Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0785120 | sp|Q5XF09|PT311_ARATH | 87.129 | 303 | 39 | 0 | 4 | 306 | 6 | 308 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0785120 | G7KBV5 | 98.693 | 306 | 4 | 0 | 1 | 306 | 1 | 306 | 0.0 | 609 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0697570 | Msa0785120 | 0.801833 | 7.470695e-49 | -8.615850e-47 |
| Msa0785120 | Msa0838090 | 0.816016 | 6.871663e-52 | -8.615850e-47 |
| Msa0785120 | Msa0862620 | 0.801477 | 8.840423e-49 | -8.615850e-47 |
| Msa0785120 | Msa0866070 | 0.805867 | 1.084739e-49 | -8.615850e-47 |
| Msa0785120 | Msa1043120 | 0.843362 | 1.468554e-58 | -8.615850e-47 |
| Msa0785120 | Msa1084640 | 0.822143 | 2.772912e-53 | -8.615850e-47 |
| Msa0785120 | Msa1236440 | 0.803327 | 3.675573e-49 | -8.615850e-47 |
| Msa0785120 | Msa1277670 | 0.801661 | 8.105391e-49 | -8.615850e-47 |
| Msa0785120 | Msa1400340 | 0.821909 | 3.142083e-53 | -8.615850e-47 |
| Msa0785120 | Msa1416730 | 0.814502 | 1.491104e-51 | -8.615850e-47 |
| Msa0408340 | Msa0785120 | 0.855887 | 4.666621e-62 | -8.615850e-47 |
| Msa0277410 | Msa0785120 | 0.811180 | 7.965492e-51 | -8.615850e-47 |
| Msa0501410 | Msa0785120 | 0.850737 | 1.399411e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0785120 | MtrunA17_Chr5g0436341 | 98.693 | 306 | 4 | 0 | 1 | 306 | 1 | 306 | 0.0 | 609 |
| Msa0785120 | MtrunA17_Chr3g0112981 | 89.439 | 303 | 32 | 0 | 4 | 306 | 20 | 322 | 0.0 | 555 |
| Msa0785120 | MtrunA17_Chr8g0382081 | 73.826 | 298 | 76 | 2 | 8 | 304 | 11 | 307 | 2.97e-161 | 451 |
| Msa0785120 | MtrunA17_Chr4g0008071 | 71.711 | 304 | 86 | 0 | 1 | 304 | 5 | 308 | 1.22e-160 | 450 |
| Msa0785120 | MtrunA17_Chr4g0056661 | 67.119 | 295 | 97 | 0 | 12 | 306 | 56 | 350 | 2.30e-135 | 387 |
| Msa0785120 | MtrunA17_Chr3g0103641 | 83.019 | 159 | 27 | 0 | 148 | 306 | 3 | 161 | 5.54e-96 | 280 |
| Msa0785120 | MtrunA17_Chr3g0103631 | 75.316 | 158 | 39 | 0 | 4 | 161 | 5 | 162 | 2.59e-84 | 251 |
| Msa0785120 | MtrunA17_Chr3g0114581 | 33.010 | 309 | 199 | 2 | 1 | 303 | 1 | 307 | 5.40e-51 | 171 |
| Msa0785120 | MtrunA17_Chr1g0160071 | 33.677 | 291 | 191 | 1 | 13 | 303 | 18 | 306 | 3.62e-50 | 169 |
| Msa0785120 | MtrunA17_Chr2g0307091 | 32.770 | 296 | 189 | 4 | 11 | 302 | 16 | 305 | 8.53e-36 | 132 |
| Msa0785120 | MtrunA17_Chr3g0137921 | 30.201 | 298 | 194 | 5 | 11 | 302 | 20 | 309 | 6.62e-31 | 119 |
| Msa0785120 | MtrunA17_Chr7g0270591 | 31.142 | 289 | 187 | 5 | 22 | 305 | 28 | 309 | 1.00e-27 | 110 |
| Msa0785120 | MtrunA17_Chr4g0063601 | 30.565 | 301 | 161 | 8 | 11 | 302 | 16 | 277 | 3.30e-23 | 97.4 |
| Msa0785120 | MtrunA17_Chr4g0069261 | 29.758 | 289 | 191 | 5 | 22 | 305 | 24 | 305 | 1.51e-22 | 96.7 |
| Msa0785120 | MtrunA17_Chr2g0312911 | 24.830 | 294 | 203 | 5 | 22 | 306 | 24 | 308 | 4.05e-21 | 91.7 |
| Msa0785120 | MtrunA17_Chr4g0058971 | 26.780 | 295 | 200 | 7 | 16 | 303 | 92 | 377 | 4.39e-19 | 86.7 |
| Msa0785120 | MtrunA17_Chr8g0341861 | 24.752 | 303 | 212 | 7 | 9 | 299 | 169 | 467 | 2.90e-16 | 79.0 |
| Msa0785120 | MtrunA17_Chr5g0419001 | 28.053 | 303 | 192 | 12 | 16 | 304 | 111 | 401 | 1.82e-14 | 73.2 |
| Msa0785120 | MtrunA17_Chr3g0117501 | 28.384 | 229 | 161 | 3 | 81 | 306 | 178 | 406 | 2.18e-14 | 73.2 |
| Msa0785120 | MtrunA17_Chr4g0046561 | 28.013 | 307 | 192 | 13 | 16 | 306 | 106 | 399 | 2.67e-14 | 72.8 |
| Msa0785120 | MtrunA17_Chr6g0449891 | 27.575 | 301 | 201 | 5 | 12 | 303 | 116 | 408 | 4.57e-14 | 72.0 |
| Msa0785120 | MtrunA17_Chr3g0097931 | 22.549 | 306 | 225 | 7 | 3 | 303 | 103 | 401 | 1.05e-12 | 68.2 |
| Msa0785120 | MtrunA17_Chr2g0298931 | 26.909 | 275 | 171 | 9 | 21 | 283 | 67 | 323 | 2.65e-12 | 66.6 |
| Msa0785120 | MtrunA17_Chr2g0288011 | 22.403 | 308 | 227 | 7 | 2 | 304 | 96 | 396 | 3.77e-12 | 66.2 |
| Msa0785120 | MtrunA17_Chr2g0326791 | 25.392 | 319 | 210 | 8 | 1 | 305 | 1 | 305 | 7.24e-12 | 65.5 |
| Msa0785120 | MtrunA17_Chr6g0467391 | 25.084 | 299 | 200 | 6 | 18 | 305 | 20 | 305 | 1.85e-11 | 63.9 |
| Msa0785120 | MtrunA17_Chr6g0467371 | 25.084 | 299 | 200 | 6 | 18 | 305 | 20 | 305 | 1.85e-11 | 63.9 |
| Msa0785120 | MtrunA17_Chr4g0074541 | 22.449 | 294 | 217 | 6 | 14 | 303 | 106 | 392 | 7.38e-11 | 62.4 |
| Msa0785120 | MtrunA17_Chr4g0028931 | 25.633 | 316 | 211 | 8 | 1 | 304 | 1 | 304 | 7.52e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0785120 | AT3G11320.1 | 87.129 | 303 | 39 | 0 | 4 | 306 | 6 | 308 | 0.0 | 545 |
| Msa0785120 | AT5G05820.1 | 84.641 | 306 | 47 | 0 | 1 | 306 | 3 | 308 | 0.0 | 537 |
| Msa0785120 | AT5G04160.1 | 71.661 | 307 | 84 | 1 | 1 | 304 | 1 | 307 | 8.82e-161 | 450 |
| Msa0785120 | AT3G10290.1 | 72.054 | 297 | 83 | 0 | 8 | 304 | 57 | 353 | 2.23e-159 | 449 |
| Msa0785120 | AT1G12500.1 | 65.677 | 303 | 104 | 0 | 4 | 306 | 54 | 356 | 2.29e-139 | 398 |
| Msa0785120 | AT1G21870.1 | 35.836 | 293 | 182 | 4 | 13 | 303 | 19 | 307 | 2.71e-52 | 175 |
| Msa0785120 | AT1G77610.1 | 34.868 | 304 | 194 | 3 | 1 | 303 | 1 | 301 | 5.97e-52 | 174 |
| Msa0785120 | AT5G11230.1 | 32.095 | 296 | 187 | 5 | 13 | 302 | 22 | 309 | 2.89e-33 | 125 |
| Msa0785120 | AT5G25400.1 | 31.544 | 298 | 190 | 5 | 11 | 302 | 20 | 309 | 2.92e-32 | 122 |
| Msa0785120 | AT4G32390.1 | 31.544 | 298 | 190 | 5 | 11 | 302 | 20 | 309 | 2.15e-31 | 120 |
