AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0787930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0787930 MtrunA17_Chr5g0446481 85.255 529 57 6 23 533 427 952 0.0 742
Msa0787930 MtrunA17_Chr3g0102341 54.852 237 83 8 33 248 411 644 4.31e-56 201
Msa0787930 MtrunA17_Chr3g0102341 51.737 259 102 7 296 533 528 784 1.18e-42 163
Msa0787930 MtrunA17_Chr3g0132011 37.262 263 134 7 33 271 136 391 7.45e-35 138
Msa0787930 MtrunA17_Chr3g0132011 35.223 247 142 9 290 525 249 488 3.23e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0787930 AT5G63550.2 37.247 247 123 5 33 248 135 380 2.43e-35 139
Msa0787930 AT5G63550.1 37.247 247 122 6 33 248 135 379 4.62e-34 135
Msa0787930 AT3G48710.1 40.000 205 108 6 23 220 85 281 4.35e-31 126
Msa0787930 AT5G55660.1 49.618 131 63 2 23 150 354 484 2.67e-30 126
Msa0787930 AT5G55660.1 43.243 148 82 2 385 532 597 742 6.04e-21 97.4
Msa0787930 AT4G26630.2 53.488 129 53 3 33 154 351 479 2.46e-26 114
Msa0787930 AT4G26630.2 48.322 149 69 4 385 533 594 734 2.12e-22 102
Msa0787930 AT4G26630.1 53.488 129 53 3 33 154 351 479 2.46e-26 114
Msa0787930 AT4G26630.1 48.322 149 69 4 385 533 594 734 2.12e-22 102
Msa0787930 AT1G64253.3 52.381 63 30 0 468 530 122 184 2.86e-13 68.9
Msa0787930 AT1G64253.2 52.381 63 30 0 468 530 254 316 1.86e-12 68.9
Msa0787930 AT1G64253.1 52.381 63 30 0 468 530 330 392 2.81e-12 68.9

Find 215 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAACATCCATGGAATTTA+TGG 0.079462 5_2:+74136814 Msa0787930:three_prime_UTR
TGCGAAGCTAATAGACTTTC+TGG 0.127423 5_2:+74133668 Msa0787930:CDS
CTCTTCAATTTGAAATTCTT+TGG 0.180004 5_2:-74132072 None:intergenic
ATGCTCTCATCTTTGGCTTC+AGG 0.206211 5_2:-74131807 None:intergenic
GTCATGGCATTGGATATATT+TGG 0.216495 5_2:+74130382 Msa0787930:five_prime_UTR
ACTTGAGAAAGTATTGAAAA+AGG 0.225143 5_2:+74131908 Msa0787930:five_prime_UTR
GTATTGATATTGTGTATTCT+AGG 0.238553 5_2:+74130650 Msa0787930:five_prime_UTR
GTATATACCTGCTTTGTCTT+TGG 0.248657 5_2:-74135444 None:intergenic
GTCTTTACAGATGCCTTTCT+TGG 0.280038 5_2:-74136603 None:intergenic
TGTGACCTTCAATAAGCTTT+TGG 0.284216 5_2:-74130683 None:intergenic
TGCCCTCATCTTTGCTTTCA+AGG 0.287502 5_2:-74131611 None:intergenic
TAGCATGTTAATGTCAGTTT+TGG 0.296740 5_2:-74130872 None:intergenic
AGGATAAGAAAGTTAATATT+GGG 0.305761 5_2:+74131445 Msa0787930:five_prime_UTR
TGATAAAGGGGAAGAATTAA+AGG 0.309808 5_2:+74131422 Msa0787930:five_prime_UTR
GAGGATAAGAAAGTTAATAT+TGG 0.311525 5_2:+74131444 Msa0787930:five_prime_UTR
TCATCCATGGCATCTAATTC+AGG 0.319577 5_2:-74131579 None:intergenic
AAAGATGATGATAATGGGTT+TGG 0.325952 5_2:+74131489 Msa0787930:five_prime_UTR
GAGGAGAAGAAAGCTGATAA+AGG 0.329787 5_2:+74131372 Msa0787930:five_prime_UTR
GAGGAGAAGAAAGCTGATAA+AGG 0.329787 5_2:+74131408 Msa0787930:five_prime_UTR
GATAAGAAAGATGATGATAA+TGG 0.331137 5_2:+74131483 Msa0787930:five_prime_UTR
TCTTTACAGATGCCTTTCTT+GGG 0.349273 5_2:-74136602 None:intergenic
TGCTCTCATCTTTGGCTTCA+GGG 0.352203 5_2:-74131806 None:intergenic
ATATTGTGAAATGGTGACTA+TGG 0.358528 5_2:-74130530 None:intergenic
GTGGGTCGACAATGGTTTCT+TGG 0.359192 5_2:-74135312 None:intergenic
AGAAGCAGAAACACGTATAT+AGG 0.366761 5_2:-74132304 None:intergenic
TTAACATCCATGGAATTTAT+GGG 0.367431 5_2:+74136815 Msa0787930:three_prime_UTR
TGGCATTTAAATTATCTAGA+AGG 0.368252 5_2:+74132372 Msa0787930:CDS
CTTGTATTTGCATTCCCAAC+TGG 0.374686 5_2:-74132929 None:intergenic
AGGAGAAGAAAGCTGATAAA+GGG 0.375612 5_2:+74131373 Msa0787930:five_prime_UTR
AGGAGAAGAAAGCTGATAAA+GGG 0.375612 5_2:+74131409 Msa0787930:five_prime_UTR
GCATGAAACTGCATAATTAC+TGG 0.376456 5_2:-74136885 None:intergenic
TTTGTTCTTGATCTTTCTTT+CGG 0.380948 5_2:-74136010 None:intergenic
TTCTTCCTTGAAAAGACCTT+GGG 0.390073 5_2:-74135368 None:intergenic
ACAGAAAACAATAACAAAAC+CGG 0.394251 5_2:+74131078 Msa0787930:five_prime_UTR
CGGTTGGTTGTAGGAGTTGT+TGG 0.399867 5_2:-74131990 None:intergenic
GAGGATTAGGTGTGATTGCT+TGG 0.414402 5_2:+74136707 Msa0787930:three_prime_UTR
ATTTCAGTTGGGATAGCAAT+TGG 0.414880 5_2:+74130407 Msa0787930:five_prime_UTR
CGTACAGGACGGTTGGTTGT+AGG 0.414924 5_2:-74131999 None:intergenic
TATATTTGGTTATTTCAGTT+GGG 0.416262 5_2:+74130396 Msa0787930:five_prime_UTR
AGGATAAGAAAGTTGATGTT+AGG 0.418299 5_2:+74131229 Msa0787930:five_prime_UTR
TAGTACAAAATATTGTGAAA+TGG 0.419255 5_2:-74130539 None:intergenic
GTAATGCCTGACCGAGGATT+AGG 0.419284 5_2:+74136694 Msa0787930:exon
AGGATAAGAAAGACGATGTA+GGG 0.420916 5_2:+74131193 Msa0787930:five_prime_UTR
TCCTACAAAAGAGGATTGTA+TGG 0.423332 5_2:-74132421 None:intergenic
ATAGCAAAACAAGGCTCAAC+AGG 0.431493 5_2:+74133886 Msa0787930:CDS
GATATTGTGTATTCTAGGAT+TGG 0.432331 5_2:+74130655 Msa0787930:five_prime_UTR
CTTCTTCCTTGAAAAGACCT+TGG 0.434088 5_2:-74135369 None:intergenic
AGCAGGAAAGGAAAGGTTGA+TGG 0.434370 5_2:+74131735 Msa0787930:five_prime_UTR
CAGAGAGGATGATAAGGATA+AGG 0.435697 5_2:+74131659 Msa0787930:five_prime_UTR
TGGGTCGACAATGGTTTCTT+GGG 0.436115 5_2:-74135311 None:intergenic
AGAGAATACATAGATCATAA+TGG 0.438032 5_2:-74132245 None:intergenic
TGGGGAGGAAGAACTAGAAA+TGG 0.438759 5_2:+74131026 Msa0787930:five_prime_UTR
