Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545080 | KEH30077.1 | 95.547 | 247 | 10 | 1 | 1 | 247 | 1 | 246 | 1.18e-150 | 435 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545080 | sp|Q9SK03|RAP27_ARATH | 67.528 | 271 | 61 | 9 | 1 | 247 | 1 | 268 | 1.35e-91 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545080 | A0A072UK49 | 95.547 | 247 | 10 | 1 | 1 | 247 | 1 | 246 | 5.63e-151 | 435 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0545080 | TF | AP2/ERF-ERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa0545080 | -0.816518 | 5.307842e-52 | -8.615850e-47 |
| Msa0018070 | Msa0545080 | 0.820567 | 6.406773e-53 | -8.615850e-47 |
| Msa0023000 | Msa0545080 | 0.827898 | 1.213376e-54 | -8.615850e-47 |
| Msa0032610 | Msa0545080 | 0.801107 | 1.052246e-48 | -8.615850e-47 |
| Msa0052030 | Msa0545080 | 0.806853 | 6.721889e-50 | -8.615850e-47 |
| Msa0052400 | Msa0545080 | 0.814592 | 1.424154e-51 | -8.615850e-47 |
| Msa0058300 | Msa0545080 | 0.824351 | 8.459318e-54 | -8.615850e-47 |
| Msa0061150 | Msa0545080 | 0.802514 | 5.411079e-49 | -8.615850e-47 |
| Msa0065950 | Msa0545080 | 0.825576 | 4.346457e-54 | -8.615850e-47 |
| Msa0089820 | Msa0545080 | 0.805833 | 1.102806e-49 | -8.615850e-47 |
| Msa0091570 | Msa0545080 | 0.859124 | 5.139336e-63 | -8.615850e-47 |
| Msa0105700 | Msa0545080 | 0.802827 | 4.663914e-49 | -8.615850e-47 |
| Msa0109590 | Msa0545080 | 0.805245 | 1.464807e-49 | -8.615850e-47 |
| Msa0115270 | Msa0545080 | 0.827882 | 1.223675e-54 | -8.615850e-47 |
| Msa0115390 | Msa0545080 | 0.859074 | 5.320142e-63 | -8.615850e-47 |
| Msa0118540 | Msa0545080 | 0.834615 | 2.706281e-56 | -8.615850e-47 |
| Msa0145730 | Msa0545080 | 0.834233 | 3.374996e-56 | -8.615850e-47 |
| Msa0152170 | Msa0545080 | 0.811949 | 5.419948e-51 | -8.615850e-47 |
| Msa0159340 | Msa0545080 | 0.813857 | 2.069508e-51 | -8.615850e-47 |
| Msa0165220 | Msa0545080 | 0.802268 | 6.080130e-49 | -8.615850e-47 |
| Msa0172780 | Msa0545080 | 0.834079 | 3.687535e-56 | -8.615850e-47 |
| Msa0183460 | Msa0545080 | 0.800696 | 1.276684e-48 | -8.615850e-47 |
| Msa0194480 | Msa0545080 | 0.804446 | 2.152212e-49 | -8.615850e-47 |
| Msa0208220 | Msa0545080 | 0.808210 | 3.464462e-50 | -8.615850e-47 |
| Msa0208350 | Msa0545080 | 0.828838 | 7.196070e-55 | -8.615850e-47 |
| Msa0236270 | Msa0545080 | 0.801336 | 9.446044e-49 | -8.615850e-47 |
| Msa0369220 | Msa0545080 | 0.806360 | 8.544337e-50 | -8.615850e-47 |
| Msa0372340 | Msa0545080 | 0.856336 | 3.445596e-62 | -8.615850e-47 |
| Msa0380040 | Msa0545080 | 0.823147 | 1.620068e-53 | -8.615850e-47 |
| Msa0386040 | Msa0545080 | 0.805314 | 1.417051e-49 | -8.615850e-47 |
| Msa0387750 | Msa0545080 | 0.813461 | 2.530476e-51 | -8.615850e-47 |
| Msa0387910 | Msa0545080 | 0.800104 | 1.685651e-48 | -8.615850e-47 |
| Msa0389810 | Msa0545080 | 0.805186 | 1.507474e-49 | -8.615850e-47 |
| Msa0394340 | Msa0545080 | 0.809093 | 2.243684e-50 | -8.615850e-47 |
| Msa0412840 | Msa0545080 | 0.803372 | 3.598181e-49 | -8.615850e-47 |
| Msa0420560 | Msa0545080 | 0.803742 | 3.015326e-49 | -8.615850e-47 |
| Msa0421780 | Msa0545080 | -0.801029 | 1.091937e-48 | -8.615850e-47 |
| Msa0429290 | Msa0545080 | 0.835720 | 1.424040e-56 | -8.615850e-47 |
| Msa0429950 | Msa0545080 | 0.834505 | 2.883723e-56 | -8.615850e-47 |
| Msa0435690 | Msa0545080 | 0.810345 | 1.206903e-50 | -8.615850e-47 |
| Msa0436190 | Msa0545080 | 0.801640 | 8.184125e-49 | -8.615850e-47 |
| Msa0442200 | Msa0545080 | 0.838581 | 2.641512e-57 | -8.615850e-47 |
| Msa0457510 | Msa0545080 | 0.803218 | 3.871458e-49 | -8.615850e-47 |
| Msa0467220 | Msa0545080 | 0.801524 | 8.645258e-49 | -8.615850e-47 |
| Msa0467960 | Msa0545080 | -0.801505 | 8.723264e-49 | -8.615850e-47 |
| Msa0468130 | Msa0545080 | 0.808080 | 3.692190e-50 | -8.615850e-47 |
| Msa0475580 | Msa0545080 | 0.827980 | 1.158966e-54 | -8.615850e-47 |
| Msa0256330 | Msa0545080 | 0.816772 | 4.654855e-52 | -8.615850e-47 |
| Msa0257500 | Msa0545080 | 0.800155 | 1.645574e-48 | -8.615850e-47 |
| Msa0269810 | Msa0545080 | 0.804344 | 2.259877e-49 | -8.615850e-47 |
| Msa0271360 | Msa0545080 | 0.819706 | 1.008607e-52 | -8.615850e-47 |
| Msa0295330 | Msa0545080 | 0.818215 | 2.202102e-52 | -8.615850e-47 |
| Msa0298700 | Msa0545080 | 0.810385 | 1.183303e-50 | -8.615850e-47 |
| Msa0347610 | Msa0545080 | 0.833464 | 5.254948e-56 | -8.615850e-47 |
| Msa0489610 | Msa0545080 | 0.837384 | 5.366771e-57 | -8.615850e-47 |
| Msa0500720 | Msa0545080 | 0.835043 | 2.111384e-56 | -8.615850e-47 |
| Msa0508870 | Msa0545080 | 0.814629 | 1.397874e-51 | -8.615850e-47 |
| Msa0512750 | Msa0545080 | 0.800124 | 1.669826e-48 | -8.615850e-47 |