| Msa0785120 | AT2G25520.1 | 31.879 | 298 | 189 | 5 | 11 | 302 | 20 | 309 | 1.18e-30 | 118 |
| Msa0785120 | AT3G17430.2 | 30.450 | 289 | 189 | 5 | 22 | 305 | 25 | 306 | 1.49e-26 | 107 |
| Msa0785120 | AT3G17430.1 | 30.450 | 289 | 189 | 5 | 22 | 305 | 25 | 306 | 1.49e-26 | 107 |
| Msa0785120 | AT1G53660.1 | 26.042 | 288 | 202 | 5 | 22 | 305 | 30 | 310 | 5.48e-25 | 102 |
| Msa0785120 | AT1G53660.3 | 26.042 | 288 | 202 | 5 | 22 | 305 | 48 | 328 | 8.94e-25 | 102 |
| Msa0785120 | AT1G53660.4 | 25.735 | 272 | 193 | 4 | 36 | 305 | 12 | 276 | 1.55e-23 | 98.2 |
| Msa0785120 | AT1G48230.1 | 31.058 | 293 | 182 | 6 | 22 | 305 | 25 | 306 | 1.32e-22 | 96.7 |
| Msa0785120 | AT3G14410.1 | 26.480 | 321 | 212 | 6 | 1 | 306 | 1 | 312 | 1.44e-22 | 96.3 |
| Msa0785120 | AT1G53660.5 | 26.009 | 223 | 157 | 3 | 84 | 305 | 1 | 216 | 6.70e-19 | 84.3 |
| Msa0785120 | AT1G48230.2 | 30.213 | 235 | 146 | 5 | 78 | 305 | 10 | 233 | 6.65e-15 | 73.9 |
| Msa0785120 | AT5G17630.1 | 24.324 | 296 | 212 | 8 | 16 | 306 | 119 | 407 | 1.06e-14 | 74.3 |
| Msa0785120 | AT5G57100.1 | 25.606 | 289 | 202 | 7 | 21 | 306 | 76 | 354 | 1.10e-14 | 74.3 |
| Msa0785120 | AT3G01550.1 | 26.962 | 293 | 204 | 5 | 16 | 303 | 86 | 373 | 2.27e-14 | 73.2 |
| Msa0785120 | AT1G06470.4 | 23.453 | 307 | 211 | 8 | 9 | 299 | 75 | 373 | 7.23e-14 | 72.0 |
| Msa0785120 | AT1G06470.2 | 23.453 | 307 | 211 | 8 | 9 | 299 | 75 | 373 | 7.23e-14 | 72.0 |
| Msa0785120 | AT1G06470.1 | 23.453 | 307 | 211 | 8 | 9 | 299 | 75 | 373 | 7.23e-14 | 72.0 |
| Msa0785120 | AT1G06470.3 | 23.453 | 307 | 211 | 8 | 9 | 299 | 75 | 373 | 7.23e-14 | 72.0 |
| Msa0785120 | AT5G54800.1 | 23.607 | 305 | 221 | 7 | 3 | 302 | 90 | 387 | 1.49e-13 | 70.9 |
| Msa0785120 | AT1G53660.2 | 28.333 | 180 | 122 | 4 | 22 | 196 | 48 | 225 | 2.45e-13 | 68.9 |
| Msa0785120 | AT5G33320.1 | 27.759 | 299 | 198 | 8 | 12 | 302 | 111 | 399 | 1.52e-12 | 68.2 |
| Msa0785120 | AT5G46110.2 | 26.797 | 306 | 197 | 11 | 16 | 306 | 2 | 295 | 4.26e-12 | 65.9 |
| Msa0785120 | AT1G61800.1 | 21.498 | 307 | 229 | 7 | 2 | 303 | 89 | 388 | 7.01e-12 | 65.9 |
| Msa0785120 | AT5G46110.4 | 26.490 | 302 | 198 | 9 | 16 | 304 | 115 | 405 | 7.54e-12 | 65.9 |
| Msa0785120 | AT5G46110.1 | 26.230 | 305 | 200 | 9 | 16 | 306 | 115 | 408 | 7.66e-12 | 65.9 |
| Msa0785120 | AT1G61800.2 | 21.036 | 309 | 232 | 7 | 2 | 305 | 89 | 390 | 1.70e-11 | 64.7 |
| Msa0785120 | AT3G01550.2 | 27.211 | 294 | 197 | 8 | 16 | 303 | 86 | 368 | 2.36e-11 | 64.3 |
| Msa0785120 | AT5G57100.2 | 27.604 | 192 | 132 | 5 | 21 | 210 | 76 | 262 | 3.88e-11 | 63.2 |
| Msa0785120 | AT2G28315.1 | 23.920 | 301 | 211 | 6 | 6 | 299 | 5 | 294 | 4.73e-11 | 63.2 |
| Msa0785120 | AT2G28315.2 | 23.920 | 301 | 211 | 6 | 6 | 299 | 5 | 294 | 5.40e-11 | 62.8 |
Find 96 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGATTCTTTCATGGTTT+TGG | 0.095645 | 5_2:+69913555 | None:intergenic |
| TTGGTACCATGAGCTATTTC+TGG | 0.216098 | 5_2:+69909982 | None:intergenic |
| GCTCTTGTTCCTGTTGTTAC+TGG | 0.222805 | 5_2:-69913148 | Msa0785120:CDS |
| ATAAAACTACACTGCCTAAT+TGG | 0.226221 | 5_2:+69909780 | None:intergenic |
| CTGGACAGTTGCTAATATAA+TGG | 0.233512 | 5_2:+69910001 | None:intergenic |
| TGAAGAAAGAGTTGTATAAT+TGG | 0.239436 | 5_2:-69909885 | Msa0785120:three_prime_UTR |
| GAACCAAGCTTCCATTTGTT+TGG | 0.241327 | 5_2:-69911452 | Msa0785120:CDS |
| ATCATTCCAGTGACTGAAAC+TGG | 0.253281 | 5_2:+69910236 | None:intergenic |
| TGACACATGGTGAGGAAAAT+TGG | 0.261872 | 5_2:+69913433 | None:intergenic |
| TGCAATCGCTTGGTTCAAAA+TGG | 0.276655 | 5_2:-69913380 | Msa0785120:CDS |
| GGCTTTGCTTGATTCTTTCA+TGG | 0.277463 | 5_2:+69913549 | None:intergenic |
| AACCAAGCTTCCATTTGTTT+GGG | 0.304562 | 5_2:-69911451 | Msa0785120:CDS |
| TCTTCCTGCTACACTCTATA+TGG | 0.309783 | 5_2:-69911194 | Msa0785120:CDS |
| ACTCTATATATGAATTCTTT+TGG | 0.322718 | 5_2:-69910055 | Msa0785120:three_prime_UTR |
| TTGAAAGGAGATACTTGTTT+AGG | 0.330177 | 5_2:+69913473 | None:intergenic |
| TACAGAGATCATTCACTTAC+TGG | 0.336378 | 5_2:+69909956 | None:intergenic |
| TGGACAGTTGCTAATATAAT+GGG | 0.358432 | 5_2:+69910002 | None:intergenic |
| TAATGGGAACCCCTTCAATA+AGG | 0.372684 | 5_2:+69910018 | None:intergenic |
| GATTGCAACGTAGCTGAATA+AGG | 0.384927 | 5_2:+69913396 | None:intergenic |
| TTCAATAAGGCTTTCTATGT+GGG | 0.392147 | 5_2:+69910031 | None:intergenic |
| TACCAGTGCTCTCACCCTTC+AGG | 0.394449 | 5_2:-69911047 | Msa0785120:intron |
| TGAGACAATTGTTCAGAATC+AGG | 0.399092 | 5_2:-69910087 | Msa0785120:three_prime_UTR |
| AAGAAGAAAGTGCAAGGAAA+TGG | 0.405412 | 5_2:-69913874 | Msa0785120:five_prime_UTR |
| GTGGTATATAGTAGCCAATT+AGG | 0.411762 | 5_2:-69909794 | Msa0785120:three_prime_UTR |
| GAGATGATGTGAAGATCATT+TGG | 0.421654 | 5_2:-69911135 | Msa0785120:CDS |
| AGTTTCAGTCACTGGAATGA+TGG | 0.435874 | 5_2:-69910234 | Msa0785120:CDS |
| ATGAGTGAAGGAAAGGTAAA+CGG | 0.447059 | 5_2:+69913811 | None:intergenic |
| GGTTATTCACTCACAGTCCT+TGG | 0.450720 | 5_2:-69910212 | Msa0785120:CDS |
| AGGTACTTGGGAATGCTAAA+GGG | 0.451974 | 5_2:-69910298 | Msa0785120:CDS |
| AACGGGAACGCGTATACAAA+CGG | 0.460521 | 5_2:+69913829 | None:intergenic |
| ACGGGAACGCGTATACAAAC+GGG | 0.461233 | 5_2:+69913830 | None:intergenic |
