Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277410 | XP_003594245.1 | 91.400 | 407 | 30 | 2 | 1 | 407 | 1 | 402 | 0.0 | 728 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277410 | sp|Q9FGK4|B561J_ARATH | 53.315 | 362 | 156 | 5 | 32 | 389 | 25 | 377 | 3.65e-141 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277410 | G7IP86 | 91.400 | 407 | 30 | 2 | 1 | 407 | 1 | 402 | 0.0 | 728 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0277410 | 0.842850 | 2.010220e-58 | -8.615850e-47 |
| Msa0013280 | Msa0277410 | 0.827445 | 1.558118e-54 | -8.615850e-47 |
| Msa0015180 | Msa0277410 | 0.800292 | 1.543267e-48 | -8.615850e-47 |
| Msa0062180 | Msa0277410 | 0.805504 | 1.293085e-49 | -8.615850e-47 |
| Msa0064140 | Msa0277410 | 0.807010 | 6.229615e-50 | -8.615850e-47 |
| Msa0071480 | Msa0277410 | 0.805743 | 1.152183e-49 | -8.615850e-47 |
| Msa0081620 | Msa0277410 | 0.813716 | 2.223086e-51 | -8.615850e-47 |
| Msa0092410 | Msa0277410 | 0.856756 | 2.594776e-62 | -8.615850e-47 |
| Msa0106530 | Msa0277410 | 0.850451 | 1.684046e-60 | -8.615850e-47 |
| Msa0119440 | Msa0277410 | 0.805243 | 1.466836e-49 | -8.615850e-47 |
| Msa0136630 | Msa0277410 | 0.803391 | 3.565861e-49 | -8.615850e-47 |
| Msa0162690 | Msa0277410 | 0.802234 | 6.180544e-49 | -8.615850e-47 |
| Msa0173960 | Msa0277410 | 0.803688 | 3.093038e-49 | -8.615850e-47 |
| Msa0187310 | Msa0277410 | 0.801318 | 9.527862e-49 | -8.615850e-47 |
| Msa0187830 | Msa0277410 | 0.850679 | 1.453075e-60 | -8.615850e-47 |
| Msa0189610 | Msa0277410 | 0.801943 | 7.093398e-49 | -8.615850e-47 |
| Msa0194010 | Msa0277410 | 0.800239 | 1.582283e-48 | -8.615850e-47 |
| Msa0201570 | Msa0277410 | 0.835130 | 2.006755e-56 | -8.615850e-47 |
| Msa0227340 | Msa0277410 | 0.808059 | 3.730576e-50 | -8.615850e-47 |
| Msa0235880 | Msa0277410 | 0.808515 | 2.982537e-50 | -8.615850e-47 |
| Msa0240270 | Msa0277410 | 0.847702 | 9.785863e-60 | -8.615850e-47 |
| Msa0264830 | Msa0277410 | 0.822380 | 2.443373e-53 | -8.615850e-47 |
| Msa0269560 | Msa0277410 | 0.849201 | 3.763245e-60 | -8.615850e-47 |
| Msa0271550 | Msa0277410 | 0.841598 | 4.311910e-58 | -8.615850e-47 |
| Msa0277410 | Msa0282720 | 0.831240 | 1.866899e-55 | -8.615850e-47 |
| Msa0277410 | Msa0284450 | 0.808063 | 3.723673e-50 | -8.615850e-47 |
| Msa0277410 | Msa0302870 | 0.813836 | 2.091927e-51 | -8.615850e-47 |
| Msa0277410 | Msa0319290 | 0.816280 | 5.997403e-52 | -8.615850e-47 |
| Msa0277410 | Msa0340340 | 0.815723 | 7.989541e-52 | -8.615850e-47 |
| Msa0277410 | Msa0364790 | 0.826963 | 2.032991e-54 | -8.615850e-47 |
| Msa0277410 | Msa0377840 | 0.836088 | 1.148667e-56 | -8.615850e-47 |
| Msa0277410 | Msa0380600 | 0.800429 | 1.447059e-48 | -8.615850e-47 |
| Msa0277410 | Msa0386010 | 0.808643 | 2.800194e-50 | -8.615850e-47 |
| Msa0277410 | Msa0408340 | 0.840583 | 7.965443e-58 | -8.615850e-47 |
| Msa0277410 | Msa0426560 | 0.842666 | 2.249719e-58 | -8.615850e-47 |
| Msa0277410 | Msa0466010 | 0.839665 | 1.383380e-57 | -8.615850e-47 |
| Msa0277410 | Msa0473140 | 0.809144 | 2.188026e-50 | -8.615850e-47 |
| Msa0277410 | Msa0490380 | 0.811843 | 5.714701e-51 | -8.615850e-47 |
| Msa0277410 | Msa0501410 | 0.834775 | 2.465938e-56 | -8.615850e-47 |
| Msa0277410 | Msa0511620 | 0.822759 | 1.994558e-53 | -8.615850e-47 |
| Msa0277410 | Msa0512980 | 0.800361 | 1.494227e-48 | -8.615850e-47 |
| Msa0277410 | Msa0517610 | 0.845100 | 5.011746e-59 | -8.615850e-47 |
| Msa0277410 | Msa0524330 | 0.843453 | 1.388087e-58 | -8.615850e-47 |
| Msa0277410 | Msa0524440 | 0.846526 | 2.054684e-59 | -8.615850e-47 |
| Msa0277410 | Msa0574600 | 0.832908 | 7.226184e-56 | -8.615850e-47 |
| Msa0277410 | Msa0580920 | 0.821665 | 3.578896e-53 | -8.615850e-47 |
| Msa0277410 | Msa0613150 | 0.800623 | 1.321516e-48 | -8.615850e-47 |
| Msa0277410 | Msa0613340 | 0.843703 | 1.190584e-58 | -8.615850e-47 |
| Msa0277410 | Msa0614350 | 0.806241 | 9.049436e-50 | -8.615850e-47 |
| Msa0277410 | Msa0638990 | 0.823519 | 1.326276e-53 | -8.615850e-47 |
| Msa0277410 | Msa0653440 | 0.816613 | 5.052803e-52 | -8.615850e-47 |
| Msa0277410 | Msa0653880 | 0.820645 | 6.149670e-53 | -8.615850e-47 |
| Msa0277410 | Msa0695870 | 0.805557 | 1.260189e-49 | -8.615850e-47 |
| Msa0277410 | Msa0697570 | 0.840072 | 1.083852e-57 | -8.615850e-47 |
| Msa0277410 | Msa0708310 | 0.861052 | 1.344834e-63 | -8.615850e-47 |
| Msa0277410 | Msa0714990 | 0.826569 | 2.524554e-54 | -8.615850e-47 |
| Msa0277410 | Msa0750810 | 0.800311 | 1.529936e-48 | -8.615850e-47 |
