Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400340 | XP_003617362.1 | 95.791 | 594 | 25 | 0 | 1 | 594 | 1 | 594 | 0.0 | 1121 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400340 | sp|E7BQV0|NPR1_MALHU | 58.152 | 552 | 221 | 5 | 18 | 567 | 18 | 561 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400340 | G7K396 | 95.791 | 594 | 25 | 0 | 1 | 594 | 1 | 594 | 0.0 | 1121 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1400340 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023060 | Msa1400340 | 0.803799 | 2.933391e-49 | -8.615850e-47 |
| Msa0051050 | Msa1400340 | 0.818619 | 1.783111e-52 | -8.615850e-47 |
| Msa0090090 | Msa1400340 | 0.811056 | 8.474013e-51 | -8.615850e-47 |
| Msa0092410 | Msa1400340 | 0.838501 | 2.769898e-57 | -8.615850e-47 |
| Msa0101240 | Msa1400340 | 0.821402 | 4.114810e-53 | -8.615850e-47 |
| Msa1353890 | Msa1400340 | 0.830542 | 2.769775e-55 | -8.615850e-47 |
| Msa1360420 | Msa1400340 | 0.825587 | 4.322486e-54 | -8.615850e-47 |
| Msa1383680 | Msa1400340 | 0.814681 | 1.361089e-51 | -8.615850e-47 |
| Msa1398900 | Msa1400340 | 0.812049 | 5.155306e-51 | -8.615850e-47 |
| Msa1399260 | Msa1400340 | 0.800720 | 1.262562e-48 | -8.615850e-47 |
| Msa1400340 | Msa1408180 | 0.805518 | 1.284028e-49 | -8.615850e-47 |
| Msa1400340 | Msa1416730 | 0.988808 | 1.701481e-175 | -8.615850e-47 |
| Msa1400340 | Msa1418280 | 0.804045 | 2.608175e-49 | -8.615850e-47 |
| Msa1400340 | Msa1424630 | 0.810807 | 9.593260e-51 | -8.615850e-47 |
| Msa1400340 | Msa1428070 | 0.800235 | 1.584859e-48 | -8.615850e-47 |
| Msa1400340 | Msa1430550 | 0.862834 | 3.827478e-64 | -8.615850e-47 |
| Msa1400340 | Msa1439650 | 0.812939 | 3.293753e-51 | -8.615850e-47 |
| Msa1400340 | Msa1448980 | 0.804712 | 1.893769e-49 | -8.615850e-47 |
| Msa0614380 | Msa1400340 | 0.856976 | 2.234518e-62 | -8.615850e-47 |
| Msa0614920 | Msa1400340 | 0.805761 | 1.141912e-49 | -8.615850e-47 |
| Msa0631330 | Msa1400340 | 0.801162 | 1.025425e-48 | -8.615850e-47 |
| Msa0662580 | Msa1400340 | 0.812477 | 4.157758e-51 | -8.615850e-47 |
| Msa0697010 | Msa1400340 | 0.802903 | 4.499110e-49 | -8.615850e-47 |
| Msa0697590 | Msa1400340 | 0.817118 | 3.892125e-52 | -8.615850e-47 |
| Msa0708310 | Msa1400340 | 0.832479 | 9.234459e-56 | -8.615850e-47 |
| Msa0733010 | Msa1400340 | 0.835621 | 1.508609e-56 | -8.615850e-47 |
| Msa0742210 | Msa1400340 | 0.803353 | 3.629501e-49 | -8.615850e-47 |
| Msa0742430 | Msa1400340 | 0.822010 | 2.977477e-53 | -8.615850e-47 |
| Msa0753930 | Msa1400340 | 0.803689 | 3.091935e-49 | -8.615850e-47 |
| Msa0773990 | Msa1400340 | 0.826310 | 2.910772e-54 | -8.615850e-47 |
| Msa0782960 | Msa1400340 | 0.809707 | 1.656134e-50 | -8.615850e-47 |
| Msa0785120 | Msa1400340 | 0.821909 | 3.142083e-53 | -8.615850e-47 |
| Msa0786980 | Msa1400340 | 0.949722 | 7.143210e-108 | -8.615850e-47 |
| Msa0794210 | Msa1400340 | 0.809071 | 2.268000e-50 | -8.615850e-47 |
| Msa0822350 | Msa1400340 | 0.945270 | 4.176692e-104 | -8.615850e-47 |
| Msa0823540 | Msa1400340 | 0.822291 | 2.562937e-53 | -8.615850e-47 |
| Msa0828240 | Msa1400340 | 0.817522 | 3.156463e-52 | -8.615850e-47 |
| Msa0137560 | Msa1400340 | 0.801423 | 9.068118e-49 | -8.615850e-47 |
| Msa0215590 | Msa1400340 | 0.800967 | 1.124215e-48 | -8.615850e-47 |
| Msa0227340 | Msa1400340 | 0.809074 | 2.264766e-50 | -8.615850e-47 |
| Msa1281690 | Msa1400340 | 0.811845 | 5.711367e-51 | -8.615850e-47 |
| Msa1325060 | Msa1400340 | 0.801969 | 7.005185e-49 | -8.615850e-47 |
| Msa0371460 | Msa1400340 | 0.836239 | 1.051346e-56 | -8.615850e-47 |
| Msa0408340 | Msa1400340 | 0.881496 | 2.287343e-70 | -8.615850e-47 |
| Msa0416660 | Msa1400340 | 0.801640 | 8.184931e-49 | -8.615850e-47 |
| Msa0419670 | Msa1400340 | 0.842486 | 2.511106e-58 | -8.615850e-47 |
| Msa0443020 | Msa1400340 | 0.854819 | 9.547522e-62 | -8.615850e-47 |
| Msa0450180 | Msa1400340 | 0.813032 | 3.142116e-51 | -8.615850e-47 |
| Msa0463270 | Msa1400340 | 0.826570 | 2.522546e-54 | -8.615850e-47 |
| Msa0480930 | Msa1400340 | 0.803147 | 4.005034e-49 | -8.615850e-47 |
| Msa0992640 | Msa1400340 | 0.841145 | 5.675958e-58 | -8.615850e-47 |
| Msa0992680 | Msa1400340 | 0.842269 | 2.867201e-58 | -8.615850e-47 |
| Msa0999680 | Msa1400340 | 0.819138 | 1.359434e-52 | -8.615850e-47 |
| Msa1017160 | Msa1400340 | 0.806488 | 8.026691e-50 | -8.615850e-47 |
| Msa1043120 | Msa1400340 | 0.884527 | 1.776836e-71 | -8.615850e-47 |
| Msa1084640 | Msa1400340 | 0.999011 | 6.410677e-286 | -8.615850e-47 |
| Msa0244880 | Msa1400340 | 0.826839 | 2.176652e-54 | -8.615850e-47 |
| Msa0244890 | Msa1400340 | 0.831475 | 1.634214e-55 | -8.615850e-47 |
| Msa0244900 | Msa1400340 | 0.812795 | 3.542355e-51 | -8.615850e-47 |
| Msa0264830 | Msa1400340 | 0.809973 | 1.451858e-50 | -8.615850e-47 |
| Msa0267790 | Msa1400340 | 0.809687 | 1.672907e-50 | -8.615850e-47 |
| Msa0269560 | Msa1400340 | 0.847481 | 1.125355e-59 | -8.615850e-47 |
| Msa0271550 | Msa1400340 | 0.804881 | 1.745812e-49 | -8.615850e-47 |
| Msa0283470 | Msa1400340 | 0.838664 | 2.514850e-57 | -8.615850e-47 |