| AGAAACCCAGTTTCAGTCAC+TGG | 0.462050 | 5_2:-69910242 | Msa0785120:CDS |
| AGTTTGTTCATATAGGTACT+TGG | 0.462356 | 5_2:-69910311 | Msa0785120:intron |
| TGTTCAGAATCAGGATGTTA+CGG | 0.465758 | 5_2:-69910078 | Msa0785120:three_prime_UTR |
| TTGGAGCCATGTAAAGTAGA+AGG | 0.468805 | 5_2:+69911233 | None:intergenic |
| CTTCAATAAGGCTTTCTATG+TGG | 0.470060 | 5_2:+69910030 | None:intergenic |
| ATCATTCACTTACTGGAACT+TGG | 0.472047 | 5_2:+69909963 | None:intergenic |
| TATGAACCTTCTACTTTACA+TGG | 0.472403 | 5_2:-69911239 | Msa0785120:CDS |
| TAGGTACTTGGGAATGCTAA+AGG | 0.479924 | 5_2:-69910299 | Msa0785120:CDS |
| ATGGATCTATGAAGAGGAAT+GGG | 0.480468 | 5_2:+69913597 | None:intergenic |
| ATATTATGAACCCAAACAAA+TGG | 0.482955 | 5_2:+69911441 | None:intergenic |
| CTGGCGTTATCATTGCTAGT+GGG | 0.486435 | 5_2:-69913129 | Msa0785120:CDS |
| TCTTCCATATAGAGTGTAGC+AGG | 0.486739 | 5_2:+69911190 | None:intergenic |
| ATGATAACGCCAGTAACAAC+AGG | 0.487545 | 5_2:+69913139 | None:intergenic |
| AATGATCTTCACATCATCTC+TGG | 0.491323 | 5_2:+69911138 | None:intergenic |
| AACCCAAACAAATGGAAGCT+TGG | 0.492671 | 5_2:+69911449 | None:intergenic |
| CATGGATCTATGAAGAGGAA+TGG | 0.500732 | 5_2:+69913596 | None:intergenic |
| TCAGCTACGTTGCAATCGCT+TGG | 0.501471 | 5_2:-69913390 | Msa0785120:CDS |
| CATTCCTCAGTATGCCAACA+TGG | 0.511027 | 5_2:+69909927 | None:intergenic |
| AAGTATCTCCTTTCAAACTA+CGG | 0.511440 | 5_2:-69913466 | Msa0785120:CDS |
| TATAGAGTGTAGCAGGAAGA+AGG | 0.515468 | 5_2:+69911197 | None:intergenic |
| GACACATGGTGAGGAAAATT+GGG | 0.517372 | 5_2:+69913434 | None:intergenic |
| AGAAGGAAAACAACAGCCAT+TGG | 0.520144 | 5_2:+69911214 | None:intergenic |
| GTTTGTTCATATAGGTACTT+GGG | 0.521176 | 5_2:-69910310 | Msa0785120:intron |
| TCTACTTTACATGGCTCCAA+TGG | 0.521350 | 5_2:-69911230 | Msa0785120:CDS |
| GTGTTGAAGGTGTCAAGAAA+AGG | 0.522236 | 5_2:+69913935 | None:intergenic |
| GTTTCAGTCACTGGAATGAT+GGG | 0.522262 | 5_2:-69910233 | Msa0785120:CDS |
| CACATAGAAAGCCTTATTGA+AGG | 0.522661 | 5_2:-69910029 | Msa0785120:three_prime_UTR |
| ATTTGAAACCGTAGTTTGAA+AGG | 0.524913 | 5_2:+69913458 | None:intergenic |
| GGAGATACTTGTTTAGGAGT+AGG | 0.527615 | 5_2:+69913479 | None:intergenic |
| CGAGAACGCATGAATTGCAT+TGG | 0.534806 | 5_2:+69913355 | None:intergenic |
| TACCTGAAGGGTGAGAGCAC+TGG | 0.534983 | 5_2:+69911045 | None:intergenic |
| ACATAGAAAGCCTTATTGAA+GGG | 0.540008 | 5_2:-69910028 | Msa0785120:three_prime_UTR |
| TGAGTGAAGGAAAGGTAAAC+GGG | 0.540228 | 5_2:+69913812 | None:intergenic |
| TAAAGGGGCTGTAGCAGTTG+TGG | 0.542190 | 5_2:-69910282 | Msa0785120:CDS |
| GTGTCGTTTAATCAAGCTAT+CGG | 0.549847 | 5_2:-69913247 | Msa0785120:CDS |
| ACTGGCGTTATCATTGCTAG+TGG | 0.553412 | 5_2:-69913130 | Msa0785120:CDS |
| TAGGAGTAGGACTCCTATGT+TGG | 0.563888 | 5_2:+69913492 | None:intergenic |
| TGACGCTCAAAAGAGAGGCT+TGG | 0.567754 | 5_2:-69913183 | Msa0785120:CDS |
| TCATTCCAGTGACTGAAACT+GGG | 0.574484 | 5_2:+69910237 | None:intergenic |
| CAAGTGCGGAATTGAACAGC+AGG | 0.586756 | 5_2:+69911110 | None:intergenic |
| TTGTTCATGGATCTATGAAG+AGG | 0.587339 | 5_2:+69913591 | None:intergenic |
| CATAGAAAGCCTTATTGAAG+GGG | 0.588595 | 5_2:-69910027 | Msa0785120:three_prime_UTR |
| TGCTATGACGCTCAAAAGAG+AGG | 0.597743 | 5_2:-69913188 | Msa0785120:CDS |
| GGTACTTGGGAATGCTAAAG+GGG | 0.601716 | 5_2:-69910297 | Msa0785120:CDS |
| AACTGTCCAGAAATAGCTCA+TGG | 0.603467 | 5_2:-69909988 | Msa0785120:three_prime_UTR |
| GCATGGTACTCATCCAACAT+AGG | 0.604171 | 5_2:-69913505 | Msa0785120:CDS |
| TATATGGAAGAAAATGTGAT+CGG | 0.605292 | 5_2:-69911178 | Msa0785120:CDS |
| TGAGATTAATGTTATTGTGA+AGG | 0.605559 | 5_2:+69913528 | None:intergenic |
| TCTCTGTAGTATACCCATGT+TGG | 0.609260 | 5_2:-69909941 | Msa0785120:three_prime_UTR |
| GTATTGTATGAGTGAAGGAA+AGG | 0.609819 | 5_2:+69913804 | None:intergenic |
| TCAATAAGGCTTTCTATGTG+GGG | 0.615474 | 5_2:+69910032 | None:intergenic |
| CACTATAAAGTACAACTCCA+AGG | 0.624587 | 5_2:+69910195 | None:intergenic |
| TATTGGTATTGTATGAGTGA+AGG | 0.631202 | 5_2:+69913799 | None:intergenic |
| ATTGACAAAATATGCAAGTG+CGG | 0.636129 | 5_2:+69911096 | None:intergenic |
| AAAAGGGAGACATACCTGAA+GGG | 0.638755 | 5_2:+69911033 | None:intergenic |
| TGGCGTTATCATTGCTAGTG+GGG | 0.641617 | 5_2:-69913128 | Msa0785120:intron |
| ATTCCTCAGTATGCCAACAT+GGG | 0.659167 | 5_2:+69909928 | None:intergenic |
| CAATAACATTAATCTCAGCA+TGG | 0.659834 | 5_2:-69913522 | Msa0785120:CDS |
| CGGGAACGCGTATACAAACG+GGG | 0.668750 | 5_2:+69913831 | None:intergenic |
| AAATGTGATCGGCATCACGT+TGG | 0.673641 | 5_2:-69911167 | Msa0785120:CDS |
| ATACCCATGTTGGCATACTG+AGG | 0.677351 | 5_2:-69909931 | Msa0785120:three_prime_UTR |
| ATAGCTTGATTAAACGACAC+AGG | 0.688704 | 5_2:+69913250 | None:intergenic |
| ACATGCTGTCATGTGACACA+TGG | 0.739726 | 5_2:+69913420 | None:intergenic |
| CTGTCATGTGACACATGGTG+AGG | 0.745537 | 5_2:+69913425 | None:intergenic |
| GGGAACGCGTATACAAACGG+GGG | 0.751360 | 5_2:+69913832 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTAATTTTTTATTGTT+TGG | - | chr5_2:69910769-69910788 | Msa0785120:intron | 10.0% |
| !!! | AATATAATTTTCTTAAGTAA+GGG | + | chr5_2:69910800-69910819 | None:intergenic | 10.0% |