AACAATAACAAAACCGGGGA+TGG 0.443425 5_2:+74131084 Msa0787930:five_prime_UTR
ATAAGAAAGATGATGATAAT+GGG 0.443554 5_2:+74131484 Msa0787930:five_prime_UTR
AAACAAGGCTCAACAGGATC+TGG 0.448149 5_2:+74133892 Msa0787930:CDS
AAGATGATGATAATGGGTTT+GGG 0.451200 5_2:+74131490 Msa0787930:five_prime_UTR
TTTGTCTTTGGAGGAAGACT+TGG 0.451286 5_2:-74135432 None:intergenic
CCTTTCCTCTCCTACAAAAG+AGG 0.454663 5_2:-74132430 None:intergenic
ATATATTTGGTTATTTCAGT+TGG 0.455700 5_2:+74130395 Msa0787930:five_prime_UTR
TATACCTGCTTTGTCTTTGG+AGG 0.456414 5_2:-74135441 None:intergenic
GAGGGGAAGAAAGCTGATGA+AGG 0.456835 5_2:+74131300 Msa0787930:five_prime_UTR
AAGAGAACGAAGAGAACGAC+AGG 0.458455 5_2:+74136671 Msa0787930:CDS
GAAAGAAGAATTCAAACAAA+TGG 0.459944 5_2:-74132223 None:intergenic
GGATAAGAAAGTCAATGAAA+GGG 0.462957 5_2:+74131266 Msa0787930:five_prime_UTR
AAAACCACGCTCGGCACGAA+AGG 0.466168 5_2:+74135283 Msa0787930:CDS
ATCACTTGCAGAACAAGAAA+AGG 0.466254 5_2:+74133716 Msa0787930:CDS
AAACAAAGTTCATCGAGATC+TGG 0.467180 5_2:+74134835 Msa0787930:CDS
GAGGATGAGAAAGTTGTTGA+AGG 0.467739 5_2:+74131120 Msa0787930:five_prime_UTR
AGATGAGGAGGTGGGCGATA+AGG 0.469853 5_2:+74131848 Msa0787930:five_prime_UTR
GCAGGAAAGGAAAGGTTGAT+GGG 0.470005 5_2:+74131736 Msa0787930:five_prime_UTR
AGGATAAGAAAGTCAATGAA+AGG 0.471311 5_2:+74131265 Msa0787930:five_prime_UTR
TCTTTCACTTTGCAGGGTCG+TGG 0.471388 5_2:+74132164 Msa0787930:intron
GGAGGTGGGCGATAAGGATA+AGG 0.471989 5_2:+74131854 Msa0787930:five_prime_UTR
AGAAGACAGAGAGGATGATA+AGG 0.474281 5_2:+74131653 Msa0787930:five_prime_UTR
TCCCCACTTTCAGATTTCTC+CGG 0.474376 5_2:-74135152 None:intergenic
CAAATGGAACACTATACCAT+TGG 0.479265 5_2:-74132207 None:intergenic
ATTGATTTAGTGATAAGTGA+TGG 0.480612 5_2:+74130319 Msa0787930:five_prime_UTR
TGACAAATCTGAAGACGAAA+AGG 0.483306 5_2:+74134180 Msa0787930:CDS
AAACAAGGTTCATCAAGATC+TGG 0.484574 5_2:+74134358 Msa0787930:CDS
TTGATTTAGTGATAAGTGAT+GGG 0.486399 5_2:+74130320 Msa0787930:five_prime_UTR
ACTGATTTCCTTTCACGTAC+AGG 0.487334 5_2:-74132014 None:intergenic
ATGTAACAAAGAGAAGTTGC+TGG 0.487637 5_2:+74132883 Msa0787930:CDS
TGAAAGGGGAGAGATAAAAG+AGG 0.488844 5_2:+74131281 Msa0787930:five_prime_UTR
ATCTGCTTGACGTACCAGTT+GGG 0.489298 5_2:+74132915 Msa0787930:CDS
AAAACTGACATTAACATGCT+AGG 0.489488 5_2:+74130874 Msa0787930:five_prime_UTR
TTTGTTCCCCATAAATTCCA+TGG 0.489641 5_2:-74136822 None:intergenic
CAAAGATGAGAGCATTGAAA+AGG 0.490075 5_2:+74131815 Msa0787930:five_prime_UTR
GAGGACAAGCATGCTGATGA+AGG 0.491058 5_2:+74131156 Msa0787930:five_prime_UTR
AAACCACGCTCGGCACGAAA+GGG 0.493787 5_2:+74135284 Msa0787930:CDS
CTTGTAAATCTTAACATCCA+TGG 0.494733 5_2:+74136805 Msa0787930:three_prime_UTR
GAAATTGATAAGAAAGCTGA+TGG 0.495376 5_2:+74131006 Msa0787930:five_prime_UTR
CAAAGATGAGGGCAGTGAAA+AGG 0.496877 5_2:+74131620 Msa0787930:five_prime_UTR
GAAAAGTCGAGATGAGGAGG+TGG 0.497804 5_2:+74131839 Msa0787930:five_prime_UTR
AAATGGAACACTATACCATT+GGG 0.498308 5_2:-74132206 None:intergenic
GAGGATAAGAAAGACGATGT+AGG 0.498637 5_2:+74131192 Msa0787930:five_prime_UTR
CATCACTGTTTCAAACAGGT+TGG 0.499557 5_2:-74130448 None:intergenic
TAATACCAAAAGCTTATTGA+AGG 0.503564 5_2:+74130678 Msa0787930:five_prime_UTR
ATGTTATCTAAGCACTTCAC+TGG 0.504941 5_2:-74130814 None:intergenic
TACGTAGCAGAGGAGAGAAA+AGG 0.505371 5_2:+74135029 Msa0787930:CDS
ATCACACCTAATCCTCGGTC+AGG 0.506796 5_2:-74136700 None:intergenic
ACCCACTCTGCATCTGATCA+TGG 0.507897 5_2:+74135329 Msa0787930:CDS
CGTGGATCTCACCCCAAGAA+AGG 0.508523 5_2:+74136590 Msa0787930:CDS
AAACTGACATTAACATGCTA+GGG 0.509499 5_2:+74130875 Msa0787930:five_prime_UTR
CAATAACAAAACCGGGGATG+GGG 0.511346 5_2:+74131086 Msa0787930:five_prime_UTR
ACAATAACAAAACCGGGGAT+GGG 0.512246 5_2:+74131085 Msa0787930:five_prime_UTR
AGGGGAAGAAAGCTGATGAA+GGG 0.512575 5_2:+74131301 Msa0787930:five_prime_UTR
GAGGATAAGAAAGACGATGC+AGG 0.513407 5_2:+74131336 Msa0787930:five_prime_UTR
GAAGCCTGAATTAGATGCCA+TGG 0.514285 5_2:+74131575 Msa0787930:five_prime_UTR
AAAGAAGGACCCGGAACCTA+AGG 0.514727 5_2:+74130921 Msa0787930:five_prime_UTR
GGAGAAGAAAGCTGATAAAG+GGG 0.515860 5_2:+74131374 Msa0787930:five_prime_UTR
GGAGAAGAAAGCTGATAAAG+GGG 0.515860 5_2:+74131410 Msa0787930:five_prime_UTR
GGAGAAAAGTCGAGATGAGG+AGG 0.517122 5_2:+74131836 Msa0787930:five_prime_UTR
AAAGGGTGGGAGAGGAAATG+TGG 0.517698 5_2:+74131926 Msa0787930:five_prime_UTR
GACTATTATTCAGCAAGAGC+TGG 0.518089 5_2:+74136623 Msa0787930:CDS
GAAAGGGGAGAGATAAAAGA+GGG 0.521231 5_2:+74131282 Msa0787930:five_prime_UTR
CGCAAGCGCATAGGAAAACA+AGG 0.526536 5_2:+74134343 Msa0787930:CDS
GAAGGAACTGAAGAAGATAG+AGG 0.526671 5_2:+74131779 Msa0787930:five_prime_UTR
CTTTACAGATGCCTTTCTTG+GGG 0.527928 5_2:-74136601 None:intergenic
GGGGAAGAAAGCTGATGAAG+GGG 0.527985 5_2:+74131302 Msa0787930:five_prime_UTR
TAAAGGGGAAGAATTAAAAG+AGG 0.528111 5_2:+74131389 Msa0787930:five_prime_UTR
TTGCGTAACTGATCATCACT+CGG 0.528843 5_2:-74136045 None:intergenic
TGAGTCTGAGGAAGAACAGA+AGG 0.530398 5_2:+74135070 Msa0787930:CDS
GATAAGAAAGTCAATGAAAG+GGG 0.530923 5_2:+74131267 Msa0787930:five_prime_UTR
TGGGAGAGGAAATGTGGAGA+AGG 0.533504 5_2:+74131932 Msa0787930:five_prime_UTR
