TGG | 0.501825 | 5_3:+11213874 | Msa0798480:CDS |
| GGGTGCTGTTCCCAAGAAGC+AGG | 0.502021 | 5_3:+11213738 | Msa0798480:CDS |
| GTTCCGTCGACGGCTGTGAC+AGG | 0.511248 | 5_3:-11212454 | None:intergenic |
| CCACATGGCGCCGACAAAGA+TGG | 0.513330 | 5_3:+11213769 | Msa0798480:CDS |
| TGGCAACGCATGATTTATAC+TGG | 0.515317 | 5_3:+11215783 | Msa0798480:exon |
| TCTGCTGGAGTCACACATCT+TGG | 0.516862 | 5_3:+11215658 | Msa0798480:CDS |
| TCTATCCATCCTAGAACAGC+TGG | 0.517147 | 5_3:+11214925 | Msa0798480:CDS |
| GTCGACGGCTGTGACAGGTT+CGG | 0.517732 | 5_3:-11212449 | None:intergenic |
| GCATTCATAGCACCCTTCAC+AGG | 0.519577 | 5_3:-11213793 | None:intergenic |
| ATTGGTGTGAGCGGTTGAAA+TGG | 0.519732 | 5_3:-11215632 | None:intergenic |
| TGGTTCAATTTGCTCAATGA+GGG | 0.522169 | 5_3:-11212313 | None:intergenic |
| CGACAAAGATGGACCTGTGA+AGG | 0.523351 | 5_3:+11213780 | Msa0798480:CDS |
| TGCACTGTTATACAAGGCTC+AGG | 0.523635 | 5_3:+11213699 | Msa0798480:CDS |
| TGATGAAGACGAGTCTGACC+TGG | 0.523764 | 5_3:+11214657 | Msa0798480:CDS |
| GTGTGAGCGGTTGAAATGGT+TGG | 0.526499 | 5_3:-11215628 | None:intergenic |
| TGTAGGTTTATGTGTAGCTA+AGG | 0.527384 | 5_3:+11215927 | Msa0798480:three_prime_UTR |
| GCATCTGCCAAGGCAGGCAG+TGG | 0.528560 | 5_3:+11215532 | Msa0798480:CDS |
| ATTCTAGCATCTGCCAAGGC+AGG | 0.536075 | 5_3:+11215526 | Msa0798480:CDS |
| ATCCGCCGCAACTTCTGCTC+CGG | 0.538164 | 5_3:+11212522 | Msa0798480:CDS |
| AGCCGTTGCTTATTTGGAGA+AGG | 0.538307 | 5_3:+11215220 | Msa0798480:CDS |
| GGACATGGCTGATGAGCTGA+TGG | 0.539014 | 5_3:+11212573 | Msa0798480:CDS |
| TGACCGTCGCTGCTGGACGC+CGG | 0.541151 | 5_3:-11212541 | None:intergenic |
| ACCGCTCTCTGAAATTGTAA+AGG | 0.543783 | 5_3:-11212215 | None:intergenic |
| AGTTGGAGTTTCTTCAACCA+TGG | 0.544227 | 5_3:-11212392 | None:intergenic |
| TTGGTTCAATTTGCTCAATG+AGG | 0.544377 | 5_3:-11212314 | None:intergenic |
| GGATAGTGATACTGAAGAGT+TGG | 0.545697 | 5_3:+11214627 | Msa0798480:CDS |
| TCACACATCTTGGTGTAGTA+GGG | 0.546130 | 5_3:+11215668 | Msa0798480:CDS |
| GCAGATGTTGCTCTGGAAAG+AGG | 0.547971 | 5_3:+11214772 | Msa0798480:CDS |
| CGGTCAGAAGTCTCTGGACA+TGG | 0.548472 | 5_3:+11212558 | Msa0798480:CDS |
| AGAAGTTGCGGCGGATTCCA+CGG | 0.555375 | 5_3:-11212515 | None:intergenic |
| TTCAACCAGCTGTTCTAGGA+TGG | 0.560558 | 5_3:-11214930 | None:intergenic |
| AAAGGGAAACAAGGCCATGA+AGG | 0.561352 | 5_3:+11212597 | Msa0798480:CDS |
| CCATCTTTGTCGGCGCCATG+TGG | 0.566588 | 5_3:-11213769 | None:intergenic |
| ATTTCAACCGCTCACACCAA+TGG | 0.569574 | 5_3:+11215634 | Msa0798480:CDS |
| GTAGTATGTGTGGACACACT+CGG | 0.570065 | 5_3:-11213665 | None:intergenic |
| AACCATATTTGTAGTATGTG+TGG | 0.571397 | 5_3:-11213675 | None:intergenic |
| AATGCTTGCTTCTGCCACGC+TGG | 0.573158 | 5_3:-11215716 | None:intergenic |
| CATCTTGGTGTAGTAGGGAG+AGG | 0.573263 | 5_3:+11215673 | Msa0798480:CDS |
| TGTGACTCCAGCAGATCCAT+TGG | 0.573283 | 5_3:-11215650 | None:intergenic |
| GCTCCGGCGTCCAGCAGCGA+CGG | 0.574197 | 5_3:+11212538 | Msa0798480:CDS |
| ACGGCTGTGACAGGTTCGGT+TGG | 0.577242 | 5_3:-11212445 | None:intergenic |
| ACGGAAGTCTCAGATGCAGT+TGG | 0.578153 | 5_3:-11212409 | None:intergenic |
| GGGAACAGCACCCAAAGGAT+CGG | 0.585670 | 5_3:-11213728 | None:intergenic |
| AGCAGATCCATTGGTGTGAG+CGG | 0.586600 | 5_3:-11215641 | None:intergenic |
| AAGAGTGAGCTCCTCACAGT+TGG | 0.588916 | 5_3:+11215573 | Msa0798480:CDS |
| GCTGATGAGCTGATGGAAAA+GGG | 0.592738 | 5_3:+11212580 | Msa0798480:CDS |
| ACCTTTACAATTTCAGAGAG+CGG | 0.592961 | 5_3:+11212214 | Msa0798480:five_prime_UTR |
| AAACAACCAGGAGTCAGAAG+TGG | 0.594428 | 5_3:+11213867 | Msa0798480:CDS |
| GAACCTGTCACAGCCGTCGA+CGG | 0.603391 | 5_3:+11212451 | Msa0798480:CDS |
| GGACGCCGGAGCAGAAGTTG+CGG | 0.603423 | 5_3:-11212527 | None:intergenic |
| GAACATGCATATAATACTAA+CGG | 0.604036 | 5_3:-11216029 | None:intergenic |
| TGGTTGTGCACTGTTATACA+AGG | 0.606143 | 5_3:+11213693 | Msa0798480:CDS |
| TGCCAAGGCAGGCAGTGGAA+AGG | 0.606956 | 5_3:+11215537 | Msa0798480:CDS |
| AGTCTGACCTGGATTTGGCA+TGG | 0.608986 | 5_3:+11214668 | Msa0798480:CDS |
| CGCCGGAGCAGAAGTTGCGG+CGG | 0.609161 | 5_3:-11212524 | None:intergenic |
| GAGCTCACTCTTGCTAGAGA+TGG | 0.609882 | 5_3:-11215562 | None:intergenic |