| !!! | TTTACTTTTACTTATATTTA+AGG | - | chr5_2:69910950-69910969 | Msa0785120:intron | 10.0% |
| !! | AATCAAATTAAAGAAAATTA+TGG | - | chr5_2:69911727-69911746 | Msa0785120:intron | 10.0% |
| !! | TTATCAAGTTATATAATAAA+TGG | - | chr5_2:69912359-69912378 | Msa0785120:intron | 10.0% |
| !! | TATCAAGTTATATAATAAAT+GGG | - | chr5_2:69912360-69912379 | Msa0785120:intron | 10.0% |
| !!! | AAAATGTAAATATTTGTTTT+TGG | - | chr5_2:69913157-69913176 | Msa0785120:CDS | 10.0% |
| !!! | AAATGTAAATATTTGTTTTT+GGG | - | chr5_2:69913158-69913177 | Msa0785120:CDS | 10.0% |
| !!! | GAATATAATTTTCTTAAGTA+AGG | + | chr5_2:69910801-69910820 | None:intergenic | 15.0% |
| !! | GAGAAAAATAATATAAAAGT+CGG | - | chr5_2:69911140-69911159 | Msa0785120:CDS | 15.0% |
| !! | TTTATTCAATTTGCACAATT+TGG | - | chr5_2:69910649-69910668 | Msa0785120:intron | 20.0% |
| !! | AAAGCTTATAAATTGCATTT+AGG | - | chr5_2:69910720-69910739 | Msa0785120:intron | 20.0% |
| !! | AAGCTTATAAATTGCATTTA+GGG | - | chr5_2:69910721-69910740 | Msa0785120:intron | 20.0% |
| !!! | GATTTTGGAATAAATACTTT+TGG | + | chr5_2:69910916-69910935 | None:intergenic | 20.0% |
| !! | ATTAATCACAACAAATGAAA+TGG | - | chr5_2:69911019-69911038 | Msa0785120:intron | 20.0% |
| !! | TGATGTTCTTAAATTATTAG+CGG | + | chr5_2:69911229-69911248 | None:intergenic | 20.0% |
| !! | TTTAGTGTAATTATATGTGA+CGG | - | chr5_2:69911254-69911273 | Msa0785120:CDS | 20.0% |
| !!! | GACCATTTTATTTATGTTTT+CGG | - | chr5_2:69911490-69911509 | Msa0785120:intron | 20.0% |
| !!! | ACCATTTTATTTATGTTTTC+GGG | - | chr5_2:69911491-69911510 | Msa0785120:intron | 20.0% |
| !! | AAATTACCAATAGTTAGAAT+CGG | + | chr5_2:69911803-69911822 | None:intergenic | 20.0% |
| !!! | TCAATTATTTTTATGACCAA+TGG | - | chr5_2:69911843-69911862 | Msa0785120:intron | 20.0% |
| !! | TACGAAAATAAGAATCTTTA+TGG | - | chr5_2:69912143-69912162 | Msa0785120:intron | 20.0% |
| !!! | AAGAAACTTGTTTATAACAA+TGG | + | chr5_2:69912750-69912769 | None:intergenic | 20.0% |
| !!! | ACAATTGTTTTAAACTTTGT+AGG | - | chr5_2:69913111-69913130 | Msa0785120:intron | 20.0% |
| !!! | CAATTGTTTTAAACTTTGTA+GGG | - | chr5_2:69913112-69913131 | Msa0785120:intron | 20.0% |
| !! | TAATGAGTATGATTCAAATA+AGG | - | chr5_2:69913221-69913240 | Msa0785120:CDS | 20.0% |
| !!! | ACTCTATATATGAATTCTTT+TGG | - | chr5_2:69913607-69913626 | Msa0785120:five_prime_UTR | 20.0% |
| !!! | AAATTCGTATTTTTTGATTG+TGG | - | chr5_2:69913849-69913868 | Msa0785120:five_prime_UTR | 20.0% |
| !!! | AAAAACGGTGTTATTGTTAT+TGG | + | chr5_2:69909883-69909902 | None:intergenic | 25.0% |
| ! | AAGCGTATAAAAGACAAAAA+CGG | + | chr5_2:69909898-69909917 | None:intergenic | 25.0% |
| ! | TGAGATTAATGTTATTGTGA+AGG | + | chr5_2:69910137-69910156 | None:intergenic | 25.0% |
| !!! | TTTTTGGTAATGTTTCGTTA+CGG | - | chr5_2:69910383-69910402 | Msa0785120:intron | 25.0% |
| ! | AGCTTATAAATTGCATTTAG+GGG | - | chr5_2:69910722-69910741 | Msa0785120:intron | 25.0% |
| !! | TTTTGCTTACATTTTCTTAG+AGG | + | chr5_2:69910891-69910910 | None:intergenic | 25.0% |
| !!! | GTATATTCTAAGAACAGTTT+TGG | - | chr5_2:69910979-69910998 | Msa0785120:intron | 25.0% |
| !!! | CAATTGTTTCTGAATTACAA+GGG | + | chr5_2:69911080-69911099 | None:intergenic | 25.0% |
| !!! | ACAATTGTTTCTGAATTACA+AGG | + | chr5_2:69911081-69911100 | None:intergenic | 25.0% |
| ! | AATTGTGTAATTGACAAATG+AGG | - | chr5_2:69911095-69911114 | Msa0785120:CDS | 25.0% |
| ! | ATTGTGTAATTGACAAATGA+GGG | - | chr5_2:69911096-69911115 | Msa0785120:CDS | 25.0% |
| ! | AGACTTCTTTAATTGAGAAA+TGG | + | chr5_2:69911392-69911411 | None:intergenic | 25.0% |
| ! | ATTTCTCAATTAAAGAAGTC+TGG | - | chr5_2:69911391-69911410 | Msa0785120:CDS | 25.0% |
| ! | TCCCGAAAACATAAATAAAA+TGG | + | chr5_2:69911495-69911514 | None:intergenic | 25.0% |
| !!! | TATTTATGTTTTCGGGATTT+TGG | - | chr5_2:69911498-69911517 | Msa0785120:intron | 25.0% |
| !! | TACTAATGACTTTTGATAAG+TGG | + | chr5_2:69911757-69911776 | None:intergenic | 25.0% |
| ! | ATAATTGAACTAGATCTGTA+TGG | + | chr5_2:69911831-69911850 | None:intergenic | 25.0% |
| !! | ATCTGATTTAAGTTTGTCTT+AGG | - | chr5_2:69911939-69911958 | Msa0785120:intron | 25.0% |
| ! | ATCAGACATCATATAAATCA+AGG | + | chr5_2:69911976-69911995 | None:intergenic | 25.0% |
| ! | ATGACCAAATCTTTATCAAA+AGG | - | chr5_2:69912048-69912067 | Msa0785120:intron | 25.0% |
| !! | AGTTCCTTTTGATAAAGATT+TGG | + | chr5_2:69912055-69912074 | None:intergenic | 25.0% |
| !!! | AGATTCTTATTTTCGTAGTT+TGG | + | chr5_2:69912140-69912159 | None:intergenic | 25.0% |
| ! | ATATTATGAACCCAAACAAA+TGG | + | chr5_2:69912224-69912243 | None:intergenic | 25.0% |
| ! | CAGAAGAAAACAAATTAATG+AGG | + | chr5_2:69912339-69912358 | None:intergenic | 25.0% |
| ! | TATATGGAAGAAAATGTGAT+CGG | - | chr5_2:69912484-69912503 | Msa0785120:intron | 25.0% |
| !! | ATGTTTTGTGACCAAAAAAT+TGG | + | chr5_2:69912596-69912615 | None:intergenic | 25.0% |
| ! | GTTGTATGACTATATGAAAA+GGG | + | chr5_2:69912648-69912667 | None:intergenic | 25.0% |
| ! | AGTTGTATGACTATATGAAA+AGG | + | chr5_2:69912649-69912668 | None:intergenic | 25.0% |
| ! | TATAACAATGGAAAAAAGCT+AGG | + | chr5_2:69912738-69912757 | None:intergenic | 25.0% |
| ! | CATAATTATTTCAAACCTCT+TGG | - | chr5_2:69912806-69912825 | Msa0785120:intron | 25.0% |