CAAAGAATTTCAAATTGAAG+AGG 0.534513 5_2:+74132073 Msa0787930:five_prime_UTR
TTTAGCTTTACTTTGTGCAA+CGG 0.534541 5_2:-74135243 None:intergenic
CAGAAAACAATAACAAAACC+GGG 0.534823 5_2:+74131079 Msa0787930:five_prime_UTR
TGTTAGGCAAGAGGTAAAAG+AGG 0.536428 5_2:+74131245 Msa0787930:five_prime_UTR
CAAATCCAAGGATGAAAAGC+CGG 0.539070 5_2:+74135133 Msa0787930:CDS
AGAAGACTCGAGTGAAAAGA+AGG 0.540152 5_2:+74130906 Msa0787930:five_prime_UTR
AACAAAACCGGGGATGGGGA+AGG 0.541916 5_2:+74131090 Msa0787930:five_prime_UTR
AAGGATACTCTCTTCATCCA+TGG 0.543834 5_2:-74131592 None:intergenic
TGAAGGAGAAGAACTAAAAG+AGG 0.545142 5_2:+74131173 Msa0787930:five_prime_UTR
ATTTAAATTATCTAGAAGGA+AGG 0.545571 5_2:+74132376 Msa0787930:CDS
GTCAAAGATTTGAAAGAGGA+TGG 0.546722 5_2:+74130970 Msa0787930:five_prime_UTR
CCTTTCACGTACAGGACGGT+TGG 0.549359 5_2:-74132006 None:intergenic
TGTAGGGGAAGAAAGAAAAG+AGG 0.551335 5_2:+74131209 Msa0787930:five_prime_UTR
GAAAGTTGATGTTAGGCAAG+AGG 0.551951 5_2:+74131236 Msa0787930:five_prime_UTR
TGCTGTCAAAGATTTGAAAG+AGG 0.553144 5_2:+74130966 Msa0787930:five_prime_UTR
GATCTGCTTGACGTACCAGT+TGG 0.553892 5_2:+74132914 Msa0787930:CDS
TATTGTGAAATGGTGACTAT+GGG 0.553990 5_2:-74130529 None:intergenic
GGATAAGAAAGACGATGTAG+GGG 0.555055 5_2:+74131194 Msa0787930:five_prime_UTR
AGAGGATGGTATAAAAGCAA+TGG 0.556456 5_2:+74130984 Msa0787930:five_prime_UTR
AAAGAAAATGAAGGAACTGA+AGG 0.559025 5_2:+74131959 Msa0787930:five_prime_UTR
AGGATGAGAAAGTTGTTGAA+GGG 0.560754 5_2:+74131121 Msa0787930:five_prime_UTR
GTTCCCTTTCGTGCCGAGCG+TGG 0.562593 5_2:-74135287 None:intergenic
ATCATCAAGACGTTCTGCTA+AGG 0.566618 5_2:+74134387 Msa0787930:CDS
ATGGATAAGCAAGCTGATGA+TGG 0.569226 5_2:+74131045 Msa0787930:five_prime_UTR
CACGTCAAGACGTTCTGCTA+AGG 0.570043 5_2:+74134864 Msa0787930:CDS
AGCCGGAGAAATCTGAAAGT+GGG 0.571709 5_2:+74135150 Msa0787930:CDS
GATTGCTTGGAGATATACAT+AGG 0.572332 5_2:+74136720 Msa0787930:three_prime_UTR
AGGATAAGAAAGACGATGCA+GGG 0.573511 5_2:+74131337 Msa0787930:five_prime_UTR
CAGTTGGGAATGCAAATACA+AGG 0.581246 5_2:+74132930 Msa0787930:CDS
AAGCCGGAGAAATCTGAAAG+TGG 0.581270 5_2:+74135149 Msa0787930:CDS
AACGTCAAGACGATCTGCTA+AGG 0.582795 5_2:+74133921 Msa0787930:CDS
TGGGAATGCAAATACAAGGA+AGG 0.584888 5_2:+74132934 Msa0787930:CDS
AAAGGAGAAAAGTCGAGATG+AGG 0.585952 5_2:+74131833 Msa0787930:five_prime_UTR
GGAAGACTTGGTGAGAGTTG+AGG 0.586612 5_2:-74135420 None:intergenic
CAGGAAAGGAAAGGTTGATG+GGG 0.587720 5_2:+74131737 Msa0787930:five_prime_UTR
CCAACCGTCCTGTACGTGAA+AGG 0.587863 5_2:+74132006 Msa0787930:five_prime_UTR
AGTTAAAGCAAAACCACGCT+CGG 0.590668 5_2:+74135274 Msa0787930:CDS
CACTGTTCTTGACAAATCCA+AGG 0.592153 5_2:+74135121 Msa0787930:CDS
TGAAGGGAAAGAAATAAAAG+AGG 0.595089 5_2:+74131137 Msa0787930:five_prime_UTR
CTCGAGTGAAAAGAAGGACC+CGG 0.597637 5_2:+74130912 Msa0787930:five_prime_UTR
AAGGAAATCAGTTCAGCGGT+TGG 0.598635 5_2:+74132025 Msa0787930:five_prime_UTR
ACCGAGTAGCTTCAAAATGT+CGG 0.599252 5_2:-74136309 None:intergenic
GAAAATGAAGGAACTGAAGG+AGG 0.601330 5_2:+74131962 Msa0787930:five_prime_UTR
GTGAAGTGCTTAGATAACAT+TGG 0.603102 5_2:+74130817 Msa0787930:five_prime_UTR
TGATAAGAAAGCTGATGGGG+AGG 0.606760 5_2:+74131011 Msa0787930:five_prime_UTR
AAGCAATCACACCTAATCCT+CGG 0.607772 5_2:-74136705 None:intergenic
ACCATGATCAGATGCAGAGT+GGG 0.607984 5_2:-74135330 None:intergenic
TCTTCCTCCAAAGACAAAGC+AGG 0.608589 5_2:+74135437 Msa0787930:CDS
GATGCAGAGTGGGTCGACAA+TGG 0.612997 5_2:-74135320 None:intergenic
TGCAGGGGTAGAATTAAAAG+AGG 0.613557 5_2:+74131353 Msa0787930:five_prime_UTR
AAAGGGGAGAGATAAAAGAG+GGG 0.614914 5_2:+74131283 Msa0787930:five_prime_UTR
GGATAAGAAAGTTAATATTG+GGG 0.615197 5_2:+74131446 Msa0787930:five_prime_UTR
TATCCTTGAAAGCAAAGATG+AGG 0.617284 5_2:+74131608 Msa0787930:five_prime_UTR
TGAAGATTCTTACGTAGCAG+AGG 0.619042 5_2:+74135019 Msa0787930:CDS
AAAAGTCGAGATGAGGAGGT+GGG 0.619228 5_2:+74131840 Msa0787930:five_prime_UTR
TAACATCCATGGAATTTATG+GGG 0.619414 5_2:+74136816 Msa0787930:three_prime_UTR
AAGAAGGACCCGGAACCTAA+GGG 0.623031 5_2:+74130922 Msa0787930:five_prime_UTR
CACCATGATCAGATGCAGAG+TGG 0.623135 5_2:-74135331 None:intergenic
GGATAAGAAAGACGATGCAG+GGG 0.625327 5_2:+74131338 Msa0787930:five_prime_UTR
TGCGTAACTGATCATCACTC+GGG 0.628020 5_2:-74136044 None:intergenic
TCTGATCATGGTGATAGTGA+TGG 0.628093 5_2:+74135341 Msa0787930:CDS
GCCGGAGAAATCTGAAAGTG+GGG 0.631822 5_2:+74135151 Msa0787930:CDS
AAATTGATAAGAAAGCTGAT+GGG 0.632945 5_2:+74131007 Msa0787930:five_prime_UTR
TGATTTAGTGATAAGTGATG+GGG 0.639144 5_2:+74130321 Msa0787930:five_prime_UTR
TGACACGGAAGATGAGTCTG+AGG 0.639914 5_2:+74135058 Msa0787930:CDS
ATTTCCTTTCACGTACAGGA+CGG 0.640045 5_2:-74132010 None:intergenic
CTTAGCAGAACGTCTTGACG+TGG 0.642847 5_2:-74134863 None:intergenic
AGATAACATTGGCATGAGTG+AGG 0.643975 5_2:+74130828 Msa0787930:five_prime_UTR
ATCCTTGAAAGCAAAGATGA+GGG 0.644303 5_2:+74131609 Msa0787930:five_prime_UTR
TTTATGGGGAACAAACCAGT+AGG 0.645149 5_2:+74136830 Msa0787930:three_prime_UTR
TACAAAAGAGGATTGTATGG+AGG 0.648735 5_2:-74132418 None:intergenic
GGATGGGGAAGGAATAAAAG+AGG 0.653046 5_2:+74131101 Msa0787930:five_prime_UTR
