AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0372340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372340 MtrunA17_Chr3g0120151 92.017 238 7 1 1 226 1 238 8.27e-162 446
Msa0372340 MtrunA17_Chr3g0136801 44.444 90 50 0 35 124 3 92 2.92e-22 87.4
Msa0372340 MtrunA17_Chr6g0460501 38.043 92 57 0 35 126 78 169 1.04e-17 78.2
Msa0372340 MtrunA17_Chr1g0203511 38.889 90 55 0 35 124 108 197 3.06e-16 75.1
Msa0372340 MtrunA17_Chr6g0470661 38.202 89 55 0 36 124 74 162 1.12e-15 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372340 AT4G14965.1 67.373 236 59 2 9 226 10 245 1.49e-113 325
Msa0372340 AT4G14965.2 68.696 115 30 1 9 117 10 124 7.87e-49 159
Msa0372340 AT2G24940.1 48.193 83 43 0 35 117 3 85 1.01e-20 84.0
Msa0372340 AT3G48890.1 39.130 92 56 0 35 126 71 162 4.46e-18 80.1
Msa0372340 AT5G52240.2 39.560 91 55 0 36 126 76 166 1.85e-17 77.4
Msa0372340 AT5G52240.1 39.130 92 56 0 35 126 75 166 2.73e-17 77.8

Find 75 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATATTGAGTCGGTATTTC+TGG 0.134405 3_1:+70770251 Msa0372340:three_prime_UTR
CCAATCCTTATAGGAATTCT+TGG 0.265933 3_1:+70767427 Msa0372340:CDS
GCTTCTCGCGCTTTCTTCTC+TGG 0.283915 3_1:+70767877 Msa0372340:CDS
CCAGGGTTGCCAATCCTTAT+AGG 0.305920 3_1:+70767418 Msa0372340:CDS
ACTAAGGGAAAATCACATTA+TGG 0.334979 3_1:+70767699 Msa0372340:CDS
AACCTCAATGCAGTTCAAAA+TGG 0.344961 3_1:+70769612 Msa0372340:CDS
ATCAGGACTCTAATACAAAT+AGG 0.359112 3_1:+70770108 Msa0372340:exon
AAAAGAGCAAAACCGGTAAT+AGG 0.364781 3_1:-70767166 None:intergenic
CTAGCAACTTCTCCTATTAC+CGG 0.366163 3_1:+70767154 Msa0372340:CDS
GGAGGTTATCATCACTTTGC+TGG 0.376414 3_1:+70767729 Msa0372340:CDS
TTGTTCAATGGAACTGATCC+AGG 0.379913 3_1:+70767400 Msa0372340:CDS
TGCTTTGAAGAGTCTCAGTT+AGG 0.386400 3_1:+70770025 Msa0372340:CDS
GTTAGGGCAACCTGGGTTAG+AGG 0.389138 3_1:+70770042 Msa0372340:CDS
CCCACCCAAGAATTCCTATA+AGG 0.391806 3_1:-70767432 None:intergenic
AACAGATGCAAAGTTTAATC+AGG 0.408417 3_1:+70770091 Msa0372340:exon
ACAACGCTTACTCATCTTCC+CGG 0.429683 3_1:-70769999 None:intergenic
TTTAATGAAGCTGGTAATTG+AGG 0.431334 3_1:+70770187 Msa0372340:three_prime_UTR
CAATCCTTATAGGAATTCTT+GGG 0.434357 3_1:+70767428 Msa0372340:CDS
GTCTGTGTTTGATGTAACTA+AGG 0.435997 3_1:+70767683 Msa0372340:CDS
ATCCTACAAAATATTTGAAA+GGG 0.443636 3_1:+70769525 Msa0372340:CDS
GAAGAGCTTGCATTGTTCAA+TGG 0.446040 3_1:+70767388 Msa0372340:CDS
ATACCTCACCGCCCTCATCT+TGG 0.447566 3_1:-70769637 None:intergenic
TTCTTCTCTGGAAATTTCAC+AGG 0.449479 3_1:+70767889 Msa0372340:CDS
GAGTCTCAGTTAGGGCAACC+TGG 0.454818 3_1:+70770034 Msa0372340:CDS
AAGGACGAAAAGAGCAAAAC+CGG 0.461374 3_1:-70767173 None:intergenic
GCTACCCTAGGTTGGTTAAG+AGG 0.467216 3_1:+70769957 Msa0372340:CDS
CCACTAGAAATTGCTTTGAC+CGG 0.478742 3_1:+70769980 Msa0372340:CDS
AGAAGAGTGCCTCCGGTGCT+TGG 0.494069 3_1:+70770308 Msa0372340:three_prime_UTR
CCTATAAGGATTGGCAACCC+TGG 0.496548 3_1:-70767418 None:intergenic
AATCCTACAAAATATTTGAA+AGG 0.498002 3_1:+70769524 Msa0372340:CDS
CCTGTGAAGTGATGGAAAAT+CGG 0.503383 3_1:-70767213 None:intergenic