| !!! | AATGCTGCTTATATTTTCAT+TGG | - | chr5_2:69912844-69912863 | Msa0785120:intron | 25.0% |
| ! | TGAAGAAAGAGTTGTATAAT+TGG | - | chr5_2:69913777-69913796 | Msa0785120:five_prime_UTR | 25.0% |
| ! | AAAAAGAAGAAGAAAGTGCA+AGG | - | chr5_2:69909782-69909801 | Msa0785120:three_prime_UTR | 30.0% |
| TATTGGTATTGTATGAGTGA+AGG | + | chr5_2:69909866-69909885 | None:intergenic | 30.0% | |
| !! | AATGGGTTTGTTAGAATAGA+AGG | + | chr5_2:69910051-69910070 | None:intergenic | 30.0% |
| !! | TTGATTCTTTCATGGTTTTG+GGG | + | chr5_2:69910108-69910127 | None:intergenic | 30.0% |
| ! | CTTGATTCTTTCATGGTTTT+GGG | + | chr5_2:69910109-69910128 | None:intergenic | 30.0% |
| CAATAACATTAATCTCAGCA+TGG | - | chr5_2:69910140-69910159 | Msa0785120:three_prime_UTR | 30.0% | |
| TTGAAAGGAGATACTTGTTT+AGG | + | chr5_2:69910192-69910211 | None:intergenic | 30.0% | |
| AAGTATCTCCTTTCAAACTA+CGG | - | chr5_2:69910196-69910215 | Msa0785120:CDS | 30.0% | |
| ! | ATTTGAAACCGTAGTTTGAA+AGG | + | chr5_2:69910207-69910226 | None:intergenic | 30.0% |
| ! | AACTCAAAGTAGCGATTTTA+AGG | + | chr5_2:69910342-69910361 | None:intergenic | 30.0% |
| CGAAACATTACCAAAAACAA+CGG | + | chr5_2:69910380-69910399 | None:intergenic | 30.0% | |
| ATAAATTGCATTTAGGGGTA+TGG | - | chr5_2:69910727-69910746 | Msa0785120:intron | 30.0% | |
| ! | TAAATTGCATTTAGGGGTAT+GGG | - | chr5_2:69910728-69910747 | Msa0785120:intron | 30.0% |
| ! | AAACGAATTCAACTCGATTT+TGG | + | chr5_2:69910931-69910950 | None:intergenic | 30.0% |
| !!! | TTTTTTGTCTTAATCCGTAG+AGG | - | chr5_2:69911053-69911072 | Msa0785120:CDS | 30.0% |
| ! | TTTTTGTCTTAATCCGTAGA+GGG | - | chr5_2:69911054-69911073 | Msa0785120:CDS | 30.0% |
| TCTTAAATTATTAGCGGTGT+TGG | + | chr5_2:69911223-69911242 | None:intergenic | 30.0% | |
| CTTCATAGACTACATGTATA+CGG | - | chr5_2:69911339-69911358 | Msa0785120:intron | 30.0% | |
| TTCATAGACTACATGTATAC+GGG | - | chr5_2:69911340-69911359 | Msa0785120:intron | 30.0% | |
| TTCCGATATGTAATTGAACT+TGG | - | chr5_2:69911424-69911443 | Msa0785120:CDS | 30.0% | |
| TCCGATATGTAATTGAACTT+GGG | - | chr5_2:69911425-69911444 | Msa0785120:CDS | 30.0% | |
| !!! | TTGGACTTTGTTTTTAAAGC+CGG | - | chr5_2:69911672-69911691 | Msa0785120:intron | 30.0% |
| ! | TAATGACTTTTGATAAGTGG+AGG | + | chr5_2:69911754-69911773 | None:intergenic | 30.0% |
| !! | TATTTTTATGACCAATGGAG+TGG | - | chr5_2:69911848-69911867 | Msa0785120:intron | 30.0% |
| AGAGATTCTTATGTACACAA+TGG | + | chr5_2:69911899-69911918 | None:intergenic | 30.0% | |
| CTTGATATGTTCATATTGTG+TGG | - | chr5_2:69912073-69912092 | Msa0785120:intron | 30.0% | |
| ! | TCTTTTCTTTCTTTGCTTAC+AGG | - | chr5_2:69912185-69912204 | Msa0785120:intron | 30.0% |
| ! | CTTTTCTTTCTTTGCTTACA+GGG | - | chr5_2:69912186-69912205 | Msa0785120:intron | 30.0% |
| !!! | TCCTTGTAACACTGTTTTTA+GGG | + | chr5_2:69912271-69912290 | None:intergenic | 30.0% |
| !! | TTCCTTGTAACACTGTTTTT+AGG | + | chr5_2:69912272-69912291 | None:intergenic | 30.0% |
| ! | GAATTTTGCTTTCATCTGAA+GGG | - | chr5_2:69912289-69912308 | Msa0785120:intron | 30.0% |
| TATGAACCTTCTACTTTACA+TGG | - | chr5_2:69912423-69912442 | Msa0785120:intron | 30.0% | |
| ATTGACAAAATATGCAAGTG+CGG | + | chr5_2:69912569-69912588 | None:intergenic | 30.0% | |
| !!! | TGTCAATCTGACCAATTTTT+TGG | - | chr5_2:69912582-69912601 | Msa0785120:intron | 30.0% |
| ! | AAATTGACATCCTTAGTTCT+AGG | + | chr5_2:69912932-69912951 | None:intergenic | 30.0% |
| GATTCAGATCATTAGATTTC+TGG | - | chr5_2:69913039-69913058 | Msa0785120:intron | 30.0% | |
| !! | AACTTTTCCTGATCTAGAAT+AGG | + | chr5_2:69913201-69913220 | None:intergenic | 30.0% |
| ! | ATCCAAGAGTTTGTTCATAT+AGG | - | chr5_2:69913344-69913363 | Msa0785120:CDS | 30.0% |
| TACCTATATGAACAAACTCT+TGG | + | chr5_2:69913349-69913368 | None:intergenic | 30.0% | |
| ! | AGTTTGTTCATATAGGTACT+TGG | - | chr5_2:69913351-69913370 | Msa0785120:CDS | 30.0% |
| GTTTGTTCATATAGGTACTT+GGG | - | chr5_2:69913352-69913371 | Msa0785120:CDS | 30.0% | |
| TTCAATAAGGCTTTCTATGT+GGG | + | chr5_2:69913634-69913653 | None:intergenic | 30.0% | |
| !! | ACATAGAAAGCCTTATTGAA+GGG | - | chr5_2:69913634-69913653 | Msa0785120:intron | 30.0% |
| TGGACAGTTGCTAATATAAT+GGG | + | chr5_2:69913663-69913682 | None:intergenic | 30.0% | |
| ATAAAACTACACTGCCTAAT+TGG | + | chr5_2:69913885-69913904 | None:intergenic | 30.0% | |
| !! | AATTAGGCAGTGTAGTTTTA+TGG | - | chr5_2:69913884-69913903 | Msa0785120:five_prime_UTR | 30.0% |
| !!! | CAGCGTTTTTTAAGTGTTGA+AGG | + | chr5_2:69909743-69909762 | None:intergenic | 35.0% |
| ! | AAGAAGAAAGTGCAAGGAAA+TGG | - | chr5_2:69909788-69909807 | Msa0785120:three_prime_UTR | 35.0% |
| ATGAGTGAAGGAAAGGTAAA+CGG | + | chr5_2:69909854-69909873 | None:intergenic | 35.0% | |
| GTATTGTATGAGTGAAGGAA+AGG | + | chr5_2:69909861-69909880 | None:intergenic | 35.0% | |
| ATGGATCTATGAAGAGGAAT+GGG | + | chr5_2:69910068-69910087 | None:intergenic | 35.0% | |
| TTGTTCATGGATCTATGAAG+AGG | + | chr5_2:69910074-69910093 | None:intergenic | 35.0% | |
| !!! | GGATTATTGGGTTTTGTTCA+TGG | + | chr5_2:69910087-69910106 | None:intergenic | 35.0% |
| !!! | TCATGGTTTTGGGGATTATT+GGG | + | chr5_2:69910099-69910118 | None:intergenic | 35.0% |