TGATAGTGATGGAAGTCCCA+AGG 0.653632 5_2:+74135352 Msa0787930:CDS
TAAAGGGGAAGAATTAAAGG+AGG 0.653663 5_2:+74131425 Msa0787930:five_prime_UTR
CCTTTAGAAAACATACCCAA+TGG 0.655466 5_2:+74132191 Msa0787930:five_prime_UTR
TTAGCAGATCGTCTTGACGT+TGG 0.655765 5_2:-74133919 None:intergenic
AATTGATAAGAAAGCTGATG+GGG 0.657202 5_2:+74131008 Msa0787930:five_prime_UTR
AAACAGCGCATAGCAAAACA+AGG 0.662113 5_2:+74133877 Msa0787930:CDS
TGAAACAGTGATGAAAATTG+CGG 0.662904 5_2:+74130458 Msa0787930:five_prime_UTR
GATACACTTGTTGTGACTTG+AGG 0.670370 5_2:-74133696 None:intergenic
GAGAAAAGGATTTACTGACA+CGG 0.671908 5_2:+74135043 Msa0787930:CDS
AAGGACCCGGAACCTAAGGG+AGG 0.685854 5_2:+74130925 Msa0787930:five_prime_UTR
TTCAGGTAAGCAATTCGACG+TGG 0.687225 5_2:+74136572 Msa0787930:intron
GTGAAAGGAAATCAGTTCAG+CGG 0.696158 5_2:+74132021 Msa0787930:five_prime_UTR
TTTCACTCGAGTCTTCTAGG+TGG 0.696693 5_2:-74130900 None:intergenic
ATTGTGAAATGGTGACTATG+GGG 0.697187 5_2:-74130528 None:intergenic
TGGGAATGACAAATTCAGTG+AGG 0.705125 5_2:+74131509 Msa0787930:five_prime_UTR
AGAGAACGAAGAGAACGACA+GGG 0.709851 5_2:+74136672 Msa0787930:CDS
TTGTGAAATGGTGACTATGG+GGG 0.710251 5_2:-74130527 None:intergenic
AGAAAACAATAACAAAACCG+GGG 0.717065 5_2:+74131080 Msa0787930:five_prime_UTR
GACAGGGTAATGCCTGACCG+AGG 0.722362 5_2:+74136688 Msa0787930:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAATAATATTATAAAA+AGG + chr5_2:74135718-74135737 Msa0787930:intron 0.0%
!! ACATTTAATCATAAAATTAA+GGG - chr5_2:74135533-74135552 None:intergenic 10.0%
!! AACATTTAATCATAAAATTA+AGG - chr5_2:74135534-74135553 None:intergenic 10.0%
!!! ATTTTATGATTAAATGTTTT+TGG + chr5_2:74135536-74135555 Msa0787930:intron 10.0%
!!! TTTTTTTTACAAGAAAAAAA+AGG - chr5_2:74135606-74135625 None:intergenic 10.0%
!! TTAAAATTAAAATCAACATT+AGG - chr5_2:74136209-74136228 None:intergenic 10.0%
!!! TTTTTTTTTTTTACACTGAT+AGG + chr5_2:74130767-74130786 Msa0787930:intron 15.0%
!!! ATATTTTAACAGATAACAAA+TGG - chr5_2:74132507-74132526 None:intergenic 15.0%
!! ATTCATTATAGACAAAAAAA+GGG - chr5_2:74133386-74133405 None:intergenic 15.0%
!! AATTCATTATAGACAAAAAA+AGG - chr5_2:74133387-74133406 None:intergenic 15.0%
!! TGATTTATAACCAATAAATT+TGG + chr5_2:74134012-74134031 Msa0787930:intron 15.0%
!!! TGCTTTAAAACTAATAAATT+TGG + chr5_2:74134495-74134514 Msa0787930:intron 15.0%
!!! AATATTAAACCTCTAAAAAA+AGG - chr5_2:74135638-74135657 None:intergenic 15.0%
!!! AAATAACATATTTTTAACGA+AGG + chr5_2:74135750-74135769 Msa0787930:intron 15.0%
!!! AATAACATATTTTTAACGAA+GGG + chr5_2:74135751-74135770 Msa0787930:intron 15.0%
!! TGAAATCTGTAATATATAAA+GGG - chr5_2:74135817-74135836 None:intergenic 15.0%
!! ATGAAATCTGTAATATATAA+AGG - chr5_2:74135818-74135837 None:intergenic 15.0%
!! AAAAAGGTAATAATAAAGAA+GGG - chr5_2:74136340-74136359 None:intergenic 15.0%
!!! ATATATTTGGTTATTTCAGT+TGG + chr5_2:74130395-74130414 Msa0787930:five_prime_UTR 20.0%
!!! TATATTTGGTTATTTCAGTT+GGG + chr5_2:74130396-74130415 Msa0787930:five_prime_UTR 20.0%
!! TAGTACAAAATATTGTGAAA+TGG - chr5_2:74130542-74130561 None:intergenic 20.0%
!!! TCACAATATTTTGTACTAAA+TGG + chr5_2:74130544-74130563 Msa0787930:five_prime_UTR 20.0%
!!! TTGAAACAATCTTTCATTTT+AGG + chr5_2:74130613-74130632 Msa0787930:five_prime_UTR 20.0%
!! AGGATAAGAAAGTTAATATT+GGG + chr5_2:74131445-74131464 Msa0787930:five_prime_UTR 20.0%
!! ATAAGAAAGATGATGATAAT+GGG + chr5_2:74131484-74131503 Msa0787930:five_prime_UTR 20.0%
!! TTCAATATAACACACAATTA+AGG - chr5_2:74132123-74132142 None:intergenic 20.0%
!! ATTTAAATTATCTAGAAGGA+AGG + chr5_2:74132376-74132395 Msa0787930:CDS 20.0%
!! CTGAAATGAAAAAAATTAGA+TGG - chr5_2:74132474-74132493 None:intergenic 20.0%
!! AATTTCATTATTCAAGGTAA+GGG - chr5_2:74132593-74132612 None:intergenic 20.0%
!! TAATTTCATTATTCAAGGTA+AGG - chr5_2:74132594-74132613 None:intergenic 20.0%
!! ACCTTGAATAATGAAATTAA+TGG + chr5_2:74132595-74132614 Msa0787930:intron 20.0%
!! TCCATTAATTTCATTATTCA+AGG - chr5_2:74132599-74132618 None:intergenic 20.0%
!!! ATTAAGAAAAAAAGGTTTTC+TGG + chr5_2:74132684-74132703 Msa0787930:CDS 20.0%
!!! TTGAATTTTTGTAACATTAC+AGG + chr5_2:74133090-74133109 Msa0787930:intron 20.0%
!!! AATCAATATGTTAAAAGCAT+CGG - chr5_2:74133411-74133430 None:intergenic 20.0%
!! ATTTAGATATATACCATAAG+TGG + chr5_2:74133984-74134003 Msa0787930:intron 20.0%
!!! ATTGTTTTTTTTAGAGAAAG+TGG + chr5_2:74134467-74134486 Msa0787930:intron 20.0%
!! AAATGTAACTAGATATATGA+TGG + chr5_2:74134919-74134938 Msa0787930:intron 20.0%
!! AAGAAGAAAAATGAAAAACA+AGG + chr5_2:74135386-74135405 Msa0787930:CDS 20.0%
!! ATAAAGGGAATAATCTATTT+GGG - chr5_2:74135802-74135821 None:intergenic 20.0%
!! TATAAAGGGAATAATCTATT+TGG - chr5_2:74135803-74135822 None:intergenic 20.0%
!! AGATTTATAAACTACATAAG+AGG - chr5_2:74135959-74135978 None:intergenic 20.0%
!! CAAAAAGGTAATAATAAAGA+AGG - chr5_2:74136341-74136360 None:intergenic 20.0%
!! TCATTATTAAACTTAAACCA+AGG - chr5_2:74136365-74136384 None:intergenic 20.0%
! GAAAAAATGTTAGAACAACA+TGG - chr5_2:74130299-74130318 None:intergenic 25.0%
!! ATTGATTTAGTGATAAGTGA+TGG + chr5_2:74130319-74130338 Msa0787930:five_prime_UTR 25.0%