| Msa0519220 | Msa0545080 | 0.833148 | 6.299439e-56 | -8.615850e-47 |
| Msa0524290 | Msa0545080 | 0.800753 | 1.242890e-48 | -8.615850e-47 |
| Msa0534900 | Msa0545080 | 0.814300 | 1.652364e-51 | -8.615850e-47 |
| Msa0545080 | Msa0553220 | -0.806584 | 7.661418e-50 | -8.615850e-47 |
| Msa0545080 | Msa0557480 | 0.824427 | 8.117906e-54 | -8.615850e-47 |
| Msa0545080 | Msa0587030 | 0.821300 | 4.343666e-53 | -8.615850e-47 |
| Msa0545080 | Msa0607510 | 0.800591 | 1.341413e-48 | -8.615850e-47 |
| Msa0545080 | Msa0608160 | 0.800860 | 1.181914e-48 | -8.615850e-47 |
| Msa0545080 | Msa0610430 | 0.804140 | 2.491843e-49 | -8.615850e-47 |
| Msa0545080 | Msa0616240 | 0.839737 | 1.324446e-57 | -8.615850e-47 |
| Msa0545080 | Msa0626030 | 0.800627 | 1.318829e-48 | -8.615850e-47 |
| Msa0545080 | Msa0626850 | 0.807369 | 5.227518e-50 | -8.615850e-47 |
| Msa0545080 | Msa0632870 | 0.816703 | 4.824178e-52 | -8.615850e-47 |
| Msa0545080 | Msa0643320 | 0.802672 | 5.020612e-49 | -8.615850e-47 |
| Msa0545080 | Msa0650190 | 0.802480 | 5.500441e-49 | -8.615850e-47 |
| Msa0545080 | Msa0661710 | 0.805163 | 1.524535e-49 | -8.615850e-47 |
| Msa0545080 | Msa0663920 | 0.809147 | 2.184105e-50 | -8.615850e-47 |
| Msa0545080 | Msa0664970 | 0.814129 | 1.802941e-51 | -8.615850e-47 |
| Msa0545080 | Msa0673470 | 0.808635 | 2.810740e-50 | -8.615850e-47 |
| Msa0545080 | Msa0677770 | 0.800141 | 1.656623e-48 | -8.615850e-47 |
| Msa0545080 | Msa0683300 | 0.856315 | 3.496162e-62 | -8.615850e-47 |
| Msa0545080 | Msa0683600 | 0.810976 | 8.818537e-51 | -8.615850e-47 |
| Msa0545080 | Msa0692830 | 0.800491 | 1.405879e-48 | -8.615850e-47 |
| Msa0545080 | Msa0699570 | 0.843305 | 1.520654e-58 | -8.615850e-47 |
| Msa0545080 | Msa0723110 | 0.803952 | 2.726194e-49 | -8.615850e-47 |
| Msa0545080 | Msa0737600 | 0.802528 | 5.374374e-49 | -8.615850e-47 |
| Msa0545080 | Msa0747260 | 0.820635 | 6.179349e-53 | -8.615850e-47 |
| Msa0545080 | Msa0780240 | 0.801605 | 8.321065e-49 | -8.615850e-47 |
| Msa0545080 | Msa0784860 | 0.867024 | 1.855695e-65 | -8.615850e-47 |
| Msa0545080 | Msa0793380 | 0.822295 | 2.556794e-53 | -8.615850e-47 |
| Msa0545080 | Msa0816730 | 0.824704 | 6.986925e-54 | -8.615850e-47 |
| Msa0545080 | Msa0824680 | 0.803541 | 3.319086e-49 | -8.615850e-47 |
| Msa0545080 | Msa0843250 | 0.800505 | 1.396709e-48 | -8.615850e-47 |
| Msa0545080 | Msa0847080 | 0.808405 | 3.148321e-50 | -8.615850e-47 |
| Msa0545080 | Msa0870150 | 0.820772 | 5.748534e-53 | -8.615850e-47 |
| Msa0545080 | Msa0899640 | 0.815097 | 1.100526e-51 | -8.615850e-47 |
| Msa0545080 | Msa0933290 | 0.823657 | 1.231236e-53 | -8.615850e-47 |
| Msa0545080 | Msa0935850 | 0.814741 | 1.320502e-51 | -8.615850e-47 |
| Msa0545080 | Msa0937330 | 0.802065 | 6.696125e-49 | -8.615850e-47 |
| Msa0545080 | Msa0944830 | 0.802351 | 5.845394e-49 | -8.615850e-47 |
| Msa0545080 | Msa0944870 | 0.838261 | 3.193927e-57 | -8.615850e-47 |
| Msa0545080 | Msa0982270 | 0.808997 | 2.352164e-50 | -8.615850e-47 |
| Msa0545080 | Msa0992490 | -0.810476 | 1.131138e-50 | -8.615850e-47 |
| Msa0545080 | Msa0996170 | 0.809596 | 1.750160e-50 | -8.615850e-47 |
| Msa0545080 | Msa0999430 | 0.820553 | 6.454128e-53 | -8.615850e-47 |
| Msa0545080 | Msa1012830 | 0.843229 | 1.593643e-58 | -8.615850e-47 |
| Msa0545080 | Msa1023180 | 0.809847 | 1.545371e-50 | -8.615850e-47 |
| Msa0545080 | Msa1037420 | 0.828121 | 1.071913e-54 | -8.615850e-47 |
| Msa0545080 | Msa1043050 | 0.815070 | 1.116141e-51 | -8.615850e-47 |
| Msa0545080 | Msa1051200 | 0.808976 | 2.376932e-50 | -8.615850e-47 |
| Msa0545080 | Msa1088290 | 0.800036 | 1.739556e-48 | -8.615850e-47 |
| Msa0545080 | Msa1094430 | 0.811915 | 5.512302e-51 | -8.615850e-47 |
| Msa0545080 | Msa1123810 | 0.812624 | 3.860474e-51 | -8.615850e-47 |
| Msa0545080 | Msa1126120 | -0.802042 | 6.766678e-49 | -8.615850e-47 |
| Msa0545080 | Msa1129550 | 0.800773 | 1.231456e-48 | -8.615850e-47 |
| Msa0545080 | Msa1133230 | 0.818580 | 1.820054e-52 | -8.615850e-47 |
| Msa0545080 | Msa1133250 | 0.821739 | 3.440301e-53 | -8.615850e-47 |
| Msa0545080 | Msa1137700 | 0.816934 | 4.281922e-52 | -8.615850e-47 |
| Msa0545080 | Msa1143930 | -0.817747 | 2.808847e-52 | -8.615850e-47 |
| Msa0545080 | Msa1150710 | 0.812170 | 4.849840e-51 | -8.615850e-47 |
| Msa0545080 | Msa1171870 | 0.821111 | 4.802797e-53 | -8.615850e-47 |
| Msa0545080 | Msa1217430 | -0.809160 | 2.170475e-50 | -8.615850e-47 |
| Msa0545080 | Msa1224810 | 0.845001 | 5.332130e-59 | -8.615850e-47 |
| Msa0545080 | Msa1230080 | 0.803166 | 3.969419e-49 | -8.615850e-47 |
| Msa0545080 | Msa1231840 | 0.800070 | 1.712394e-48 | -8.615850e-47 |