| Msa0283490 | Msa1400340 | 0.817197 | 3.736037e-52 | -8.615850e-47 |
| Msa0283500 | Msa1400340 | 0.834439 | 2.994890e-56 | -8.615850e-47 |
| Msa0302870 | Msa1400340 | 0.818180 | 2.242337e-52 | -8.615850e-47 |
| Msa0305840 | Msa1400340 | 0.826661 | 2.400223e-54 | -8.615850e-47 |
| Msa0331980 | Msa1400340 | 0.836122 | 1.126145e-56 | -8.615850e-47 |
| Msa0333650 | Msa1400340 | 0.804513 | 2.083381e-49 | -8.615850e-47 |
| Msa0340340 | Msa1400340 | 0.812365 | 4.398415e-51 | -8.615850e-47 |
| Msa0348550 | Msa1400340 | 0.819420 | 1.172548e-52 | -8.615850e-47 |
| Msa1120930 | Msa1400340 | 0.809769 | 1.606747e-50 | -8.615850e-47 |
| Msa1207890 | Msa1400340 | 0.805064 | 1.598874e-49 | -8.615850e-47 |
| Msa0490380 | Msa1400340 | 0.840376 | 9.023584e-58 | -8.615850e-47 |
| Msa0501410 | Msa1400340 | 0.853812 | 1.865015e-61 | -8.615850e-47 |
| Msa0506860 | Msa1400340 | 0.848389 | 6.324858e-60 | -8.615850e-47 |
| Msa0508880 | Msa1400340 | 0.810425 | 1.160010e-50 | -8.615850e-47 |
| Msa0511620 | Msa1400340 | 0.847014 | 1.511754e-59 | -8.615850e-47 |
| Msa0546520 | Msa1400340 | 0.802530 | 5.371067e-49 | -8.615850e-47 |
| Msa0562570 | Msa1400340 | 0.813029 | 3.147709e-51 | -8.615850e-47 |
| Msa0574600 | Msa1400340 | 0.817032 | 4.070195e-52 | -8.615850e-47 |
| Msa0580920 | Msa1400340 | 0.804445 | 2.152525e-49 | -8.615850e-47 |
| Msa0862620 | Msa1400340 | 0.839243 | 1.780218e-57 | -8.615850e-47 |
| Msa0865970 | Msa1400340 | 0.807859 | 4.115116e-50 | -8.615850e-47 |
| Msa0866070 | Msa1400340 | 0.806123 | 9.584062e-50 | -8.615850e-47 |
| Msa0899970 | Msa1400340 | 0.803903 | 2.790863e-49 | -8.615850e-47 |
| Msa0958080 | Msa1400340 | 0.821810 | 3.312155e-53 | -8.615850e-47 |
| Msa0965290 | Msa1400340 | 0.814846 | 1.251310e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400340 | MtrunA17_Chr5g0442661 | 95.791 | 594 | 25 | 0 | 1 | 594 | 1 | 594 | 0.0 | 1121 |
| Msa1400340 | MtrunA17_Chr2g0291741 | 59.891 | 551 | 212 | 4 | 18 | 565 | 19 | 563 | 0.0 | 669 |
| Msa1400340 | MtrunA17_Chr2g0299621 | 39.367 | 569 | 313 | 11 | 10 | 565 | 6 | 555 | 8.84e-121 | 369 |
| Msa1400340 | MtrunA17_Chr1g0171771 | 32.300 | 387 | 227 | 9 | 54 | 408 | 2 | 385 | 2.36e-49 | 178 |
| Msa1400340 | MtrunA17_Chr7g0256321 | 32.877 | 365 | 221 | 9 | 66 | 408 | 24 | 386 | 3.34e-48 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400340 | AT5G45110.1 | 52.820 | 532 | 231 | 6 | 42 | 562 | 35 | 557 | 0.0 | 550 |
| Msa1400340 | AT4G19660.1 | 52.007 | 548 | 228 | 9 | 33 | 562 | 20 | 550 | 0.0 | 525 |
| Msa1400340 | AT4G19660.2 | 49.565 | 575 | 228 | 10 | 33 | 562 | 20 | 577 | 4.65e-175 | 509 |
| Msa1400340 | AT5G45110.2 | 51.915 | 470 | 210 | 5 | 42 | 504 | 35 | 495 | 3.47e-164 | 478 |
| Msa1400340 | AT1G64280.1 | 37.925 | 559 | 320 | 8 | 23 | 565 | 15 | 562 | 1.41e-114 | 354 |
| Msa1400340 | AT4G26120.2 | 37.543 | 586 | 337 | 12 | 16 | 590 | 16 | 583 | 8.57e-112 | 347 |
| Msa1400340 | AT4G26120.1 | 37.543 | 586 | 337 | 12 | 16 | 590 | 15 | 582 | 9.48e-112 | 347 |
| Msa1400340 | AT3G57130.1 | 32.300 | 387 | 241 | 9 | 40 | 408 | 1 | 384 | 1.21e-51 | 184 |
| Msa1400340 | AT2G41370.1 | 32.703 | 370 | 219 | 9 | 66 | 408 | 25 | 391 | 4.89e-48 | 175 |
| Msa1400340 | AT3G57130.2 | 31.737 | 167 | 101 | 4 | 40 | 197 | 1 | 163 | 2.63e-18 | 83.6 |
Find 129 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTTTCTCTTTCCTTTCT+TGG | 0.106064 | tig0022441:-33295 | Msa1400340:five_prime_UTR |
| CAAGGGATTGTAATCTTAAT+TGG | 0.155412 | tig0022441:+30170 | None:intergenic |
| TTTCTTGGTCATGGCTTCTT+TGG | 0.210120 | tig0022441:-33280 | Msa1400340:five_prime_UTR |
| AATTGTTTGACATGGTTTCT+AGG | 0.213691 | tig0022441:+29552 | None:intergenic |
| GAGCCTTGTCAACAAAATTT+AGG | 0.226635 | tig0022441:+31408 | None:intergenic |
| TGACATGGACATCATATATT+TGG | 0.235777 | tig0022441:-31294 | Msa1400340:CDS |
| TAGAACCCCTTAAGCATTCT+TGG | 0.238659 | tig0022441:-33246 | Msa1400340:five_prime_UTR |
| TTTGTATACTGGAAAGTTAA+AGG | 0.276961 | tig0022441:-32274 | Msa1400340:CDS |
| AAAGCAACATAGCATCTTAT+TGG | 0.277580 | tig0022441:+29662 | None:intergenic |
| TTCTTGCATTATTTGTATAC+TGG | 0.287135 | tig0022441:-32285 | Msa1400340:CDS |
| AGTAGTTGCTATATAAGTTT+TGG | 0.295240 | tig0022441:-29735 | Msa1400340:three_prime_UTR |
| GCAACTACTCTTGAACAAAA+TGG | 0.299646 | tig0022441:+29749 | None:intergenic |
| TCAACACATGTTGTCACTTC+TGG | 0.315551 | tig0022441:+32243 | None:intergenic |
| TCATGGCTTCTTTGGTTGAA+TGG | 0.319082 | tig0022441:-33272 | Msa1400340:five_prime_UTR |
| ATAACCATGTAATATAATTA+AGG | 0.321063 | tig0022441:-29585 | Msa1400340:three_prime_UTR |
| TGATGTGCAGCCATTAAAAT+TGG | 0.325931 | tig0022441:+31368 | None:intergenic |
| AGGAAAAGATGAAGAAGTTA+AGG | 0.328401 | tig0022441:-32385 | Msa1400340:CDS |
| TTGTGCATATTGTGATTCTA+AGG | 0.357367 | tig0022441:-31048 | Msa1400340:CDS |
| CATTGCCACATGTTCATTGT+TGG | 0.365929 | tig0022441:+32581 | None:intergenic |
| TCTCTTTCCTTTCTTGGTCA+TGG | 0.367151 | tig0022441:-33289 | Msa1400340:five_prime_UTR |
| GCATCAGAAACCACTCTTGA+TGG | 0.370481 | tig0022441:-30891 | Msa1400340:CDS |