! TTGATTTAGTGATAAGTGAT+GGG + chr5_2:74130320-74130339 Msa0787930:five_prime_UTR 25.0%
!!! AATTTGTTTTCAACTTGTCA+TGG + chr5_2:74130366-74130385 Msa0787930:five_prime_UTR 25.0%
!! GTATTGATATTGTGTATTCT+AGG + chr5_2:74130650-74130669 Msa0787930:five_prime_UTR 25.0%
! TAATACCAAAAGCTTATTGA+AGG + chr5_2:74130678-74130697 Msa0787930:five_prime_UTR 25.0%
! AAATTGATAAGAAAGCTGAT+GGG + chr5_2:74131007-74131026 Msa0787930:five_prime_UTR 25.0%
! ACAGAAAACAATAACAAAAC+CGG + chr5_2:74131078-74131097 Msa0787930:five_prime_UTR 25.0%
! GAGGATAAGAAAGTTAATAT+TGG + chr5_2:74131444-74131463 Msa0787930:five_prime_UTR 25.0%
! GGATAAGAAAGTTAATATTG+GGG + chr5_2:74131446-74131465 Msa0787930:five_prime_UTR 25.0%
! GATAAGAAAGATGATGATAA+TGG + chr5_2:74131483-74131502 Msa0787930:five_prime_UTR 25.0%
! GAATGTGAAAAAGAAAATGA+AGG + chr5_2:74131761-74131780 Msa0787930:five_prime_UTR 25.0%
!!! ACTTGAGAAAGTATTGAAAA+AGG + chr5_2:74131908-74131927 Msa0787930:five_prime_UTR 25.0%
!!! CTTGAGAAAGTATTGAAAAA+GGG + chr5_2:74131909-74131928 Msa0787930:five_prime_UTR 25.0%
!! CTCTTCAATTTGAAATTCTT+TGG - chr5_2:74132075-74132094 None:intergenic 25.0%
! CAAAGAATTTCAAATTGAAG+AGG + chr5_2:74132073-74132092 Msa0787930:five_prime_UTR 25.0%
! GAAAGAAGAATTCAAACAAA+TGG - chr5_2:74132226-74132245 None:intergenic 25.0%
! AGAGAATACATAGATCATAA+TGG - chr5_2:74132248-74132267 None:intergenic 25.0%
! TGGCATTTAAATTATCTAGA+AGG + chr5_2:74132372-74132391 Msa0787930:CDS 25.0%
!!! TCATTTTGTTATATATGACC+TGG - chr5_2:74132751-74132770 None:intergenic 25.0%
! CTCTAATTCATTATAGACAA+CGG - chr5_2:74133159-74133178 None:intergenic 25.0%
! GTTGTCTATAATGAATTAGA+GGG + chr5_2:74133158-74133177 Msa0787930:intron 25.0%
! TTGTCTATAATGAATTAGAG+GGG + chr5_2:74133159-74133178 Msa0787930:intron 25.0%
! AGATGTTAAGTCAACAAAAA+AGG - chr5_2:74133586-74133605 None:intergenic 25.0%
! TATTAATCTTCTACATATGC+AGG + chr5_2:74133635-74133654 Msa0787930:intron 25.0%
! AGGAAAAAGTTGAAAAGAAA+GGG - chr5_2:74133754-74133773 None:intergenic 25.0%
! ATAAATCACTTTACCACTTA+TGG - chr5_2:74134000-74134019 None:intergenic 25.0%
! GATTAGAAAGCCAAATTTAT+TGG - chr5_2:74134025-74134044 None:intergenic 25.0%
!!! ATTTGGCTTTCTAATCTTTA+TGG + chr5_2:74134029-74134048 Msa0787930:intron 25.0%
! GAAAAATGAAGAAAACAAAG+AGG + chr5_2:74134138-74134157 Msa0787930:CDS 25.0%
! TGAAAAATCTGAAGATGAAA+AGG + chr5_2:74134657-74134676 Msa0787930:CDS 25.0%
! GGAAAAGTTTGAAAAGAAAA+GGG - chr5_2:74134695-74134714 None:intergenic 25.0%
! AGAATAAAATAACACACTAG+GGG - chr5_2:74134716-74134735 None:intergenic 25.0%
! GAGAATAAAATAACACACTA+GGG - chr5_2:74134717-74134736 None:intergenic 25.0%
! AGAGAATAAAATAACACACT+AGG - chr5_2:74134718-74134737 None:intergenic 25.0%
!! TACTTTTATCAGTCGATTAA+AGG + chr5_2:74134790-74134809 Msa0787930:intron 25.0%
!!! TGCTTTAAAACCGATAAATT+TGG + chr5_2:74134953-74134972 Msa0787930:intron 25.0%
! GATTAGAAAGCCAAATTTAT+CGG - chr5_2:74134025-74134044 None:intergenic 25.0%
!!! AATTTGGCTTTCTAATCTTT+AGG + chr5_2:74134028-74134047 Msa0787930:intron 25.0%
!!! ATTTGGCTTTCTAATCTTTA+GGG + chr5_2:74134029-74134048 Msa0787930:intron 25.0%
! TAAACAAAAAAACTGAGAAG+CGG - chr5_2:74135485-74135504 None:intergenic 25.0%
! ACTAGAAATATTTAGAAAGG+CGG - chr5_2:74135509-74135528 None:intergenic 25.0%
! GGTACTAGAAATATTTAGAA+AGG - chr5_2:74135512-74135531 None:intergenic 25.0%
! TGGCAAAGAAGATTAAATTA+AGG + chr5_2:74135556-74135575 Msa0787930:intron 25.0%
!!! ATCATTGTTCCTTTTTTTAG+AGG + chr5_2:74135626-74135645 Msa0787930:intron 25.0%
! TAATATTGTTCCATTGTAAG+AGG + chr5_2:74135651-74135670 Msa0787930:intron 25.0%
! TTTGTTCTTGATCTTTCTTT+CGG - chr5_2:74136013-74136032 None:intergenic 25.0%
! TAAAATCAACATTAGGATGT+AGG - chr5_2:74136202-74136221 None:intergenic 25.0%
!! TATTATTACCTTTTTGTCCT+TGG + chr5_2:74136345-74136364 Msa0787930:intron 25.0%
!!! TTTTGACTAGTTATGCATTT+TGG + chr5_2:74136752-74136771 Msa0787930:three_prime_UTR 25.0%
!!! TTTGACTAGTTATGCATTTT+GGG + chr5_2:74136753-74136772 Msa0787930:three_prime_UTR 25.0%
! TTAACATCCATGGAATTTAT+GGG + chr5_2:74136815-74136834 Msa0787930:three_prime_UTR 25.0%
!! AATATGTAAAGAAGCTTTTG+TGG + chr5_2:74136922-74136941 Msa0787930:three_prime_UTR 25.0%
TGATTTAGTGATAAGTGATG+GGG + chr5_2:74130321-74130340 Msa0787930:five_prime_UTR 30.0%
! TTTTCATCACTGTTTCAAAC+AGG - chr5_2:74130455-74130474 None:intergenic 30.0%
TGAAACAGTGATGAAAATTG+CGG + chr5_2:74130458-74130477 Msa0787930:five_prime_UTR 30.0%
TATTGTGAAATGGTGACTAT+GGG - chr5_2:74130532-74130551 None:intergenic 30.0%
ATATTGTGAAATGGTGACTA+TGG - chr5_2:74130533-74130552 None:intergenic 30.0%
!! GATATTGTGTATTCTAGGAT+TGG + chr5_2:74130655-74130674 Msa0787930:five_prime_UTR 30.0%
CAACATGCAAAAAAAGAAAG+AGG - chr5_2:74130718-74130737 None:intergenic 30.0%
! TAGCATGTTAATGTCAGTTT+TGG - chr5_2:74130875-74130894 None:intergenic 30.0%
AAAACTGACATTAACATGCT+AGG + chr5_2:74130874-74130893 Msa0787930:five_prime_UTR 30.0%
AAACTGACATTAACATGCTA+GGG + chr5_2:74130875-74130894 Msa0787930:five_prime_UTR 30.0%
GAAATTGATAAGAAAGCTGA+TGG + chr5_2:74131006-74131025 Msa0787930:five_prime_UTR 30.0%
AATTGATAAGAAAGCTGATG+GGG + chr5_2:74131008-74131027 Msa0787930:five_prime_UTR 30.0%