| GACAAAGATGGACCTGTGAA+GGG | 0.610152 | 5_3:+11213781 | Msa0798480:CDS |
| TAGTATGTGTGGACACACTC+GGG | 0.612826 | 5_3:-11213664 | None:intergenic |
| TTCCACGGCGGGGTTGACGG+TGG | 0.613242 | 5_3:-11212500 | None:intergenic |
| GGAGGTTAGTTCAAAACCTG+AGG | 0.614213 | 5_3:+11215196 | Msa0798480:CDS |
| TTCTTGGGAACAGCACCCAA+AGG | 0.615458 | 5_3:-11213733 | None:intergenic |
| GAACGACCAGGAAGATGATG+AGG | 0.618052 | 5_3:+11214606 | Msa0798480:CDS |
| GCTCTCTGAAATTGTAAAGG+TGG | 0.620182 | 5_3:-11212212 | None:intergenic |
| CGAGACTAATAACTCAATTG+CGG | 0.622926 | 5_3:+11215316 | Msa0798480:CDS |
| ATTGCTTGCAAAAGATGCAG+TGG | 0.625303 | 5_3:-11213824 | None:intergenic |
| AGTTGATATACTATCAACAT+TGG | 0.628260 | 5_3:+11214750 | Msa0798480:CDS |
| GCAGAAATTGAAACTCTCGC+AGG | 0.629007 | 5_3:+11215347 | Msa0798480:CDS |
| GCTGATGGAAAAGGGAAACA+AGG | 0.630536 | 5_3:+11212588 | Msa0798480:CDS |
| AGCCTTCTCCAAATAAGCAA+CGG | 0.630794 | 5_3:-11215222 | None:intergenic |
| GGTTGGTTGAGGCATTGTGA+CGG | 0.637516 | 5_3:-11212428 | None:intergenic |
| AACCACCGTCAACCCCGCCG+TGG | 0.638823 | 5_3:+11212498 | Msa0798480:CDS |
| TTGGCTACAGAGAACAGCAG+TGG | 0.641006 | 5_3:+11215592 | Msa0798480:CDS |
| TGAACCTGATCTCAAGAGCA+CGG | 0.642142 | 5_3:-11212654 | None:intergenic |
| TTCCTGAAAACAGTCAACCA+TGG | 0.642562 | 5_3:-11215879 | None:intergenic |
| GATACTGAAGAGTTGGCAGA+AGG | 0.643075 | 5_3:+11214634 | Msa0798480:CDS |
| ATCTCTCTCTGACTACCAGA+AGG | 0.643674 | 5_3:+11214901 | Msa0798480:CDS |
| ACAACCGAAGAGAAAAGTGA+TGG | 0.651076 | 5_3:+11215760 | Msa0798480:CDS |
| AAGCAGGAGGAGTCTCCACA+TGG | 0.654637 | 5_3:+11213754 | Msa0798480:CDS |
| GGACGTGACTTCAAACAACC+AGG | 0.655621 | 5_3:+11213855 | Msa0798480:CDS |
| ACTGTTATACAAGGCTCAGG+AGG | 0.655923 | 5_3:+11213702 | Msa0798480:CDS |
| ACCGAAGAGAAAAGTGATGG+TGG | 0.656455 | 5_3:+11215763 | Msa0798480:CDS |
| TGCTGTTCCCAAGAAGCAGG+AGG | 0.664556 | 5_3:+11213741 | Msa0798480:CDS |
| TGAGATTCTAGCATCTGCCA+AGG | 0.664765 | 5_3:+11215522 | Msa0798480:CDS |
| TCAAAATAATAATCATGACA+AGG | 0.667146 | 5_3:-11214983 | None:intergenic |
| AGTTGCGGCGGATTCCACGG+CGG | 0.675466 | 5_3:-11212512 | None:intergenic |
| AGTGTCCGGTAAGAACGACC+AGG | 0.691630 | 5_3:+11214594 | Msa0798480:intron |
| GCGATCATCAAATGCCAGCG+TGG | 0.691972 | 5_3:+11215702 | Msa0798480:CDS |
| AAATTCTCCCAAAATCACCA+TGG | 0.699755 | 5_3:+11212375 | Msa0798480:exon |
| GTTCTCTGTAGCCAACTGTG+AGG | 0.704965 | 5_3:-11215584 | None:intergenic |
| TTGCGGCGGATTCCACGGCG+GGG | 0.708348 | 5_3:-11212510 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAAAATAAATGTAAGA+TGG | - | chr5_3:11214806-11214825 | None:intergenic | 10.0% |
| !!! | TTTTTTATTAACATTTAAAC+AGG | - | chr5_3:11215037-11215056 | None:intergenic | 10.0% |
| !!! | TAATATCTGAAATTTGAAAT+AGG | + | chr5_3:11213349-11213368 | Msa0798480:intron | 15.0% |
| !! | TTAGTTATCATAACAATATT+GGG | + | chr5_3:11213419-11213438 | Msa0798480:intron | 15.0% |
| !!! | TTTTTTTTTAACAACAATTC+AGG | - | chr5_3:11214357-11214376 | None:intergenic | 15.0% |
| !! | ATTAATAATTTCTCCAATTT+AGG | + | chr5_3:11215098-11215117 | Msa0798480:intron | 15.0% |
| !!! | TATGTTATTTTGATATAACA+TGG | + | chr5_3:11215435-11215454 | Msa0798480:intron | 15.0% |
| !! | GAAAAATGAAAGTGAAATTA+AGG | - | chr5_3:11212250-11212269 | None:intergenic | 20.0% |
| !!! | TGATCTTTAGGTTAAATTAT+TGG | + | chr5_3:11212774-11212793 | Msa0798480:intron | 20.0% |
| !!! | GATCTTTAGGTTAAATTATT+GGG | + | chr5_3:11212775-11212794 | Msa0798480:intron | 20.0% |
| !!! | ATAGACATTTTATTCTCAAA+AGG | + | chr5_3:11213231-11213250 | Msa0798480:intron | 20.0% |
| !! | TATTAATTGATGAAACGAAA+TGG | + | chr5_3:11213313-11213332 | Msa0798480:intron | 20.0% |
| !! | CTTAGTTATCATAACAATAT+TGG | + | chr5_3:11213418-11213437 | Msa0798480:intron | 20.0% |
| !!! | CATATAATTGATTTGTACAT+GGG | - | chr5_3:11213540-11213559 | None:intergenic | 20.0% |
| !!! | ACATATAATTGATTTGTACA+TGG | - | chr5_3:11213541-11213560 | None:intergenic | 20.0% |
| !!! | ACTAAAATGAGAACATTTTA+CGG | + | chr5_3:11213932-11213951 | Msa0798480:intron | 20.0% |
| !!! | AATAGATAGAAAGTGTTTTA+TGG | + | chr5_3:11214036-11214055 | Msa0798480:intron | 20.0% |
| !! | TCAAAATAATAATCATGACA+AGG | - | chr5_3:11214986-11215005 | None:intergenic | 20.0% |