| Msa0277410 | Msa0757020 | 0.819129 | 1.365463e-52 | -8.615850e-47 |
| Msa0277410 | Msa0785120 | 0.811180 | 7.965492e-51 | -8.615850e-47 |
| Msa0277410 | Msa0798010 | 0.816639 | 4.984313e-52 | -8.615850e-47 |
| Msa0277410 | Msa0812950 | 0.818917 | 1.525727e-52 | -8.615850e-47 |
| Msa0277410 | Msa0823540 | 0.801229 | 9.936764e-49 | -8.615850e-47 |
| Msa0277410 | Msa0828240 | 0.814302 | 1.651133e-51 | -8.615850e-47 |
| Msa0277410 | Msa0832290 | 0.803670 | 3.121086e-49 | -8.615850e-47 |
| Msa0277410 | Msa0836650 | 0.815894 | 7.316909e-52 | -8.615850e-47 |
| Msa0277410 | Msa0836870 | 0.803722 | 3.043116e-49 | -8.615850e-47 |
| Msa0277410 | Msa0863720 | 0.800674 | 1.290078e-48 | -8.615850e-47 |
| Msa0277410 | Msa0865970 | 0.826621 | 2.453961e-54 | -8.615850e-47 |
| Msa0277410 | Msa0866070 | 0.823736 | 1.179328e-53 | -8.615850e-47 |
| Msa0277410 | Msa0870060 | 0.802171 | 6.365946e-49 | -8.615850e-47 |
| Msa0277410 | Msa0898320 | 0.815070 | 1.116011e-51 | -8.615850e-47 |
| Msa0277410 | Msa0902830 | 0.821240 | 4.484824e-53 | -8.615850e-47 |
| Msa0277410 | Msa0919530 | 0.827223 | 1.761847e-54 | -8.615850e-47 |
| Msa0277410 | Msa0935770 | 0.836124 | 1.124246e-56 | -8.615850e-47 |
| Msa0277410 | Msa0972810 | 0.830182 | 3.391626e-55 | -8.615850e-47 |
| Msa0277410 | Msa0982780 | 0.827822 | 1.265074e-54 | -8.615850e-47 |
| Msa0277410 | Msa0992640 | 0.808295 | 3.323000e-50 | -8.615850e-47 |
| Msa0277410 | Msa0992680 | 0.809645 | 1.707798e-50 | -8.615850e-47 |
| Msa0277410 | Msa1034700 | 0.830258 | 3.249865e-55 | -8.615850e-47 |
| Msa0277410 | Msa1043120 | 0.853474 | 2.333615e-61 | -8.615850e-47 |
| Msa0277410 | Msa1162060 | 0.824213 | 9.119228e-54 | -8.615850e-47 |
| Msa0277410 | Msa1200710 | 0.805889 | 1.073556e-49 | -8.615850e-47 |
| Msa0277410 | Msa1214170 | 0.843132 | 1.690795e-58 | -8.615850e-47 |
| Msa0277410 | Msa1219900 | 0.804241 | 2.373850e-49 | -8.615850e-47 |
| Msa0277410 | Msa1225100 | 0.802638 | 5.100804e-49 | -8.615850e-47 |
| Msa0277410 | Msa1246700 | 0.815464 | 9.120053e-52 | -8.615850e-47 |
| Msa0277410 | Msa1253660 | 0.824091 | 9.739457e-54 | -8.615850e-47 |
| Msa0277410 | Msa1260680 | 0.812458 | 4.196972e-51 | -8.615850e-47 |
| Msa0277410 | Msa1266490 | 0.803040 | 4.214520e-49 | -8.615850e-47 |
| Msa0277410 | Msa1285200 | 0.822950 | 1.800514e-53 | -8.615850e-47 |
| Msa0277410 | Msa1329870 | 0.802104 | 6.571110e-49 | -8.615850e-47 |
| Msa0277410 | Msa1353890 | 0.869339 | 3.334860e-66 | -8.615850e-47 |
| Msa0277410 | Msa1360020 | 0.840033 | 1.109567e-57 | -8.615850e-47 |
| Msa0277410 | Msa1365610 | 0.818864 | 1.569304e-52 | -8.615850e-47 |
| Msa0277410 | Msa1367530 | 0.846156 | 2.592551e-59 | -8.615850e-47 |
| Msa0277410 | Msa1372660 | 0.811278 | 7.583115e-51 | -8.615850e-47 |
| Msa0277410 | Msa1376450 | 0.809862 | 1.534200e-50 | -8.615850e-47 |
| Msa0277410 | Msa1379580 | 0.953194 | 4.691238e-111 | -8.615850e-47 |
| Msa0277410 | Msa1405820 | 0.824482 | 7.882406e-54 | -8.615850e-47 |
| Msa0277410 | Msa1408050 | 0.814152 | 1.781899e-51 | -8.615850e-47 |
| Msa0277410 | Msa1408180 | 0.839740 | 1.322144e-57 | -8.615850e-47 |
| Msa0277410 | Msa1409490 | 0.803451 | 3.464982e-49 | -8.615850e-47 |
| Msa0277410 | Msa1424630 | 0.906094 | 2.141999e-80 | -8.615850e-47 |
| Msa0277410 | Msa1428070 | 0.802494 | 5.463166e-49 | -8.615850e-47 |
| Msa0277410 | Msa1430130 | 0.800428 | 1.447943e-48 | -8.615850e-47 |
| Msa0277410 | Msa1430550 | 0.863634 | 2.164870e-64 | -8.615850e-47 |
| Msa0277410 | Msa1448980 | 0.838939 | 2.134420e-57 | -8.615850e-47 |
| Msa0277410 | Msa1460750 | 0.800011 | 1.760282e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277410 | MtrunA17_Chr2g0290131 | 91.400 | 407 | 30 | 2 | 1 | 407 | 1 | 402 | 0.0 | 728 |
| Msa0277410 | MtrunA17_Chr4g0076051 | 67.347 | 392 | 125 | 3 | 14 | 402 | 4 | 395 | 0.0 | 535 |
| Msa0277410 | MtrunA17_Chr2g0278181 | 69.608 | 306 | 91 | 2 | 99 | 402 | 1 | 306 | 3.46e-148 | 422 |
| Msa0277410 | MtrunA17_Chr7g0234191 | 41.687 | 403 | 215 | 10 | 5 | 402 | 49 | 436 | 1.86e-102 | 311 |
| Msa0277410 | MtrunA17_Chr3g0101961 | 39.782 | 367 | 205 | 8 | 29 | 389 | 21 | 377 | 7.15e-85 | 263 |
| Msa0277410 | MtrunA17_Chr5g0447771 | 33.509 | 379 | 227 | 8 | 40 | 401 | 64 | 434 | 1.21e-65 | 216 |
| Msa0277410 | MtrunA17_Chr5g0444651 | 35.550 | 391 | 222 | 15 | 10 | 383 | 12 | 389 | 1.26e-65 | 215 |
| Msa0277410 | MtrunA17_Chr8g0347591 | 38.049 | 205 | 117 | 4 | 175 | 379 | 183 | 377 | 1.35e-37 | 140 |