| !!! | TTCATGGTTTTGGGGATTAT+TGG | + | chr5_2:69910100-69910119 | None:intergenic | 35.0% |
| ! | GCTTGATTCTTTCATGGTTT+TGG | + | chr5_2:69910110-69910129 | None:intergenic | 35.0% |
| !! | TTCTGTGTTTCCGTTGTTTT+TGG | - | chr5_2:69910367-69910386 | Msa0785120:intron | 35.0% |
| ATAGCTTGATTAAACGACAC+AGG | + | chr5_2:69910415-69910434 | None:intergenic | 35.0% | |
| !! | GTGTCGTTTAATCAAGCTAT+CGG | - | chr5_2:69910415-69910434 | Msa0785120:intron | 35.0% |
| GCAAAAACCGCAGTAAAAAA+CGG | + | chr5_2:69910451-69910470 | None:intergenic | 35.0% | |
| CGTGTTTGATTGAAATGTGT+CGG | - | chr5_2:69910675-69910694 | Msa0785120:intron | 35.0% | |
| TCATAGACTACATGTATACG+GGG | - | chr5_2:69911341-69911360 | Msa0785120:intron | 35.0% | |
| CCCCAAGTTCAATTACATAT+CGG | + | chr5_2:69911429-69911448 | None:intergenic | 35.0% | |
| CCGATATGTAATTGAACTTG+GGG | - | chr5_2:69911426-69911445 | Msa0785120:CDS | 35.0% | |
| GAAAGTTCATTAACCACTTG+AGG | - | chr5_2:69911465-69911484 | Msa0785120:intron | 35.0% | |
| ATAAAATGGTCAACCTCAAG+TGG | + | chr5_2:69911481-69911500 | None:intergenic | 35.0% | |
| ! | TTTTTATACCCTTGCAACTG+TGG | + | chr5_2:69911625-69911644 | None:intergenic | 35.0% |
| !!! | TGGACTTTGTTTTTAAAGCC+GGG | - | chr5_2:69911673-69911692 | Msa0785120:intron | 35.0% |
| ! | TCAAGTCTTTCCCTTTTAAC+AGG | + | chr5_2:69911708-69911727 | None:intergenic | 35.0% |
| !! | GAAAAGCGTTTGATTTCACA+TGG | + | chr5_2:69912000-69912019 | None:intergenic | 35.0% |
| !!! | TGTTTTTGGTGTTTGGATGA+TGG | - | chr5_2:69912103-69912122 | Msa0785120:intron | 35.0% |
| AACCAAGCTTCCATTTGTTT+GGG | - | chr5_2:69912211-69912230 | Msa0785120:intron | 35.0% | |
| ! | GGAATTTTGCTTTCATCTGA+AGG | - | chr5_2:69912288-69912307 | Msa0785120:intron | 35.0% |
| AATGATCTTCACATCATCTC+TGG | + | chr5_2:69912527-69912546 | None:intergenic | 35.0% | |
| GAGATGATGTGAAGATCATT+TGG | - | chr5_2:69912527-69912546 | Msa0785120:intron | 35.0% | |
| ACAATGGAAAAAAGCTAGGT+TGG | + | chr5_2:69912734-69912753 | None:intergenic | 35.0% | |
| TTTCAAACCTCTTGGAAAAG+AGG | - | chr5_2:69912814-69912833 | Msa0785120:intron | 35.0% | |
| ATCACAAGAACCTAGAACTA+AGG | - | chr5_2:69912919-69912938 | Msa0785120:intron | 35.0% | |
| TTCTTTGTCCATGACATTTC+AGG | - | chr5_2:69913009-69913028 | Msa0785120:intron | 35.0% | |
| CAGTAAAACCTGAAATGTCA+TGG | + | chr5_2:69913020-69913039 | None:intergenic | 35.0% | |
| !! | ATTAGATTTCTGGCAAAAGC+CGG | - | chr5_2:69913049-69913068 | Msa0785120:intron | 35.0% |
| TCAAACACCTATTCTAGATC+AGG | - | chr5_2:69913191-69913210 | Msa0785120:CDS | 35.0% | |
| CACTATAAAGTACAACTCCA+AGG | + | chr5_2:69913470-69913489 | None:intergenic | 35.0% | |
| ! | GAATCACTTGCTTCTCTTTT+TGG | + | chr5_2:69913496-69913515 | None:intergenic | 35.0% |
| TGAGACAATTGTTCAGAATC+AGG | - | chr5_2:69913575-69913594 | Msa0785120:five_prime_UTR | 35.0% | |
| TGTTCAGAATCAGGATGTTA+CGG | - | chr5_2:69913584-69913603 | Msa0785120:five_prime_UTR | 35.0% | |
| TCAATAAGGCTTTCTATGTG+GGG | + | chr5_2:69913633-69913652 | None:intergenic | 35.0% | |
| CTTCAATAAGGCTTTCTATG+TGG | + | chr5_2:69913635-69913654 | None:intergenic | 35.0% | |
| !! | CACATAGAAAGCCTTATTGA+AGG | - | chr5_2:69913633-69913652 | Msa0785120:intron | 35.0% |
| !! | CATAGAAAGCCTTATTGAAG+GGG | - | chr5_2:69913635-69913654 | Msa0785120:intron | 35.0% |
| CTGGACAGTTGCTAATATAA+TGG | + | chr5_2:69913664-69913683 | None:intergenic | 35.0% | |
| ATCATTCACTTACTGGAACT+TGG | + | chr5_2:69913702-69913721 | None:intergenic | 35.0% | |
| TACAGAGATCATTCACTTAC+TGG | + | chr5_2:69913709-69913728 | None:intergenic | 35.0% | |
| GTGGTATATAGTAGCCAATT+AGG | - | chr5_2:69913868-69913887 | Msa0785120:five_prime_UTR | 35.0% | |
| !!! | GCAGTGTAGTTTTATGGTTT+GGG | - | chr5_2:69913890-69913909 | Msa0785120:five_prime_UTR | 35.0% |
| !!! | CAGTGTAGTTTTATGGTTTG+GGG | - | chr5_2:69913891-69913910 | Msa0785120:five_prime_UTR | 35.0% |
| !! | GTGTTGAAGGTGTCAAGAAA+AGG | + | chr5_2:69909730-69909749 | None:intergenic | 40.0% |
| TGAGTGAAGGAAAGGTAAAC+GGG | + | chr5_2:69909853-69909872 | None:intergenic | 40.0% | |
| CATGGATCTATGAAGAGGAA+TGG | + | chr5_2:69910069-69910088 | None:intergenic | 40.0% | |
| GGCTTTGCTTGATTCTTTCA+TGG | + | chr5_2:69910116-69910135 | None:intergenic | 40.0% | |
| GGAGATACTTGTTTAGGAGT+AGG | + | chr5_2:69910186-69910205 | None:intergenic | 40.0% | |
| GACACATGGTGAGGAAAATT+GGG | + | chr5_2:69910231-69910250 | None:intergenic | 40.0% | |
| TGACACATGGTGAGGAAAAT+TGG | + | chr5_2:69910232-69910251 | None:intergenic | 40.0% | |
| GATTGCAACGTAGCTGAATA+AGG | + | chr5_2:69910269-69910288 | None:intergenic | 40.0% | |
| TGCAATCGCTTGGTTCAAAA+TGG | - | chr5_2:69910282-69910301 | Msa0785120:CDS | 40.0% | |
| !!! | TACTACGCCGTTTTTTACTG+CGG | - | chr5_2:69910441-69910460 | Msa0785120:intron | 40.0% |
| ! | ATGATAACGCCAGTAACAAC+AGG | + | chr5_2:69910526-69910545 | None:intergenic | 40.0% |
| TGTCGGTGATCATATAGTGT+CGG | - | chr5_2:69910692-69910711 | Msa0785120:intron | 40.0% | |
| GTGTAATTGACAAATGAGGG+TGG | - | chr5_2:69911099-69911118 | Msa0785120:CDS | 40.0% | |
| TCTGTGTCTATATCCAAGCT+AGG | + | chr5_2:69911172-69911191 | None:intergenic | 40.0% | |
| GTCAGTGTCTATGTCATGTA+CGG | + | chr5_2:69911197-69911216 | None:intergenic | 40.0% | |