| Msa0545080 | Msa1267260 | 0.806655 | 7.403606e-50 | -8.615850e-47 |
| Msa0545080 | Msa1274560 | 0.808207 | 3.469755e-50 | -8.615850e-47 |
| Msa0545080 | Msa1302190 | -0.816658 | 4.935857e-52 | -8.615850e-47 |
| Msa0545080 | Msa1306430 | 0.821668 | 3.572329e-53 | -8.615850e-47 |
| Msa0545080 | Msa1307740 | 0.802842 | 4.630577e-49 | -8.615850e-47 |
| Msa0545080 | Msa1310400 | 0.802223 | 6.213071e-49 | -8.615850e-47 |
| Msa0545080 | Msa1312520 | 0.802849 | 4.614088e-49 | -8.615850e-47 |
| Msa0545080 | Msa1358670 | 0.812090 | 5.050248e-51 | -8.615850e-47 |
| Msa0545080 | Msa1364940 | 0.800352 | 1.500258e-48 | -8.615850e-47 |
| Msa0545080 | Msa1367490 | 0.813208 | 2.875723e-51 | -8.615850e-47 |
| Msa0545080 | Msa1392160 | -0.808828 | 2.556112e-50 | -8.615850e-47 |
| Msa0545080 | Msa1403340 | 0.803574 | 3.266879e-49 | -8.615850e-47 |
| Msa0545080 | Msa1417570 | 0.801275 | 9.724076e-49 | -8.615850e-47 |
| Msa0545080 | Msa1424620 | 0.808316 | 3.288825e-50 | -8.615850e-47 |
| Msa0545080 | Msa1448630 | 0.803020 | 4.254225e-49 | -8.615850e-47 |
| Msa0545080 | Msa1454950 | 0.830117 | 3.518241e-55 | -8.615850e-47 |
| Msa0545080 | Msa1460320 | -0.804704 | 1.901170e-49 | -8.615850e-47 |
| Msa0545080 | Msa1465960 | 0.837751 | 4.321211e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545080 | MtrunA17_Chr4g0030191 | 95.547 | 247 | 10 | 1 | 1 | 247 | 1 | 246 | 7.53e-154 | 436 |
| Msa0545080 | MtrunA17_Chr2g0325911 | 65.649 | 262 | 62 | 8 | 1 | 247 | 1 | 249 | 7.97e-92 | 277 |
| Msa0545080 | MtrunA17_Chr7g0263581 | 60.902 | 266 | 73 | 6 | 1 | 247 | 1 | 254 | 4.13e-79 | 245 |
| Msa0545080 | MtrunA17_Chr5g0401891 | 62.780 | 223 | 66 | 3 | 42 | 247 | 45 | 267 | 2.45e-70 | 224 |
| Msa0545080 | MtrunA17_Chr5g0401891 | 53.425 | 73 | 30 | 4 | 126 | 196 | 239 | 309 | 1.81e-11 | 63.5 |
| Msa0545080 | MtrunA17_Chr4g0053181 | 62.150 | 214 | 71 | 3 | 42 | 247 | 80 | 291 | 2.48e-65 | 211 |
| Msa0545080 | MtrunA17_Chr4g0053181 | 53.425 | 73 | 30 | 4 | 126 | 196 | 263 | 333 | 1.59e-11 | 63.5 |
| Msa0545080 | MtrunA17_Chr1g0170761 | 50.787 | 254 | 100 | 8 | 1 | 240 | 3 | 245 | 1.91e-58 | 189 |
| Msa0545080 | MtrunA17_Chr3g0126151 | 94.872 | 78 | 4 | 0 | 170 | 247 | 47 | 124 | 1.77e-48 | 156 |
| Msa0545080 | MtrunA17_Chr4g0054351 | 53.077 | 130 | 50 | 3 | 129 | 247 | 310 | 439 | 6.18e-41 | 148 |
| Msa0545080 | MtrunA17_Chr4g0054351 | 45.745 | 94 | 46 | 2 | 105 | 193 | 385 | 478 | 1.46e-14 | 72.8 |
| Msa0545080 | MtrunA17_Chr5g0400871 | 53.077 | 130 | 50 | 3 | 129 | 247 | 249 | 378 | 2.83e-39 | 142 |
| Msa0545080 | MtrunA17_Chr5g0400871 | 40.566 | 106 | 53 | 3 | 93 | 193 | 317 | 417 | 2.56e-13 | 68.9 |
| Msa0545080 | MtrunA17_Chr4g0072291 | 50.769 | 130 | 53 | 3 | 129 | 247 | 159 | 288 | 7.85e-38 | 138 |
| Msa0545080 | MtrunA17_Chr4g0072291 | 50.000 | 66 | 31 | 1 | 130 | 193 | 262 | 327 | 1.91e-12 | 66.2 |
| Msa0545080 | MtrunA17_Chr5g0412151 | 51.538 | 130 | 52 | 3 | 129 | 247 | 224 | 353 | 1.77e-37 | 137 |
| Msa0545080 | MtrunA17_Chr7g0216601 | 50.000 | 130 | 54 | 2 | 129 | 247 | 65 | 194 | 2.90e-37 | 135 |
| Msa0545080 | MtrunA17_Chr7g0216601 | 42.529 | 87 | 48 | 1 | 131 | 215 | 169 | 255 | 1.78e-13 | 69.3 |
| Msa0545080 | MtrunA17_Chr7g0249621 | 49.231 | 130 | 55 | 3 | 129 | 247 | 259 | 388 | 1.06e-36 | 136 |
| Msa0545080 | MtrunA17_Chr7g0249621 | 45.055 | 91 | 45 | 2 | 108 | 193 | 337 | 427 | 9.96e-14 | 70.5 |
| Msa0545080 | MtrunA17_Chr3g0135161 | 51.181 | 127 | 54 | 3 | 129 | 247 | 310 | 436 | 1.38e-36 | 136 |
| Msa0545080 | MtrunA17_Chr3g0135161 | 41.509 | 106 | 52 | 3 | 93 | 193 | 375 | 475 | 3.57e-14 | 71.6 |
| Msa0545080 | MtrunA17_Chr4g0032631 | 48.462 | 130 | 56 | 3 | 129 | 247 | 163 | 292 | 3.21e-36 | 134 |
| Msa0545080 | MtrunA17_Chr4g0032631 | 37.838 | 111 | 59 | 3 | 88 | 193 | 226 | 331 | 3.59e-13 | 68.6 |
| Msa0545080 | MtrunA17_Chr8g0343851 | 51.181 | 127 | 54 | 3 | 129 | 247 | 248 | 374 | 1.23e-35 | 133 |
| Msa0545080 | MtrunA17_Chr8g0343851 | 45.055 | 91 | 45 | 2 | 108 | 193 | 323 | 413 | 3.81e-13 | 68.6 |
| Msa0545080 | MtrunA17_Chr1g0152161 | 48.819 | 127 | 57 | 3 | 129 | 247 | 312 | 438 | 1.13e-34 | 130 |
| Msa0545080 | MtrunA17_Chr1g0152161 | 40.196 | 102 | 56 | 2 | 97 | 193 | 376 | 477 | 3.85e-14 | 71.6 |
| Msa0545080 | MtrunA17_Chr4g0073521 | 48.529 | 136 | 56 | 4 | 123 | 247 | 41 | 173 | 7.29e-34 | 125 |
| Msa0545080 | MtrunA17_Chr4g0073521 | 46.377 | 69 | 35 | 1 | 131 | 197 | 148 | 216 | 3.73e-11 | 62.4 |
| Msa0545080 | MtrunA17_Chr8g0355191 | 48.592 | 142 | 59 | 3 | 117 | 247 | 43 | 181 | 3.33e-33 | 124 |
| Msa0545080 | MtrunA17_Chr8g0355191 | 47.436 | 78 | 39 | 1 | 131 | 206 | 156 | 233 | 9.52e-14 | 70.1 |