| Msa0277410 | MtrunA17_Chr7g0275621 | 27.577 | 388 | 237 | 13 | 19 | 391 | 26 | 384 | 3.84e-25 | 106 |
| Msa0277410 | MtrunA17_Chr8g0338731 | 28.421 | 190 | 129 | 4 | 8 | 197 | 7 | 189 | 2.57e-17 | 80.9 |
| Msa0277410 | MtrunA17_Chr7g0261921 | 39.806 | 103 | 61 | 1 | 99 | 200 | 1 | 103 | 2.24e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277410 | AT5G47530.1 | 53.315 | 362 | 156 | 5 | 32 | 389 | 25 | 377 | 3.71e-142 | 410 |
| Msa0277410 | AT4G17280.1 | 50.378 | 397 | 182 | 7 | 9 | 400 | 10 | 396 | 8.38e-131 | 382 |
| Msa0277410 | AT5G35735.1 | 48.130 | 401 | 183 | 8 | 16 | 402 | 9 | 398 | 9.31e-119 | 351 |
| Msa0277410 | AT3G25290.1 | 43.223 | 391 | 196 | 12 | 19 | 395 | 13 | 391 | 8.50e-105 | 315 |
| Msa0277410 | AT3G25290.2 | 43.223 | 391 | 196 | 12 | 19 | 395 | 13 | 391 | 8.50e-105 | 315 |
| Msa0277410 | AT4G12980.1 | 42.338 | 385 | 201 | 7 | 18 | 390 | 13 | 388 | 2.06e-96 | 294 |
| Msa0277410 | AT3G59070.1 | 42.033 | 364 | 191 | 9 | 19 | 375 | 22 | 372 | 4.95e-83 | 262 |
| Msa0277410 | AT2G04850.1 | 34.828 | 379 | 218 | 10 | 40 | 399 | 29 | 397 | 2.51e-64 | 211 |
| Msa0277410 | AT5G48750.1 | 38.911 | 257 | 141 | 7 | 3 | 255 | 10 | 254 | 3.08e-54 | 181 |
| Msa0277410 | AT3G07570.1 | 37.278 | 169 | 98 | 2 | 212 | 380 | 207 | 367 | 5.44e-30 | 119 |
| Msa0277410 | AT3G61750.2 | 36.025 | 161 | 93 | 4 | 218 | 377 | 143 | 294 | 1.45e-24 | 103 |
| Msa0277410 | AT3G61750.1 | 35.625 | 160 | 95 | 3 | 218 | 377 | 220 | 371 | 2.56e-24 | 103 |
| Msa0277410 | AT3G07390.1 | 29.891 | 184 | 122 | 5 | 23 | 203 | 39 | 218 | 3.48e-17 | 81.6 |
| Msa0277410 | AT3G07390.2 | 44.737 | 76 | 39 | 1 | 32 | 107 | 48 | 120 | 2.05e-13 | 68.2 |
| Msa0277410 | AT4G18260.1 | 28.481 | 158 | 93 | 3 | 199 | 346 | 45 | 192 | 1.63e-11 | 65.1 |
| Msa0277410 | AT2G30890.1 | 26.471 | 170 | 115 | 3 | 216 | 380 | 54 | 218 | 2.84e-11 | 63.9 |
Find 125 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGATATAGATACTGGATTT+TGG | 0.220701 | 2_3:-9943673 | Msa0277410:three_prime_UTR |
| AGCATCATCAACATCTTTAA+AGG | 0.222620 | 2_3:-9943908 | Msa0277410:CDS |
| ATGCAACAAAATATACAAAA+AGG | 0.232567 | 2_3:+9943618 | None:intergenic |
| TATAGAGAGTTGGTGGGTTT+GGG | 0.254962 | 2_3:+9946074 | None:intergenic |
| TTATAGAGAGTTGGTGGGTT+TGG | 0.257611 | 2_3:+9946073 | None:intergenic |
| CTACTACTTTGGTTCATCTT+TGG | 0.263788 | 2_3:-9945431 | Msa0277410:CDS |
| GCCTATATAGTTGGTGTTGC+TGG | 0.268677 | 2_3:-9944559 | Msa0277410:CDS |
| TACTCAATCTAAGGAGAGTT+TGG | 0.289007 | 2_3:-9945352 | Msa0277410:CDS |
| CAGCAGATCGCTACGATAAC+TGG | 0.293780 | 2_3:-9943862 | Msa0277410:CDS |
| ATTGATGAAGTATAAGCTTT+AGG | 0.319882 | 2_3:+9945573 | None:intergenic |
| CTTCTGCCTTGGAACCCTTC+AGG | 0.326027 | 2_3:-9944458 | Msa0277410:intron |
| GGAACAAATGGTAATGGATA+TGG | 0.345134 | 2_3:-9943719 | Msa0277410:CDS |
| CAAAGCTTGTGCTCCATTCA+TGG | 0.345197 | 2_3:+9945623 | None:intergenic |
| CTTTAAAGGGTTTGATGCCT+TGG | 0.361855 | 2_3:-9943894 | Msa0277410:CDS |
| TCCTGTTGGAACTACTACTT+TGG | 0.373099 | 2_3:-9945442 | Msa0277410:CDS |
| CATGAATGGAGCACAAGCTT+TGG | 0.373312 | 2_3:-9945622 | Msa0277410:CDS |
| GAGAGTTTGGATCTTCGTTC+TGG | 0.374390 | 2_3:-9945339 | Msa0277410:CDS |
| GATTGGAGAGAGAGGAGAAA+GGG | 0.376280 | 2_3:+9946046 | None:intergenic |
| AAGTGAAGAGGTTGTGAGAT+TGG | 0.376717 | 2_3:+9946029 | None:intergenic |
| ATGGTAATGGATATGGTTCT+AGG | 0.376964 | 2_3:-9943712 | Msa0277410:CDS |
| GGGTGGCGTTGCTGTACTTT+TGG | 0.394743 | 2_3:-9943807 | Msa0277410:CDS |
| CTACTGGAACCTTTACCATT+GGG | 0.394836 | 2_3:-9943957 | Msa0277410:CDS |
| TAGTGCTAATACTCAATCTA+AGG | 0.401924 | 2_3:-9945361 | Msa0277410:CDS |
| TCAACATGGCTGTGAACTTA+AGG | 0.405285 | 2_3:-9945920 | Msa0277410:exon |
| CACTGGCATTATTGCAGCAT+TGG | 0.406523 | 2_3:-9943828 | Msa0277410:CDS |
| TGGCAAGATGGTGCTATGTC+TGG | 0.406620 | 2_3:-9945411 | Msa0277410:CDS |
| GCTTATACTTCATCAATTGC+CGG | 0.410077 | 2_3:-9945567 | Msa0277410:CDS |
| GCATCATCAACATCTTTAAA+GGG | 0.412669 | 2_3:-9943907 | Msa0277410:CDS |
| CGTTCTGGTGCTTCTGAACA+AGG | 0.418467 | 2_3:-9945324 | Msa0277410:CDS |
| CATAGTGAAATCCTGGAGTA+TGG | 0.420412 | 2_3:-9943543 | Msa0277410:three_prime_UTR |
| ATGATTATGTTGTGTTACTT+TGG | 0.426426 | 2_3:+9945960 | None:intergenic |
| TTGGTTCATCTTTGGCAAGA+TGG | 0.435669 | 2_3:-9945423 | Msa0277410:CDS |
| TAAAGGGTTTGATGCCTTGG+AGG | 0.436696 | 2_3:-9943891 | Msa0277410:CDS |
| TGGGGAGTCTTGATGCCGTT+GGG | 0.440117 | 2_3:-9944664 | Msa0277410:CDS |
| TTCATAGCATAGTGAAATCC+TGG | 0.444279 | 2_3:-9943550 | Msa0277410:three_prime_UTR |