| !! | GGTATTCTGAAGCTAGATCA+AGG | - | chr5_2:69911519-69911538 | Msa0785120:intron | 40.0% |
| TACAGTTCTCTGCACTTTGA+AGG | + | chr5_2:69911576-69911595 | None:intergenic | 40.0% | |
| TGTCTTTAACCACAGTTGCA+AGG | - | chr5_2:69911613-69911632 | Msa0785120:intron | 40.0% | |
| GTCTTTAACCACAGTTGCAA+GGG | - | chr5_2:69911614-69911633 | Msa0785120:intron | 40.0% | |
| AAAGTCCAAAACCGCGATTT+GGG | + | chr5_2:69911661-69911680 | None:intergenic | 40.0% | |
| ! | GAGCTAGTCTCCTGTTAAAA+GGG | - | chr5_2:69911695-69911714 | Msa0785120:intron | 40.0% |
| !! | CTTGTGCCGATTCTAACTAT+TGG | - | chr5_2:69911794-69911813 | Msa0785120:intron | 40.0% |
| TTCACTTCGCAGTTACTAAC+AGG | - | chr5_2:69912017-69912036 | Msa0785120:intron | 40.0% | |
| !!! | CGTTCTCTGTTTTTGGTGTT+TGG | - | chr5_2:69912096-69912115 | Msa0785120:intron | 40.0% |
| GAACCAAGCTTCCATTTGTT+TGG | - | chr5_2:69912210-69912229 | Msa0785120:intron | 40.0% | |
| AACCCAAACAAATGGAAGCT+TGG | + | chr5_2:69912216-69912235 | None:intergenic | 40.0% | |
| GCCCTAAAAACAGTGTTACA+AGG | - | chr5_2:69912267-69912286 | Msa0785120:intron | 40.0% | |
| ! | TGACATCCTTGTTGTGTCTT+AGG | - | chr5_2:69912386-69912405 | Msa0785120:intron | 40.0% |
| ! | GACATCCTTGTTGTGTCTTA+GGG | - | chr5_2:69912387-69912406 | Msa0785120:intron | 40.0% |
| TTGGAGCCATGTAAAGTAGA+AGG | + | chr5_2:69912432-69912451 | None:intergenic | 40.0% | |
| TCTACTTTACATGGCTCCAA+TGG | - | chr5_2:69912432-69912451 | Msa0785120:intron | 40.0% | |
| AGAAGGAAAACAACAGCCAT+TGG | + | chr5_2:69912451-69912470 | None:intergenic | 40.0% | |
| TATAGAGTGTAGCAGGAAGA+AGG | + | chr5_2:69912468-69912487 | None:intergenic | 40.0% | |
| TCTTCCTGCTACACTCTATA+TGG | - | chr5_2:69912468-69912487 | Msa0785120:intron | 40.0% | |
| TCTTCCATATAGAGTGTAGC+AGG | + | chr5_2:69912475-69912494 | None:intergenic | 40.0% | |
| AAAAGGGAGACATACCTGAA+GGG | + | chr5_2:69912632-69912651 | None:intergenic | 40.0% | |
| TACTGATAGCAACTCTACGT+CGG | + | chr5_2:69912989-69913008 | None:intergenic | 40.0% | |
| CAACAAAAAATTGCAGCAGC+CGG | + | chr5_2:69913071-69913090 | None:intergenic | 40.0% | |
| GGATGAGCGAGTAGATATAT+TGG | - | chr5_2:69913242-69913261 | Msa0785120:CDS | 40.0% | |
| TAGGTACTTGGGAATGCTAA+AGG | - | chr5_2:69913363-69913382 | Msa0785120:CDS | 40.0% | |
| AGGTACTTGGGAATGCTAAA+GGG | - | chr5_2:69913364-69913383 | Msa0785120:CDS | 40.0% | |
| TCATTCCAGTGACTGAAACT+GGG | + | chr5_2:69913428-69913447 | None:intergenic | 40.0% | |
| ATCATTCCAGTGACTGAAAC+TGG | + | chr5_2:69913429-69913448 | None:intergenic | 40.0% | |
| AGTTTCAGTCACTGGAATGA+TGG | - | chr5_2:69913428-69913447 | Msa0785120:CDS | 40.0% | |
| GTTTCAGTCACTGGAATGAT+GGG | - | chr5_2:69913429-69913448 | Msa0785120:CDS | 40.0% | |
| TAATGGGAACCCCTTCAATA+AGG | + | chr5_2:69913647-69913666 | None:intergenic | 40.0% | |
| AACTGTCCAGAAATAGCTCA+TGG | - | chr5_2:69913674-69913693 | Msa0785120:intron | 40.0% | |
| ! | TTGGTACCATGAGCTATTTC+TGG | + | chr5_2:69913683-69913702 | None:intergenic | 40.0% |
| TCTCTGTAGTATACCCATGT+TGG | - | chr5_2:69913721-69913740 | Msa0785120:intron | 40.0% | |
| ATTCCTCAGTATGCCAACAT+GGG | + | chr5_2:69913737-69913756 | None:intergenic | 40.0% | |
| !!! | GGCAGTGTAGTTTTATGGTT+TGG | - | chr5_2:69913889-69913908 | Msa0785120:five_prime_UTR | 40.0% |
| AACGGGAACGCGTATACAAA+CGG | + | chr5_2:69909836-69909855 | None:intergenic | 45.0% | |
| GCATGGTACTCATCCAACAT+AGG | - | chr5_2:69910157-69910176 | Msa0785120:exon | 45.0% | |
| TAGGAGTAGGACTCCTATGT+TGG | + | chr5_2:69910173-69910192 | None:intergenic | 45.0% | |
| ACATGCTGTCATGTGACACA+TGG | + | chr5_2:69910245-69910264 | None:intergenic | 45.0% | |
| CGAGAACGCATGAATTGCAT+TGG | + | chr5_2:69910310-69910329 | None:intergenic | 45.0% | |
| TGCTATGACGCTCAAAAGAG+AGG | - | chr5_2:69910474-69910493 | Msa0785120:intron | 45.0% | |
| GCTCTTGTTCCTGTTGTTAC+TGG | - | chr5_2:69910514-69910533 | Msa0785120:intron | 45.0% | |
| ACTGGCGTTATCATTGCTAG+TGG | - | chr5_2:69910532-69910551 | Msa0785120:intron | 45.0% | |
| CTGGCGTTATCATTGCTAGT+GGG | - | chr5_2:69910533-69910552 | Msa0785120:intron | 45.0% | |
| TGGCGTTATCATTGCTAGTG+GGG | - | chr5_2:69910534-69910553 | Msa0785120:intron | 45.0% | |
| ! | AGGGGTATGGGAAATGTTTC+TGG | - | chr5_2:69910740-69910759 | Msa0785120:intron | 45.0% |
| TGAATTACAAGGGCCCTCTA+CGG | + | chr5_2:69911070-69911089 | None:intergenic | 45.0% | |
| AAGTCGGAAATAGCCTAGCT+TGG | - | chr5_2:69911156-69911175 | Msa0785120:CDS | 45.0% | |
| TATGAAGAACGCACACTCCT+CGG | + | chr5_2:69911326-69911345 | None:intergenic | 45.0% | |
| TAGATGTTGTGCCCAAATCG+CGG | - | chr5_2:69911647-69911666 | Msa0785120:intron | 45.0% | |
| CAAAGTCCAAAACCGCGATT+TGG | + | chr5_2:69911662-69911681 | None:intergenic | 45.0% | |
| ! | TTTAACAGGAGACTAGCTCC+CGG | + | chr5_2:69911694-69911713 | None:intergenic | 45.0% |
| ! | GGAGCTAGTCTCCTGTTAAA+AGG | - | chr5_2:69911694-69911713 | Msa0785120:intron | 45.0% |
| TCTTTCACATGCCACTCCAT+TGG | + | chr5_2:69911862-69911881 | None:intergenic | 45.0% | |
| ! | TGTGTGGCGTTCTCTGTTTT+TGG | - | chr5_2:69912089-69912108 | Msa0785120:intron | 45.0% |
| CTTCTCCCTAAGACACAACA+AGG | + | chr5_2:69912395-69912414 | None:intergenic | 45.0% | |