CCAAGAATTCCTATAAGGAT+TGG 0.505658 3_1:-70767427 None:intergenic
CACTAGAAATTGCTTTGACC+GGG 0.507680 3_1:+70769981 Msa0372340:CDS
GGAGAAGAAGAGCAAGGAAA+AGG 0.512294 3_1:-70767192 None:intergenic
GGAAAATCACATTATGGTCC+AGG 0.518452 3_1:+70767705 Msa0372340:CDS
AAGTGATGATAACCTCCTCC+TGG 0.519496 3_1:-70767723 None:intergenic
GCTTTGAAGAGTCTCAGTTA+GGG 0.527825 3_1:+70770026 Msa0372340:CDS
TTCAAAATGGAGCCAAGATG+AGG 0.538293 3_1:+70769625 Msa0372340:CDS
GATCAGGTATGGTGTGATGT+TGG 0.545254 3_1:+70769935 Msa0372340:intron
TCACATTATGGTCCAGGAGG+AGG 0.548964 3_1:+70767711 Msa0372340:CDS
TTTGAAAGGGGTCGAAGCTA+AGG 0.554491 3_1:+70769538 Msa0372340:CDS
GTTATCATCACTTTGCTGGA+AGG 0.556971 3_1:+70767733 Msa0372340:CDS
TGATGTTGGCTACCCTAGGT+TGG 0.557940 3_1:+70769949 Msa0372340:CDS
AAAAGTGACCTGTGAAGTGA+TGG 0.571043 3_1:-70767221 None:intergenic
TCTGTGTTTGATGTAACTAA+GGG 0.574594 3_1:+70767684 Msa0372340:CDS
GATTTGTAGAAGAGTGCCTC+CGG 0.577250 3_1:+70770301 Msa0372340:three_prime_UTR
TACGATCCTCACACAGAACA+AGG 0.577912 3_1:+70767114 Msa0372340:five_prime_UTR
CAAGAGTGTAGTTGACTGGA+GGG 0.581429 3_1:+70768956 Msa0372340:CDS
GGTGTGATGTTGGCTACCCT+AGG 0.583244 3_1:+70769945 Msa0372340:CDS
AGTCTCAGTTAGGGCAACCT+GGG 0.583949 3_1:+70770035 Msa0372340:CDS
AGTGGCCTCTTAACCAACCT+AGG 0.589308 3_1:-70769962 None:intergenic
AGGTCAAGAGTGTAGTTGAC+TGG 0.590092 3_1:+70768952 Msa0372340:intron
CCGGTCAAAGCAATTTCTAG+TGG 0.593019 3_1:-70769980 None:intergenic
CCTGGGTTAGAGGTATATGA+AGG 0.601402 3_1:+70770052 Msa0372340:CDS
TCAAAATGGAGCCAAGATGA+GGG 0.601857 3_1:+70769626 Msa0372340:CDS
GTCGAAGCTAAGGCGGCAAG+AGG 0.606309 3_1:+70769548 Msa0372340:CDS
ATCATTCTTTACATCACGTG+TGG 0.608177 3_1:-70770281 None:intergenic
TCCTACAAAATATTTGAAAG+GGG 0.614400 3_1:+70769526 Msa0372340:CDS
TGTGAACGAATTCCAAGCAC+CGG 0.614479 3_1:-70770320 None:intergenic
AGAAAAGCAGAAGATTGAAG+AGG 0.616982 3_1:+70769583 Msa0372340:CDS
GTGGCCTCTTAACCAACCTA+GGG 0.621270 3_1:-70769961 None:intergenic
CCTTCATATACCTCTAACCC+AGG 0.622425 3_1:-70770052 None:intergenic
TCAAGAGTGTAGTTGACTGG+AGG 0.626751 3_1:+70768955 Msa0372340:CDS
AATATCACTTCATATTGAGT+CGG 0.626949 3_1:+70770242 Msa0372340:three_prime_UTR
TCATCGCCTTGTTCTGTGTG+AGG 0.642781 3_1:-70767120 None:intergenic
TGTTCAATGGAACTGATCCA+GGG 0.648587 3_1:+70767401 Msa0372340:CDS
GAAAGGGGTCGAAGCTAAGG+CGG 0.668082 3_1:+70769541 Msa0372340:CDS
AAGAGTGTAGTTGACTGGAG+GGG 0.668565 3_1:+70768957 Msa0372340:CDS
GAGCCAAGATGAGGGCGGTG+AGG 0.675361 3_1:+70769634 Msa0372340:CDS
AAAATCGGAGAAGAAGAGCA+AGG 0.676332 3_1:-70767198 None:intergenic
GGACTCACTGACTCATTGCG+CGG 0.685717 3_1:+70768783 Msa0372340:CDS
AAATCACATTATGGTCCAGG+AGG 0.693984 3_1:+70767708 Msa0372340:CDS
GAACGAATTCCAAGCACCGG+AGG 0.699973 3_1:-70770317 None:intergenic
AAATGGAGCCAAGATGAGGG+CGG 0.711633 3_1:+70769629 Msa0372340:CDS
GCGCGGTCTGTCTAGCACTG+AGG 0.718490 3_1:+70768800 Msa0372340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGCTTTAAAATATAAAAA+CGG + chr3_1:70768516-70768535 Msa0372340:intron 10.0%
!! AAATTAAAGTTATAAATTCA+AGG - chr3_1:70768864-70768883 None:intergenic 10.0%