| ACTGAGATAGATATAGATAC+TGG | 0.445998 | 2_3:-9943680 | Msa0277410:three_prime_UTR |
| TCAAGTCTGCAGACCCTGCT+TGG | 0.447998 | 2_3:-9944612 | Msa0277410:CDS |
| GAGTGTTTGTAGTATACTCT+TGG | 0.448168 | 2_3:-9943595 | Msa0277410:three_prime_UTR |
| AACAAGTTGCAAGGAATGAA+TGG | 0.449100 | 2_3:-9943740 | Msa0277410:CDS |
| AGATTGGAGAGAGAGGAGAA+AGG | 0.454276 | 2_3:+9946045 | None:intergenic |
| TGGATATGGTTCTAGGGTGT+AGG | 0.460818 | 2_3:-9943705 | Msa0277410:exon |
| CAAGGAATGAATGGAACAAA+TGG | 0.462291 | 2_3:-9943731 | Msa0277410:CDS |
| TCCAGCAACACCAACTATAT+AGG | 0.465181 | 2_3:+9944558 | None:intergenic |
| GGTGTTGCTGGATGGGGTAC+CGG | 0.465931 | 2_3:-9944547 | Msa0277410:CDS |
| ATGAATGGAACAAATGGTAA+TGG | 0.468323 | 2_3:-9943725 | Msa0277410:CDS |
| ACTGGCATTATTGCAGCATT+GGG | 0.469702 | 2_3:-9943827 | Msa0277410:CDS |
| AGAGAGTTGGTGGGTTTGGG+TGG | 0.470809 | 2_3:+9946077 | None:intergenic |
| GGGTTATTATAGAGAGTTGG+TGG | 0.476197 | 2_3:+9946067 | None:intergenic |
| AAGGGGTTATTATAGAGAGT+TGG | 0.476615 | 2_3:+9946064 | None:intergenic |
| TATAGTTGGTGTTGCTGGAT+GGG | 0.478511 | 2_3:-9944554 | Msa0277410:CDS |
| CTCTCTGCTAATTGTGTCGC+TGG | 0.479571 | 2_3:+9945543 | None:intergenic |
| CAATCAGCTGCCTATATAGT+TGG | 0.479959 | 2_3:-9944568 | Msa0277410:CDS |
| TCTACTGGAACCTTTACCAT+TGG | 0.481797 | 2_3:-9943958 | Msa0277410:CDS |
| GAGTGCTAAATGCAATAAGC+TGG | 0.482103 | 2_3:-9944684 | Msa0277410:CDS |
| TTGTGTTGTTGTTTGTGCTA+AGG | 0.482521 | 2_3:+9945848 | None:intergenic |
| GGTGCTTCTGAACAAGGATC+AGG | 0.484364 | 2_3:-9945318 | Msa0277410:CDS |
| TATATAGGCAGCTGATTGGC+AGG | 0.484585 | 2_3:+9944573 | None:intergenic |
| GGTTGTGAGATTGGAGAGAG+AGG | 0.485045 | 2_3:+9946038 | None:intergenic |
| ATTGGAGAGAGAGGAGAAAG+GGG | 0.485174 | 2_3:+9946047 | None:intergenic |
| GGGATCATCATCTTCTGCCT+TGG | 0.486081 | 2_3:-9944469 | Msa0277410:CDS |
| GAAGATGTGAGATCCTTGTC+TGG | 0.487322 | 2_3:+9945645 | None:intergenic |
| CAACTATATAGGCAGCTGAT+TGG | 0.489184 | 2_3:+9944569 | None:intergenic |
| TGCTAATTGTGTCGCTGGAC+CGG | 0.489743 | 2_3:+9945548 | None:intergenic |
| ATCACAAAATCAGATTCTAC+TGG | 0.492868 | 2_3:-9943973 | Msa0277410:CDS |
| GATCTCACATCTTCCATGAA+TGG | 0.494534 | 2_3:-9945636 | Msa0277410:CDS |
| AACCTTTACCATTGGGGTGT+CGG | 0.496844 | 2_3:-9943950 | Msa0277410:CDS |
| ACCAAAGTAGTAGTTCCAAC+AGG | 0.497576 | 2_3:+9945441 | None:intergenic |
| ATATAGTTGGTGTTGCTGGA+TGG | 0.498343 | 2_3:-9944555 | Msa0277410:CDS |
| CTGGGGAGTCTTGATGCCGT+TGG | 0.502768 | 2_3:-9944665 | Msa0277410:CDS |
| GGATATGGTTCTAGGGTGTA+GGG | 0.503228 | 2_3:-9943704 | Msa0277410:exon |
| ATCCGACACCCCAATGGTAA+AGG | 0.503836 | 2_3:+9943948 | None:intergenic |
| AAGCTCGGCAGTGACTCGGC+TGG | 0.510712 | 2_3:-9944520 | Msa0277410:CDS |
| GCAAGTATTACTCTTCCTGT+TGG | 0.510786 | 2_3:-9945456 | Msa0277410:CDS |
| TTAGGAGTTCCACTAGATTG+TGG | 0.518776 | 2_3:+9945591 | None:intergenic |
| ACACAAACCGATGGGTAGCA+TGG | 0.519624 | 2_3:-9945677 | Msa0277410:CDS |
| AACTCACCTCGTATCTCCAC+TGG | 0.522653 | 2_3:-9945758 | Msa0277410:CDS |
| TTATTGCATTTAGCACTCCA+TGG | 0.523173 | 2_3:+9944689 | None:intergenic |
| GTTGCAATTCCACAATCTAG+TGG | 0.528492 | 2_3:-9945600 | Msa0277410:CDS |
| ATAGTTGGTGTTGCTGGATG+GGG | 0.535576 | 2_3:-9944553 | Msa0277410:CDS |
| GGCATTATTGCAGCATTGGG+TGG | 0.536995 | 2_3:-9943824 | Msa0277410:CDS |
| TGGTAATGGATATGGTTCTA+GGG | 0.540128 | 2_3:-9943711 | Msa0277410:CDS |
| TGGGGTACCGGTCTCAAGCT+CGG | 0.540218 | 2_3:-9944535 | Msa0277410:CDS |
| TATTGCATTTAGCACTCCAT+GGG | 0.546826 | 2_3:+9944690 | None:intergenic |
| CTCATACCTGAAGGGTTCCA+AGG | 0.549493 | 2_3:+9944452 | None:intergenic |
| AAATGATACAAAGTATCCAC+TGG | 0.549921 | 2_3:+9943501 | None:intergenic |
| ACATGAAGGTAAAACCAAGC+AGG | 0.551666 | 2_3:+9944598 | None:intergenic |
| AACTGGAAGCATGCGTACAC+TGG | 0.553041 | 2_3:-9943845 | Msa0277410:CDS |
| TCTCAAGCTCGGCAGTGACT+CGG | 0.553336 | 2_3:-9944524 | Msa0277410:CDS |
| TGTGATTGCAAGGTACTTGA+AGG | 0.556632 | 2_3:-9944638 | Msa0277410:CDS |
| TACTGGAACCTTTACCATTG+GGG | 0.558856 | 2_3:-9943956 | Msa0277410:CDS |
| GTCACTGCCGAGCTTGAGAC+CGG | 0.567277 | 2_3:+9944528 | None:intergenic |
| GGTTATTATAGAGAGTTGGT+GGG | 0.567435 | 2_3:+9946068 | None:intergenic |
| AGTGCTAAATGCAATAAGCT+GGG | 0.569932 | 2_3:-9944683 | Msa0277410:CDS |
| CACAAACCGATGGGTAGCAT+GGG | 0.570671 | 2_3:-9945676 | Msa0277410:CDS |
| CATGGATCATTGTGATCAAG+AGG | 0.572443 | 2_3:-9943775 | Msa0277410:CDS |
| TCGCCATGCTATTATTCCAG+TGG | 0.577374 | 2_3:-9943517 | Msa0277410:three_prime_UTR |