| !!! | ATTTCTTATTTCACAAGTTA+AGG | - | chr5_3:11215156-11215175 | None:intergenic | 20.0% |
| !!! | AAAAACCATGAGAATTTTTA+TGG | + | chr5_3:11215993-11216012 | Msa0798480:three_prime_UTR | 20.0% |
| !! | TAAATCCATAAAAATTCTCA+TGG | - | chr5_3:11216001-11216020 | None:intergenic | 20.0% |
| !!! | GGGTTTTAAGATTTTCTTTA+TGG | - | chr5_3:11212282-11212301 | None:intergenic | 25.0% |
| ! | TAAATTATTGGGAATTGAGT+TGG | + | chr5_3:11212786-11212805 | Msa0798480:intron | 25.0% |
| !!! | TTTTTTTTGCATAAGCTATG+TGG | - | chr5_3:11213032-11213051 | None:intergenic | 25.0% |
| ! | CATAGCTTATGCAAAAAAAA+TGG | + | chr5_3:11213032-11213051 | Msa0798480:intron | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+TGG | + | chr5_3:11213126-11213145 | Msa0798480:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACT+GGG | + | chr5_3:11213127-11213146 | Msa0798480:intron | 25.0% |
| !!! | AAGATGTTATTGTCTTGTTT+TGG | + | chr5_3:11213164-11213183 | Msa0798480:intron | 25.0% |
| !!! | AAATGTTCTCATTTTAGTGA+AGG | - | chr5_3:11213930-11213949 | None:intergenic | 25.0% |
| !!! | ATGGCAATGTTTTTAATGAA+AGG | + | chr5_3:11214055-11214074 | Msa0798480:intron | 25.0% |
| !!! | TGGCAATGTTTTTAATGAAA+GGG | + | chr5_3:11214056-11214075 | Msa0798480:intron | 25.0% |
| ! | TTCCTTATTCTCTATTTATG+TGG | + | chr5_3:11214092-11214111 | Msa0798480:intron | 25.0% |
| ! | TTCCACATAAATAGAGAATA+AGG | - | chr5_3:11214097-11214116 | None:intergenic | 25.0% |
| !!! | TTTTTTAACAACAATTCAGG+AGG | - | chr5_3:11214354-11214373 | None:intergenic | 25.0% |
| !!! | ACTATTTCTTTCACTTTTCT+TGG | + | chr5_3:11214487-11214506 | Msa0798480:intron | 25.0% |
| !! | AGTTGATATACTATCAACAT+TGG | + | chr5_3:11214750-11214769 | Msa0798480:CDS | 25.0% |
| !!! | ACAATTCAACTTTTAGAACT+GGG | - | chr5_3:11214846-11214865 | None:intergenic | 25.0% |
| !!! | AACAATTCAACTTTTAGAAC+TGG | - | chr5_3:11214847-11214866 | None:intergenic | 25.0% |
| ! | TCTAAAAGTTGAATTGTTTC+TGG | + | chr5_3:11214849-11214868 | Msa0798480:intron | 25.0% |
| !! | CTAAAAGTTGAATTGTTTCT+GGG | + | chr5_3:11214850-11214869 | Msa0798480:intron | 25.0% |
| ! | TTGATATAACATGGAATGTA+TGG | + | chr5_3:11215444-11215463 | Msa0798480:intron | 25.0% |
| !! | AAAATTCTCATGGTTTTTCT+AGG | - | chr5_3:11215991-11216010 | None:intergenic | 25.0% |
| ! | GAACATGCATATAATACTAA+CGG | - | chr5_3:11216032-11216051 | None:intergenic | 25.0% |
| ! | ATTATATGCATGTTCCTTTA+AGG | + | chr5_3:11216037-11216056 | Msa0798480:three_prime_UTR | 25.0% |
| ! | AAGAGGGAAAATTGAGATTT+TGG | - | chr5_3:11212336-11212355 | None:intergenic | 30.0% |
| GCTTAATTGTGAATGAAACT+GGG | - | chr5_3:11212874-11212893 | None:intergenic | 30.0% | |
| AGCTTAATTGTGAATGAAAC+TGG | - | chr5_3:11212875-11212894 | None:intergenic | 30.0% | |
| !! | CCAATGCTTTCGTATTTTAA+AGG | - | chr5_3:11212904-11212923 | None:intergenic | 30.0% |
| !! | CCTTTAAAATACGAAAGCAT+TGG | + | chr5_3:11212901-11212920 | Msa0798480:intron | 30.0% |
| ! | GTGGTTTTCATTAGTTATCT+TGG | - | chr5_3:11213013-11213032 | None:intergenic | 30.0% |
| TAACATCTTACTATAGTGCA+TGG | - | chr5_3:11213153-11213172 | None:intergenic | 30.0% | |
| CTATAATCAAGCAATTAAGC+AGG | - | chr5_3:11213215-11213234 | None:intergenic | 30.0% | |
| ! | TCTGAAATTTGAAATAGGTC+AGG | + | chr5_3:11213354-11213373 | Msa0798480:intron | 30.0% |
| ! | CTGAAATTTGAAATAGGTCA+GGG | + | chr5_3:11213355-11213374 | Msa0798480:intron | 30.0% |
| ! | TGAAATTTGAAATAGGTCAG+GGG | + | chr5_3:11213356-11213375 | Msa0798480:intron | 30.0% |
| AACAATATTGGGAAACTCTT+TGG | + | chr5_3:11213430-11213449 | Msa0798480:intron | 30.0% | |
| AACCATATTTGTAGTATGTG+TGG | - | chr5_3:11213678-11213697 | None:intergenic | 30.0% | |
| ! | TGAGAACATTTTACGGAATT+TGG | + | chr5_3:11213939-11213958 | Msa0798480:intron | 30.0% |
| TGTATGATATTAATCTGCGT+TGG | + | chr5_3:11213974-11213993 | Msa0798480:intron | 30.0% | |
| TATTTGACATGATGAGTAGA+AGG | - | chr5_3:11214017-11214036 | None:intergenic | 30.0% | |
| !! | AGTAAACAGTTGATAACTCA+AGG | - | chr5_3:11214128-11214147 | None:intergenic | 30.0% |
| AGGAAAAAATTCCCTGATTA+GGG | - | chr5_3:11214194-11214213 | None:intergenic | 30.0% | |
| AAGGAAAAAATTCCCTGATT+AGG | - | chr5_3:11214195-11214214 | None:intergenic | 30.0% | |