!!! TATTTTGAATATGTATATTA+AGG + chr3_1:70770159-70770178 Msa0372340:three_prime_UTR 10.0%
!! AATTGATGAATAAAAATTGT+TGG - chr3_1:70767252-70767271 None:intergenic 15.0%
!!! ATCTTTGATTGTTTTTTTAT+AGG + chr3_1:70767661-70767680 Msa0372340:intron 15.0%
!!! ATTTAAAACATTAAGATGAT+GGG - chr3_1:70768174-70768193 None:intergenic 15.0%
!!! AATTTAAAACATTAAGATGA+TGG - chr3_1:70768175-70768194 None:intergenic 15.0%
!!! ATGCTTTAAAATATAAAAAC+GGG + chr3_1:70768517-70768536 Msa0372340:intron 15.0%
!!! AGGATTTTTTATTTTTTTTG+AGG + chr3_1:70770128-70770147 Msa0372340:three_prime_UTR 15.0%
!! ACTAAATGAAAGCAATATAT+GGG + chr3_1:70768246-70768265 Msa0372340:intron 20.0%
!! TGATATACAAAAACAACTAA+AGG - chr3_1:70768385-70768404 None:intergenic 20.0%
!!! TTACATTTTAACAACCTTAA+AGG + chr3_1:70768420-70768439 Msa0372340:intron 20.0%
!! AGTACATATTATATTGTTCA+AGG - chr3_1:70768723-70768742 None:intergenic 20.0%
!! TTAATTAACCTGAATTAATC+TGG + chr3_1:70768890-70768909 Msa0372340:intron 20.0%
!! AATCCTACAAAATATTTGAA+AGG + chr3_1:70769524-70769543 Msa0372340:CDS 20.0%
!! ATCCTACAAAATATTTGAAA+GGG + chr3_1:70769525-70769544 Msa0372340:CDS 20.0%
!!! ACTCATAAGTAATTGTTATT+GGG - chr3_1:70769722-70769741 None:intergenic 20.0%
!! TAGAATTAAATTAGAGTGAT+GGG - chr3_1:70769785-70769804 None:intergenic 20.0%
!! TTAGAATTAAATTAGAGTGA+TGG - chr3_1:70769786-70769805 None:intergenic 20.0%
!! TTTAGCTAATCAAAATAATG+TGG + chr3_1:70769819-70769838 Msa0372340:intron 20.0%
! TACAAATCATCAATCTTTCA+TGG + chr3_1:70767488-70767507 Msa0372340:intron 25.0%
! TCAATTGACGTTGAAAATTA+TGG + chr3_1:70767574-70767593 Msa0372340:intron 25.0%
! TACAAACTGAACAAAAACAT+GGG - chr3_1:70767786-70767805 None:intergenic 25.0%
! ATACAAACTGAACAAAAACA+TGG - chr3_1:70767787-70767806 None:intergenic 25.0%
! TTCAAATGGGTAAATTTCAT+TGG - chr3_1:70767817-70767836 None:intergenic 25.0%
! AGAAAAACATGAGTTCAAAT+GGG - chr3_1:70767830-70767849 None:intergenic 25.0%
! AAGAAAAACATGAGTTCAAA+TGG - chr3_1:70767831-70767850 None:intergenic 25.0%
!! ATTTGAACTCATGTTTTTCT+TGG + chr3_1:70767830-70767849 Msa0372340:intron 25.0%
! AGGTGAAATAGTTATTTATG+TGG + chr3_1:70767909-70767928 Msa0372340:intron 25.0%
! GGTGAAATAGTTATTTATGT+GGG + chr3_1:70767910-70767929 Msa0372340:intron 25.0%
!! ATTTTATCATCAAACCATTG+TGG - chr3_1:70768205-70768224 None:intergenic 25.0%
! GACTAAATGAAAGCAATATA+TGG + chr3_1:70768245-70768264 Msa0372340:intron 25.0%
! GATTCCAGAAAAATTAACAA+AGG - chr3_1:70768286-70768305 None:intergenic 25.0%
! AGAAATTGAGAACTCTAATT+AGG - chr3_1:70768308-70768327 None:intergenic 25.0%
!!! GGTGAATCTAATCTTATTTT+TGG - chr3_1:70768567-70768586 None:intergenic 25.0%
! TTTCAAAACTAGATCTATAC+AGG - chr3_1:70768631-70768650 None:intergenic 25.0%
! TGAAATGTTATAGTATACCA+TGG + chr3_1:70768646-70768665 Msa0372340:intron 25.0%
!! TCAAGGAATAAATTGTTTCT+AGG - chr3_1:70768706-70768725 None:intergenic 25.0%
! ATAACTAATGTAACGTAAGA+AGG - chr3_1:70769098-70769117 None:intergenic 25.0%
! TTACGTTACATTAGTTATGA+TGG + chr3_1:70769100-70769119 Msa0372340:intron 25.0%