| TATTCAACTCATAGAACACT+CGG | 0.580467 | 2_3:-9944490 | Msa0277410:CDS |
| CATGGCGAAAACCATACTCC+AGG | 0.580782 | 2_3:+9943532 | None:intergenic |
| GTAGCACTCAATCTTGAATG+AGG | 0.591825 | 2_3:+9945507 | None:intergenic |
| TGCTACACATGAAAATAATG+AGG | 0.596383 | 2_3:-9945490 | Msa0277410:CDS |
| TCTGAACAAGGATCAGGCGG+TGG | 0.598620 | 2_3:-9945312 | Msa0277410:CDS |
| TGAGAGGATTGAAAGTGAAG+AGG | 0.598633 | 2_3:+9946017 | None:intergenic |
| GTATAACAAACACAAACCGA+TGG | 0.599459 | 2_3:-9945686 | Msa0277410:CDS |
| TGGAGATACGAGGTGAGTTG+TGG | 0.602619 | 2_3:+9945762 | None:intergenic |
| AAATCAGAGAACAAGTTGCA+AGG | 0.608640 | 2_3:-9943749 | Msa0277410:CDS |
| CGTTGGGAGCTGTGATTGCA+AGG | 0.616544 | 2_3:-9944648 | Msa0277410:CDS |
| TTGCGTATCCGACACCCCAA+TGG | 0.617721 | 2_3:+9943942 | None:intergenic |
| TAATAGCCCATGCTACCCAT+CGG | 0.617929 | 2_3:+9945670 | None:intergenic |
| ATCTGCTGCAGACACCTCCA+AGG | 0.621895 | 2_3:+9943877 | None:intergenic |
| GACATAGCATTCAGACACTC+AGG | 0.622339 | 2_3:-9945708 | Msa0277410:CDS |
| TATCCACTGGAATAATAGCA+TGG | 0.624226 | 2_3:+9943514 | None:intergenic |
| CTGATTGGCAGGTAACATGA+AGG | 0.627406 | 2_3:+9944584 | None:intergenic |
| CATGTAATCTCATACCTGAA+GGG | 0.631087 | 2_3:+9944444 | None:intergenic |
| TATAACAAACACAAACCGAT+GGG | 0.637410 | 2_3:-9945685 | Msa0277410:CDS |
| CATGAAGGTAAAACCAAGCA+GGG | 0.639212 | 2_3:+9944599 | None:intergenic |
| CTAGTCATATCATGTGCTTG+AGG | 0.649595 | 2_3:+9945381 | None:intergenic |
| GTGCTAAATGCAATAAGCTG+GGG | 0.662810 | 2_3:-9944682 | Msa0277410:CDS |
| CTTGCAATCACAGCTCCCAA+CGG | 0.668115 | 2_3:+9944649 | None:intergenic |
| ATTCAACTCATAGAACACTC+GGG | 0.675546 | 2_3:-9944489 | Msa0277410:CDS |
| GCTTCTGAACAAGGATCAGG+CGG | 0.676930 | 2_3:-9945315 | Msa0277410:CDS |
| TGGACATACGATCAAAACAC+AGG | 0.688340 | 2_3:-9945738 | Msa0277410:CDS |
| ATGTTGTTATGATTGAGATG+AGG | 0.696927 | 2_3:+9945889 | None:intergenic |
| AAGATGTGAGATCCTTGTCT+GGG | 0.704804 | 2_3:+9945646 | None:intergenic |
| ATGGGCTATTAACCCAGACA+AGG | 0.714059 | 2_3:-9945658 | Msa0277410:CDS |
| GTATGTCCAGTGGAGATACG+AGG | 0.728963 | 2_3:+9945752 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAACTACTAATAAAAT+TGG | + | chr2_3:9944430-9944449 | None:intergenic | 10.0% |
| !!! | ATAATCAAAGTTTTAAATTG+CGG | - | chr2_3:9944360-9944379 | Msa0277410:intron | 15.0% |
| !!! | AAATTGATTTTAGTTAAAGA+TGG | - | chr2_3:9944569-9944588 | Msa0277410:CDS | 15.0% |
| !!! | AATTGATTTTAGTTAAAGAT+GGG | - | chr2_3:9944570-9944589 | Msa0277410:CDS | 15.0% |
| !!! | AATATTTTTAATTGCATATG+TGG | - | chr2_3:9945093-9945112 | Msa0277410:intron | 15.0% |
| !!! | TTTGTTTTTGTTTTTGTGTT+GGG | + | chr2_3:9943506-9943525 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTTGTTTTTGTGT+TGG | + | chr2_3:9943507-9943526 | None:intergenic | 20.0% |
| !!! | TAGTTTTTTTAGTGTTGATT+TGG | - | chr2_3:9944440-9944459 | Msa0277410:intron | 20.0% |
| !!! | TTGGATTTTATTTGGTAATT+TGG | - | chr2_3:9944742-9944761 | Msa0277410:intron | 20.0% |
| !! | CTATAAACTACTAATATACA+AGG | - | chr2_3:9945215-9945234 | Msa0277410:intron | 20.0% |
| !!! | TTATGAGTTTTATTGAGTTT+TGG | - | chr2_3:9945839-9945858 | Msa0277410:CDS | 20.0% |
| !! | TGCAACAAAATATACAAAAA+GGG | + | chr2_3:9945872-9945891 | None:intergenic | 20.0% |
| !! | ATGCAACAAAATATACAAAA+AGG | + | chr2_3:9945873-9945892 | None:intergenic | 20.0% |
| !!! | ATGATTATGTTGTGTTACTT+TGG | + | chr2_3:9943531-9943550 | None:intergenic | 25.0% |
| ! | ATTGATGAAGTATAAGCTTT+AGG | + | chr2_3:9943918-9943937 | None:intergenic | 25.0% |
| ! | ATTATATCACCTTCAATCAA+AGG | - | chr2_3:9944290-9944309 | Msa0277410:intron | 25.0% |
| ! | TTATATCACCTTCAATCAAA+GGG | - | chr2_3:9944291-9944310 | Msa0277410:intron | 25.0% |
| !!! | TGAACTTTTTTCTGTCAAAT+TGG | - | chr2_3:9944504-9944523 | Msa0277410:CDS | 25.0% |
| !! | AAATTGGTGAATTGTTGTTA+AGG | - | chr2_3:9944520-9944539 | Msa0277410:CDS | 25.0% |
| !! | AAGAAGGTTTGGATTTTATT+TGG | - | chr2_3:9944734-9944753 | Msa0277410:intron | 25.0% |
| ! | GGTAATTTGGAAATTGATTA+AGG | - | chr2_3:9944755-9944774 | Msa0277410:intron | 25.0% |
| !!! | ATATACAAGGTTTTGAATTG+TGG | - | chr2_3:9945228-9945247 | Msa0277410:intron | 25.0% |
| !! | TAGATATAGATACTGGATTT+TGG | - | chr2_3:9945815-9945834 | Msa0277410:CDS | 25.0% |
| TTCCATCAAAAACATCAACA+TGG | - | chr2_3:9943554-9943573 | Msa0277410:three_prime_UTR | 30.0% | |
| ATGTTGTTATGATTGAGATG+AGG | + | chr2_3:9943602-9943621 | None:intergenic | 30.0% | |