| ACGTAAAATGCTTTAACCAT+GGG | - | chr5_3:11214313-11214332 | None:intergenic | 30.0% | |
| TACGTAAAATGCTTTAACCA+TGG | - | chr5_3:11214314-11214333 | None:intergenic | 30.0% | |
| TTTGCTAGCTATCACAAATA+TGG | - | chr5_3:11214439-11214458 | None:intergenic | 30.0% | |
| TAATCACCTAAGTTGTAGTT+TGG | + | chr5_3:11214526-11214545 | Msa0798480:intron | 30.0% | |
| ! | TATCAACTTGTTCCATAGTA+TGG | - | chr5_3:11214738-11214757 | None:intergenic | 30.0% |
| !!! | CAATTCAACTTTTAGAACTG+GGG | - | chr5_3:11214845-11214864 | None:intergenic | 30.0% |
| TTTGTATGGAATGATGAGTT+TGG | + | chr5_3:11215816-11215835 | Msa0798480:three_prime_UTR | 30.0% | |
| ACAAATTCTTGCAAATTCCA+TGG | + | chr5_3:11215862-11215881 | Msa0798480:three_prime_UTR | 30.0% | |
| ACCTACAGTGATGAAAAATA+TGG | - | chr5_3:11215914-11215933 | None:intergenic | 30.0% | |
| ACCTTTACAATTTCAGAGAG+CGG | + | chr5_3:11212214-11212233 | Msa0798480:five_prime_UTR | 35.0% | |
| ! | AATTTGCTCAATGAGGGTTT+GGG | - | chr5_3:11212310-11212329 | None:intergenic | 35.0% |
| ! | TGGTTCAATTTGCTCAATGA+GGG | - | chr5_3:11212316-11212335 | None:intergenic | 35.0% |
| ! | TTGGTTCAATTTGCTCAATG+AGG | - | chr5_3:11212317-11212336 | None:intergenic | 35.0% |
| GAGAGAGAAAAATGAGAAGA+GGG | - | chr5_3:11212352-11212371 | None:intergenic | 35.0% | |
| AAATTCTCCCAAAATCACCA+TGG | + | chr5_3:11212375-11212394 | Msa0798480:exon | 35.0% | |
| ! | TCTTCAACCATGGTGATTTT+GGG | - | chr5_3:11212385-11212404 | None:intergenic | 35.0% |
| ! | TTCTTCAACCATGGTGATTT+TGG | - | chr5_3:11212386-11212405 | None:intergenic | 35.0% |
| ACCAAAATCATTCTCCTTCA+TGG | - | chr5_3:11212614-11212633 | None:intergenic | 35.0% | |
| ATGCGTTGAGTTTGATCTTT+AGG | + | chr5_3:11212762-11212781 | Msa0798480:intron | 35.0% | |
| ! | TGCATGTTCTCAGTGTTTTA+TGG | + | chr5_3:11212822-11212841 | Msa0798480:intron | 35.0% |
| AAATAGGTCAGGGGTTATTA+TGG | + | chr5_3:11213365-11213384 | Msa0798480:intron | 35.0% | |
| AAAATGAAATCTCTGCTGGT+GGG | - | chr5_3:11213493-11213512 | None:intergenic | 35.0% | |
| AAAAATGAAATCTCTGCTGG+TGG | - | chr5_3:11213494-11213513 | None:intergenic | 35.0% | |
| GACAAAAATGAAATCTCTGC+TGG | - | chr5_3:11213497-11213516 | None:intergenic | 35.0% | |
| AACATTCAAACGTTCTTGTG+TGG | - | chr5_3:11213564-11213583 | None:intergenic | 35.0% | |
| GTCCACACATACTACAAATA+TGG | + | chr5_3:11213673-11213692 | Msa0798480:CDS | 35.0% | |
| ! | TTTTGCAAGCAATATTGAGC+AGG | + | chr5_3:11213834-11213853 | Msa0798480:CDS | 35.0% |
| CAACTGTTTACTCAAGACAT+AGG | + | chr5_3:11214136-11214155 | Msa0798480:intron | 35.0% | |
| GTTTACTCAAGACATAGGAT+AGG | + | chr5_3:11214141-11214160 | Msa0798480:intron | 35.0% | |
| AAAAACACCTCCTGAATTGT+TGG | + | chr5_3:11214376-11214395 | Msa0798480:intron | 35.0% | |
| AAAACACCTCCTGAATTGTT+GGG | + | chr5_3:11214377-11214396 | Msa0798480:intron | 35.0% | |
| TTGAAATGTGAAACAGTGTC+CGG | + | chr5_3:11214580-11214599 | Msa0798480:intron | 35.0% | |
| !! | GACAGATTGCTTTTCAACAA+TGG | - | chr5_3:11214716-11214735 | None:intergenic | 35.0% |
| AAAGCAATCTGTCCATACTA+TGG | + | chr5_3:11214723-11214742 | Msa0798480:CDS | 35.0% | |
| AGAGATGTTTCAAAATCCTC+TGG | - | chr5_3:11214887-11214906 | None:intergenic | 35.0% | |
| ! | TCAGCAATGTTTCTATCATC+TGG | - | chr5_3:11214956-11214975 | None:intergenic | 35.0% |
| CACAATTGGTCATCCTAAAT+TGG | - | chr5_3:11215114-11215133 | None:intergenic | 35.0% | |
| TTTCCGTATATGCTTGTGTT+TGG | + | chr5_3:11215175-11215194 | Msa0798480:CDS | 35.0% | |
| ! | CGCAATTGAGTTATTAGTCT+CGG | - | chr5_3:11215318-11215337 | None:intergenic | 35.0% |
| CGAGACTAATAACTCAATTG+CGG | + | chr5_3:11215316-11215335 | Msa0798480:CDS | 35.0% | |
| !! | TCTCAGCGAGAATTGATTTT+GGG | - | chr5_3:11215507-11215526 | None:intergenic | 35.0% |
| !! | ATCTCAGCGAGAATTGATTT+TGG | - | chr5_3:11215508-11215527 | None:intergenic | 35.0% |
| TTTGGCGACTCTTTGAATTA+TGG | + | chr5_3:11215834-11215853 | Msa0798480:three_prime_UTR | 35.0% | |
| CGACTCTTTGAATTATGGAT+AGG | + | chr5_3:11215839-11215858 | Msa0798480:three_prime_UTR | 35.0% | |
| ! | GCCATATTTTTCATCACTGT+AGG | + | chr5_3:11215910-11215929 | Msa0798480:three_prime_UTR | 35.0% |