| AAATGATGAGAGAGATTGTT+TGG | 0.375136 | tig0022441:+33344 | None:intergenic |
| AAAGTCTTCAATTGAGTCAA+TGG | 0.377354 | tig0022441:+32716 | None:intergenic |
| TATACAAAGATAGAAATATA+TGG | 0.381162 | tig0022441:+33212 | None:intergenic |
| GTTCAAGAAGTTCTTACTCT+TGG | 0.391310 | tig0022441:-31023 | Msa1400340:CDS |
| AACGAAGAAAGCACGGTTCA+TGG | 0.394343 | tig0022441:-29912 | Msa1400340:CDS |
| AGTCCATTGGGAGAAATTAC+AGG | 0.395594 | tig0022441:+29498 | None:intergenic |
| TGGTATTCATCGATGTATAT+TGG | 0.399098 | tig0022441:-32445 | Msa1400340:CDS |
| ATCTGCCCCAGCATTCTCTA+TGG | 0.400544 | tig0022441:+30285 | None:intergenic |
| CGTCAGAGTCCAATGCCTTA+AGG | 0.406730 | tig0022441:+31144 | None:intergenic |
| TGCAAGTTCAACAGCTTTGA+AGG | 0.409850 | tig0022441:-30248 | Msa1400340:CDS |
| AAGGTATCTCATGAAAGATT+TGG | 0.411203 | tig0022441:-32346 | Msa1400340:CDS |
| GGTTCCACTTCCATTGCATC+TGG | 0.423349 | tig0022441:+31200 | None:intergenic |
| ATTGCATCTGGTGTTGATTC+CGG | 0.423636 | tig0022441:+31212 | None:intergenic |
| GAAGGCATTTCACAAGGATA+TGG | 0.425039 | tig0022441:-29870 | Msa1400340:CDS |
| GACTCAGTTACCAACATCAT+TGG | 0.426624 | tig0022441:-33367 | Msa1400340:five_prime_UTR |
| CTTCTTCCGTTCCCTTCTCT+AGG | 0.435165 | tig0022441:+29942 | None:intergenic |
| AAAGAAGCCATGACCAAGAA+AGG | 0.450044 | tig0022441:+33282 | None:intergenic |
| CTTTGATTTACTTGAGGTCA+TGG | 0.459651 | tig0022441:-32697 | Msa1400340:exon |
| CATCTTCAATCTCAAATCAA+AGG | 0.462304 | tig0022441:-33098 | Msa1400340:five_prime_UTR |
| GTGTTGATTCCGGCAGAGAT+TGG | 0.467675 | tig0022441:+31222 | None:intergenic |
| TCCAAAGCAAAATTGATAGC+AGG | 0.467829 | tig0022441:+32192 | None:intergenic |
| ATCTTCAATCTCAAATCAAA+GGG | 0.468826 | tig0022441:-33097 | Msa1400340:five_prime_UTR |
| TGTTGGTAACTGAGTCTAAT+GGG | 0.469273 | tig0022441:+33374 | None:intergenic |
| TTTGCACCAAGAATGCTTAA+GGG | 0.475059 | tig0022441:+33240 | None:intergenic |
| TGTTCTTTCCTGCTGAGGCA+AGG | 0.476184 | tig0022441:-30312 | Msa1400340:CDS |
| TGTATCCACGAGGATTCTTA+AGG | 0.478040 | tig0022441:+30985 | None:intergenic |
| ATGGCTACCCTTGCCTCAGC+AGG | 0.479921 | tig0022441:+30304 | None:intergenic |
| AGTTCCTTAATTATATTACA+TGG | 0.483900 | tig0022441:+29581 | None:intergenic |
| AGAAGTTCTTACTCTTGGAT+TGG | 0.484032 | tig0022441:-31018 | Msa1400340:CDS |
| AAATCTTTCATGAGATACCT+TGG | 0.484404 | tig0022441:+32348 | None:intergenic |
| CTCTTATCATTCACAGTCAC+AGG | 0.484685 | tig0022441:+31179 | None:intergenic |
| GTTCTTTCCTGCTGAGGCAA+GGG | 0.487551 | tig0022441:-30311 | Msa1400340:CDS |
| AAAGATGAAGAAGTTAAGGA+TGG | 0.488807 | tig0022441:-32381 | Msa1400340:CDS |
| CTGTGAATGATAAGAGTGTC+AGG | 0.490919 | tig0022441:-31172 | Msa1400340:CDS |
| ATGTTGGTAACTGAGTCTAA+TGG | 0.492568 | tig0022441:+33373 | None:intergenic |
| GAGTGTCAGGAAAATCCTTA+AGG | 0.494210 | tig0022441:-31159 | Msa1400340:CDS |
| CACATGTTCATTGTTGGTTG+AGG | 0.498708 | tig0022441:+32587 | None:intergenic |
| TTGGTGCCTTGTGGTAGTGT+TGG | 0.499790 | tig0022441:-32327 | Msa1400340:CDS |
| AGTTACAACACTACATCAAA+AGG | 0.500386 | tig0022441:+29712 | None:intergenic |
| CAGGAAAATCCTTAAGGCAT+TGG | 0.500644 | tig0022441:-31153 | Msa1400340:CDS |
| GGGTAGCCATAGAGAATGCT+GGG | 0.504854 | tig0022441:-30291 | Msa1400340:CDS |
| CCTCCGAGTCCAATCTCTGC+CGG | 0.505391 | tig0022441:-31231 | Msa1400340:CDS |
| TGAAGAAGTTAAGGATGGAA+AGG | 0.507059 | tig0022441:-32376 | Msa1400340:CDS |
| ATACATCGATGAATACCAAC+AGG | 0.509934 | tig0022441:+32450 | None:intergenic |
| GAAGAAGTTAAGGATGGAAA+GGG | 0.513248 | tig0022441:-32375 | Msa1400340:CDS |
| AGGGTAGCCATAGAGAATGC+TGG | 0.515215 | tig0022441:-30292 | Msa1400340:CDS |
| TTTCAATAGTGCAACCAAGA+TGG | 0.516370 | tig0022441:+30926 | None:intergenic |
| TGCATTGTCTTCTACATCAT+CGG | 0.516416 | tig0022441:-29819 | Msa1400340:CDS |
| TACATCATCGGCAAGTCGTA+GGG | 0.521228 | tig0022441:-29807 | Msa1400340:CDS |
| ACGAAAGGATCCATCCATCT+TGG | 0.521666 | tig0022441:-30940 | Msa1400340:CDS |
| TCACGTTGCCGCAAGACGAA+AGG | 0.524031 | tig0022441:-30955 | Msa1400340:CDS |
| GAATGCAATGAGAGAGAAGC+TGG | 0.524808 | tig0022441:+31333 | None:intergenic |
| AAGTTCTATGTCAGTGAACA+TGG | 0.525587 | tig0022441:-30742 | Msa1400340:CDS |
| CTACATCATCGGCAAGTCGT+AGG | 0.526560 | tig0022441:-29808 | Msa1400340:CDS |
| AAATTGTGTACAGTTGAGAA+TGG | 0.529000 | tig0022441:-30037 | Msa1400340:intron |
| TGTGTACAGTTGAGAATGGT+AGG | 0.529889 | tig0022441:-30033 | Msa1400340:intron |
| GGATGGATCCTTTCGTCTTG+CGG | 0.530660 | tig0022441:+30947 | None:intergenic |
| CTGGATTACCTTGAAAATAG+AGG | 0.531111 | tig0022441:-30678 | Msa1400340:intron |
| TAGGCTGTTCTTTCCTGCTG+AGG | 0.533770 | tig0022441:-30317 | Msa1400340:CDS |
| AACACCAGATGCAATGGAAG+TGG | 0.536591 | tig0022441:-31204 | Msa1400340:CDS |
| GGAAGGAGTCTCACAAGGAT+AGG | 0.544010 | tig0022441:-30800 | Msa1400340:CDS |
| CTTGTTGAAGAAATTCCTGT+TGG | 0.546823 | tig0022441:-32465 | Msa1400340:CDS |
| ATGTTGCAGTTGCATTTGCT+AGG | 0.553352 | tig0022441:-30336 | Msa1400340:intron |