| Msa0545080 | MtrunA17_Chr2g0328971 | 43.537 | 147 | 69 | 4 | 112 | 247 | 150 | 293 | 1.22e-32 | 124 |
| Msa0545080 | MtrunA17_Chr2g0328971 | 45.055 | 91 | 45 | 2 | 108 | 193 | 242 | 332 | 1.50e-13 | 69.7 |
| Msa0545080 | MtrunA17_Chr4g0002011 | 52.206 | 136 | 54 | 3 | 123 | 247 | 30 | 165 | 2.44e-32 | 120 |
| Msa0545080 | MtrunA17_Chr4g0002011 | 46.875 | 64 | 32 | 1 | 131 | 192 | 140 | 203 | 8.72e-11 | 60.8 |
| Msa0545080 | MtrunA17_Chr8g0355181 | 48.551 | 138 | 63 | 2 | 118 | 247 | 45 | 182 | 2.45e-30 | 116 |
| Msa0545080 | MtrunA17_Chr8g0355181 | 45.455 | 77 | 40 | 2 | 131 | 205 | 157 | 233 | 8.27e-13 | 67.4 |
| Msa0545080 | MtrunA17_Chr6g0452911 | 45.113 | 133 | 55 | 4 | 133 | 247 | 65 | 197 | 6.74e-30 | 115 |
| Msa0545080 | MtrunA17_Chr6g0452911 | 34.437 | 151 | 88 | 5 | 92 | 231 | 130 | 280 | 1.33e-12 | 66.6 |
| Msa0545080 | MtrunA17_Chr8g0367311 | 54.839 | 93 | 41 | 1 | 156 | 247 | 19 | 111 | 2.43e-28 | 108 |
| Msa0545080 | MtrunA17_Chr8g0367311 | 39.423 | 104 | 58 | 2 | 97 | 195 | 49 | 152 | 1.33e-11 | 62.8 |
| Msa0545080 | MtrunA17_Chr7g0257361 | 51.181 | 127 | 48 | 2 | 129 | 245 | 57 | 179 | 8.45e-28 | 109 |
| Msa0545080 | MtrunA17_Chr8g0362541 | 48.031 | 127 | 58 | 2 | 129 | 247 | 69 | 195 | 8.46e-26 | 104 |
| Msa0545080 | MtrunA17_Chr2g0305821 | 46.032 | 126 | 56 | 3 | 118 | 231 | 31 | 156 | 6.58e-21 | 86.3 |
| Msa0545080 | MtrunA17_Chr8g0375031 | 50.000 | 74 | 30 | 3 | 132 | 199 | 124 | 196 | 8.03e-12 | 63.2 |
| Msa0545080 | MtrunA17_Chr4g0044881 | 48.000 | 75 | 34 | 3 | 127 | 199 | 108 | 179 | 1.44e-11 | 62.4 |
| Msa0545080 | MtrunA17_Chr5g0422501 | 40.404 | 99 | 51 | 4 | 121 | 215 | 98 | 192 | 2.59e-11 | 62.8 |
| Msa0545080 | MtrunA17_Chr4g0044911 | 46.667 | 75 | 35 | 3 | 133 | 205 | 96 | 167 | 5.74e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545080 | AT2G28550.2 | 67.528 | 271 | 61 | 9 | 1 | 247 | 1 | 268 | 6.66e-95 | 279 |
| Msa0545080 | AT2G28550.6 | 67.528 | 271 | 61 | 9 | 1 | 247 | 1 | 268 | 6.66e-95 | 279 |
| Msa0545080 | AT2G28550.4 | 67.528 | 271 | 61 | 9 | 1 | 247 | 1 | 268 | 4.86e-94 | 280 |
| Msa0545080 | AT2G28550.1 | 67.528 | 271 | 61 | 9 | 1 | 247 | 1 | 268 | 1.38e-92 | 280 |
| Msa0545080 | AT2G28550.3 | 67.528 | 271 | 61 | 9 | 1 | 247 | 1 | 268 | 1.66e-92 | 280 |
| Msa0545080 | AT5G60120.6 | 55.273 | 275 | 91 | 7 | 1 | 245 | 1 | 273 | 3.25e-79 | 246 |
| Msa0545080 | AT5G60120.4 | 55.072 | 276 | 90 | 8 | 1 | 245 | 1 | 273 | 4.45e-79 | 244 |
| Msa0545080 | AT5G60120.3 | 55.072 | 276 | 90 | 8 | 1 | 245 | 1 | 273 | 4.45e-79 | 244 |
| Msa0545080 | AT5G60120.5 | 55.072 | 276 | 90 | 8 | 1 | 245 | 1 | 273 | 4.45e-79 | 244 |
| Msa0545080 | AT5G60120.1 | 55.273 | 275 | 91 | 7 | 1 | 245 | 1 | 273 | 4.94e-79 | 246 |
| Msa0545080 | AT5G60120.2 | 55.273 | 275 | 91 | 7 | 1 | 245 | 1 | 273 | 1.22e-78 | 246 |
| Msa0545080 | AT4G36920.1 | 69.841 | 189 | 43 | 2 | 73 | 247 | 58 | 246 | 3.08e-71 | 224 |
| Msa0545080 | AT4G36920.1 | 53.425 | 73 | 30 | 4 | 126 | 196 | 218 | 288 | 1.99e-11 | 63.5 |
| Msa0545080 | AT4G36920.2 | 69.841 | 189 | 43 | 2 | 73 | 247 | 58 | 246 | 3.08e-71 | 224 |
| Msa0545080 | AT4G36920.2 | 53.425 | 73 | 30 | 4 | 126 | 196 | 218 | 288 | 1.99e-11 | 63.5 |
| Msa0545080 | AT5G67180.4 | 70.115 | 174 | 47 | 2 | 76 | 247 | 41 | 211 | 4.67e-63 | 198 |
| Msa0545080 | AT5G67180.2 | 70.690 | 174 | 46 | 3 | 76 | 247 | 41 | 211 | 5.09e-63 | 199 |
| Msa0545080 | AT5G67180.1 | 70.115 | 174 | 47 | 2 | 76 | 247 | 41 | 211 | 7.24e-63 | 201 |
| Msa0545080 | AT5G67180.3 | 70.690 | 174 | 46 | 3 | 76 | 247 | 41 | 211 | 8.78e-63 | 198 |
| Msa0545080 | AT2G39250.2 | 75.676 | 111 | 27 | 0 | 120 | 230 | 96 | 206 | 1.48e-48 | 160 |
| Msa0545080 | AT2G39250.1 | 75.789 | 95 | 23 | 0 | 132 | 226 | 108 | 202 | 5.90e-48 | 161 |
| Msa0545080 | AT3G54990.2 | 50.204 | 245 | 98 | 5 | 1 | 238 | 1 | 228 | 3.27e-47 | 157 |
| Msa0545080 | AT3G54990.1 | 56.477 | 193 | 71 | 3 | 54 | 239 | 43 | 229 | 2.74e-46 | 157 |
| Msa0545080 | AT2G28550.5 | 81.818 | 99 | 18 | 0 | 149 | 247 | 4 | 102 | 7.24e-44 | 149 |
| Msa0545080 | AT5G57390.2 | 46.405 | 153 | 71 | 3 | 106 | 247 | 59 | 211 | 8.41e-40 | 142 |
| Msa0545080 | AT5G57390.2 | 40.179 | 112 | 57 | 3 | 87 | 193 | 144 | 250 | 5.16e-14 | 71.2 |
| Msa0545080 | AT1G72570.1 | 45.783 | 166 | 70 | 5 | 100 | 247 | 186 | 349 | 9.68e-40 | 142 |
| Msa0545080 | AT1G72570.1 | 51.515 | 66 | 30 | 1 | 130 | 193 | 323 | 388 | 7.62e-13 | 67.8 |
| Msa0545080 | AT5G57390.1 | 46.405 | 153 | 71 | 3 | 106 | 247 | 177 | 329 | 2.56e-39 | 143 |
| Msa0545080 | AT5G57390.1 | 40.179 | 112 | 57 | 3 | 87 | 193 | 262 | 368 | 5.38e-14 | 71.6 |