| TGTAGGTTTATGTGTAGCTA+AGG | + | chr5_3:11215927-11215946 | Msa0798480:three_prime_UTR | 35.0% | |
| !! | ATGCATGTTCCTTTAAGGTT+TGG | + | chr5_3:11216042-11216061 | Msa0798480:three_prime_UTR | 35.0% |
| !! | GCTCTCTGAAATTGTAAAGG+TGG | - | chr5_3:11212215-11212234 | None:intergenic | 40.0% |
| !! | ACCGCTCTCTGAAATTGTAA+AGG | - | chr5_3:11212218-11212237 | None:intergenic | 40.0% |
| !! | TCAATGAGGGTTTGGGTTTT+GGG | - | chr5_3:11212303-11212322 | None:intergenic | 40.0% |
| ! | CAATTTGCTCAATGAGGGTT+TGG | - | chr5_3:11212311-11212330 | None:intergenic | 40.0% |
| CGAGAGAGAAAAATGAGAAG+AGG | - | chr5_3:11212353-11212372 | None:intergenic | 40.0% | |
| AGTTGGAGTTTCTTCAACCA+TGG | - | chr5_3:11212395-11212414 | None:intergenic | 40.0% | |
| ACCCTAAACCACGACAAAAA+CGG | + | chr5_3:11212475-11212494 | Msa0798480:CDS | 40.0% | |
| !! | TCCGTTTTTGTCGTGGTTTA+GGG | - | chr5_3:11212479-11212498 | None:intergenic | 40.0% |
| !! | TTCCGTTTTTGTCGTGGTTT+AGG | - | chr5_3:11212480-11212499 | None:intergenic | 40.0% |
| ! | GCCATGAAGGAGAATGATTT+TGG | + | chr5_3:11212610-11212629 | Msa0798480:CDS | 40.0% |
| TTGAGATCAGGTTCAATTCG+TGG | + | chr5_3:11212662-11212681 | Msa0798480:intron | 40.0% | |
| !!! | CCTACGTTTTGTTTTGATGC+GGG | - | chr5_3:11212929-11212948 | None:intergenic | 40.0% |
| !!! | CCCTACGTTTTGTTTTGATG+CGG | - | chr5_3:11212930-11212949 | None:intergenic | 40.0% |
| CCGCATCAAAACAAAACGTA+GGG | + | chr5_3:11212927-11212946 | Msa0798480:intron | 40.0% | |
| !!! | GTTTTGGCTAATTCTGTGCT+AGG | + | chr5_3:11213180-11213199 | Msa0798480:intron | 40.0% |
| TGTCAACCTGATGCTCTTAT+AGG | + | chr5_3:11213513-11213532 | Msa0798480:intron | 40.0% | |
| ATCAACAGAGTTGCCCATTA+TGG | + | chr5_3:11213631-11213650 | Msa0798480:intron | 40.0% | |
| TGGTTGTGCACTGTTATACA+AGG | + | chr5_3:11213693-11213712 | Msa0798480:CDS | 40.0% | |
| ATTGCTTGCAAAAGATGCAG+TGG | - | chr5_3:11213827-11213846 | None:intergenic | 40.0% | |
| ! | ATGTTTTCTGTGCCCTAATC+AGG | + | chr5_3:11214179-11214198 | Msa0798480:intron | 40.0% |
| ! | TGTTTTCTGTGCCCTAATCA+GGG | + | chr5_3:11214180-11214199 | Msa0798480:intron | 40.0% |
| ATGCACACGTATCAAAGAGA+AGG | - | chr5_3:11214214-11214233 | None:intergenic | 40.0% | |
| CTTTGATACGTGTGCATGAA+TGG | + | chr5_3:11214217-11214236 | Msa0798480:intron | 40.0% | |
| TGCATGAATGGCACTTATTG+TGG | + | chr5_3:11214229-11214248 | Msa0798480:intron | 40.0% | |
| GCATGAATGGCACTTATTGT+GGG | + | chr5_3:11214230-11214249 | Msa0798480:intron | 40.0% | |
| CATGAATGGCACTTATTGTG+GGG | + | chr5_3:11214231-11214250 | Msa0798480:intron | 40.0% | |
| TTCTCGCCAAACTACAACTT+AGG | - | chr5_3:11214535-11214554 | None:intergenic | 40.0% | |
| GGATAGTGATACTGAAGAGT+TGG | + | chr5_3:11214627-11214646 | Msa0798480:CDS | 40.0% | |
| CCTCCAAACACAAGCATATA+CGG | - | chr5_3:11215181-11215200 | None:intergenic | 40.0% | |
| AGCCTTCTCCAAATAAGCAA+CGG | - | chr5_3:11215225-11215244 | None:intergenic | 40.0% | |
| GAAGGCTACATCTGTTTGTA+AGG | + | chr5_3:11215238-11215257 | Msa0798480:CDS | 40.0% | |
| CTCAAGTGAACTGGAAAAGA+AGG | + | chr5_3:11215373-11215392 | Msa0798480:CDS | 40.0% | |
| ! | TCACACATCTTGGTGTAGTA+GGG | + | chr5_3:11215668-11215687 | Msa0798480:CDS | 40.0% |
| ACAACCGAAGAGAAAAGTGA+TGG | + | chr5_3:11215760-11215779 | Msa0798480:CDS | 40.0% | |
| TGGCAACGCATGATTTATAC+TGG | + | chr5_3:11215783-11215802 | Msa0798480:exon | 40.0% | |
| ! | CTGGTCTCAGTTCTTTTGTA+TGG | + | chr5_3:11215802-11215821 | Msa0798480:three_prime_UTR | 40.0% |
| ! | TTCCATGGTTGACTGTTTTC+AGG | + | chr5_3:11215877-11215896 | Msa0798480:three_prime_UTR | 40.0% |
| TTCCTGAAAACAGTCAACCA+TGG | - | chr5_3:11215882-11215901 | None:intergenic | 40.0% | |
| AATTCAGCGCCAAACCTTAA+AGG | - | chr5_3:11216054-11216073 | None:intergenic | 40.0% | |
| ! | TTAAGGTTTGGCGCTGAATT+AGG | + | chr5_3:11216054-11216073 | Msa0798480:three_prime_UTR | 40.0% |
| !! | CAATGAGGGTTTGGGTTTTG+GGG | - | chr5_3:11212302-11212321 | None:intergenic | 45.0% |
| !! | CTCAATGAGGGTTTGGGTTT+TGG | - | chr5_3:11212304-11212323 | None:intergenic | 45.0% |
| GCTGATGAGCTGATGGAAAA+GGG | + | chr5_3:11212580-11212599 | Msa0798480:CDS | 45.0% | |
| GCTGATGGAAAAGGGAAACA+AGG | + | chr5_3:11212588-11212607 | Msa0798480:CDS | 45.0% | |