| GAAAGTGAGACAATGAACTA+AGG | 0.555346 | tig0022441:+33310 | None:intergenic |
| CATCACTCAATAACTTCTCA+AGG | 0.556447 | tig0022441:+32517 | None:intergenic |
| GTATCTAGACGATGATATGC+CGG | 0.557917 | tig0022441:-29975 | Msa1400340:CDS |
| CGGCAGAGATTGGACTCGGA+GGG | 0.559848 | tig0022441:+31232 | None:intergenic |
| TGAAGACTTTGATTTACTTG+AGG | 0.560167 | tig0022441:-32703 | Msa1400340:five_prime_UTR |
| TCAGAGATTGACGAGGCGAA+AGG | 0.561716 | tig0022441:-30847 | Msa1400340:CDS |
| ATTCCGGCAGAGATTGGACT+CGG | 0.564498 | tig0022441:+31228 | None:intergenic |
| AGCAGAGAACGAAGAAAGCA+CGG | 0.564815 | tig0022441:-29919 | Msa1400340:CDS |
| CAAGCACCTCAGAACAATGC+GGG | 0.572417 | tig0022441:+30002 | None:intergenic |
| AATAGTGCAACCAAGATGGA+TGG | 0.572602 | tig0022441:+30930 | None:intergenic |
| ATGGCTGAAAATAACCAAGC+AGG | 0.574550 | tig0022441:-29851 | Msa1400340:CDS |
| TTGAGATGATACAAAACTCA+AGG | 0.576016 | tig0022441:+32647 | None:intergenic |
| GGAATCAACACCAGATGCAA+TGG | 0.582737 | tig0022441:-31210 | Msa1400340:CDS |
| TTGCACCAAGAATGCTTAAG+GGG | 0.583899 | tig0022441:+33241 | None:intergenic |
| CCAAAGCAAAATTGATAGCA+GGG | 0.584439 | tig0022441:+32193 | None:intergenic |
| TGATGATTTACACATGAGAC+TGG | 0.587404 | tig0022441:-30697 | Msa1400340:CDS |
| AGCAGTTTGTCCATCAAGAG+TGG | 0.589661 | tig0022441:+30881 | None:intergenic |
| ACTTAAAGATGAGGTGCAGA+AGG | 0.589892 | tig0022441:-29888 | Msa1400340:CDS |
| CAACAATGAACATGTGGCAA+TGG | 0.591956 | tig0022441:-32580 | Msa1400340:CDS |
| CATGTTGTCACTTCTGGTGG+TGG | 0.593704 | tig0022441:+32249 | None:intergenic |
| GCAACTAAAATTGTTTGACA+TGG | 0.594533 | tig0022441:+29544 | None:intergenic |
| CAATTTGTCAGAGATTGACG+AGG | 0.597048 | tig0022441:-30854 | Msa1400340:CDS |
| GATTGTTTGGCCAATGATGT+TGG | 0.597492 | tig0022441:+33357 | None:intergenic |
| GCAAGTTCAACAGCTTTGAA+GGG | 0.599785 | tig0022441:-30247 | Msa1400340:CDS |
| ATTTCAGTCATAACTTCATG+AGG | 0.607057 | tig0022441:+31260 | None:intergenic |
| GAGAGTCGTAAGGTCTGACA+TGG | 0.616876 | tig0022441:-31309 | Msa1400340:CDS |
| CTCAACCAACAATGAACATG+TGG | 0.620410 | tig0022441:-32586 | Msa1400340:CDS |
| TAAGAATCCTCGTGGATACA+CGG | 0.628927 | tig0022441:-30982 | Msa1400340:CDS |
| ACAAGCATAGTGTAGTGCAT+AGG | 0.635531 | tig0022441:+31067 | None:intergenic |
| GTTCATGGAACTTAAAGATG+AGG | 0.636671 | tig0022441:-29897 | Msa1400340:CDS |
| ATGAAAGATTTGGTGCCTTG+TGG | 0.641714 | tig0022441:-32336 | Msa1400340:CDS |
| AAAGTCTTAACCACAAAGTG+AGG | 0.653570 | tig0022441:-29784 | Msa1400340:CDS |
| CCGGCAGAGATTGGACTCGG+AGG | 0.654889 | tig0022441:+31231 | None:intergenic |
| GCAGGGGAAGGAGTCTCACA+AGG | 0.661433 | tig0022441:-30805 | Msa1400340:CDS |
| ATTGCATTCAGAGAGTCGTA+AGG | 0.666386 | tig0022441:-31319 | Msa1400340:CDS |
| GGTGCAGAAGGCATTTCACA+AGG | 0.668394 | tig0022441:-29876 | Msa1400340:CDS |
| ATTCTCCTTAAGAATCCTCG+TGG | 0.687759 | tig0022441:-30990 | Msa1400340:CDS |
| GTGAGTTTGAATAAGCTCAG+TGG | 0.700757 | tig0022441:-32543 | Msa1400340:CDS |
| ACACATGTTGTCACTTCTGG+TGG | 0.703043 | tig0022441:+32246 | None:intergenic |
| TCAAGCACCTCAGAACAATG+CGG | 0.711186 | tig0022441:+30001 | None:intergenic |
| GCTGTTGAACTTGCATAGCG+TGG | 0.711386 | tig0022441:+30256 | None:intergenic |
| TCATATCCAACACTACCACA+AGG | 0.723097 | tig0022441:+32321 | None:intergenic |
| GGTAGCCATAGAGAATGCTG+GGG | 0.739957 | tig0022441:-30290 | Msa1400340:CDS |
| TGAAGAACCGTGTATCCACG+AGG | 0.741022 | tig0022441:+30975 | None:intergenic |
| AGGATGGAAAGGGAAAGCCA+AGG | 0.758248 | tig0022441:-32365 | Msa1400340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATCTTGAATATATTTAA+TGG | - | tig0022441:29888-29907 | Msa1400340:CDS | 10.0% |
| !! | TAATCTTGAATATATTTAAT+GGG | - | tig0022441:29889-29908 | Msa1400340:CDS | 10.0% |
| !! | TATACAAAGATAGAAATATA+TGG | + | tig0022441:29668-29687 | None:intergenic | 15.0% |
| !! | AGATTAAGAATTAAAAAGTT+TGG | + | tig0022441:29875-29894 | None:intergenic | 15.0% |
| !! | AAAATGAGCAATAAAAATAA+AGG | + | tig0022441:30811-30830 | None:intergenic | 15.0% |
| !!! | ATTTTATTTATACATTTTGC+AGG | - | tig0022441:31129-31148 | Msa1400340:CDS | 15.0% |
| !!! | TATTTCAAATTTTATTCACT+TGG | + | tig0022441:31187-31206 | None:intergenic | 15.0% |
| !!! | AAAGTTTCATGAAAATATTT+TGG | + | tig0022441:32477-32496 | None:intergenic | 15.0% |
| !! | ATAACCATGTAATATAATTA+AGG | - | tig0022441:33292-33311 | Msa1400340:five_prime_UTR | 15.0% |
| !! | TAAAAGAAAAACTACATACA+TGG | + | tig0022441:29809-29828 | None:intergenic | 20.0% |
| !! | TAAATGAAATTTAATGACCT+TGG | + | tig0022441:29840-29859 | None:intergenic | 20.0% |
| !!! | AAGATTTTCTTATACCATTT+TGG | + | tig0022441:29927-29946 | None:intergenic | 20.0% |
| !!! | AAATCTTAGTTTTTGTTTCA+TGG | - | tig0022441:29940-29959 | Msa1400340:CDS | 20.0% |
| !!! | TTTCATGAACTTTTTAAGAA+AGG | - | tig0022441:30472-30491 | Msa1400340:intron | 20.0% |
| !!! | AATATTTTACGTAGTTTTGT+AGG | + | tig0022441:31053-31072 | None:intergenic | 20.0% |
| !! | AAAGGATTATCATGAAAAAA+CGG | - | tig0022441:32048-32067 | Msa1400340:intron | 20.0% |