| TATAACAAACACAAACCGAT+GGG | - | chr2_3:9943803-9943822 | Msa0277410:CDS | 30.0% | |
| TGCTACACATGAAAATAATG+AGG | - | chr2_3:9943998-9944017 | Msa0277410:CDS | 30.0% | |
| TAGTGCTAATACTCAATCTA+AGG | - | chr2_3:9944127-9944146 | Msa0277410:intron | 30.0% | |
| !!! | TAATTTTTTGTTCAGACCCA+TGG | - | chr2_3:9944782-9944801 | Msa0277410:intron | 30.0% |
| TATTCAACTCATAGAACACT+CGG | - | chr2_3:9944998-9945017 | Msa0277410:intron | 30.0% | |
| TAAAAAAAGCAATGATGCTG+CGG | - | chr2_3:9945338-9945357 | Msa0277410:CDS | 30.0% | |
| ! | AAACTTTTCCTACTGAATAC+AGG | - | chr2_3:9945462-9945481 | Msa0277410:CDS | 30.0% |
| ! | CTGATTTTGTGATCTTTGTT+TGG | + | chr2_3:9945508-9945527 | None:intergenic | 30.0% |
| ATCACAAAATCAGATTCTAC+TGG | - | chr2_3:9945515-9945534 | Msa0277410:CDS | 30.0% | |
| AGCATCATCAACATCTTTAA+AGG | - | chr2_3:9945580-9945599 | Msa0277410:CDS | 30.0% | |
| GCATCATCAACATCTTTAAA+GGG | - | chr2_3:9945581-9945600 | Msa0277410:CDS | 30.0% | |
| ATGAATGGAACAAATGGTAA+TGG | - | chr2_3:9945763-9945782 | Msa0277410:CDS | 30.0% | |
| ACTGAGATAGATATAGATAC+TGG | - | chr2_3:9945808-9945827 | Msa0277410:CDS | 30.0% | |
| ! | AAATGATACAAAGTATCCAC+TGG | + | chr2_3:9945990-9946009 | None:intergenic | 30.0% |
| ! | GGTTATTATAGAGAGTTGGT+GGG | + | chr2_3:9943423-9943442 | None:intergenic | 35.0% |
| AAGGGGTTATTATAGAGAGT+TGG | + | chr2_3:9943427-9943446 | None:intergenic | 35.0% | |
| !!! | TGTTGGGTTTTTTTGATGAG+AGG | + | chr2_3:9943490-9943509 | None:intergenic | 35.0% |
| !! | AGCCATGTTGATGTTTTTGA+TGG | + | chr2_3:9943559-9943578 | None:intergenic | 35.0% |
| !! | TTGTGTTGTTGTTTGTGCTA+AGG | + | chr2_3:9943643-9943662 | None:intergenic | 35.0% |
| GTATAACAAACACAAACCGA+TGG | - | chr2_3:9943802-9943821 | Msa0277410:CDS | 35.0% | |
| GCTTATACTTCATCAATTGC+CGG | - | chr2_3:9943921-9943940 | Msa0277410:CDS | 35.0% | |
| ! | CTACTACTTTGGTTCATCTT+TGG | - | chr2_3:9944057-9944076 | Msa0277410:intron | 35.0% |
| TACTCAATCTAAGGAGAGTT+TGG | - | chr2_3:9944136-9944155 | Msa0277410:intron | 35.0% | |
| ACTATAGACCCTTTGATTGA+AGG | + | chr2_3:9944302-9944321 | None:intergenic | 35.0% | |
| TCGTTAATATCACGGAGAAT+TGG | - | chr2_3:9944399-9944418 | Msa0277410:intron | 35.0% | |
| TTAGATGTTACGCAACAAGA+AGG | - | chr2_3:9944718-9944737 | Msa0277410:intron | 35.0% | |
| TATTGCATTTAGCACTCCAT+GGG | + | chr2_3:9944801-9944820 | None:intergenic | 35.0% | |
| TTATTGCATTTAGCACTCCA+TGG | + | chr2_3:9944802-9944821 | None:intergenic | 35.0% | |
| AGTGCTAAATGCAATAAGCT+GGG | - | chr2_3:9944805-9944824 | Msa0277410:intron | 35.0% | |
| ATTCAACTCATAGAACACTC+GGG | - | chr2_3:9944999-9945018 | Msa0277410:intron | 35.0% | |
| CATGTAATCTCATACCTGAA+GGG | + | chr2_3:9945047-9945066 | None:intergenic | 35.0% | |
| ACATGTAATCTCATACCTGA+AGG | + | chr2_3:9945048-9945067 | None:intergenic | 35.0% | |
| AGCAAAAACCTGTATTCAGT+AGG | + | chr2_3:9945473-9945492 | None:intergenic | 35.0% | |
| !! | TACTTTTGGAAGCTTACACA+TGG | - | chr2_3:9945695-9945714 | Msa0277410:CDS | 35.0% |
| AAATCAGAGAACAAGTTGCA+AGG | - | chr2_3:9945739-9945758 | Msa0277410:CDS | 35.0% | |
| AACAAGTTGCAAGGAATGAA+TGG | - | chr2_3:9945748-9945767 | Msa0277410:CDS | 35.0% | |
| CAAGGAATGAATGGAACAAA+TGG | - | chr2_3:9945757-9945776 | Msa0277410:CDS | 35.0% | |
| !! | GGAACAAATGGTAATGGATA+TGG | - | chr2_3:9945769-9945788 | Msa0277410:CDS | 35.0% |
| !! | ATGGTAATGGATATGGTTCT+AGG | - | chr2_3:9945776-9945795 | Msa0277410:CDS | 35.0% |
| !! | TGGTAATGGATATGGTTCTA+GGG | - | chr2_3:9945777-9945796 | Msa0277410:CDS | 35.0% |
| GAGTGTTTGTAGTATACTCT+TGG | - | chr2_3:9945893-9945912 | Msa0277410:CDS | 35.0% | |
| TTCATAGCATAGTGAAATCC+TGG | - | chr2_3:9945938-9945957 | Msa0277410:five_prime_UTR | 35.0% | |
| TATCCACTGGAATAATAGCA+TGG | + | chr2_3:9945977-9945996 | None:intergenic | 35.0% | |
| !! | TATAGAGAGTTGGTGGGTTT+GGG | + | chr2_3:9943417-9943436 | None:intergenic | 40.0% |
| !! | TTATAGAGAGTTGGTGGGTT+TGG | + | chr2_3:9943418-9943437 | None:intergenic | 40.0% |
| GGGTTATTATAGAGAGTTGG+TGG | + | chr2_3:9943424-9943443 | None:intergenic | 40.0% | |
| AAGTGAAGAGGTTGTGAGAT+TGG | + | chr2_3:9943462-9943481 | None:intergenic | 40.0% | |
| TGAGAGGATTGAAAGTGAAG+AGG | + | chr2_3:9943474-9943493 | None:intergenic | 40.0% | |
| TCAACATGGCTGTGAACTTA+AGG | - | chr2_3:9943568-9943587 | Msa0277410:three_prime_UTR | 40.0% | |
| !!! | TGTTTTGATCGTATGTCCAG+TGG | + | chr2_3:9943749-9943768 | None:intergenic | 40.0% |
| TGGACATACGATCAAAACAC+AGG | - | chr2_3:9943750-9943769 | Msa0277410:CDS | 40.0% | |