! TCTCCTTAATACATAATCTA+CGG - chr3_1:70769321-70769340 None:intergenic 25.0%
!! GTTTCTCTTATAGTTTTTCT+AGG - chr3_1:70769389-70769408 None:intergenic 25.0%
!!! AAGTAAGGATAAGTATTGAA+GGG - chr3_1:70769450-70769469 None:intergenic 25.0%
!!! AAAGTAAGGATAAGTATTGA+AGG - chr3_1:70769451-70769470 None:intergenic 25.0%
! TATCCTTACTTTACTTATGT+AGG + chr3_1:70769459-70769478 Msa0372340:intron 25.0%
! TCCTACAAAATATTTGAAAG+GGG + chr3_1:70769526-70769545 Msa0372340:CDS 25.0%
! GACTCATAAGTAATTGTTAT+TGG - chr3_1:70769723-70769742 None:intergenic 25.0%
! TGTAAAATATGACGACAATT+TGG - chr3_1:70769858-70769877 None:intergenic 25.0%
! AATATCACTTCATATTGAGT+CGG + chr3_1:70770242-70770261 Msa0372340:three_prime_UTR 25.0%
CAATCCTTATAGGAATTCTT+GGG + chr3_1:70767428-70767447 Msa0372340:CDS 30.0%
TTCACAAAAAACTGTGACTA+TGG - chr3_1:70767620-70767639 None:intergenic 30.0%
TCTGTGTTTGATGTAACTAA+GGG + chr3_1:70767684-70767703 Msa0372340:CDS 30.0%
ACTAAGGGAAAATCACATTA+TGG + chr3_1:70767699-70767718 Msa0372340:CDS 30.0%
GGGTTGAATTTCACTTTAAA+TGG + chr3_1:70767930-70767949 Msa0372340:intron 30.0%
TCTTCATTTGTATCCTACAT+TGG + chr3_1:70767980-70767999 Msa0372340:intron 30.0%
CAACAAAGTATAACCAATGT+AGG - chr3_1:70767996-70768015 None:intergenic 30.0%
! GTGACCTTTGTTAATTTTTC+TGG + chr3_1:70768279-70768298 Msa0372340:intron 30.0%
!! CAAAAGCAAAAGTACCTTTA+AGG - chr3_1:70768437-70768456 None:intergenic 30.0%
CGATGTTCTGATTTATCTAA+AGG - chr3_1:70768496-70768515 None:intergenic 30.0%
!! TCTTTAGAGTGAAAATCGAA+AGG + chr3_1:70768599-70768618 Msa0372340:intron 30.0%
!! AAGTTTTGGTAATAGTACCA+TGG - chr3_1:70768666-70768685 None:intergenic 30.0%
! TTCCTTTTTGTTGATCATGT+AGG + chr3_1:70768756-70768775 Msa0372340:intron 30.0%
TCTATCTTCCAGATTAATTC+AGG - chr3_1:70768901-70768920 None:intergenic 30.0%
! ACGCAGTTTAATTTAAGGTA+AGG - chr3_1:70768930-70768949 None:intergenic 30.0%
AAAACAAAGTAGCAGATTGA+AGG - chr3_1:70769017-70769036 None:intergenic 30.0%
GATTAAAGATATGCTTGCTT+TGG + chr3_1:70769052-70769071 Msa0372340:intron 30.0%
AGATCGTAGAAACTATGATT+AGG + chr3_1:70769270-70769289 Msa0372340:intron 30.0%
CTCCTTAATACATAATCTAC+GGG - chr3_1:70769320-70769339 None:intergenic 30.0%
! AATATTTTGTAGGATTCCCT+CGG - chr3_1:70769520-70769539 None:intergenic 30.0%
! ACCCCTTTCAAATATTTTGT+AGG - chr3_1:70769530-70769549 None:intergenic 30.0%
TAATCTGCATTTATGCAGAT+AGG - chr3_1:70769894-70769913 None:intergenic 30.0%
ATAAATGCAGATTATGACAC+AGG + chr3_1:70769900-70769919 Msa0372340:intron 30.0%
!!! TTACTTGTTTTGATCAGGTA+TGG + chr3_1:70769924-70769943 Msa0372340:intron 30.0%
AACAGATGCAAAGTTTAATC+AGG + chr3_1:70770091-70770110 Msa0372340:exon 30.0%
ATCAGGACTCTAATACAAAT+AGG + chr3_1:70770108-70770127 Msa0372340:exon 30.0%
!!! AAGGCTTATTTTAATGAAGC+TGG + chr3_1:70770178-70770197 Msa0372340:three_prime_UTR 30.0%
TTTAATGAAGCTGGTAATTG+AGG + chr3_1:70770187-70770206 Msa0372340:three_prime_UTR 30.0%
AAAAGAGCAAAACCGGTAAT+AGG - chr3_1:70767169-70767188 None:intergenic 35.0%
CCAAGAATTCCTATAAGGAT+TGG - chr3_1:70767430-70767449 None:intergenic 35.0%
CCAATCCTTATAGGAATTCT+TGG + chr3_1:70767427-70767446 Msa0372340:CDS 35.0%