| AAAGGGAAACAAGGCCATGA+AGG | + | chr5_3:11212597-11212616 | Msa0798480:CDS | 45.0% | |
| TGAACCTGATCTCAAGAGCA+CGG | - | chr5_3:11212657-11212676 | None:intergenic | 45.0% | |
| CCCGCATCAAAACAAAACGT+AGG | + | chr5_3:11212926-11212945 | Msa0798480:intron | 45.0% | |
| AACAAAACGTAGGGCCTGTT+TGG | + | chr5_3:11212936-11212955 | Msa0798480:intron | 45.0% | |
| TAGGGCCTGTTTGGATTGTT+TGG | + | chr5_3:11212945-11212964 | Msa0798480:intron | 45.0% | |
| AGGGCCTGTTTGGATTGTTT+GGG | + | chr5_3:11212946-11212965 | Msa0798480:intron | 45.0% | |
| GTCTCCCAAACAATCCAAAC+AGG | - | chr5_3:11212953-11212972 | None:intergenic | 45.0% | |
| GGCTAATTCTGTGCTAGGAA+TGG | + | chr5_3:11213185-11213204 | Msa0798480:intron | 45.0% | |
| AGGTCAGGGGTTATTATGGA+TGG | + | chr5_3:11213369-11213388 | Msa0798480:intron | 45.0% | |
| !! | ATGGGTCCTATAAGAGCATC+AGG | - | chr5_3:11213522-11213541 | None:intergenic | 45.0% |
| GGGAGCAAGTTCACCATAAT+GGG | - | chr5_3:11213647-11213666 | None:intergenic | 45.0% | |
| TAGTATGTGTGGACACACTC+GGG | - | chr5_3:11213667-11213686 | None:intergenic | 45.0% | |
| GTAGTATGTGTGGACACACT+CGG | - | chr5_3:11213668-11213687 | None:intergenic | 45.0% | |
| TGCACTGTTATACAAGGCTC+AGG | + | chr5_3:11213699-11213718 | Msa0798480:CDS | 45.0% | |
| ACTGTTATACAAGGCTCAGG+AGG | + | chr5_3:11213702-11213721 | Msa0798480:CDS | 45.0% | |
| CTTCACAGGTCCATCTTTGT+CGG | - | chr5_3:11213782-11213801 | None:intergenic | 45.0% | |
| GACAAAGATGGACCTGTGAA+GGG | + | chr5_3:11213781-11213800 | Msa0798480:CDS | 45.0% | |
| AAACAACCAGGAGTCAGAAG+TGG | + | chr5_3:11213867-11213886 | Msa0798480:CDS | 45.0% | |
| CATTATCCACTTCTGACTCC+TGG | - | chr5_3:11213876-11213895 | None:intergenic | 45.0% | |
| CAGGAGTCAGAAGTGGATAA+TGG | + | chr5_3:11213874-11213893 | Msa0798480:CDS | 45.0% | |
| TCTACTCCCAACAATTCAGG+AGG | - | chr5_3:11214386-11214405 | None:intergenic | 45.0% | |
| GTGTCTACTCCCAACAATTC+AGG | - | chr5_3:11214389-11214408 | None:intergenic | 45.0% | |
| ATCTTCCTGGTCGTTCTTAC+CGG | - | chr5_3:11214602-11214621 | None:intergenic | 45.0% | |
| CACTATCCTCATCATCTTCC+TGG | - | chr5_3:11214615-11214634 | None:intergenic | 45.0% | |
| GATACTGAAGAGTTGGCAGA+AGG | + | chr5_3:11214634-11214653 | Msa0798480:CDS | 45.0% | |
| ! | GCATTTTCCATGCCAAATCC+AGG | - | chr5_3:11214678-11214697 | None:intergenic | 45.0% |
| AACATTGGCAGATGTTGCTC+TGG | + | chr5_3:11214765-11214784 | Msa0798480:CDS | 45.0% | |
| AGAACTGGGGTAGAGAGAAT+TGG | - | chr5_3:11214832-11214851 | None:intergenic | 45.0% | |
| !!! | CTGGGATCTGTTTTTTCCAG+AGG | + | chr5_3:11214868-11214887 | Msa0798480:intron | 45.0% |
| ATCTCTCTCTGACTACCAGA+AGG | + | chr5_3:11214901-11214920 | Msa0798480:CDS | 45.0% | |
| TCTATCCATCCTAGAACAGC+TGG | + | chr5_3:11214925-11214944 | Msa0798480:CDS | 45.0% | |
| !! | TTCAACCAGCTGTTCTAGGA+TGG | - | chr5_3:11214933-11214952 | None:intergenic | 45.0% |
| ! | TAGCAGTGGAAGAGCACAAT+TGG | - | chr5_3:11215128-11215147 | None:intergenic | 45.0% |
| AAGTTAAGGCTGTCTAGCAG+TGG | - | chr5_3:11215142-11215161 | None:intergenic | 45.0% | |
| CCGTATATGCTTGTGTTTGG+AGG | + | chr5_3:11215178-11215197 | Msa0798480:CDS | 45.0% | |
| ! | GGAGGTTAGTTCAAAACCTG+AGG | + | chr5_3:11215196-11215215 | Msa0798480:CDS | 45.0% |
| AAATAAGCAACGGCTTCCTC+AGG | - | chr5_3:11215215-11215234 | None:intergenic | 45.0% | |
| TGAGGAAGCCGTTGCTTATT+TGG | + | chr5_3:11215214-11215233 | Msa0798480:CDS | 45.0% | |
| AGCCGTTGCTTATTTGGAGA+AGG | + | chr5_3:11215220-11215239 | Msa0798480:CDS | 45.0% | |
| GCAGAAATTGAAACTCTCGC+AGG | + | chr5_3:11215347-11215366 | Msa0798480:CDS | 45.0% | |
| TGAGATTCTAGCATCTGCCA+AGG | + | chr5_3:11215522-11215541 | Msa0798480:CDS | 45.0% | |
| ATTGGTGTGAGCGGTTGAAA+TGG | - | chr5_3:11215635-11215654 | None:intergenic | 45.0% | |
| ATTTCAACCGCTCACACCAA+TGG | + | chr5_3:11215634-11215653 | Msa0798480:CDS | 45.0% | |
| ! | GTCACACATCTTGGTGTAGT+AGG | + | chr5_3:11215667-11215686 | Msa0798480:CDS | 45.0% |
| ACCGAAGAGAAAAGTGATGG+TGG | + | chr5_3:11215763-11215782 | Msa0798480:CDS | 45.0% | |
| !! | GCCACCATCACTTTTCTCTT+CGG | - | chr5_3:11215767-11215786 | None:intergenic | 45.0% |
| ACGGAAGTCTCAGATGCAGT+TGG | - | chr5_3:11212412-11212431 | None:intergenic | 50.0% | |