| AAGATGTGAGATCCTTGTCT+GGG | + | chr2_3:9943845-9943864 | None:intergenic | 40.0% | |
| GATCTCACATCTTCCATGAA+TGG | - | chr2_3:9943852-9943871 | Msa0277410:CDS | 40.0% | |
| GTTGCAATTCCACAATCTAG+TGG | - | chr2_3:9943888-9943907 | Msa0277410:CDS | 40.0% | |
| TTAGGAGTTCCACTAGATTG+TGG | + | chr2_3:9943900-9943919 | None:intergenic | 40.0% | |
| GTAGCACTCAATCTTGAATG+AGG | + | chr2_3:9943984-9944003 | None:intergenic | 40.0% | |
| GCAAGTATTACTCTTCCTGT+TGG | - | chr2_3:9944032-9944051 | Msa0277410:intron | 40.0% | |
| TCCTGTTGGAACTACTACTT+TGG | - | chr2_3:9944046-9944065 | Msa0277410:intron | 40.0% | |
| ACCAAAGTAGTAGTTCCAAC+AGG | + | chr2_3:9944050-9944069 | None:intergenic | 40.0% | |
| TTGGTTCATCTTTGGCAAGA+TGG | - | chr2_3:9944065-9944084 | Msa0277410:intron | 40.0% | |
| CTAGTCATATCATGTGCTTG+AGG | + | chr2_3:9944110-9944129 | None:intergenic | 40.0% | |
| GCGATGGATCGTTAATATCA+CGG | - | chr2_3:9944391-9944410 | Msa0277410:intron | 40.0% | |
| TGTTACGCAACAAGAAGGTT+TGG | - | chr2_3:9944723-9944742 | Msa0277410:intron | 40.0% | |
| GAGTGCTAAATGCAATAAGC+TGG | - | chr2_3:9944804-9944823 | Msa0277410:intron | 40.0% | |
| GTGCTAAATGCAATAAGCTG+GGG | - | chr2_3:9944806-9944825 | Msa0277410:intron | 40.0% | |
| ! | TGTGATTGCAAGGTACTTGA+AGG | - | chr2_3:9944850-9944869 | Msa0277410:intron | 40.0% |
| CATGAAGGTAAAACCAAGCA+GGG | + | chr2_3:9944892-9944911 | None:intergenic | 40.0% | |
| ACATGAAGGTAAAACCAAGC+AGG | + | chr2_3:9944893-9944912 | None:intergenic | 40.0% | |
| CAACTATATAGGCAGCTGAT+TGG | + | chr2_3:9944922-9944941 | None:intergenic | 40.0% | |
| CAATCAGCTGCCTATATAGT+TGG | - | chr2_3:9944920-9944939 | Msa0277410:intron | 40.0% | |
| TCCAGCAACACCAACTATAT+AGG | + | chr2_3:9944933-9944952 | None:intergenic | 40.0% | |
| !! | ATATAGTTGGTGTTGCTGGA+TGG | - | chr2_3:9944933-9944952 | Msa0277410:intron | 40.0% |
| !! | TATAGTTGGTGTTGCTGGAT+GGG | - | chr2_3:9944934-9944953 | Msa0277410:intron | 40.0% |
| !!! | AAGGTTTTGAATTGTGGCTG+TGG | - | chr2_3:9945234-9945253 | Msa0277410:intron | 40.0% |
| TCAAAAGACGCATATCAGCA+AGG | + | chr2_3:9945395-9945414 | None:intergenic | 40.0% | |
| ! | AGGTTTTTGCTCTGCTATTG+AGG | - | chr2_3:9945482-9945501 | Msa0277410:CDS | 40.0% |
| TCTACTGGAACCTTTACCAT+TGG | - | chr2_3:9945530-9945549 | Msa0277410:CDS | 40.0% | |
| CTACTGGAACCTTTACCATT+GGG | - | chr2_3:9945531-9945550 | Msa0277410:CDS | 40.0% | |
| TACTGGAACCTTTACCATTG+GGG | - | chr2_3:9945532-9945551 | Msa0277410:CDS | 40.0% | |
| ! | CTTTAAAGGGTTTGATGCCT+TGG | - | chr2_3:9945594-9945613 | Msa0277410:CDS | 40.0% |
| ACTGGCATTATTGCAGCATT+GGG | - | chr2_3:9945661-9945680 | Msa0277410:CDS | 40.0% | |
| CATGGATCATTGTGATCAAG+AGG | - | chr2_3:9945713-9945732 | Msa0277410:CDS | 40.0% | |
| CATAGTGAAATCCTGGAGTA+TGG | - | chr2_3:9945945-9945964 | Msa0277410:five_prime_UTR | 40.0% | |
| ATTGGAGAGAGAGGAGAAAG+GGG | + | chr2_3:9943444-9943463 | None:intergenic | 45.0% | |
| GATTGGAGAGAGAGGAGAAA+GGG | + | chr2_3:9943445-9943464 | None:intergenic | 45.0% | |
| AGATTGGAGAGAGAGGAGAA+AGG | + | chr2_3:9943446-9943465 | None:intergenic | 45.0% | |
| GACATAGCATTCAGACACTC+AGG | - | chr2_3:9943780-9943799 | Msa0277410:CDS | 45.0% | |
| TAATAGCCCATGCTACCCAT+CGG | + | chr2_3:9943821-9943840 | None:intergenic | 45.0% | |
| ! | ATGGGCTATTAACCCAGACA+AGG | - | chr2_3:9943830-9943849 | Msa0277410:CDS | 45.0% |
| GAAGATGTGAGATCCTTGTC+TGG | + | chr2_3:9943846-9943865 | None:intergenic | 45.0% | |
| CAAAGCTTGTGCTCCATTCA+TGG | + | chr2_3:9943868-9943887 | None:intergenic | 45.0% | |
| CATGAATGGAGCACAAGCTT+TGG | - | chr2_3:9943866-9943885 | Msa0277410:CDS | 45.0% | |
| GAGAGTTTGGATCTTCGTTC+TGG | - | chr2_3:9944149-9944168 | Msa0277410:intron | 45.0% | |
| CTGATTGGCAGGTAACATGA+AGG | + | chr2_3:9944907-9944926 | None:intergenic | 45.0% | |
| TATATAGGCAGCTGATTGGC+AGG | + | chr2_3:9944918-9944937 | None:intergenic | 45.0% | |
| !! | GCCTATATAGTTGGTGTTGC+TGG | - | chr2_3:9944929-9944948 | Msa0277410:intron | 45.0% |
| !! | ATAGTTGGTGTTGCTGGATG+GGG | - | chr2_3:9944935-9944954 | Msa0277410:intron | 45.0% |
| AACCTTTACCATTGGGGTGT+CGG | - | chr2_3:9945538-9945557 | Msa0277410:CDS | 45.0% | |
| TAAAGGGTTTGATGCCTTGG+AGG | - | chr2_3:9945597-9945616 | Msa0277410:CDS | 45.0% | |
| CACTGGCATTATTGCAGCAT+TGG | - | chr2_3:9945660-9945679 | Msa0277410:CDS | 45.0% | |
| !! | TGGATATGGTTCTAGGGTGT+AGG | - | chr2_3:9945783-9945802 | Msa0277410:CDS | 45.0% |
| !! | GGATATGGTTCTAGGGTGTA+GGG | - | chr2_3:9945784-9945803 | Msa0277410:CDS | 45.0% |