GTAGCTGGTGTATGAAAAAT+TGG - chr3_1:70767517-70767536 None:intergenic 35.0%
! TTAACCATACTTTTGCTTGC+AGG - chr3_1:70767553-70767572 None:intergenic 35.0%
GTCTGTGTTTGATGTAACTA+AGG + chr3_1:70767683-70767702 Msa0372340:CDS 35.0%
! TGAACTCATGTTTTTCTTGG+TGG + chr3_1:70767833-70767852 Msa0372340:intron 35.0%
! GAACTCATGTTTTTCTTGGT+GGG + chr3_1:70767834-70767853 Msa0372340:intron 35.0%
! AACTCATGTTTTTCTTGGTG+GGG + chr3_1:70767835-70767854 Msa0372340:intron 35.0%
! TTCTTCTCTGGAAATTTCAC+AGG + chr3_1:70767889-70767908 Msa0372340:CDS 35.0%
!!! ACATGTCTACCTTGTTTTCA+CGG + chr3_1:70768081-70768100 Msa0372340:intron 35.0%
TTAAATTGCTACTGCCACAA+TGG + chr3_1:70768188-70768207 Msa0372340:intron 35.0%
!! AGAAGTTTTCAAGCATGAAG+TGG - chr3_1:70768351-70768370 None:intergenic 35.0%
AACTAGATCTATACAGGACA+GGG - chr3_1:70768625-70768644 None:intergenic 35.0%
AAACTAGATCTATACAGGAC+AGG - chr3_1:70768626-70768645 None:intergenic 35.0%
! AGCAATAGCAGGAAAAGTTT+TGG - chr3_1:70768680-70768699 None:intergenic 35.0%
CTCCTACATGATCAACAAAA+AGG - chr3_1:70768761-70768780 None:intergenic 35.0%
TTTGTTGATCATGTAGGAGA+TGG + chr3_1:70768762-70768781 Msa0372340:intron 35.0%
AAATTCAAGGAGAGAAGAAC+AGG - chr3_1:70768851-70768870 None:intergenic 35.0%
! AAAGATATGCTTGCTTTGGA+AGG + chr3_1:70769056-70769075 Msa0372340:intron 35.0%
TCGTAGAAACTATGATTAGG+TGG + chr3_1:70769273-70769292 Msa0372340:intron 35.0%
GACCCGTAGATTATGTATTA+AGG + chr3_1:70769315-70769334 Msa0372340:intron 35.0%
AAGGAGAGTAGATCAAATAG+AGG + chr3_1:70769334-70769353 Msa0372340:intron 35.0%
AGGAGAGTAGATCAAATAGA+GGG + chr3_1:70769335-70769354 Msa0372340:intron 35.0%
AGGCCTACATAAGTAAAGTA+AGG - chr3_1:70769465-70769484 None:intergenic 35.0%
AGAAAAGCAGAAGATTGAAG+AGG + chr3_1:70769583-70769602 Msa0372340:CDS 35.0%
AACCTCAATGCAGTTCAAAA+TGG + chr3_1:70769612-70769631 Msa0372340:CDS 35.0%
!!! CAGGTTTACTTGTTTTGATC+AGG + chr3_1:70769919-70769938 Msa0372340:intron 35.0%
TCATATTGAGTCGGTATTTC+TGG + chr3_1:70770251-70770270 Msa0372340:three_prime_UTR 35.0%
ATCATTCTTTACATCACGTG+TGG - chr3_1:70770284-70770303 None:intergenic 35.0%
CTAGCAACTTCTCCTATTAC+CGG + chr3_1:70767154-70767173 Msa0372340:CDS 40.0%
AAGGACGAAAAGAGCAAAAC+CGG - chr3_1:70767176-70767195 None:intergenic 40.0%
AAAATCGGAGAAGAAGAGCA+AGG - chr3_1:70767201-70767220 None:intergenic 40.0%
! CCTGTGAAGTGATGGAAAAT+CGG - chr3_1:70767216-70767235 None:intergenic 40.0%
AAAAGTGACCTGTGAAGTGA+TGG - chr3_1:70767224-70767243 None:intergenic 40.0%
GAAGAGCTTGCATTGTTCAA+TGG + chr3_1:70767388-70767407 Msa0372340:CDS 40.0%
TTGTTCAATGGAACTGATCC+AGG + chr3_1:70767400-70767419 Msa0372340:CDS 40.0%
TGTTCAATGGAACTGATCCA+GGG + chr3_1:70767401-70767420 Msa0372340:CDS 40.0%
TCCTTATAGGAATTCTTGGG+TGG + chr3_1:70767431-70767450 Msa0372340:intron 40.0%
CCTTATAGGAATTCTTGGGT+GGG + chr3_1:70767432-70767451 Msa0372340:intron 40.0%
GGTGATTAATCAAGTGTAGC+TGG - chr3_1:70767532-70767551 None:intergenic 40.0%
ATCACCTGCAAGCAAAAGTA+TGG + chr3_1:70767546-70767565 Msa0372340:intron 40.0%