| !! | GGTTGGTTGAGGCATTGTGA+CGG | - | chr5_3:11212431-11212450 | None:intergenic | 50.0% |
| GGCTGATGAGCTGATGGAAA+AGG | + | chr5_3:11212579-11212598 | Msa0798480:CDS | 50.0% | |
| ATAGCCGTGCTCTTGAGATC+AGG | + | chr5_3:11212650-11212669 | Msa0798480:CDS | 50.0% | |
| CTATAGTGCATGGCCCAGTT+TGG | - | chr5_3:11213143-11213162 | None:intergenic | 50.0% | |
| CGGGAGCAAGTTCACCATAA+TGG | - | chr5_3:11213648-11213667 | None:intergenic | 50.0% | |
| TTCTTGGGAACAGCACCCAA+AGG | - | chr5_3:11213736-11213755 | None:intergenic | 50.0% | |
| CGACAAAGATGGACCTGTGA+AGG | + | chr5_3:11213780-11213799 | Msa0798480:CDS | 50.0% | |
| GCATTCATAGCACCCTTCAC+AGG | - | chr5_3:11213796-11213815 | None:intergenic | 50.0% | |
| GGACGTGACTTCAAACAACC+AGG | + | chr5_3:11213855-11213874 | Msa0798480:CDS | 50.0% | |
| ! | CATGGGCTTTTTGTACCCCA+CGG | - | chr5_3:11214296-11214315 | None:intergenic | 50.0% |
| GAACGACCAGGAAGATGATG+AGG | + | chr5_3:11214606-11214625 | Msa0798480:CDS | 50.0% | |
| TGATGAAGACGAGTCTGACC+TGG | + | chr5_3:11214657-11214676 | Msa0798480:CDS | 50.0% | |
| AGACGAGTCTGACCTGGATT+TGG | + | chr5_3:11214663-11214682 | Msa0798480:CDS | 50.0% | |
| AGTCTGACCTGGATTTGGCA+TGG | + | chr5_3:11214668-11214687 | Msa0798480:CDS | 50.0% | |
| !! | GCAGATGTTGCTCTGGAAAG+AGG | + | chr5_3:11214772-11214791 | Msa0798480:CDS | 50.0% |
| CTAGGATGGATAGAGCCTTC+TGG | - | chr5_3:11214919-11214938 | None:intergenic | 50.0% | |
| CTGGTTCAACCAGCTGTTCT+AGG | - | chr5_3:11214937-11214956 | None:intergenic | 50.0% | |
| ATTCTAGCATCTGCCAAGGC+AGG | + | chr5_3:11215526-11215545 | Msa0798480:CDS | 50.0% | |
| GAGCTCACTCTTGCTAGAGA+TGG | - | chr5_3:11215565-11215584 | None:intergenic | 50.0% | |
| AAGAGTGAGCTCCTCACAGT+TGG | + | chr5_3:11215573-11215592 | Msa0798480:CDS | 50.0% | |
| GTTCTCTGTAGCCAACTGTG+AGG | - | chr5_3:11215587-11215606 | None:intergenic | 50.0% | |
| TTGGCTACAGAGAACAGCAG+TGG | + | chr5_3:11215592-11215611 | Msa0798480:CDS | 50.0% | |
| GTGTGAGCGGTTGAAATGGT+TGG | - | chr5_3:11215631-11215650 | None:intergenic | 50.0% | |
| AGCAGATCCATTGGTGTGAG+CGG | - | chr5_3:11215644-11215663 | None:intergenic | 50.0% | |
| TGTGACTCCAGCAGATCCAT+TGG | - | chr5_3:11215653-11215672 | None:intergenic | 50.0% | |
| TCTGCTGGAGTCACACATCT+TGG | + | chr5_3:11215658-11215677 | Msa0798480:CDS | 50.0% | |
| ! | CATCTTGGTGTAGTAGGGAG+AGG | + | chr5_3:11215673-11215692 | Msa0798480:CDS | 50.0% |
| ! | GTGACAGGTTCGGTTGGTTG+AGG | - | chr5_3:11212442-11212461 | None:intergenic | 55.0% |
| ! | GTGGTTTAGGGTTCCGTCGA+CGG | - | chr5_3:11212467-11212486 | None:intergenic | 55.0% |
| !! | CGGTGGTTCCGTTTTTGTCG+TGG | - | chr5_3:11212486-11212505 | None:intergenic | 55.0% |
| ! | AGAAGTTGCGGCGGATTCCA+CGG | - | chr5_3:11212518-11212537 | None:intergenic | 55.0% |
| CGGTCAGAAGTCTCTGGACA+TGG | + | chr5_3:11212558-11212577 | Msa0798480:CDS | 55.0% | |
| GGACATGGCTGATGAGCTGA+TGG | + | chr5_3:11212573-11212592 | Msa0798480:CDS | 55.0% | |
| TCAGGAGGAAGCCGATCCTT+TGG | + | chr5_3:11213717-11213736 | Msa0798480:CDS | 55.0% | |
| CAGGAGGAAGCCGATCCTTT+GGG | + | chr5_3:11213718-11213737 | Msa0798480:CDS | 55.0% | |
| GGGAACAGCACCCAAAGGAT+CGG | - | chr5_3:11213731-11213750 | None:intergenic | 55.0% | |
| TGCTGTTCCCAAGAAGCAGG+AGG | + | chr5_3:11213741-11213760 | Msa0798480:CDS | 55.0% | |
| GGAGACTCCTCCTGCTTCTT+GGG | - | chr5_3:11213751-11213770 | None:intergenic | 55.0% | |
| TGGAGACTCCTCCTGCTTCT+TGG | - | chr5_3:11213752-11213771 | None:intergenic | 55.0% | |
| AAGCAGGAGGAGTCTCCACA+TGG | + | chr5_3:11213754-11213773 | Msa0798480:CDS | 55.0% | |
| ACTCGAGTCTGTGACGTGTG+CGG | + | chr5_3:11214263-11214282 | Msa0798480:intron | 55.0% | |
| CGTGGGGTACAAAAAGCCCA+TGG | + | chr5_3:11214294-11214313 | Msa0798480:intron | 55.0% | |
| AGTGTCCGGTAAGAACGACC+AGG | + | chr5_3:11214594-11214613 | Msa0798480:intron | 55.0% | |
| CGCAGGTCTCTCAAGTGAAC+TGG | + | chr5_3:11215364-11215383 | Msa0798480:CDS | 55.0% | |
| TTCCTTTCCACTGCCTGCCT+TGG | - | chr5_3:11215542-11215561 | None:intergenic | 55.0% | |
| GCTCACACCAATGGATCTGC+TGG | + | chr5_3:11215643-11215662 | Msa0798480:CDS | 55.0% | |
| GCGATCATCAAATGCCAGCG+TGG | + | chr5_3:11215702-11215721 | Msa0798480:CDS | 55.0% | |