| TCGCCATGCTATTATTCCAG+TGG | - | chr2_3:9945971-9945990 | Msa0277410:five_prime_UTR | 45.0% | |
| GGTTGTGAGATTGGAGAGAG+AGG | + | chr2_3:9943453-9943472 | None:intergenic | 50.0% | |
| TGGAGATACGAGGTGAGTTG+TGG | + | chr2_3:9943729-9943748 | None:intergenic | 50.0% | |
| AACTCACCTCGTATCTCCAC+TGG | - | chr2_3:9943730-9943749 | Msa0277410:CDS | 50.0% | |
| GTATGTCCAGTGGAGATACG+AGG | + | chr2_3:9943739-9943758 | None:intergenic | 50.0% | |
| ACACAAACCGATGGGTAGCA+TGG | - | chr2_3:9943811-9943830 | Msa0277410:CDS | 50.0% | |
| CACAAACCGATGGGTAGCAT+GGG | - | chr2_3:9943812-9943831 | Msa0277410:CDS | 50.0% | |
| ! | TGCTAATTGTGTCGCTGGAC+CGG | + | chr2_3:9943943-9943962 | None:intergenic | 50.0% |
| CTCTCTGCTAATTGTGTCGC+TGG | + | chr2_3:9943948-9943967 | None:intergenic | 50.0% | |
| !! | TGGCAAGATGGTGCTATGTC+TGG | - | chr2_3:9944077-9944096 | Msa0277410:intron | 50.0% |
| CGTTCTGGTGCTTCTGAACA+AGG | - | chr2_3:9944164-9944183 | Msa0277410:intron | 50.0% | |
| GGTGCTTCTGAACAAGGATC+AGG | - | chr2_3:9944170-9944189 | Msa0277410:intron | 50.0% | |
| GCTTCTGAACAAGGATCAGG+CGG | - | chr2_3:9944173-9944192 | Msa0277410:intron | 50.0% | |
| AATTGCGGCTATGATCGCGA+TGG | - | chr2_3:9944375-9944394 | Msa0277410:intron | 50.0% | |
| CTTGCAATCACAGCTCCCAA+CGG | + | chr2_3:9944842-9944861 | None:intergenic | 50.0% | |
| GGGATCATCATCTTCTGCCT+TGG | - | chr2_3:9945019-9945038 | Msa0277410:intron | 50.0% | |
| CTCATACCTGAAGGGTTCCA+AGG | + | chr2_3:9945039-9945058 | None:intergenic | 50.0% | |
| ATGATGCTGCGGTCAGATTG+TGG | - | chr2_3:9945349-9945368 | Msa0277410:CDS | 50.0% | |
| ATCCGACACCCCAATGGTAA+AGG | + | chr2_3:9945543-9945562 | None:intergenic | 50.0% | |
| CAGCAGATCGCTACGATAAC+TGG | - | chr2_3:9945626-9945645 | Msa0277410:CDS | 50.0% | |
| ! | AACTGGAAGCATGCGTACAC+TGG | - | chr2_3:9945643-9945662 | Msa0277410:CDS | 50.0% |
| ! | GGCATTATTGCAGCATTGGG+TGG | - | chr2_3:9945664-9945683 | Msa0277410:CDS | 50.0% |
| CATGGCGAAAACCATACTCC+AGG | + | chr2_3:9945959-9945978 | None:intergenic | 50.0% | |
| TCTGAACAAGGATCAGGCGG+TGG | - | chr2_3:9944176-9944195 | Msa0277410:intron | 55.0% | |
| TGGGGAGTCTTGATGCCGTT+GGG | - | chr2_3:9944824-9944843 | Msa0277410:intron | 55.0% | |
| CGTTGGGAGCTGTGATTGCA+AGG | - | chr2_3:9944840-9944859 | Msa0277410:intron | 55.0% | |
| TCAAGTCTGCAGACCCTGCT+TGG | - | chr2_3:9944876-9944895 | Msa0277410:intron | 55.0% | |
| TCTCAAGCTCGGCAGTGACT+CGG | - | chr2_3:9944964-9944983 | Msa0277410:intron | 55.0% | |
| CTTCTGCCTTGGAACCCTTC+AGG | - | chr2_3:9945030-9945049 | Msa0277410:intron | 55.0% | |
| TTGCGTATCCGACACCCCAA+TGG | + | chr2_3:9945549-9945568 | None:intergenic | 55.0% | |
| ATCTGCTGCAGACACCTCCA+AGG | + | chr2_3:9945614-9945633 | None:intergenic | 55.0% | |
| ! | GGGTGGCGTTGCTGTACTTT+TGG | - | chr2_3:9945681-9945700 | Msa0277410:CDS | 55.0% |
| CTGGGGAGTCTTGATGCCGT+TGG | - | chr2_3:9944823-9944842 | Msa0277410:intron | 60.0% | |
| !! | GGTGTTGCTGGATGGGGTAC+CGG | - | chr2_3:9944941-9944960 | Msa0277410:intron | 60.0% |
| !! | TGGGGTACCGGTCTCAAGCT+CGG | - | chr2_3:9944953-9944972 | Msa0277410:intron | 60.0% |
| GTCACTGCCGAGCTTGAGAC+CGG | + | chr2_3:9944963-9944982 | None:intergenic | 60.0% | |
| ! | AAGCTCGGCAGTGACTCGGC+TGG | - | chr2_3:9944968-9944987 | Msa0277410:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 9943414 | 9946096 | 9943414 | ID=Msa0277410;Name=Msa0277410 |
| chr2_3 | mRNA | 9943414 | 9946096 | 9943414 | ID=Msa0277410-mRNA-1;Parent=Msa0277410;Name=Msa0277410-mRNA-1;_AED=0.11;_eAED=0.11;_QI=159|1|1|1|1|1|3|292|407 |
| chr2_3 | exon | 9943414 | 9944026 | 9943414 | ID=Msa0277410-mRNA-1:exon:4455;Parent=Msa0277410-mRNA-1 |
| chr2_3 | exon | 9944459 | 9944713 | 9944459 | ID=Msa0277410-mRNA-1:exon:4454;Parent=Msa0277410-mRNA-1 |
| chr2_3 | exon | 9945290 | 9946096 | 9945290 | ID=Msa0277410-mRNA-1:exon:4453;Parent=Msa0277410-mRNA-1 |
| chr2_3 | five_prime_UTR | 9945938 | 9946096 | 9945938 | ID=Msa0277410-mRNA-1:five_prime_utr;Parent=Msa0277410-mRNA-1 |
| chr2_3 | CDS | 9945290 | 9945937 | 9945290 | ID=Msa0277410-mRNA-1:cds;Parent=Msa0277410-mRNA-1 |
| chr2_3 | CDS | 9944459 | 9944713 | 9944459 | ID=Msa0277410-mRNA-1:cds;Parent=Msa0277410-mRNA-1 |
| chr2_3 | CDS | 9943706 | 9944026 | 9943706 | ID=Msa0277410-mRNA-1:cds;Parent=Msa0277410-mRNA-1 |
| chr2_3 | three_prime_UTR | 9943414 | 9943705 | 9943414 | ID=Msa0277410-mRNA-1:three_prime_utr;Parent=Msa0277410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