GGAAAATCACATTATGGTCC+AGG + chr3_1:70767705-70767724 Msa0372340:CDS 40.0%
AAATCACATTATGGTCCAGG+AGG + chr3_1:70767708-70767727 Msa0372340:CDS 40.0%
GTTATCATCACTTTGCTGGA+AGG + chr3_1:70767733-70767752 Msa0372340:CDS 40.0%
AACAAAAACATGGGTGAAGC+AGG - chr3_1:70767777-70767796 None:intergenic 40.0%
GTGGGGATTTCATGATTTCA+GGG + chr3_1:70767852-70767871 Msa0372340:intron 40.0%
ATTGCAACACCGTGAAAACA+AGG - chr3_1:70768093-70768112 None:intergenic 40.0%
! CTCTAAAGAAACTGCAGCTA+GGG - chr3_1:70768588-70768607 None:intergenic 40.0%
! ACTCTAAAGAAACTGCAGCT+AGG - chr3_1:70768589-70768608 None:intergenic 40.0%
! CCTGCACGCAGTTTAATTTA+AGG - chr3_1:70768935-70768954 None:intergenic 40.0%
CCTTAAATTAAACTGCGTGC+AGG + chr3_1:70768932-70768951 Msa0372340:intron 40.0%
!! TATGCTTGCTTTGGAAGGAT+AGG + chr3_1:70769061-70769080 Msa0372340:intron 40.0%
GTTATGAGCATAGCAGAGTA+AGG + chr3_1:70769158-70769177 Msa0372340:intron 40.0%
! GGAAGTGTGGTAAGACTAAA+CGG + chr3_1:70769191-70769210 Msa0372340:intron 40.0%
GAAGTGTGGTAAGACTAAAC+GGG + chr3_1:70769192-70769211 Msa0372340:intron 40.0%
ATGACGACATTAGAGAGAGT+TGG + chr3_1:70769227-70769246 Msa0372340:intron 40.0%
TGACGACATTAGAGAGAGTT+GGG + chr3_1:70769228-70769247 Msa0372340:intron 40.0%
TCTACGATCTTTGCTACTGA+AGG - chr3_1:70769260-70769279 None:intergenic 40.0%
AGGGTAGTCAAATCACTAGA+GGG + chr3_1:70769354-70769373 Msa0372340:intron 40.0%
CTTTACTTATGTAGGCCTGT+TGG + chr3_1:70769467-70769486 Msa0372340:intron 40.0%
! CTCCATTTTGAACTGCATTG+AGG - chr3_1:70769617-70769636 None:intergenic 40.0%
TTCAAAATGGAGCCAAGATG+AGG + chr3_1:70769625-70769644 Msa0372340:CDS 40.0%
TCAAAATGGAGCCAAGATGA+GGG + chr3_1:70769626-70769645 Msa0372340:CDS 40.0%
CCACTAGAAATTGCTTTGAC+CGG + chr3_1:70769980-70769999 Msa0372340:CDS 40.0%
CACTAGAAATTGCTTTGACC+GGG + chr3_1:70769981-70770000 Msa0372340:CDS 40.0%
!! TGCTTTGAAGAGTCTCAGTT+AGG + chr3_1:70770025-70770044 Msa0372340:CDS 40.0%
!! GCTTTGAAGAGTCTCAGTTA+GGG + chr3_1:70770026-70770045 Msa0372340:CDS 40.0%
TACGATCCTCACACAGAACA+AGG + chr3_1:70767114-70767133 Msa0372340:five_prime_UTR 45.0%
GGAGAAGAAGAGCAAGGAAA+AGG - chr3_1:70767195-70767214 None:intergenic 45.0%
! CCGATTTTCCATCACTTCAC+AGG + chr3_1:70767213-70767232 Msa0372340:CDS 45.0%
CCCACCCAAGAATTCCTATA+AGG - chr3_1:70767435-70767454 None:intergenic 45.0%
AAGTGATGATAACCTCCTCC+TGG - chr3_1:70767726-70767745 None:intergenic 45.0%
GGAGGTTATCATCACTTTGC+TGG + chr3_1:70767729-70767748 Msa0372340:CDS 45.0%
AACATGGGTGAAGCAGGAAA+GGG - chr3_1:70767771-70767790 None:intergenic 45.0%
AAACATGGGTGAAGCAGGAA+AGG - chr3_1:70767772-70767791 None:intergenic 45.0%
GGTGGGGATTTCATGATTTC+AGG + chr3_1:70767851-70767870 Msa0372340:intron 45.0%
! TTTCTAGGAGCAGCAATAGC+AGG - chr3_1:70768691-70768710 None:intergenic 45.0%
! AGGTCAAGAGTGTAGTTGAC+TGG + chr3_1:70768952-70768971 Msa0372340:intron 45.0%
! TCAAGAGTGTAGTTGACTGG+AGG + chr3_1:70768955-70768974 Msa0372340:CDS 45.0%
! CAAGAGTGTAGTTGACTGGA+GGG + chr3_1:70768956-70768975 Msa0372340:CDS 45.0%
! AAGAGTGTAGTTGACTGGAG+GGG + chr3_1:70768957-70768976 Msa0372340:CDS 45.0%