| !!! | AATACTTAATGAATTGATTC+TGG | + | tig0022441:32406-32425 | None:intergenic | 20.0% |
| !!! | TTTCATGAAACTTTTGAATT+TGG | - | tig0022441:32483-32502 | Msa1400340:CDS | 20.0% |
| !! | AGTTCCTTAATTATATTACA+TGG | + | tig0022441:33299-33318 | None:intergenic | 20.0% |
| ! | ATCTTCAATCTCAAATCAAA+GGG | - | tig0022441:29780-29799 | Msa1400340:CDS | 25.0% |
| !! | TTTCTTTTAATCTCTTACCA+AGG | - | tig0022441:29820-29839 | Msa1400340:CDS | 25.0% |
| !! | ATATTTAATGGGTCATCAAA+TGG | - | tig0022441:29900-29919 | Msa1400340:CDS | 25.0% |
| ! | CTAGAAGAATTAGAATATGT+TGG | - | tig0022441:30055-30074 | Msa1400340:intron | 25.0% |
| !!! | GAATCTGATTTCTTGTTTTT+TGG | - | tig0022441:30117-30136 | Msa1400340:intron | 25.0% |
| ! | TTCTTGCATTATTTGTATAC+TGG | - | tig0022441:30592-30611 | Msa1400340:intron | 25.0% |
| ! | TTTGTATACTGGAAAGTTAA+AGG | - | tig0022441:30603-30622 | Msa1400340:intron | 25.0% |
| ! | AGCAATAAAAATAAAGGAGA+AGG | + | tig0022441:30805-30824 | None:intergenic | 25.0% |
| !! | AGCTTAGGATTTACATTTTA+CGG | + | tig0022441:30887-30906 | None:intergenic | 25.0% |
| !!! | GTATGTTTACTTTTGATCTA+GGG | - | tig0022441:31008-31027 | Msa1400340:CDS | 25.0% |
| !!! | TATTAGTCTAAGCTAAGTTT+TGG | + | tig0022441:31092-31111 | None:intergenic | 25.0% |
| !! | TTTATACATTTTGCAGGTTT+TGG | - | tig0022441:31135-31154 | Msa1400340:CDS | 25.0% |
| ! | AGCACATCAAATTTATATGA+AGG | + | tig0022441:31239-31258 | None:intergenic | 25.0% |
| ! | ATATAAATTTGATGTGCTGA+CGG | - | tig0022441:31241-31260 | Msa1400340:CDS | 25.0% |
| !!! | CTCAAGTTTTTTTTTTCTTC+CGG | + | tig0022441:31396-31415 | None:intergenic | 25.0% |
| ! | ACATTAGCTCATTTCAAAAA+AGG | + | tig0022441:31419-31438 | None:intergenic | 25.0% |
| !! | AGATGTCATTCCAATTTTAA+TGG | - | tig0022441:31499-31518 | Msa1400340:intron | 25.0% |
| !!! | TTCATGAAAATATTTTGGTG+AGG | + | tig0022441:32472-32491 | None:intergenic | 25.0% |
| ! | TTGAATTTGGAAGCTTATTA+TGG | - | tig0022441:32496-32515 | Msa1400340:CDS | 25.0% |
| ! | ATCTTTATACGAACATCAAA+TGG | - | tig0022441:32789-32808 | Msa1400340:intron | 25.0% |
| ! | TCAACTGTACACAATTTAAT+TGG | + | tig0022441:32837-32856 | None:intergenic | 25.0% |
| !! | AGTAGTTGCTATATAAGTTT+TGG | - | tig0022441:33142-33161 | Msa1400340:five_prime_UTR | 25.0% |
| !!! | CAAACAATTTTAGTTGCAAA+TGG | - | tig0022441:33339-33358 | Msa1400340:five_prime_UTR | 25.0% |
| AAATGATGAGAGAGATTGTT+TGG | + | tig0022441:29536-29555 | None:intergenic | 30.0% | |
| ! | AATCTCTCTCATCATTTTGT+TGG | - | tig0022441:29539-29558 | Msa1400340:three_prime_UTR | 30.0% |
| ! | ATCTCTCTCATCATTTTGTT+GGG | - | tig0022441:29540-29559 | Msa1400340:three_prime_UTR | 30.0% |
| CATCTTCAATCTCAAATCAA+AGG | - | tig0022441:29779-29798 | Msa1400340:CDS | 30.0% | |
| !! | GTTTTTGTTTCATGGAATGA+TGG | - | tig0022441:29948-29967 | Msa1400340:CDS | 30.0% |
| AAAGTCTTCAATTGAGTCAA+TGG | + | tig0022441:30164-30183 | None:intergenic | 30.0% | |
| ! | TGAAGACTTTGATTTACTTG+AGG | - | tig0022441:30174-30193 | Msa1400340:CDS | 30.0% |
| TTGAGATGATACAAAACTCA+AGG | + | tig0022441:30233-30252 | None:intergenic | 30.0% | |
| TGGTATTCATCGATGTATAT+TGG | - | tig0022441:30432-30451 | Msa1400340:intron | 30.0% | |
| AGGAAAAGATGAAGAAGTTA+AGG | - | tig0022441:30492-30511 | Msa1400340:intron | 30.0% | |
| AAAGATGAAGAAGTTAAGGA+TGG | - | tig0022441:30496-30515 | Msa1400340:intron | 30.0% | |
| AAATCTTTCATGAGATACCT+TGG | + | tig0022441:30532-30551 | None:intergenic | 30.0% | |
| ! | AAGGTATCTCATGAAAGATT+TGG | - | tig0022441:30531-30550 | Msa1400340:intron | 30.0% |
| CCTTTCTAATATTCAAGCTT+AGG | + | tig0022441:30902-30921 | None:intergenic | 30.0% | |
| CCTAAGCTTGAATATTAGAA+AGG | - | tig0022441:30899-30918 | Msa1400340:CDS | 30.0% | |
| !! | CGTATGTTTACTTTTGATCT+AGG | - | tig0022441:31007-31026 | Msa1400340:CDS | 30.0% |
| ACTAATAAGCAACATCAGAT+TGG | - | tig0022441:31105-31124 | Msa1400340:CDS | 30.0% | |
| ! | TTCTTTTCCTTTGTGCTATA+TGG | - | tig0022441:31364-31383 | Msa1400340:CDS | 30.0% |
| ! | ATATCTTTTTACTGATGCAG+AGG | - | tig0022441:31441-31460 | Msa1400340:intron | 30.0% |
| ! | TCTCCTAAATTTTGTTGACA+AGG | - | tig0022441:31466-31485 | Msa1400340:intron | 30.0% |
| TGACATGGACATCATATATT+TGG | - | tig0022441:31583-31602 | Msa1400340:intron | 30.0% | |
| ATTTCAGTCATAACTTCATG+AGG | + | tig0022441:31620-31639 | None:intergenic | 30.0% | |
| ! | GTTACTGAATCTTCTTTTAG+AGG | - | tig0022441:31763-31782 | Msa1400340:intron | 30.0% |
| TTGTGCATATTGTGATTCTA+AGG | - | tig0022441:31829-31848 | Msa1400340:intron | 30.0% | |
| TTGGTTGCACTATTGAAAAA+CGG | - | tig0022441:31956-31975 | Msa1400340:intron | 30.0% | |
| !! | ACCTCTAGAATCAATTCTAA+AGG | + | tig0022441:32262-32281 | None:intergenic | 30.0% |
| !! | GTCACTTGCTATTATACTTT+AGG | - | tig0022441:32434-32453 | Msa1400340:CDS | 30.0% |
| !!! | AAATATTTTGGTGAGGTTCT+TGG | + | tig0022441:32465-32484 | None:intergenic | 30.0% |
| ! | AGTTTTCTTGTTCTAACAGA+AGG | + | tig0022441:32687-32706 | None:intergenic | 30.0% |
| CAAGGGATTGTAATCTTAAT+TGG | + | tig0022441:32710-32729 | None:intergenic | 30.0% | |