CAGAAAACAATAACAAAACC+GGG + chr5_2:74131079-74131098 Msa0787930:five_prime_UTR 30.0%
AGAAAACAATAACAAAACCG+GGG + chr5_2:74131080-74131099 Msa0787930:five_prime_UTR 30.0%
TGAAGGGAAAGAAATAAAAG+AGG + chr5_2:74131137-74131156 Msa0787930:five_prime_UTR 30.0%
!! AGGATAAGAAAGTTGATGTT+AGG + chr5_2:74131229-74131248 Msa0787930:five_prime_UTR 30.0%
AGGATAAGAAAGTCAATGAA+AGG + chr5_2:74131265-74131284 Msa0787930:five_prime_UTR 30.0%
GGATAAGAAAGTCAATGAAA+GGG + chr5_2:74131266-74131285 Msa0787930:five_prime_UTR 30.0%
GATAAGAAAGTCAATGAAAG+GGG + chr5_2:74131267-74131286 Msa0787930:five_prime_UTR 30.0%
TGAAGGGGAAAAATTAAAAG+AGG + chr5_2:74131317-74131336 Msa0787930:five_prime_UTR 30.0%
TAAAGGGGAAGAATTAAAAG+AGG + chr5_2:74131389-74131408 Msa0787930:five_prime_UTR 30.0%
TGATAAAGGGGAAGAATTAA+AGG + chr5_2:74131386-74131405 Msa0787930:five_prime_UTR 30.0%
!! AAAGATGATGATAATGGGTT+TGG + chr5_2:74131489-74131508 Msa0787930:five_prime_UTR 30.0%
!! AAGATGATGATAATGGGTTT+GGG + chr5_2:74131490-74131509 Msa0787930:five_prime_UTR 30.0%
AGAAGAGATTGAAAAAAAGC+AGG + chr5_2:74131718-74131737 Msa0787930:five_prime_UTR 30.0%
AGATTGAAAAAAAGCAGGAA+AGG + chr5_2:74131723-74131742 Msa0787930:five_prime_UTR 30.0%
!! AGAAAGTATTGAAAAAGGGT+GGG + chr5_2:74131913-74131932 Msa0787930:five_prime_UTR 30.0%
AAAGAAAATGAAGGAACTGA+AGG + chr5_2:74131770-74131789 Msa0787930:five_prime_UTR 30.0%
! TAGTTTTTCTTTCACTTTGC+AGG + chr5_2:74132157-74132176 Msa0787930:intron 30.0%
! AGTTTTTCTTTCACTTTGCA+GGG + chr5_2:74132158-74132177 Msa0787930:intron 30.0%
AAATGGAACACTATACCATT+GGG - chr5_2:74132209-74132228 None:intergenic 30.0%
AATTAGATGGTTCATGAAGT+AGG - chr5_2:74132461-74132480 None:intergenic 30.0%
ATATCCTTAACTATAGAGGT+GGG - chr5_2:74132537-74132556 None:intergenic 30.0%
AATATCCTTAACTATAGAGG+TGG - chr5_2:74132538-74132557 None:intergenic 30.0%
ACCTCTATAGTTAAGGATAT+TGG + chr5_2:74132537-74132556 Msa0787930:intron 30.0%
TCCAATATCCTTAACTATAG+AGG - chr5_2:74132541-74132560 None:intergenic 30.0%
TTCATCCTTAGACTGTTAAA+AGG + chr5_2:74132564-74132583 Msa0787930:intron 30.0%
! TGTTTTACTATGTAATTCGC+AGG + chr5_2:74132653-74132672 Msa0787930:intron 30.0%
CAGCTGTGATTAAGAAAAAA+AGG + chr5_2:74132676-74132695 Msa0787930:CDS 30.0%
AAACCAAATATTGTTACTGC+AGG + chr5_2:74132823-74132842 Msa0787930:intron 30.0%
TTTCCTGCAGTAACAATATT+TGG - chr5_2:74132829-74132848 None:intergenic 30.0%
AATATTGTTACTGCAGGAAA+AGG + chr5_2:74132829-74132848 Msa0787930:intron 30.0%
ATACAACAAATGTGTCAACA+GGG - chr5_2:74132974-74132993 None:intergenic 30.0%
! ATTTTTGTAACATTACAGGC+TGG + chr5_2:74133094-74133113 Msa0787930:intron 30.0%
AACGGCATAATAAATTGCTA+AGG - chr5_2:74133141-74133160 None:intergenic 30.0%
CGTTGTCTATAATGAATTAG+AGG + chr5_2:74133157-74133176 Msa0787930:intron 30.0%
GAGGAAAAAGTTGAAAAGAA+AGG - chr5_2:74133755-74133774 None:intergenic 30.0%
ACAGAATAAAGTAACACACT+AGG - chr5_2:74133781-74133800 None:intergenic 30.0%
CCTTTAGTTGACTGAAAATA+GGG - chr5_2:74133856-74133875 None:intergenic 30.0%
TCCTTTAGTTGACTGAAAAT+AGG - chr5_2:74133857-74133876 None:intergenic 30.0%
!! TATGGTATATTTTTCAGCGT+CGG + chr5_2:74134047-74134066 Msa0787930:intron 30.0%
GGAAAAGGTTGAAAAGAAAA+GGG - chr5_2:74134218-74134237 None:intergenic 30.0%
AGAATAAAATAACACACCAG+GGG - chr5_2:74134239-74134258 None:intergenic 30.0%
CAGAATAAAATAACACACCA+GGG - chr5_2:74134240-74134259 None:intergenic 30.0%
AAAAAACAATGTATCGCTTC+TGG - chr5_2:74134457-74134476 None:intergenic 30.0%
!! ATTTGGCTTTCTAACCTTTA+TGG + chr5_2:74134512-74134531 Msa0787930:intron 30.0%
! CTCTGAAAAATGTACCATAA+AGG - chr5_2:74134529-74134548 None:intergenic 30.0%
!! TATGGTACATTTTTCAGAGT+CGG + chr5_2:74134530-74134549 Msa0787930:intron 30.0%
GGGAAAAGTTTGAAAAGAAA+AGG - chr5_2:74134696-74134715 None:intergenic 30.0%
!! TAGGGTATATTTTTCAGAGT+CGG + chr5_2:74134988-74135007 Msa0787930:intron 30.0%
!! TTTAGCTTTACTTTGTGCAA+CGG - chr5_2:74135246-74135265 None:intergenic 30.0%
ATATGAACTACCTCTTACAA+TGG - chr5_2:74135664-74135683 None:intergenic 30.0%
TACATAAGAGGAAGAAGTTA+AGG - chr5_2:74135947-74135966 None:intergenic 30.0%
!!! CTGTTTTTTTCCAGAAGAAA+AGG + chr5_2:74135984-74136003 Msa0787930:intron 30.0%
ATTCCTTCATCAATAACTAG+TGG + chr5_2:74136138-74136157 Msa0787930:intron 30.0%
ATTCCACTAGTTATTGATGA+AGG - chr5_2:74136144-74136163 None:intergenic 30.0%
AACTTAAACCAAGGACAAAA+AGG - chr5_2:74136356-74136375 None:intergenic 30.0%
! ACAAATGAGTGCAACTTTTA+TGG + chr5_2:74136413-74136432 Msa0787930:intron 30.0%
!! CTGAGAATTTTGAAGATAGA+AGG + chr5_2:74136468-74136487 Msa0787930:intron 30.0%
!! TTGACTAGTTATGCATTTTG+GGG + chr5_2:74136754-74136773 Msa0787930:three_prime_UTR 30.0%
CTTGTAAATCTTAACATCCA+TGG + chr5_2:74136805-74136824 Msa0787930:three_prime_UTR 30.0%
CTTAACATCCATGGAATTTA+TGG + chr5_2:74136814-74136833 Msa0787930:three_prime_UTR 30.0%
TAACATCCATGGAATTTATG+GGG + chr5_2:74136816-74136835 Msa0787930:three_prime_UTR 30.0%
! TTTTCAACTTGTCATGGCAT+TGG + chr5_2:74130372-74130391 Msa0787930:five_prime_UTR 35.0%
! GTCATGGCATTGGATATATT+TGG + chr5_2:74130382-74130401 Msa0787930:five_prime_UTR 35.0%