! CATAACAGTGCAAGAGCATG+TGG - chr3_1:70769144-70769163 None:intergenic 45.0%
GTGGTAAGACTAAACGGGAT+AGG + chr3_1:70769197-70769216 Msa0372340:intron 45.0%
GACGACATTAGAGAGAGTTG+GGG + chr3_1:70769229-70769248 Msa0372340:intron 45.0%
GAGGGTAGTCAAATCACTAG+AGG + chr3_1:70769353-70769372 Msa0372340:intron 45.0%
AGTCAAATCACTAGAGGGAG+AGG + chr3_1:70769359-70769378 Msa0372340:intron 45.0%
TTTGAAAGGGGTCGAAGCTA+AGG + chr3_1:70769538-70769557 Msa0372340:CDS 45.0%
GATCAGGTATGGTGTGATGT+TGG + chr3_1:70769935-70769954 Msa0372340:intron 45.0%
! CCGGTCAAAGCAATTTCTAG+TGG - chr3_1:70769983-70770002 None:intergenic 45.0%
ACAACGCTTACTCATCTTCC+CGG - chr3_1:70770002-70770021 None:intergenic 45.0%
CCTTCATATACCTCTAACCC+AGG - chr3_1:70770055-70770074 None:intergenic 45.0%
! CCTGGGTTAGAGGTATATGA+AGG + chr3_1:70770052-70770071 Msa0372340:CDS 45.0%
!! GATTTGTAGAAGAGTGCCTC+CGG + chr3_1:70770301-70770320 Msa0372340:three_prime_UTR 45.0%
TGTGAACGAATTCCAAGCAC+CGG - chr3_1:70770323-70770342 None:intergenic 45.0%
! TCATCGCCTTGTTCTGTGTG+AGG - chr3_1:70767123-70767142 None:intergenic 50.0%
! CCTATAAGGATTGGCAACCC+TGG - chr3_1:70767421-70767440 None:intergenic 50.0%
CCAGGGTTGCCAATCCTTAT+AGG + chr3_1:70767418-70767437 Msa0372340:CDS 50.0%
TCACATTATGGTCCAGGAGG+AGG + chr3_1:70767711-70767730 Msa0372340:CDS 50.0%
GCAGAGTAAGGTAGTTGCGT+TGG + chr3_1:70769170-70769189 Msa0372340:intron 50.0%
AGGTAGTTGCGTTGGAAGTG+TGG + chr3_1:70769178-70769197 Msa0372340:intron 50.0%
AGGCCTGTTGGCAAGTTAGT+TGG + chr3_1:70769479-70769498 Msa0372340:intron 50.0%
! CGACCAACTAACTTGCCAAC+AGG - chr3_1:70769485-70769504 None:intergenic 50.0%
GTCGATACTACGATAGCCGA+GGG + chr3_1:70769501-70769520 Msa0372340:intron 50.0%
AAATGGAGCCAAGATGAGGG+CGG + chr3_1:70769629-70769648 Msa0372340:CDS 50.0%
! TGATGTTGGCTACCCTAGGT+TGG + chr3_1:70769949-70769968 Msa0372340:CDS 50.0%
!! GCTACCCTAGGTTGGTTAAG+AGG + chr3_1:70769957-70769976 Msa0372340:CDS 50.0%
GTGGCCTCTTAACCAACCTA+GGG - chr3_1:70769964-70769983 None:intergenic 50.0%
AGTGGCCTCTTAACCAACCT+AGG - chr3_1:70769965-70769984 None:intergenic 50.0%
AGTCTCAGTTAGGGCAACCT+GGG + chr3_1:70770035-70770054 Msa0372340:CDS 50.0%
GCTTCTCGCGCTTTCTTCTC+TGG + chr3_1:70767877-70767896 Msa0372340:CDS 55.0%
!! GGACTCACTGACTCATTGCG+CGG + chr3_1:70768783-70768802 Msa0372340:CDS 55.0%
GGTCGATACTACGATAGCCG+AGG + chr3_1:70769500-70769519 Msa0372340:intron 55.0%
GAAAGGGGTCGAAGCTAAGG+CGG + chr3_1:70769541-70769560 Msa0372340:CDS 55.0%
ATACCTCACCGCCCTCATCT+TGG - chr3_1:70769640-70769659 None:intergenic 55.0%
! GGTGTGATGTTGGCTACCCT+AGG + chr3_1:70769945-70769964 Msa0372340:CDS 55.0%
GAGTCTCAGTTAGGGCAACC+TGG + chr3_1:70770034-70770053 Msa0372340:CDS 55.0%
! GTTAGGGCAACCTGGGTTAG+AGG + chr3_1:70770042-70770061 Msa0372340:CDS 55.0%
!! GAACGAATTCCAAGCACCGG+AGG - chr3_1:70770320-70770339 None:intergenic 55.0%
GTCGAAGCTAAGGCGGCAAG+AGG + chr3_1:70769548-70769567 Msa0372340:CDS 60.0%
!! AGAAGAGTGCCTCCGGTGCT+TGG + chr3_1:70770308-70770327 Msa0372340:three_prime_UTR 60.0%
GCGCGGTCTGTCTAGCACTG+AGG + chr3_1:70768800-70768819 Msa0372340:CDS 65.0%