| AAATGTGATCGGCATCACGT+TGG | - | chr5_2:69912495-69912514 | Msa0785120:intron | 45.0% | |
| GAAAAGGGAGACATACCTGA+AGG | + | chr5_2:69912633-69912652 | None:intergenic | 45.0% | |
| CAACTAAAAAGACAGCAGGC+AGG | + | chr5_2:69912709-69912728 | None:intergenic | 45.0% | |
| !! | CTGCCTGCTGTCTTTTTAGT+TGG | - | chr5_2:69912707-69912726 | Msa0785120:intron | 45.0% |
| GGACCAACTAAAAAGACAGC+AGG | + | chr5_2:69912713-69912732 | None:intergenic | 45.0% | |
| ACCTCTTGGAAAAGAGGTTC+AGG | - | chr5_2:69912820-69912839 | Msa0785120:intron | 45.0% | |
| CCTCTTGGAAAAGAGGTTCA+GGG | - | chr5_2:69912821-69912840 | Msa0785120:intron | 45.0% | |
| GATCCCTAAAGCCTGTAGTA+GGG | - | chr5_2:69912866-69912885 | Msa0785120:intron | 45.0% | |
| TGAATATGCTGCCCTACTAC+AGG | + | chr5_2:69912880-69912899 | None:intergenic | 45.0% | |
| GGTACTTGGGAATGCTAAAG+GGG | - | chr5_2:69913365-69913384 | Msa0785120:CDS | 45.0% | |
| AGAAACCCAGTTTCAGTCAC+TGG | - | chr5_2:69913420-69913439 | Msa0785120:CDS | 45.0% | |
| GGTTATTCACTCACAGTCCT+TGG | - | chr5_2:69913450-69913469 | Msa0785120:CDS | 45.0% | |
| ATACCCATGTTGGCATACTG+AGG | - | chr5_2:69913731-69913750 | Msa0785120:intron | 45.0% | |
| CATTCCTCAGTATGCCAACA+TGG | + | chr5_2:69913738-69913757 | None:intergenic | 45.0% | |
| ACGGGAACGCGTATACAAAC+GGG | + | chr5_2:69909835-69909854 | None:intergenic | 50.0% | |
| CTGTCATGTGACACATGGTG+AGG | + | chr5_2:69910240-69910259 | None:intergenic | 50.0% | |
| TCAGCTACGTTGCAATCGCT+TGG | - | chr5_2:69910272-69910291 | Msa0785120:CDS | 50.0% | |
| TGACGCTCAAAAGAGAGGCT+TGG | - | chr5_2:69910479-69910498 | Msa0785120:intron | 50.0% | |
| ! | CGGTGATCATATAGTGTCGG+TGG | - | chr5_2:69910695-69910714 | Msa0785120:intron | 50.0% |
| TGACAAATGAGGGTGGACCT+CGG | - | chr5_2:69911106-69911125 | Msa0785120:CDS | 50.0% | |
| TTTCTCTCACCTCAGATCCG+AGG | + | chr5_2:69911126-69911145 | None:intergenic | 50.0% | |
| ! | TTGTGCCCAAATCGCGGTTT+TGG | - | chr5_2:69911653-69911672 | Msa0785120:intron | 50.0% |
| CAAGTGCGGAATTGAACAGC+AGG | + | chr5_2:69912555-69912574 | None:intergenic | 50.0% | |
| ! | CCCTGAACCTCTTTTCCAAG+AGG | + | chr5_2:69912824-69912843 | None:intergenic | 50.0% |
| GGATCCCTAAAGCCTGTAGT+AGG | - | chr5_2:69912865-69912884 | Msa0785120:intron | 50.0% | |
| CTGCCCTACTACAGGCTTTA+GGG | + | chr5_2:69912872-69912891 | None:intergenic | 50.0% | |
| TAAAGGGGCTGTAGCAGTTG+TGG | - | chr5_2:69913380-69913399 | Msa0785120:CDS | 50.0% | |
| GGGAACGCGTATACAAACGG+GGG | + | chr5_2:69909833-69909852 | None:intergenic | 55.0% | |
| CGGGAACGCGTATACAAACG+GGG | + | chr5_2:69909834-69909853 | None:intergenic | 55.0% | |
| GTCGGACACGTGTCTGATAC+TGG | + | chr5_2:69911287-69911306 | None:intergenic | 55.0% | |
| ATCAGACACGTGTCCGACAC+CGG | - | chr5_2:69911289-69911308 | Msa0785120:intron | 55.0% | |
| GGATTAGGTGTGTCCGGTGT+CGG | + | chr5_2:69911305-69911324 | None:intergenic | 55.0% | |
| ! | CTCCTCGGATTAGGTGTGTC+CGG | + | chr5_2:69911311-69911330 | None:intergenic | 55.0% |
| GAACGCACACTCCTCGGATT+AGG | + | chr5_2:69911320-69911339 | None:intergenic | 55.0% | |
| TACCAGTGCTCTCACCCTTC+AGG | - | chr5_2:69912615-69912634 | Msa0785120:intron | 55.0% | |
| ! | TACCTGAAGGGTGAGAGCAC+TGG | + | chr5_2:69912620-69912639 | None:intergenic | 55.0% |
| GCTGCCCTACTACAGGCTTT+AGG | + | chr5_2:69912873-69912892 | None:intergenic | 55.0% | |
| CACCGGACACACCTAATCCG+AGG | - | chr5_2:69911306-69911325 | Msa0785120:intron | 60.0% | |
| GAGGGTGGACCTCGGATCTG+AGG | - | chr5_2:69911114-69911133 | Msa0785120:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 69909720 | 69913964 | 69909720 | ID=Msa0785120;Name=Msa0785120 |
| chr5_2 | mRNA | 69909720 | 69913964 | 69909720 | ID=Msa0785120-mRNA-1;Parent=Msa0785120;Name=Msa0785120-mRNA-1;_AED=0.05;_eAED=0.05;_QI=279|1|1|1|0.75|0.6|5|452|306 |
| chr5_2 | exon | 69909720 | 69910318 | 69909720 | ID=Msa0785120-mRNA-1:exon:21101;Parent=Msa0785120-mRNA-1 |
| chr5_2 | exon | 69911048 | 69911276 | 69911048 | ID=Msa0785120-mRNA-1:exon:21100;Parent=Msa0785120-mRNA-1 |
| chr5_2 | exon | 69911374 | 69911477 | 69911374 | ID=Msa0785120-mRNA-1:exon:21099;Parent=Msa0785120-mRNA-1 |
| chr5_2 | exon | 69913129 | 69913629 | 69913129 | ID=Msa0785120-mRNA-1:exon:21098;Parent=Msa0785120-mRNA-1 |
| chr5_2 | exon | 69913746 | 69913964 | 69913746 | ID=Msa0785120-mRNA-1:exon:21097;Parent=Msa0785120-mRNA-1 |
| chr5_2 | five_prime_UTR | 69913746 | 69913964 | 69913746 | ID=Msa0785120-mRNA-1:five_prime_utr;Parent=Msa0785120-mRNA-1 |
| chr5_2 | five_prime_UTR | 69913570 | 69913629 | 69913570 | ID=Msa0785120-mRNA-1:five_prime_utr;Parent=Msa0785120-mRNA-1 |
| chr5_2 | CDS | 69913129 | 69913569 | 69913129 | ID=Msa0785120-mRNA-1:cds;Parent=Msa0785120-mRNA-1 |
| chr5_2 | CDS | 69911374 | 69911477 | 69911374 | ID=Msa0785120-mRNA-1:cds;Parent=Msa0785120-mRNA-1 |
| chr5_2 | CDS | 69911048 | 69911276 | 69911048 | ID=Msa0785120-mRNA-1:cds;Parent=Msa0785120-mRNA-1 |
| chr5_2 | CDS | 69910172 | 69910318 | 69910172 | ID=Msa0785120-mRNA-1:cds;Parent=Msa0785120-mRNA-1 |
| chr5_2 | three_prime_UTR | 69909720 | 69910171 | 69909720 | ID=Msa0785120-mRNA-1:three_prime_utr;Parent=Msa0785120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