| TTACAATCCCTTGTAAAAAC+AGG | - | tig0022441:32717-32736 | Msa1400340:five_prime_UTR | 30.0% | |
| !!! | GATCATACCTGTTTTTACAA+GGG | + | tig0022441:32727-32746 | None:intergenic | 30.0% |
| !!! | TGATCATACCTGTTTTTACA+AGG | + | tig0022441:32728-32747 | None:intergenic | 30.0% |
| ACTGTACACAATTTAATTGG+AGG | + | tig0022441:32834-32853 | None:intergenic | 30.0% | |
| AAATTGTGTACAGTTGAGAA+TGG | - | tig0022441:32840-32859 | Msa1400340:intron | 30.0% | |
| AGTTACAACACTACATCAAA+AGG | + | tig0022441:33168-33187 | None:intergenic | 30.0% | |
| AAAGCAACATAGCATCTTAT+TGG | + | tig0022441:33218-33237 | None:intergenic | 30.0% | |
| AATTGTTTGACATGGTTTCT+AGG | + | tig0022441:33328-33347 | None:intergenic | 30.0% | |
| GCAACTAAAATTGTTTGACA+TGG | + | tig0022441:33336-33355 | None:intergenic | 30.0% | |
| GAAAGTGAGACAATGAACTA+AGG | + | tig0022441:29570-29589 | None:intergenic | 35.0% | |
| TCACTTTCTCTTTCCTTTCT+TGG | - | tig0022441:29582-29601 | Msa1400340:three_prime_UTR | 35.0% | |
| TTTGCACCAAGAATGCTTAA+GGG | + | tig0022441:29640-29659 | None:intergenic | 35.0% | |
| ! | TTTTGCACCAAGAATGCTTA+AGG | + | tig0022441:29641-29660 | None:intergenic | 35.0% |
| ! | CTTTGATTTACTTGAGGTCA+TGG | - | tig0022441:30180-30199 | Msa1400340:CDS | 35.0% |
| CATCACTCAATAACTTCTCA+AGG | + | tig0022441:30363-30382 | None:intergenic | 35.0% | |
| CTTGTTGAAGAAATTCCTGT+TGG | - | tig0022441:30412-30431 | Msa1400340:intron | 35.0% | |
| ATACATCGATGAATACCAAC+AGG | + | tig0022441:30430-30449 | None:intergenic | 35.0% | |
| TGAAGAAGTTAAGGATGGAA+AGG | - | tig0022441:30501-30520 | Msa1400340:intron | 35.0% | |
| GAAGAAGTTAAGGATGGAAA+GGG | - | tig0022441:30502-30521 | Msa1400340:intron | 35.0% | |
| ! | CCAAAGCAAAATTGATAGCA+GGG | + | tig0022441:30687-30706 | None:intergenic | 35.0% |
| ! | TCCAAAGCAAAATTGATAGC+AGG | + | tig0022441:30688-30707 | None:intergenic | 35.0% |
| !!! | AGAGCTTGCTTTAGTTTTTC+AGG | - | tig0022441:30741-30760 | Msa1400340:CDS | 35.0% |
| TTACGGTCCATTTCACAATA+TGG | + | tig0022441:30870-30889 | None:intergenic | 35.0% | |
| ATTCACTTGGAACATAGATG+AGG | + | tig0022441:31174-31193 | None:intergenic | 35.0% | |
| GGTAGACAAACATGCTTATT+AGG | + | tig0022441:31218-31237 | None:intergenic | 35.0% | |
| CTTGATAAATACACCAACAC+AGG | + | tig0022441:31312-31331 | None:intergenic | 35.0% | |
| TCCTTTGTGCTATATGGAAT+AGG | - | tig0022441:31370-31389 | Msa1400340:CDS | 35.0% | |
| ! | GAGCCTTGTCAACAAAATTT+AGG | + | tig0022441:31472-31491 | None:intergenic | 35.0% |
| TGATGTGCAGCCATTAAAAT+TGG | + | tig0022441:31512-31531 | None:intergenic | 35.0% | |
| GTTCAAGAAGTTCTTACTCT+TGG | - | tig0022441:31854-31873 | Msa1400340:intron | 35.0% | |
| AGAAGTTCTTACTCTTGGAT+TGG | - | tig0022441:31859-31878 | Msa1400340:intron | 35.0% | |
| TTTCAATAGTGCAACCAAGA+TGG | + | tig0022441:31954-31973 | None:intergenic | 35.0% | |
| TTATCATGAAAAAACGGTGC+AGG | - | tig0022441:32054-32073 | Msa1400340:intron | 35.0% | |
| TATCATGAAAAAACGGTGCA+GGG | - | tig0022441:32055-32074 | Msa1400340:intron | 35.0% | |
| AAGTTCTATGTCAGTGAACA+TGG | - | tig0022441:32135-32154 | Msa1400340:intron | 35.0% | |
| TGATGATTTACACATGAGAC+TGG | - | tig0022441:32180-32199 | Msa1400340:CDS | 35.0% | |
| CTGGATTACCTTGAAAATAG+AGG | - | tig0022441:32199-32218 | Msa1400340:CDS | 35.0% | |
| ! | GACAAGTACCTCTATTTTCA+AGG | + | tig0022441:32210-32229 | None:intergenic | 35.0% |
| !! | GCCTTTAGAATTGATTCTAG+AGG | - | tig0022441:32258-32277 | Msa1400340:CDS | 35.0% |
| !! | TTCTCTAGGACAAAAACATC+CGG | + | tig0022441:32924-32943 | None:intergenic | 35.0% |
| !! | GATGTTTTTGTCCTAGAGAA+GGG | - | tig0022441:32924-32943 | Msa1400340:intron | 35.0% |
| GTTCATGGAACTTAAAGATG+AGG | - | tig0022441:32980-32999 | Msa1400340:intron | 35.0% | |
| TGCATTGTCTTCTACATCAT+CGG | - | tig0022441:33058-33077 | Msa1400340:intron | 35.0% | |
| AAAGTCTTAACCACAAAGTG+AGG | - | tig0022441:33093-33112 | Msa1400340:five_prime_UTR | 35.0% | |
| ! | TTCATTTTCTCCTCACTTTG+TGG | + | tig0022441:33106-33125 | None:intergenic | 35.0% |
| GCAACTACTCTTGAACAAAA+TGG | + | tig0022441:33131-33150 | None:intergenic | 35.0% | |
| GACTCAGTTACCAACATCAT+TGG | - | tig0022441:29510-29529 | Msa1400340:three_prime_UTR | 40.0% | |
| GATTGTTTGGCCAATGATGT+TGG | + | tig0022441:29523-29542 | None:intergenic | 40.0% | |
| TCTCTTTCCTTTCTTGGTCA+TGG | - | tig0022441:29588-29607 | Msa1400340:three_prime_UTR | 40.0% | |
| AAAGAAGCCATGACCAAGAA+AGG | + | tig0022441:29598-29617 | None:intergenic | 40.0% | |
| TTTCTTGGTCATGGCTTCTT+TGG | - | tig0022441:29597-29616 | Msa1400340:three_prime_UTR | 40.0% | |
| TCATGGCTTCTTTGGTTGAA+TGG | - | tig0022441:29605-29624 | Msa1400340:three_prime_UTR | 40.0% | |
| TAGAACCCCTTAAGCATTCT+TGG | - | tig0022441:29631-29650 | Msa1400340:three_prime_UTR | 40.0% | |
| TTGCACCAAGAATGCTTAAG+GGG | + | tig0022441:29639-29658 | None:intergenic | 40.0% | |
| !!! | CACAAGCTTGCTATTTTGAG+TGG | - | tig0022441:29753-29772 | Msa1400340:three_prime_UTR | 40.0% |
| GGTCATCAAATGGACCAAAA+TGG | - | tig0022441:29910-29929 | Msa1400340:CDS | 40.0% | |