GAGCCAAGATGAGGGCGGTG+AGG + chr3_1:70769634-70769653 Msa0372340:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 70767103 70770355 70767103 ID=Msa0372340;Name=Msa0372340
chr3_1 mRNA 70767103 70770355 70767103 ID=Msa0372340-mRNA-1;Parent=Msa0372340;Name=Msa0372340-mRNA-1;_AED=0.13;_eAED=0.13;_QI=36|0.85|0.87|1|1|1|8|247|226
chr3_1 exon 70767103 70767234 70767103 ID=Msa0372340-mRNA-1:exon:15437;Parent=Msa0372340-mRNA-1
chr3_1 exon 70767373 70767449 70767373 ID=Msa0372340-mRNA-1:exon:15438;Parent=Msa0372340-mRNA-1
chr3_1 exon 70767683 70767754 70767683 ID=Msa0372340-mRNA-1:exon:15439;Parent=Msa0372340-mRNA-1
chr3_1 exon 70767873 70767910 70767873 ID=Msa0372340-mRNA-1:exon:15440;Parent=Msa0372340-mRNA-1
chr3_1 exon 70768778 70768821 70768778 ID=Msa0372340-mRNA-1:exon:15441;Parent=Msa0372340-mRNA-1
chr3_1 exon 70768954 70769000 70768954 ID=Msa0372340-mRNA-1:exon:15442;Parent=Msa0372340-mRNA-1
chr3_1 exon 70769517 70769655 70769517 ID=Msa0372340-mRNA-1:exon:15443;Parent=Msa0372340-mRNA-1
chr3_1 exon 70769941 70770355 70769941 ID=Msa0372340-mRNA-1:exon:15444;Parent=Msa0372340-mRNA-1
chr3_1 five_prime_UTR 70767103 70767138 70767103 ID=Msa0372340-mRNA-1:five_prime_utr;Parent=Msa0372340-mRNA-1
chr3_1 CDS 70767139 70767234 70767139 ID=Msa0372340-mRNA-1:cds;Parent=Msa0372340-mRNA-1
chr3_1 CDS 70767373 70767449 70767373 ID=Msa0372340-mRNA-1:cds;Parent=Msa0372340-mRNA-1
chr3_1 CDS 70767683 70767754 70767683 ID=Msa0372340-mRNA-1:cds;Parent=Msa0372340-mRNA-1
chr3_1 CDS 70767873 70767910 70767873 ID=Msa0372340-mRNA-1:cds;Parent=Msa0372340-mRNA-1
chr3_1 CDS 70768778 70768821 70768778 ID=Msa0372340-mRNA-1:cds;Parent=Msa0372340-mRNA-1
chr3_1 CDS 70768954 70769000 70768954 ID=Msa0372340-mRNA-1:cds;Parent=Msa0372340-mRNA-1
chr3_1 CDS 70769517 70769655 70769517 ID=Msa0372340-mRNA-1:cds;Parent=Msa0372340-mRNA-1
chr3_1 CDS 70769941 70770108 70769941 ID=Msa0372340-mRNA-1:cds;Parent=Msa0372340-mRNA-1
chr3_1 three_prime_UTR 70770109 70770355 70770109 ID=Msa0372340-mRNA-1:three_prime_utr;Parent=Msa0372340-mRNA-1
Gene Sequence

>Msa0372340

ATGACTTTAAAGACACTAGCAACTTCTCCTATTACCGGTTTTGCTCTTTTCGTCCTTTTCCTTGCTCTTCTTCTCCGATTTTCCATCACTTCACAGAAATTGTTCACTACTGAAGAGCTTGCATTGTTCAATGGAACTGATCCAGGGTTGCCAATCCTTATAGGAATTCTTGGGTCTGTGTTTGATGTAACTAAGGGAAAATCACATTATGGTCCAGGAGGAGGTTATCATCACTTTGCTGGAAGGGATGCTTCTCGCGCTTTCTTCTCTGGAAATTTCACAGGAGATGGACTCACTGACTCATTGCGCGGTCTGTCTAGCACTGAGGTCAAGAGTGTAGTTGACTGGAGGGGTTTCTACTTAAGATCTTACAACCGAGGGAATCCTACAAAATATTTGAAAGGGGTCGAAGCTAAGGCGGCAAGAGGTGCTCAGCTTCTAGAAAAGCAGAAGATTGAAGAGGCTAAACAACCTCAATGCAGTTCAAAATGGAGCCAAGATGAGGGCGGTGAGGTATGGTGTGATGTTGGCTACCCTAGGTTGGTTAAGAGGCCACTAGAAATTGCTTTGACCGGGAAGATGAGTAAGCGTTGTGCTTGCTTTGAAGAGTCTCAGTTAGGGCAACCTGGGTTAGAGGTATATGAAGGTTGTGACTACAATGCAAACAGATGCAAAGTTTAA

Protein sequence

>Msa0372340

MTLKTLATSPITGFALFVLFLALLLRFSITSQKLFTTEELALFNGTDPGLPILIGILGSVFDVTKGKSHYGPGGGYHHFAGRDASRAFFSGNFTGDGLTDSLRGLSSTEVKSVVDWRGFYLRSYNRGNPTKYLKGVEAKAARGAQLLEKQKIEEAKQPQCSSKWSQDEGGEVWCDVGYPRLVKRPLEIALTGKMSKRCACFEESQLGQPGLEVYEGCDYNANRCKV*