ATTTCAGTTGGGATAGCAAT+TGG + chr5_2:74130407-74130426 Msa0787930:five_prime_UTR 35.0%
ATTGTGAAATGGTGACTATG+GGG - chr5_2:74130531-74130550 None:intergenic 35.0%
! TGTGACCTTCAATAAGCTTT+TGG - chr5_2:74130686-74130705 None:intergenic 35.0%
ATGTTATCTAAGCACTTCAC+TGG - chr5_2:74130817-74130836 None:intergenic 35.0%
! GTGAAGTGCTTAGATAACAT+TGG + chr5_2:74130817-74130836 Msa0787930:five_prime_UTR 35.0%
!!! GTTTTGGAAGCTGTATTAAC+TGG - chr5_2:74130859-74130878 None:intergenic 35.0%
! TCAAAGATTTTTCCTCCCTT+AGG - chr5_2:74130940-74130959 None:intergenic 35.0%
TAAGGGAGGAAAAATCTTTG+AGG + chr5_2:74130939-74130958 Msa0787930:five_prime_UTR 35.0%
TGCTGTCAAAGATTTGAAAG+AGG + chr5_2:74130966-74130985 Msa0787930:five_prime_UTR 35.0%
GTCAAAGATTTGAAAGAGGA+TGG + chr5_2:74130970-74130989 Msa0787930:five_prime_UTR 35.0%
AGAGGATGGTATAAAAGCAA+TGG + chr5_2:74130984-74131003 Msa0787930:five_prime_UTR 35.0%
AGGATGAGAAAGTTGTTGAA+GGG + chr5_2:74131121-74131140 Msa0787930:five_prime_UTR 35.0%
TGAAGGAGAAGAACTAAAAG+AGG + chr5_2:74131173-74131192 Msa0787930:five_prime_UTR 35.0%
AGGATAAGAAAGACGATGTA+GGG + chr5_2:74131193-74131212 Msa0787930:five_prime_UTR 35.0%
AGGAGAAGAAAGCTGATAAA+GGG + chr5_2:74131373-74131392 Msa0787930:five_prime_UTR 35.0%
AGGAGAAGAAAGCTGATAAA+GGG + chr5_2:74131373-74131392 Msa0787930:five_prime_UTR 35.0%
TAAAGGGGAAGAATTAAAGG+AGG + chr5_2:74131425-74131444 Msa0787930:five_prime_UTR 35.0%
TATCCTTGAAAGCAAAGATG+AGG + chr5_2:74131608-74131627 Msa0787930:five_prime_UTR 35.0%
ATCCTTGAAAGCAAAGATGA+GGG + chr5_2:74131609-74131628 Msa0787930:five_prime_UTR 35.0%
GAAAAATCAAGAAGACAGAG+AGG + chr5_2:74131644-74131663 Msa0787930:five_prime_UTR 35.0%
GAAAAAAAGCAGGAAAGGAA+AGG + chr5_2:74131728-74131747 Msa0787930:five_prime_UTR 35.0%
! CTTTTCAATGCTCTCATCTT+TGG - chr5_2:74131817-74131836 None:intergenic 35.0%
!! CAAAGATGAGAGCATTGAAA+AGG + chr5_2:74131815-74131834 Msa0787930:five_prime_UTR 35.0%
!! GAGAAAGTATTGAAAAAGGG+TGG + chr5_2:74131912-74131931 Msa0787930:five_prime_UTR 35.0%
GAAGGCGAAAAAGAAAATGA+AGG + chr5_2:74131950-74131969 Msa0787930:five_prime_UTR 35.0%
! CCATTGGGTATGTTTTCTAA+AGG - chr5_2:74132194-74132213 None:intergenic 35.0%
! CCTTTAGAAAACATACCCAA+TGG + chr5_2:74132191-74132210 Msa0787930:five_prime_UTR 35.0%
CAAATGGAACACTATACCAT+TGG - chr5_2:74132210-74132229 None:intergenic 35.0%
AGAAGCAGAAACACGTATAT+AGG - chr5_2:74132307-74132326 None:intergenic 35.0%
TACAAAAGAGGATTGTATGG+AGG - chr5_2:74132421-74132440 None:intergenic 35.0%
! TCCATACAATCCTCTTTTGT+AGG + chr5_2:74132420-74132439 Msa0787930:CDS 35.0%
TCCTACAAAAGAGGATTGTA+TGG - chr5_2:74132424-74132443 None:intergenic 35.0%
TATCCTTAACTATAGAGGTG+GGG - chr5_2:74132536-74132555 None:intergenic 35.0%
! GGTAACCTTTTAACAGTCTA+AGG - chr5_2:74132572-74132591 None:intergenic 35.0%
!!! AAAGGTTTTCTGGTTTTGTG+TGG + chr5_2:74132694-74132713 Msa0787930:CDS 35.0%
! TTTTGTGTGGCATGAAAATG+AGG + chr5_2:74132707-74132726 Msa0787930:CDS 35.0%
! TATGTTTGTAACTTGCAACC+AGG + chr5_2:74132730-74132749 Msa0787930:intron 35.0%
ATGTAACAAAGAGAAGTTGC+TGG + chr5_2:74132883-74132902 Msa0787930:CDS 35.0%
CAAATACAAGGAAGGTTTGT+TGG + chr5_2:74132942-74132961 Msa0787930:intron 35.0%
CATACAACAAATGTGTCAAC+AGG - chr5_2:74132975-74132994 None:intergenic 35.0%
!! CTGTTGACACATTTGTTGTA+TGG + chr5_2:74132973-74132992 Msa0787930:intron 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr5_2:74133255-74133274 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr5_2:74133254-74133273 Msa0787930:intron 35.0%
ACGACACGAGTATAATATTC+TGG - chr5_2:74133514-74133533 None:intergenic 35.0%
!! AGTCAACAAAAAAGGCATCA+AGG - chr5_2:74133578-74133597 None:intergenic 35.0%
ATCACTTGCAGAACAAGAAA+AGG + chr5_2:74133716-74133735 Msa0787930:CDS 35.0%
AAAGTAACACACTAGGTTAG+AGG - chr5_2:74133774-74133793 None:intergenic 35.0%
! CCCTATTTTCAGTCAACTAA+AGG + chr5_2:74133853-74133872 Msa0787930:intron 35.0%
TGACAAATCTGAAGACGAAA+AGG + chr5_2:74134180-74134199 Msa0787930:CDS 35.0%
GGGAAAAGGTTGAAAAGAAA+AGG - chr5_2:74134219-74134238 None:intergenic 35.0%
GCAGAATAAAATAACACACC+AGG - chr5_2:74134241-74134260 None:intergenic 35.0%
! TCCTTTTATCAGTCGAGTAA+AGG + chr5_2:74134313-74134332 Msa0787930:intron 35.0%
TCCTTTACTCGACTGATAAA+AGG - chr5_2:74134317-74134336 None:intergenic 35.0%
AAACAAGGTTCATCAAGATC+TGG + chr5_2:74134358-74134377 Msa0787930:CDS 35.0%
AAACAAAGTTCATCGAGATC+TGG + chr5_2:74134835-74134854 Msa0787930:CDS 35.0%
!! GTATATTTTTCAGAGTCGGA+AGG + chr5_2:74134992-74135011 Msa0787930:intron 35.0%
GAGAAAAGGATTTACTGACA+CGG + chr5_2:74135043-74135062 Msa0787930:CDS 35.0%
ATGAGAAGAAAGTGAGTGAA+AGG + chr5_2:74135192-74135211 Msa0787930:intron 35.0%
TTCTTCCTTGAAAAGACCTT+GGG - chr5_2:74135371-74135390 None:intergenic 35.0%
GTATATACCTGCTTTGTCTT+TGG - chr5_2:74135447-74135466 None:intergenic 35.0%
ACTAATCACTAGAATGCGAA+AGG - chr5_2:74135864-74135883 None:intergenic 35.0%
GAGGAAGAAGTTAAGGTAAT+GGG - chr5_2:74135940-74135959 None:intergenic 35.0%
AGAGGAAGAAGTTAAGGTAA+TGG - chr5_2:74135941-74135960 None:intergenic 35.0%
ATAAATTATGCCTCTAGCGA+AGG + chr5_2:74136228-74136247 Msa0787930:intron 35.0%