| Msa0545080 | AT1G51190.1 | 38.785 | 214 | 104 | 6 | 45 | 247 | 119 | 316 | 4.30e-38 | 140 |
| Msa0545080 | AT1G51190.1 | 39.640 | 111 | 57 | 3 | 88 | 193 | 250 | 355 | 9.78e-14 | 70.9 |
| Msa0545080 | AT5G65510.3 | 51.538 | 130 | 52 | 3 | 129 | 247 | 170 | 299 | 6.45e-38 | 135 |
| Msa0545080 | AT3G20840.1 | 49.231 | 130 | 55 | 3 | 129 | 247 | 178 | 307 | 2.52e-37 | 138 |
| Msa0545080 | AT3G20840.1 | 46.154 | 91 | 44 | 2 | 108 | 193 | 256 | 346 | 6.15e-14 | 71.2 |
| Msa0545080 | AT5G65510.4 | 51.538 | 130 | 52 | 3 | 129 | 247 | 170 | 299 | 2.97e-37 | 136 |
| Msa0545080 | AT5G65510.2 | 51.538 | 130 | 52 | 3 | 129 | 247 | 228 | 357 | 3.23e-37 | 137 |
| Msa0545080 | AT5G65510.1 | 51.538 | 130 | 52 | 3 | 129 | 247 | 228 | 357 | 3.23e-37 | 137 |
| Msa0545080 | AT4G37750.1 | 50.000 | 130 | 54 | 2 | 129 | 247 | 280 | 409 | 3.52e-37 | 137 |
| Msa0545080 | AT4G37750.1 | 37.500 | 136 | 69 | 5 | 88 | 216 | 343 | 469 | 2.59e-13 | 69.3 |
| Msa0545080 | AT5G10510.7 | 50.769 | 130 | 53 | 3 | 129 | 247 | 227 | 356 | 8.71e-37 | 136 |
| Msa0545080 | AT5G10510.5 | 50.769 | 130 | 53 | 3 | 129 | 247 | 227 | 356 | 8.71e-37 | 136 |
| Msa0545080 | AT5G10510.6 | 50.769 | 130 | 53 | 3 | 129 | 247 | 265 | 394 | 1.01e-36 | 136 |
| Msa0545080 | AT5G10510.4 | 50.769 | 130 | 53 | 3 | 129 | 247 | 265 | 394 | 1.01e-36 | 136 |
| Msa0545080 | AT5G10510.1 | 50.769 | 130 | 53 | 3 | 129 | 247 | 250 | 379 | 1.16e-36 | 136 |
| Msa0545080 | AT5G17430.2 | 50.000 | 130 | 54 | 3 | 129 | 247 | 145 | 274 | 1.17e-36 | 135 |
| Msa0545080 | AT5G17430.2 | 45.055 | 91 | 45 | 2 | 108 | 193 | 223 | 313 | 4.59e-13 | 68.6 |
| Msa0545080 | AT5G17430.1 | 50.000 | 130 | 54 | 3 | 129 | 247 | 207 | 336 | 1.22e-36 | 136 |
| Msa0545080 | AT5G17430.1 | 45.055 | 91 | 45 | 2 | 108 | 193 | 285 | 375 | 3.85e-13 | 68.9 |
| Msa0545080 | AT3G54320.3 | 50.769 | 130 | 53 | 2 | 129 | 247 | 62 | 191 | 2.16e-35 | 130 |
| Msa0545080 | AT3G54320.1 | 50.769 | 130 | 53 | 2 | 129 | 247 | 62 | 191 | 3.27e-35 | 130 |
| Msa0545080 | AT1G79700.2 | 52.555 | 137 | 54 | 2 | 122 | 247 | 42 | 178 | 2.24e-33 | 123 |
| Msa0545080 | AT5G10510.2 | 48.462 | 130 | 53 | 4 | 129 | 247 | 227 | 353 | 2.16e-32 | 124 |
| Msa0545080 | AT1G79700.1 | 51.852 | 135 | 54 | 2 | 122 | 245 | 42 | 176 | 2.82e-32 | 120 |
| Msa0545080 | AT1G16060.1 | 51.449 | 138 | 56 | 2 | 121 | 247 | 47 | 184 | 2.19e-31 | 118 |
| Msa0545080 | AT5G10510.3 | 42.000 | 150 | 56 | 4 | 129 | 247 | 265 | 414 | 5.96e-30 | 117 |
| Msa0545080 | AT2G41710.1 | 50.388 | 129 | 50 | 2 | 129 | 247 | 67 | 191 | 1.68e-27 | 109 |
| Msa0545080 | AT2G41710.4 | 50.388 | 129 | 50 | 2 | 129 | 247 | 67 | 191 | 2.18e-27 | 109 |
| Msa0545080 | AT2G41710.2 | 48.507 | 134 | 50 | 3 | 129 | 247 | 67 | 196 | 4.07e-25 | 102 |
| Msa0545080 | AT3G54320.4 | 50.538 | 93 | 45 | 1 | 156 | 247 | 33 | 125 | 7.35e-24 | 98.6 |
| Msa0545080 | AT3G54320.5 | 50.538 | 93 | 45 | 1 | 156 | 247 | 33 | 125 | 7.35e-24 | 98.6 |
| Msa0545080 | AT2G41710.3 | 47.899 | 119 | 48 | 2 | 139 | 247 | 112 | 226 | 2.11e-22 | 95.5 |
| Msa0545080 | AT1G79700.3 | 54.082 | 98 | 44 | 1 | 151 | 247 | 5 | 102 | 3.80e-21 | 89.0 |
| Msa0545080 | AT1G16060.3 | 54.082 | 98 | 44 | 1 | 151 | 247 | 17 | 114 | 7.87e-20 | 86.3 |
| Msa0545080 | AT1G79700.4 | 53.846 | 91 | 41 | 1 | 158 | 247 | 6 | 96 | 8.44e-19 | 82.8 |
| Msa0545080 | AT2G47520.1 | 50.000 | 74 | 34 | 2 | 116 | 187 | 33 | 105 | 1.15e-12 | 64.7 |
| Msa0545080 | AT3G25730.1 | 37.895 | 95 | 55 | 2 | 121 | 215 | 53 | 143 | 1.01e-11 | 64.3 |
| Msa0545080 | AT1G68840.2 | 40.000 | 95 | 53 | 2 | 121 | 215 | 56 | 146 | 1.36e-11 | 63.9 |
| Msa0545080 | AT1G68840.1 | 40.000 | 95 | 53 | 2 | 121 | 215 | 56 | 146 | 1.36e-11 | 63.9 |
| Msa0545080 | AT1G16060.2 | 63.043 | 46 | 16 | 1 | 203 | 247 | 5 | 50 | 3.20e-11 | 61.6 |
| Msa0545080 | AT1G16060.4 | 63.043 | 46 | 16 | 1 | 203 | 247 | 5 | 50 | 3.20e-11 | 61.6 |
| Msa0545080 | AT1G16060.6 | 63.043 | 46 | 16 | 1 | 203 | 247 | 5 | 50 | 3.20e-11 | 61.6 |
| Msa0545080 | AT1G16060.5 | 63.043 | 46 | 16 | 1 | 203 | 247 | 5 | 50 | 3.20e-11 | 61.6 |
| Msa0545080 | AT3G54320.2 | 61.702 | 47 | 17 | 1 | 202 | 247 | 4 | 50 | 8.11e-11 | 61.2 |
Find 41 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTTTCGATATTCTGAAAA+TGG | 0.291737 | 4_1:-34816804 | Msa0545080:CDS |
| TGCGGGAAACAAGTTTATTT+AGG | 0.306046 | 4_1:-34816358 | Msa0545080:intron |
| ATCGAGCTGCTATTAAGTTT+AGG | 0.315665 | 4_1:-34816117 | Msa0545080:CDS |
| TCGAGCTGCTATTAAGTTTA+GGG | 0.321177 | 4_1:-34816116 | Msa0545080:CDS |
| TTTATCGAAGGACTGGTAGA+TGG | 0.343892 | 4_1:-34816571 | Msa0545080:CDS |