| AATGCTTGCTTCTGCCACGC+TGG | - | chr5_3:11215719-11215738 | None:intergenic | 55.0% | |
| ! | ACGGCTGTGACAGGTTCGGT+TGG | - | chr5_3:11212448-11212467 | None:intergenic | 60.0% |
| GTCGACGGCTGTGACAGGTT+CGG | - | chr5_3:11212452-11212471 | None:intergenic | 60.0% | |
| GAACCTGTCACAGCCGTCGA+CGG | + | chr5_3:11212451-11212470 | Msa0798480:CDS | 60.0% | |
| ATCCGCCGCAACTTCTGCTC+CGG | + | chr5_3:11212522-11212541 | Msa0798480:CDS | 60.0% | |
| AGACTTCTGACCGTCGCTGC+TGG | - | chr5_3:11212551-11212570 | None:intergenic | 60.0% | |
| CAGCGACGGTCAGAAGTCTC+TGG | + | chr5_3:11212552-11212571 | Msa0798480:CDS | 60.0% | |
| !! | GGGTGCTGTTCCCAAGAAGC+AGG | + | chr5_3:11213738-11213757 | Msa0798480:CDS | 60.0% |
| CCATCTTTGTCGGCGCCATG+TGG | - | chr5_3:11213772-11213791 | None:intergenic | 60.0% | |
| !! | CCACATGGCGCCGACAAAGA+TGG | + | chr5_3:11213769-11213788 | Msa0798480:CDS | 60.0% |
| ! | ACGTGTGCGGACTAAGTCCG+TGG | + | chr5_3:11214276-11214295 | Msa0798480:intron | 60.0% |
| ! | CGTGTGCGGACTAAGTCCGT+GGG | + | chr5_3:11214277-11214296 | Msa0798480:intron | 60.0% |
| ! | GTGTGCGGACTAAGTCCGTG+GGG | + | chr5_3:11214278-11214297 | Msa0798480:intron | 60.0% |
| TGCCAAGGCAGGCAGTGGAA+AGG | + | chr5_3:11215537-11215556 | Msa0798480:CDS | 60.0% | |
| GTTCCGTCGACGGCTGTGAC+AGG | - | chr5_3:11212457-11212476 | None:intergenic | 65.0% | |
| GGATTCCACGGCGGGGTTGA+CGG | - | chr5_3:11212506-11212525 | None:intergenic | 65.0% | |
| ! | AGTTGCGGCGGATTCCACGG+CGG | - | chr5_3:11212515-11212534 | None:intergenic | 65.0% |
| GGACGCCGGAGCAGAAGTTG+CGG | - | chr5_3:11212530-11212549 | None:intergenic | 65.0% | |
| GCATCTGCCAAGGCAGGCAG+TGG | + | chr5_3:11215532-11215551 | Msa0798480:CDS | 65.0% | |
| AACCACCGTCAACCCCGCCG+TGG | + | chr5_3:11212498-11212517 | Msa0798480:CDS | 70.0% | |
| TTCCACGGCGGGGTTGACGG+TGG | - | chr5_3:11212503-11212522 | None:intergenic | 70.0% | |
| ! | TTGCGGCGGATTCCACGGCG+GGG | - | chr5_3:11212513-11212532 | None:intergenic | 70.0% |
| ! | GTTGCGGCGGATTCCACGGC+GGG | - | chr5_3:11212514-11212533 | None:intergenic | 70.0% |
| CGCCGGAGCAGAAGTTGCGG+CGG | - | chr5_3:11212527-11212546 | None:intergenic | 70.0% | |
| TGACCGTCGCTGCTGGACGC+CGG | - | chr5_3:11212544-11212563 | None:intergenic | 70.0% | |
| GCTCCGGCGTCCAGCAGCGA+CGG | + | chr5_3:11212538-11212557 | Msa0798480:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 11212205 | 11216104 | 11212205 | ID=Msa0798480;Name=Msa0798480 |
| chr5_3 | mRNA | 11212205 | 11216104 | 11212205 | ID=Msa0798480-mRNA-1;Parent=Msa0798480;Name=Msa0798480-mRNA-1;_AED=0.11;_eAED=0.11;_QI=189|0.8|0.66|1|1|1|6|309|472 |
| chr5_3 | exon | 11212205 | 11212671 | 11212205 | ID=Msa0798480-mRNA-1:exon:4647;Parent=Msa0798480-mRNA-1 |
| chr5_3 | exon | 11213639 | 11213895 | 11213639 | ID=Msa0798480-mRNA-1:exon:4648;Parent=Msa0798480-mRNA-1 |
| chr5_3 | exon | 11214596 | 11214793 | 11214596 | ID=Msa0798480-mRNA-1:exon:4649;Parent=Msa0798480-mRNA-1 |
| chr5_3 | exon | 11214888 | 11215006 | 11214888 | ID=Msa0798480-mRNA-1:exon:4650;Parent=Msa0798480-mRNA-1 |
| chr5_3 | exon | 11215149 | 11215394 | 11215149 | ID=Msa0798480-mRNA-1:exon:4651;Parent=Msa0798480-mRNA-1 |
| chr5_3 | exon | 11215475 | 11216104 | 11215475 | ID=Msa0798480-mRNA-1:exon:4652;Parent=Msa0798480-mRNA-1 |
| chr5_3 | five_prime_UTR | 11212205 | 11212393 | 11212205 | ID=Msa0798480-mRNA-1:five_prime_utr;Parent=Msa0798480-mRNA-1 |
| chr5_3 | CDS | 11212394 | 11212671 | 11212394 | ID=Msa0798480-mRNA-1:cds;Parent=Msa0798480-mRNA-1 |
| chr5_3 | CDS | 11213639 | 11213895 | 11213639 | ID=Msa0798480-mRNA-1:cds;Parent=Msa0798480-mRNA-1 |
| chr5_3 | CDS | 11214596 | 11214793 | 11214596 | ID=Msa0798480-mRNA-1:cds;Parent=Msa0798480-mRNA-1 |
| chr5_3 | CDS | 11214888 | 11215006 | 11214888 | ID=Msa0798480-mRNA-1:cds;Parent=Msa0798480-mRNA-1 |
| chr5_3 | CDS | 11215149 | 11215394 | 11215149 | ID=Msa0798480-mRNA-1:cds;Parent=Msa0798480-mRNA-1 |
| chr5_3 | CDS | 11215475 | 11215795 | 11215475 | ID=Msa0798480-mRNA-1:cds;Parent=Msa0798480-mRNA-1 |
| chr5_3 | three_prime_UTR | 11215796 | 11216104 | 11215796 | ID=Msa0798480-mRNA-1:three_prime_utr;Parent=Msa0798480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