| GCTTGAAGTACAAGTGATTG+TGG | - | tig0022441:29986-30005 | Msa1400340:CDS | 40.0% | |
| ! | CATTGAGTTGTGTCCTTAGA+GGG | - | tig0022441:30090-30109 | Msa1400340:intron | 40.0% |
| ! | ATTGAGTTGTGTCCTTAGAG+GGG | - | tig0022441:30091-30110 | Msa1400340:intron | 40.0% |
| ATCAGATTCATACCCCTCTA+AGG | + | tig0022441:30106-30125 | None:intergenic | 40.0% | |
| ! | CACATGTTCATTGTTGGTTG+AGG | + | tig0022441:30293-30312 | None:intergenic | 40.0% |
| CTCAACCAACAATGAACATG+TGG | - | tig0022441:30291-30310 | Msa1400340:CDS | 40.0% | |
| CATTGCCACATGTTCATTGT+TGG | + | tig0022441:30299-30318 | None:intergenic | 40.0% | |
| CAACAATGAACATGTGGCAA+TGG | - | tig0022441:30297-30316 | Msa1400340:CDS | 40.0% | |
| GTGAGTTTGAATAAGCTCAG+TGG | - | tig0022441:30334-30353 | Msa1400340:intron | 40.0% | |
| !! | ATGAAAGATTTGGTGCCTTG+TGG | - | tig0022441:30541-30560 | Msa1400340:intron | 40.0% |
| TCATATCCAACACTACCACA+AGG | + | tig0022441:30559-30578 | None:intergenic | 40.0% | |
| ! | TCAACACATGTTGTCACTTC+TGG | + | tig0022441:30637-30656 | None:intergenic | 40.0% |
| ! | CCCTGCTATCAATTTTGCTT+TGG | - | tig0022441:30684-30703 | Msa1400340:CDS | 40.0% |
| GCACAAGAAAATGACGCTTA+AGG | + | tig0022441:30783-30802 | None:intergenic | 40.0% | |
| AGAGCAAATCTGACAAGTTC+AGG | - | tig0022441:30842-30861 | Msa1400340:CDS | 40.0% | |
| GAGCAAATCTGACAAGTTCA+GGG | - | tig0022441:30843-30862 | Msa1400340:CDS | 40.0% | |
| TCAGGGTCCATATTGTGAAA+TGG | - | tig0022441:30860-30879 | Msa1400340:CDS | 40.0% | |
| AGAATTCAGCCAAAATGCCT+AGG | + | tig0022441:30951-30970 | None:intergenic | 40.0% | |
| CCAACACAGGAAAACAGATT+TGG | + | tig0022441:31299-31318 | None:intergenic | 40.0% | |
| ! | CCAAATCTGTTTTCCTGTGT+TGG | - | tig0022441:31296-31315 | Msa1400340:CDS | 40.0% |
| GCCTATTCCATATAGCACAA+AGG | + | tig0022441:31374-31393 | None:intergenic | 40.0% | |
| TTGTGCTATATGGAATAGGC+CGG | - | tig0022441:31374-31393 | Msa1400340:CDS | 40.0% | |
| ATTGCATTCAGAGAGTCGTA+AGG | - | tig0022441:31558-31577 | Msa1400340:intron | 40.0% | |
| !! | ATTGCATCTGGTGTTGATTC+CGG | + | tig0022441:31668-31687 | None:intergenic | 40.0% |
| CTCTTATCATTCACAGTCAC+AGG | + | tig0022441:31701-31720 | None:intergenic | 40.0% | |
| !! | CTGTGAATGATAAGAGTGTC+AGG | - | tig0022441:31705-31724 | Msa1400340:intron | 40.0% |
| GAGTGTCAGGAAAATCCTTA+AGG | - | tig0022441:31718-31737 | Msa1400340:intron | 40.0% | |
| CAGGAAAATCCTTAAGGCAT+TGG | - | tig0022441:31724-31743 | Msa1400340:intron | 40.0% | |
| ACAAGCATAGTGTAGTGCAT+AGG | + | tig0022441:31813-31832 | None:intergenic | 40.0% | |
| ATTCTCCTTAAGAATCCTCG+TGG | - | tig0022441:31887-31906 | Msa1400340:intron | 40.0% | |
| TGTATCCACGAGGATTCTTA+AGG | + | tig0022441:31895-31914 | None:intergenic | 40.0% | |
| TAAGAATCCTCGTGGATACA+CGG | - | tig0022441:31895-31914 | Msa1400340:intron | 40.0% | |
| AATAGTGCAACCAAGATGGA+TGG | + | tig0022441:31950-31969 | None:intergenic | 40.0% | |
| CAATTTGTCAGAGATTGACG+AGG | - | tig0022441:32023-32042 | Msa1400340:intron | 40.0% | |
| ATCATGAAAAAACGGTGCAG+GGG | - | tig0022441:32056-32075 | Msa1400340:intron | 40.0% | |
| ATGTTGCAGTTGCATTTGCT+AGG | - | tig0022441:32541-32560 | Msa1400340:CDS | 40.0% | |
| ! | TGCAAGTTCAACAGCTTTGA+AGG | - | tig0022441:32629-32648 | Msa1400340:CDS | 40.0% |
| !! | GCAAGTTCAACAGCTTTGAA+GGG | - | tig0022441:32630-32649 | Msa1400340:CDS | 40.0% |
| TGTGTACAGTTGAGAATGGT+AGG | - | tig0022441:32844-32863 | Msa1400340:intron | 40.0% | |
| GTATCTAGACGATGATATGC+CGG | - | tig0022441:32902-32921 | Msa1400340:intron | 40.0% | |
| !! | GGATGTTTTTGTCCTAGAGA+AGG | - | tig0022441:32923-32942 | Msa1400340:intron | 40.0% |
| ! | TTTTGTCCTAGAGAAGGGAA+CGG | - | tig0022441:32929-32948 | Msa1400340:intron | 40.0% |
| ACTTAAAGATGAGGTGCAGA+AGG | - | tig0022441:32989-33008 | Msa1400340:intron | 40.0% | |
| !! | GAAGGCATTTCACAAGGATA+TGG | - | tig0022441:33007-33026 | Msa1400340:intron | 40.0% |
| ATGGCTGAAAATAACCAAGC+AGG | - | tig0022441:33026-33045 | Msa1400340:intron | 40.0% | |
| ATGCAGATGAAAAACCTGCT+TGG | + | tig0022441:33043-33062 | None:intergenic | 40.0% | |
| ! | GCATTGAGTTGTGTCCTTAG+AGG | - | tig0022441:30089-30108 | Msa1400340:intron | 45.0% |
| ! | ACACATGTTGTCACTTCTGG+TGG | + | tig0022441:30634-30653 | None:intergenic | 45.0% |
| ! | AGTCGGATACCTAGGCATTT+TGG | - | tig0022441:30939-30958 | Msa1400340:CDS | 45.0% |
| GAATGCAATGAGAGAGAAGC+TGG | + | tig0022441:31547-31566 | None:intergenic | 45.0% | |
| GGAATCAACACCAGATGCAA+TGG | - | tig0022441:31667-31686 | Msa1400340:intron | 45.0% | |
| AACACCAGATGCAATGGAAG+TGG | - | tig0022441:31673-31692 | Msa1400340:intron | 45.0% | |
| ACGAAAGGATCCATCCATCT+TGG | - | tig0022441:31937-31956 | Msa1400340:intron | 45.0% | |
| GCATCAGAAACCACTCTTGA+TGG | - | tig0022441:31986-32005 | Msa1400340:intron | 45.0% | |
| AGCAGTTTGTCCATCAAGAG+TGG | + | tig0022441:31999-32018 | None:intergenic | 45.0% | |
| ! | CTTTTTCCCGCATTGTTCTG+AGG | - | tig0022441:32869-32888 | Msa1400340:intron | 45.0% |
| TCAAGCACCTCAGAACAATG+CGG | + | tig0022441:32879-32898 | None:intergenic | 45.0% | |