| CCTGATTCATCCACTGTTTG+CGG | 0.351817 | 4_1:+34816896 | None:intergenic |
| GTAGATGGGAATCGCATATC+TGG | 0.376583 | 4_1:-34816556 | Msa0545080:intron |
| TAATTATTTGTAGGGATTGC+GGG | 0.376888 | 4_1:-34816375 | Msa0545080:intron |
| GACGAAGAATTTATCGAAAG+AGG | 0.380753 | 4_1:-34815956 | Msa0545080:CDS |
| CCGCAAACAGTGGATGAATC+AGG | 0.419467 | 4_1:-34816896 | Msa0545080:CDS |
| TTACGATGATGATCTTAAAC+AGG | 0.443833 | 4_1:-34816059 | Msa0545080:intron |
| GCTATTAAGTTTAGGGGAGT+TGG | 0.448163 | 4_1:-34816109 | Msa0545080:CDS |
| CTACTCTTCTTCACTTGTTG+TGG | 0.469737 | 4_1:+34816638 | None:intergenic |
| GACGTAGCTTGCAACTTCAC+AGG | 0.475205 | 4_1:+34816740 | None:intergenic |
| GTTCTGATTCTGAATTGAAT+CGG | 0.477951 | 4_1:+34816949 | None:intergenic |
| TGGCCGTTGGGAAGCTCGAA+TGG | 0.481852 | 4_1:-34815851 | Msa0545080:CDS |
| GTAATTATTTGTAGGGATTG+CGG | 0.488911 | 4_1:-34816376 | Msa0545080:intron |
| ATTGCACAAATGTGGCCGTT+GGG | 0.489789 | 4_1:-34815863 | Msa0545080:CDS |
| TTCGATATTCTGAAAATGGA+AGG | 0.509003 | 4_1:-34816800 | Msa0545080:CDS |
| GCTCGAATGGGACAATTCCT+TGG | 0.523960 | 4_1:-34815838 | Msa0545080:CDS |
| CAAGTGAAGAAGAGTAGAAG+AGG | 0.529800 | 4_1:-34816632 | Msa0545080:CDS |
| TCCTCGATCGTCAATGCAGA+CGG | 0.536118 | 4_1:-34816863 | Msa0545080:CDS |
| TTATCGAAGGACTGGTAGAT+GGG | 0.545730 | 4_1:-34816570 | Msa0545080:CDS |
| CGAGCTGCTATTAAGTTTAG+GGG | 0.549687 | 4_1:-34816115 | Msa0545080:CDS |
| GGCCGTTGGGAAGCTCGAAT+GGG | 0.552095 | 4_1:-34815850 | Msa0545080:CDS |
| CATTGCACAAATGTGGCCGT+TGG | 0.556027 | 4_1:-34815864 | Msa0545080:CDS |
| CAAAGCAATGGTTTCTCAAG+AGG | 0.570934 | 4_1:-34815910 | Msa0545080:CDS |
| ACACAGCTGACGCTGCTGCT+AGG | 0.577273 | 4_1:-34816231 | Msa0545080:intron |
| AAAGAACTTTCCGCAAACAG+TGG | 0.595682 | 4_1:-34816906 | Msa0545080:CDS |
| GGAGTAACATTGCACAAATG+TGG | 0.602375 | 4_1:-34815871 | Msa0545080:CDS |
| AAAGCAATGGTTTCTCAAGA+GGG | 0.608305 | 4_1:-34815909 | Msa0545080:CDS |
| ACGTAGCTTGCAACTTCACA+GGG | 0.608726 | 4_1:+34816741 | None:intergenic |
| ATACTTCGTCGACAAAGCAA+TGG | 0.609369 | 4_1:-34815922 | Msa0545080:CDS |
| ACCGTCTGCATTGACGATCG+AGG | 0.612606 | 4_1:+34816862 | None:intergenic |
| GTCCCATTCGAGCTTCCCAA+CGG | 0.614222 | 4_1:+34815848 | None:intergenic |
| TATTGCGAACTACGAGACCT+AGG | 0.636461 | 4_1:+34816608 | None:intergenic |
| AGAAGAGTAGAAGAGGACCT+AGG | 0.639611 | 4_1:-34816625 | Msa0545080:CDS |
| TTCAAACGAAGTCGTAACGA+AGG | 0.645074 | 4_1:-34816771 | Msa0545080:CDS |
| AGAGGGAGTTCGAAATACAG+AGG | 0.669918 | 4_1:-34815892 | Msa0545080:CDS |
| ACTCAAAGTGAAATCGCGCG+TGG | 0.676094 | 4_1:+34816823 | None:intergenic |
| TCTCGTAGTTCGCAATACAG+AGG | 0.696706 | 4_1:-34816602 | Msa0545080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTGTAATTATTTGTA+GGG | - | chr4_1:34816428-34816447 | Msa0545080:intron | 10.0% |
| !!! | ATTATATGATTTACTATTTT+AGG | - | chr4_1:34816505-34816524 | Msa0545080:intron | 10.0% |
| !!! | TATTTTTGTAATTATTTGTA+GGG | - | chr4_1:34816428-34816447 | Msa0545080:intron | 10.0% |
| !!! | ATTATATGATTTACTATTTT+AGG | - | chr4_1:34816505-34816524 | Msa0545080:intron | 10.0% |
| !!! | ATTTATATGAAGTTTGATTT+CGG | - | chr4_1:34816356-34816375 | Msa0545080:intron | 15.0% |
| !!! | GTATTTTTGTAATTATTTGT+AGG | - | chr4_1:34816427-34816446 | Msa0545080:intron | 15.0% |
| !!! | ATTTATATGAAGTTTGATTT+CGG | - | chr4_1:34816356-34816375 | Msa0545080:intron | 15.0% |
| !!! | GTATTTTTGTAATTATTTGT+AGG | - | chr4_1:34816427-34816446 | Msa0545080:intron | 15.0% |
| !! | AATTTGTGGTTGAATTTTGT+AGG | - | chr4_1:34816549-34816568 | Msa0545080:intron | 25.0% |
| ! | TTGTTGAAATTGAATTGACT+TGG | - | chr4_1:34816648-34816667 | Msa0545080:CDS | 25.0% |
| !! | AATTTGTGGTTGAATTTTGT+AGG | - | chr4_1:34816549-34816568 | Msa0545080:intron | 25.0% |
| ! | TTGTTGAAATTGAATTGACT+TGG | - | chr4_1:34816648-34816667 | Msa0545080:CDS | 25.0% |
| GTTCTGATTCTGAATTGAAT+CGG | + | chr4_1:34815865-34815884 | None:intergenic | 30.0% | |
| ! | GAGTTTCGATATTCTGAAAA+TGG | - | chr4_1:34816007-34816026 | Msa0545080:intron | 30.0% |
| ! | TTCGATATTCTGAAAATGGA+AGG | - | chr4_1:34816011-34816030 | Msa0545080:intron | 30.0% |
| ! | CATATCTGGTTCGTAAATTT+CGG | - | chr4_1:34816269-34816288 | Msa0545080:intron | 30.0% |
| GTAATTATTTGTAGGGATTG+CGG | - | chr4_1:34816435-34816454 | Msa0545080:intron | 30.0% | |
| TAATTATTTGTAGGGATTGC+GGG | - | chr4_1:34816436-34816455 | Msa0545080:intron | 30.0% | |
| ! | TGAGTTTTTGACGAAATTTG+TGG | - | chr4_1:34816535-34816554 | Msa0545080:intron | 30.0% |
| TTACGATGATGATCTTAAAC+AGG | - | chr4_1:34816752-34816771 | Msa0545080:CDS | 30.0% | |
| TTGATGAATGTGAAACTAGA+TGG | - | chr4_1:34816796-34816815 | Msa0545080:CDS | 30.0% | |
| GTTCTGATTCTGAATTGAAT+CGG | + | chr4_1:34815865-34815884 | None:intergenic | 30.0% | |
| ! | GAGTTTCGATATTCTGAAAA+TGG | - | chr4_1:34816007-34816026 | Msa0545080:intron | 30.0% |
| ! | TTCGATATTCTGAAAATGGA+AGG | - | chr4_1:34816011-34816030 | Msa0545080:intron | 30.0% |
| ! | CATATCTGGTTCGTAAATTT+CGG | - | chr4_1:34816269-34816288 | Msa0545080:intron | 30.0% |
| GTAATTATTTGTAGGGATTG+CGG | - | chr4_1:34816435-34816454 | Msa0545080:intron | 30.0% | |
| TAATTATTTGTAGGGATTGC+GGG | - | chr4_1:34816436-34816455 | Msa0545080:intron | 30.0% | |
| ! | TGAGTTTTTGACGAAATTTG+TGG | - | chr4_1:34816535-34816554 | Msa0545080:intron | 30.0% |
| TTACGATGATGATCTTAAAC+AGG | - | chr4_1:34816752-34816771 | Msa0545080:CDS | 30.0% | |
| TTGATGAATGTGAAACTAGA+TGG | - | chr4_1:34816796-34816815 | Msa0545080:CDS | 30.0% | |
| ! | GTTTTCGATGAAGAACTGTT+CGG | - | chr4_1:34816103-34816122 | Msa0545080:CDS | 35.0% |
| TGCGGGAAACAAGTTTATTT+AGG | - | chr4_1:34816453-34816472 | Msa0545080:intron | 35.0% | |
| ! | TTGTGGTTGAATTTTGTAGG+TGG | - | chr4_1:34816552-34816571 | Msa0545080:intron | 35.0% |
| ATCGAGCTGCTATTAAGTTT+AGG | - | chr4_1:34816694-34816713 | Msa0545080:CDS | 35.0% | |
| TCGAGCTGCTATTAAGTTTA+GGG | - | chr4_1:34816695-34816714 | Msa0545080:CDS | 35.0% | |
| GACGAAGAATTTATCGAAAG+AGG | - | chr4_1:34816855-34816874 | Msa0545080:CDS | 35.0% | |
| AAAGCAATGGTTTCTCAAGA+GGG | - | chr4_1:34816902-34816921 | Msa0545080:CDS | 35.0% | |
| ! | GTTTTCGATGAAGAACTGTT+CGG | - | chr4_1:34816103-34816122 | Msa0545080:CDS | 35.0% |
| TGCGGGAAACAAGTTTATTT+AGG | - | chr4_1:34816453-34816472 | Msa0545080:intron | 35.0% | |
| ! | TTGTGGTTGAATTTTGTAGG+TGG | - | chr4_1:34816552-34816571 | Msa0545080:intron | 35.0% |
| ATCGAGCTGCTATTAAGTTT+AGG | - | chr4_1:34816694-34816713 | Msa0545080:CDS | 35.0% | |
| TCGAGCTGCTATTAAGTTTA+GGG | - | chr4_1:34816695-34816714 | Msa0545080:CDS | 35.0% | |
| GACGAAGAATTTATCGAAAG+AGG | - | chr4_1:34816855-34816874 | Msa0545080:CDS | 35.0% | |
| AAAGCAATGGTTTCTCAAGA+GGG | - | chr4_1:34816902-34816921 | Msa0545080:CDS | 35.0% | |
| AAAGAACTTTCCGCAAACAG+TGG | - | chr4_1:34815905-34815924 | Msa0545080:CDS | 40.0% | |
| TTCAAACGAAGTCGTAACGA+AGG | - | chr4_1:34816040-34816059 | Msa0545080:intron | 40.0% | |
| ! | CTACTCTTCTTCACTTGTTG+TGG | + | chr4_1:34816176-34816195 | None:intergenic | 40.0% |
| CAAGTGAAGAAGAGTAGAAG+AGG | - | chr4_1:34816179-34816198 | Msa0545080:intron | 40.0% | |
| !! | GAGGTGTTACGTTTTATCGA+AGG | - | chr4_1:34816228-34816247 | Msa0545080:intron | 40.0% |
| ! | GTTACGTTTTATCGAAGGAC+TGG | - | chr4_1:34816233-34816252 | Msa0545080:CDS | 40.0% |
| ! | TTTATCGAAGGACTGGTAGA+TGG | - | chr4_1:34816240-34816259 | Msa0545080:CDS | 40.0% |
| ! | TTATCGAAGGACTGGTAGAT+GGG | - | chr4_1:34816241-34816260 | Msa0545080:CDS | 40.0% |
| CGAGCTGCTATTAAGTTTAG+GGG | - | chr4_1:34816696-34816715 | Msa0545080:CDS | 40.0% | |
| GCTATTAAGTTTAGGGGAGT+TGG | - | chr4_1:34816702-34816721 | Msa0545080:CDS | 40.0% | |
| ATACTTCGTCGACAAAGCAA+TGG | - | chr4_1:34816889-34816908 | Msa0545080:CDS | 40.0% | |
| CAAAGCAATGGTTTCTCAAG+AGG | - | chr4_1:34816901-34816920 | Msa0545080:CDS | 40.0% | |
| GGAGTAACATTGCACAAATG+TGG | - | chr4_1:34816940-34816959 | Msa0545080:CDS | 40.0% | |
| AAAGAACTTTCCGCAAACAG+TGG | - | chr4_1:34815905-34815924 | Msa0545080:CDS | 40.0% | |
| TTCAAACGAAGTCGTAACGA+AGG | - | chr4_1:34816040-34816059 | Msa0545080:intron | 40.0% | |
| ! | CTACTCTTCTTCACTTGTTG+TGG | + | chr4_1:34816176-34816195 | None:intergenic | 40.0% |
| CAAGTGAAGAAGAGTAGAAG+AGG | - | chr4_1:34816179-34816198 | Msa0545080:intron | 40.0% | |
| !! | GAGGTGTTACGTTTTATCGA+AGG | - | chr4_1:34816228-34816247 | Msa0545080:intron | 40.0% |
| ! | GTTACGTTTTATCGAAGGAC+TGG | - | chr4_1:34816233-34816252 | Msa0545080:CDS | 40.0% |
| ! | TTTATCGAAGGACTGGTAGA+TGG | - | chr4_1:34816240-34816259 | Msa0545080:CDS | 40.0% |
| ! | TTATCGAAGGACTGGTAGAT+GGG | - | chr4_1:34816241-34816260 | Msa0545080:CDS | 40.0% |
| CGAGCTGCTATTAAGTTTAG+GGG | - | chr4_1:34816696-34816715 | Msa0545080:CDS | 40.0% | |
| GCTATTAAGTTTAGGGGAGT+TGG | - | chr4_1:34816702-34816721 | Msa0545080:CDS | 40.0% | |
| ATACTTCGTCGACAAAGCAA+TGG | - | chr4_1:34816889-34816908 | Msa0545080:CDS | 40.0% | |
| CAAAGCAATGGTTTCTCAAG+AGG | - | chr4_1:34816901-34816920 | Msa0545080:CDS | 40.0% | |
| GGAGTAACATTGCACAAATG+TGG | - | chr4_1:34816940-34816959 | Msa0545080:CDS | 40.0% | |
| CCTGATTCATCCACTGTTTG+CGG | + | chr4_1:34815918-34815937 | None:intergenic | 45.0% | |
| ! | ACGTAGCTTGCAACTTCACA+GGG | + | chr4_1:34816073-34816092 | None:intergenic | 45.0% |