| AGCAGAGAACGAAGAAAGCA+CGG | - | tig0022441:32958-32977 | Msa1400340:intron | 45.0% | |
| ! | AACGAAGAAAGCACGGTTCA+TGG | - | tig0022441:32965-32984 | Msa1400340:intron | 45.0% |
| TACATCATCGGCAAGTCGTA+GGG | - | tig0022441:33070-33089 | Msa1400340:intron | 45.0% | |
| AGGATGGAAAGGGAAAGCCA+AGG | - | tig0022441:30512-30531 | Msa1400340:intron | 50.0% | |
| ! | TTGGTGCCTTGTGGTAGTGT+TGG | - | tig0022441:30550-30569 | Msa1400340:intron | 50.0% |
| ! | CATGTTGTCACTTCTGGTGG+TGG | + | tig0022441:30631-30650 | None:intergenic | 50.0% |
| ATGCATGAGATGGTGACTGC+AGG | - | tig0022441:31269-31288 | Msa1400340:CDS | 50.0% | |
| GAGAGTCGTAAGGTCTGACA+TGG | - | tig0022441:31568-31587 | Msa1400340:intron | 50.0% | |
| ATTCCGGCAGAGATTGGACT+CGG | + | tig0022441:31652-31671 | None:intergenic | 50.0% | |
| !! | GTGTTGATTCCGGCAGAGAT+TGG | + | tig0022441:31658-31677 | None:intergenic | 50.0% |
| GGTTCCACTTCCATTGCATC+TGG | + | tig0022441:31680-31699 | None:intergenic | 50.0% | |
| CGTCAGAGTCCAATGCCTTA+AGG | + | tig0022441:31736-31755 | None:intergenic | 50.0% | |
| TGAAGAACCGTGTATCCACG+AGG | + | tig0022441:31905-31924 | None:intergenic | 50.0% | |
| GGATGGATCCTTTCGTCTTG+CGG | + | tig0022441:31933-31952 | None:intergenic | 50.0% | |
| TCAGAGATTGACGAGGCGAA+AGG | - | tig0022441:32030-32049 | Msa1400340:intron | 50.0% | |
| TGAAAAAACGGTGCAGGGGA+AGG | - | tig0022441:32060-32079 | Msa1400340:intron | 50.0% | |
| GGAAGGAGTCTCACAAGGAT+AGG | - | tig0022441:32077-32096 | Msa1400340:intron | 50.0% | |
| TAGGCTGTTCTTTCCTGCTG+AGG | - | tig0022441:32560-32579 | Msa1400340:CDS | 50.0% | |
| TGTTCTTTCCTGCTGAGGCA+AGG | - | tig0022441:32565-32584 | Msa1400340:CDS | 50.0% | |
| GTTCTTTCCTGCTGAGGCAA+GGG | - | tig0022441:32566-32585 | Msa1400340:CDS | 50.0% | |
| AGGGTAGCCATAGAGAATGC+TGG | - | tig0022441:32585-32604 | Msa1400340:CDS | 50.0% | |
| GGGTAGCCATAGAGAATGCT+GGG | - | tig0022441:32586-32605 | Msa1400340:CDS | 50.0% | |
| GGTAGCCATAGAGAATGCTG+GGG | - | tig0022441:32587-32606 | Msa1400340:CDS | 50.0% | |
| ATCTGCCCCAGCATTCTCTA+TGG | + | tig0022441:32595-32614 | None:intergenic | 50.0% | |
| GCTGTTGAACTTGCATAGCG+TGG | + | tig0022441:32624-32643 | None:intergenic | 50.0% | |
| CAAGCACCTCAGAACAATGC+GGG | + | tig0022441:32878-32897 | None:intergenic | 50.0% | |
| CTTCTTCCGTTCCCTTCTCT+AGG | + | tig0022441:32938-32957 | None:intergenic | 50.0% | |
| !! | GGTGCAGAAGGCATTTCACA+AGG | - | tig0022441:33001-33020 | Msa1400340:intron | 50.0% |
| CTACATCATCGGCAAGTCGT+AGG | - | tig0022441:33069-33088 | Msa1400340:intron | 50.0% | |
| CTAGGTATCCGACTGCAGAG+CGG | + | tig0022441:30933-30952 | None:intergenic | 55.0% | |
| GACGGCGTGAATGCATGAGA+TGG | - | tig0022441:31259-31278 | Msa1400340:CDS | 55.0% | |
| TCACGTTGCCGCAAGACGAA+AGG | - | tig0022441:31922-31941 | Msa1400340:intron | 55.0% | |
| TACTGCAGCCGCTCTGCAGT+CGG | - | tig0022441:30922-30941 | Msa1400340:CDS | 60.0% | |
| CGCTCTGCAGTCGGATACCT+AGG | - | tig0022441:30931-30950 | Msa1400340:CDS | 60.0% | |
| CGGCAGAGATTGGACTCGGA+GGG | + | tig0022441:31648-31667 | None:intergenic | 60.0% | |
| CCTCCGAGTCCAATCTCTGC+CGG | - | tig0022441:31646-31665 | Msa1400340:intron | 60.0% | |
| GCAGGGGAAGGAGTCTCACA+AGG | - | tig0022441:32072-32091 | Msa1400340:intron | 60.0% | |
| ATGGCTACCCTTGCCTCAGC+AGG | + | tig0022441:32576-32595 | None:intergenic | 60.0% | |
| CCGGCAGAGATTGGACTCGG+AGG | + | tig0022441:31649-31668 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022441 | gene | 29506 | 33393 | 29506 | ID=Msa1400340;Name=Msa1400340 |
| tig0022441 | mRNA | 29506 | 33393 | 29506 | ID=Msa1400340-mRNA-1;Parent=Msa1400340;Name=Msa1400340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=357|1|1|1|0.75|0.6|5|269|594 |
| tig0022441 | exon | 29506 | 30046 | 29506 | ID=Msa1400340-mRNA-1:exon:17710;Parent=Msa1400340-mRNA-1 |
| tig0022441 | exon | 30161 | 30349 | 30161 | ID=Msa1400340-mRNA-1:exon:17709;Parent=Msa1400340-mRNA-1 |
| tig0022441 | exon | 30679 | 31438 | 30679 | ID=Msa1400340-mRNA-1:exon:17708;Parent=Msa1400340-mRNA-1 |
| tig0022441 | exon | 32137 | 32753 | 32137 | ID=Msa1400340-mRNA-1:exon:17707;Parent=Msa1400340-mRNA-1 |
| tig0022441 | exon | 33090 | 33393 | 33090 | ID=Msa1400340-mRNA-1:exon:17706;Parent=Msa1400340-mRNA-1 |
| tig0022441 | five_prime_UTR | 33090 | 33393 | 33090 | ID=Msa1400340-mRNA-1:five_prime_utr;Parent=Msa1400340-mRNA-1 |
| tig0022441 | five_prime_UTR | 32701 | 32753 | 32701 | ID=Msa1400340-mRNA-1:five_prime_utr;Parent=Msa1400340-mRNA-1 |
| tig0022441 | CDS | 32137 | 32700 | 32137 | ID=Msa1400340-mRNA-1:cds;Parent=Msa1400340-mRNA-1 |
| tig0022441 | CDS | 30679 | 31438 | 30679 | ID=Msa1400340-mRNA-1:cds;Parent=Msa1400340-mRNA-1 |
| tig0022441 | CDS | 30161 | 30349 | 30161 | ID=Msa1400340-mRNA-1:cds;Parent=Msa1400340-mRNA-1 |
| tig0022441 | CDS | 29775 | 30046 | 29775 | ID=Msa1400340-mRNA-1:cds;Parent=Msa1400340-mRNA-1 |
| tig0022441 | three_prime_UTR | 29506 | 29774 | 29506 | ID=Msa1400340-mRNA-1:three_prime_utr;Parent=Msa1400340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