| AGAAGAGTAGAAGAGGACCT+AGG | - | chr4_1:34816186-34816205 | Msa0545080:intron | 45.0% | |
| TATTGCGAACTACGAGACCT+AGG | + | chr4_1:34816206-34816225 | None:intergenic | 45.0% | |
| TCTCGTAGTTCGCAATACAG+AGG | - | chr4_1:34816209-34816228 | Msa0545080:intron | 45.0% | |
| GTAGATGGGAATCGCATATC+TGG | - | chr4_1:34816255-34816274 | Msa0545080:intron | 45.0% | |
| AGAGGGAGTTCGAAATACAG+AGG | - | chr4_1:34816919-34816938 | Msa0545080:CDS | 45.0% | |
| ATTGCACAAATGTGGCCGTT+GGG | - | chr4_1:34816948-34816967 | Msa0545080:CDS | 45.0% | |
| CCTGATTCATCCACTGTTTG+CGG | + | chr4_1:34815918-34815937 | None:intergenic | 45.0% | |
| ! | ACGTAGCTTGCAACTTCACA+GGG | + | chr4_1:34816073-34816092 | None:intergenic | 45.0% |
| AGAAGAGTAGAAGAGGACCT+AGG | - | chr4_1:34816186-34816205 | Msa0545080:intron | 45.0% | |
| TATTGCGAACTACGAGACCT+AGG | + | chr4_1:34816206-34816225 | None:intergenic | 45.0% | |
| TCTCGTAGTTCGCAATACAG+AGG | - | chr4_1:34816209-34816228 | Msa0545080:intron | 45.0% | |
| GTAGATGGGAATCGCATATC+TGG | - | chr4_1:34816255-34816274 | Msa0545080:intron | 45.0% | |
| AGAGGGAGTTCGAAATACAG+AGG | - | chr4_1:34816919-34816938 | Msa0545080:CDS | 45.0% | |
| ATTGCACAAATGTGGCCGTT+GGG | - | chr4_1:34816948-34816967 | Msa0545080:CDS | 45.0% | |
| CCGCAAACAGTGGATGAATC+AGG | - | chr4_1:34815915-34815934 | Msa0545080:CDS | 50.0% | |
| TCCTCGATCGTCAATGCAGA+CGG | - | chr4_1:34815948-34815967 | Msa0545080:CDS | 50.0% | |
| ACTCAAAGTGAAATCGCGCG+TGG | + | chr4_1:34815991-34816010 | None:intergenic | 50.0% | |
| ! | GACGTAGCTTGCAACTTCAC+AGG | + | chr4_1:34816074-34816093 | None:intergenic | 50.0% |
| CATTGCACAAATGTGGCCGT+TGG | - | chr4_1:34816947-34816966 | Msa0545080:CDS | 50.0% | |
| GCTCGAATGGGACAATTCCT+TGG | - | chr4_1:34816973-34816992 | Msa0545080:CDS | 50.0% | |
| CCGCAAACAGTGGATGAATC+AGG | - | chr4_1:34815915-34815934 | Msa0545080:CDS | 50.0% | |
| TCCTCGATCGTCAATGCAGA+CGG | - | chr4_1:34815948-34815967 | Msa0545080:CDS | 50.0% | |
| ACTCAAAGTGAAATCGCGCG+TGG | + | chr4_1:34815991-34816010 | None:intergenic | 50.0% | |
| ! | GACGTAGCTTGCAACTTCAC+AGG | + | chr4_1:34816074-34816093 | None:intergenic | 50.0% |
| CATTGCACAAATGTGGCCGT+TGG | - | chr4_1:34816947-34816966 | Msa0545080:CDS | 50.0% | |
| GCTCGAATGGGACAATTCCT+TGG | - | chr4_1:34816973-34816992 | Msa0545080:CDS | 50.0% | |
| ! | ACCGTCTGCATTGACGATCG+AGG | + | chr4_1:34815952-34815971 | None:intergenic | 55.0% |
| GTCCCATTCGAGCTTCCCAA+CGG | + | chr4_1:34816966-34816985 | None:intergenic | 55.0% | |
| ! | ACCGTCTGCATTGACGATCG+AGG | + | chr4_1:34815952-34815971 | None:intergenic | 55.0% |
| GTCCCATTCGAGCTTCCCAA+CGG | + | chr4_1:34816966-34816985 | None:intergenic | 55.0% | |
| ACACAGCTGACGCTGCTGCT+AGG | - | chr4_1:34816580-34816599 | Msa0545080:CDS | 60.0% | |
| TGGCCGTTGGGAAGCTCGAA+TGG | - | chr4_1:34816960-34816979 | Msa0545080:CDS | 60.0% | |
| GGCCGTTGGGAAGCTCGAAT+GGG | - | chr4_1:34816961-34816980 | Msa0545080:CDS | 60.0% | |
| ACACAGCTGACGCTGCTGCT+AGG | - | chr4_1:34816580-34816599 | Msa0545080:CDS | 60.0% | |
| TGGCCGTTGGGAAGCTCGAA+TGG | - | chr4_1:34816960-34816979 | Msa0545080:CDS | 60.0% | |
| GGCCGTTGGGAAGCTCGAAT+GGG | - | chr4_1:34816961-34816980 | Msa0545080:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 34815828 | 34817005 | 34815828 | ID=Msa0545080;Name=Msa0545080 |
| chr4_1 | mRNA | 34815828 | 34817005 | 34815828 | ID=Msa0545080-mRNA-1;Parent=Msa0545080;Name=Msa0545080-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|5|0|247 |
| chr4_1 | exon | 34816557 | 34817005 | 34816557 | ID=Msa0545080-mRNA-1:exon:8815;Parent=Msa0545080-mRNA-1 |
| chr4_1 | exon | 34816359 | 34816384 | 34816359 | ID=Msa0545080-mRNA-1:exon:8814;Parent=Msa0545080-mRNA-1 |
| chr4_1 | exon | 34816232 | 34816262 | 34816232 | ID=Msa0545080-mRNA-1:exon:8813;Parent=Msa0545080-mRNA-1 |
| chr4_1 | exon | 34816060 | 34816147 | 34816060 | ID=Msa0545080-mRNA-1:exon:8812;Parent=Msa0545080-mRNA-1 |
| chr4_1 | exon | 34815828 | 34815977 | 34815828 | ID=Msa0545080-mRNA-1:exon:8811;Parent=Msa0545080-mRNA-1 |
| chr4_1 | CDS | 34816557 | 34817005 | 34816557 | ID=Msa0545080-mRNA-1:cds;Parent=Msa0545080-mRNA-1 |
| chr4_1 | CDS | 34816359 | 34816384 | 34816359 | ID=Msa0545080-mRNA-1:cds;Parent=Msa0545080-mRNA-1 |
| chr4_1 | CDS | 34816232 | 34816262 | 34816232 | ID=Msa0545080-mRNA-1:cds;Parent=Msa0545080-mRNA-1 |
| chr4_1 | CDS | 34816060 | 34816147 | 34816060 | ID=Msa0545080-mRNA-1:cds;Parent=Msa0545080-mRNA-1 |
| chr4_1 | CDS | 34815828 | 34815977 | 34815828 | ID=Msa0545080-mRNA-1:cds;Parent=Msa0545080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