AGTTGCACTCATTTGTAATC+TGG - chr5_2:74136409-74136428 None:intergenic 35.0%
AAAATTGCTGACCATTGTTC+AGG + chr5_2:74136555-74136574 Msa0787930:intron 35.0%
TCTTTACAGATGCCTTTCTT+GGG - chr5_2:74136605-74136624 None:intergenic 35.0%
GATTGCTTGGAGATATACAT+AGG + chr5_2:74136720-74136739 Msa0787930:three_prime_UTR 35.0%
TTTGTTCCCCATAAATTCCA+TGG - chr5_2:74136825-74136844 None:intergenic 35.0%
CCACAAAAAAATGAACCTAC+TGG - chr5_2:74136848-74136867 None:intergenic 35.0%
!!! CCAGTAGGTTCATTTTTTTG+TGG + chr5_2:74136845-74136864 Msa0787930:three_prime_UTR 35.0%
!!! GTAGGTTCATTTTTTTGTGG+TGG + chr5_2:74136848-74136867 Msa0787930:three_prime_UTR 35.0%
GCATGAAACTGCATAATTAC+TGG - chr5_2:74136888-74136907 None:intergenic 35.0%
! ATGTAAAGAAGCTTTTGTGG+AGG + chr5_2:74136925-74136944 Msa0787930:three_prime_UTR 35.0%
CATCACTGTTTCAAACAGGT+TGG - chr5_2:74130451-74130470 None:intergenic 40.0%
TTGTGAAATGGTGACTATGG+GGG - chr5_2:74130530-74130549 None:intergenic 40.0%
AGATAACATTGGCATGAGTG+AGG + chr5_2:74130828-74130847 Msa0787930:five_prime_UTR 40.0%
! TCTTTTCACTCGAGTCTTCT+AGG - chr5_2:74130906-74130925 None:intergenic 40.0%
AGAAGACTCGAGTGAAAAGA+AGG + chr5_2:74130906-74130925 Msa0787930:five_prime_UTR 40.0%
! ATTTTTCCTCCCTTAGGTTC+CGG - chr5_2:74130934-74130953 None:intergenic 40.0%
ATGGATAAGCAAGCTGATGA+TGG + chr5_2:74131045-74131064 Msa0787930:five_prime_UTR 40.0%
AACAATAACAAAACCGGGGA+TGG + chr5_2:74131084-74131103 Msa0787930:five_prime_UTR 40.0%
ACAATAACAAAACCGGGGAT+GGG + chr5_2:74131085-74131104 Msa0787930:five_prime_UTR 40.0%
GAGGATGAGAAAGTTGTTGA+AGG + chr5_2:74131120-74131139 Msa0787930:five_prime_UTR 40.0%
GAGGATAAGAAAGACGATGT+AGG + chr5_2:74131192-74131211 Msa0787930:five_prime_UTR 40.0%
GGATAAGAAAGACGATGTAG+GGG + chr5_2:74131194-74131213 Msa0787930:five_prime_UTR 40.0%
TGTAGGGGAAGAAAGAAAAG+AGG + chr5_2:74131209-74131228 Msa0787930:five_prime_UTR 40.0%
!! GAAAGTTGATGTTAGGCAAG+AGG + chr5_2:74131236-74131255 Msa0787930:five_prime_UTR 40.0%
TGTTAGGCAAGAGGTAAAAG+AGG + chr5_2:74131245-74131264 Msa0787930:five_prime_UTR 40.0%
TGAAAGGGGAGAGATAAAAG+AGG + chr5_2:74131281-74131300 Msa0787930:five_prime_UTR 40.0%
GAAAGGGGAGAGATAAAAGA+GGG + chr5_2:74131282-74131301 Msa0787930:five_prime_UTR 40.0%
AAAGGGGAGAGATAAAAGAG+GGG + chr5_2:74131283-74131302 Msa0787930:five_prime_UTR 40.0%
AGGATAAGAAAGACGATGCA+GGG + chr5_2:74131337-74131356 Msa0787930:five_prime_UTR 40.0%
TGCAGGGGTAGAATTAAAAG+AGG + chr5_2:74131353-74131372 Msa0787930:five_prime_UTR 40.0%
GAGGAGAAGAAAGCTGATAA+AGG + chr5_2:74131372-74131391 Msa0787930:five_prime_UTR 40.0%
GGAGAAGAAAGCTGATAAAG+GGG + chr5_2:74131374-74131393 Msa0787930:five_prime_UTR 40.0%
GAGGAGAAGAAAGCTGATAA+AGG + chr5_2:74131372-74131391 Msa0787930:five_prime_UTR 40.0%
GGAGAAGAAAGCTGATAAAG+GGG + chr5_2:74131374-74131393 Msa0787930:five_prime_UTR 40.0%
TGGGAATGACAAATTCAGTG+AGG + chr5_2:74131509-74131528 Msa0787930:five_prime_UTR 40.0%
TCATCCATGGCATCTAATTC+AGG - chr5_2:74131582-74131601 None:intergenic 40.0%
AAGGATACTCTCTTCATCCA+TGG - chr5_2:74131595-74131614 None:intergenic 40.0%
AGAAGACAGAGAGGATGATA+AGG + chr5_2:74131653-74131672 Msa0787930:five_prime_UTR 40.0%
CAGAGAGGATGATAAGGATA+AGG + chr5_2:74131659-74131678 Msa0787930:five_prime_UTR 40.0%
GAAGGAACTGAAGAAGATAG+AGG + chr5_2:74131779-74131798 Msa0787930:five_prime_UTR 40.0%
AAAGGAGAAAAGTCGAGATG+AGG + chr5_2:74131833-74131852 Msa0787930:five_prime_UTR 40.0%
GAAAATGAAGGAACTGAAGG+AGG + chr5_2:74131962-74131981 Msa0787930:five_prime_UTR 40.0%
ATTTCCTTTCACGTACAGGA+CGG - chr5_2:74132013-74132032 None:intergenic 40.0%
! ACTGATTTCCTTTCACGTAC+AGG - chr5_2:74132017-74132036 None:intergenic 40.0%
GTGAAAGGAAATCAGTTCAG+CGG + chr5_2:74132021-74132040 Msa0787930:five_prime_UTR 40.0%
! TCTTGCGTTTTATGCTTCAG+TGG + chr5_2:74132352-74132371 Msa0787930:CDS 40.0%
! ACAATCCTCTTTTGTAGGAG+AGG + chr5_2:74132425-74132444 Msa0787930:CDS 40.0%
CTTGTATTTGCATTCCCAAC+TGG - chr5_2:74132932-74132951 None:intergenic 40.0%
CAGTTGGGAATGCAAATACA+AGG + chr5_2:74132930-74132949 Msa0787930:CDS 40.0%
TGGGAATGCAAATACAAGGA+AGG + chr5_2:74132934-74132953 Msa0787930:CDS 40.0%
ATGAATTAGAGGGGTAACCT+TGG + chr5_2:74133168-74133187 Msa0787930:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG + chr5_2:74133204-74133223 Msa0787930:intron 40.0%
!! TTACACAAGAGGCTGTTTCT+AGG - chr5_2:74133244-74133263 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + chr5_2:74133248-74133267 Msa0787930:intron 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + chr5_2:74133249-74133268 Msa0787930:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr5_2:74133280-74133299 Msa0787930:intron 40.0%
TAGACAAAAAAAGGGCAACC+CGG - chr5_2:74133378-74133397 None:intergenic 40.0%
TGCGAAGCTAATAGACTTTC+TGG + chr5_2:74133668-74133687 Msa0787930:CDS 40.0%
!! GATACACTTGTTGTGACTTG+AGG - chr5_2:74133699-74133718 None:intergenic 40.0%
AAACAGCGCATAGCAAAACA+AGG + chr5_2:74133877-74133896 Msa0787930:CDS 40.0%
ATAGCAAAACAAGGCTCAAC+AGG + chr5_2:74133886-74133905 Msa0787930:CDS 40.0%
TCTGCTAAGGTGAGATTTCA+TGG + chr5_2:74133934-74133953 Msa0787930:intron 40.0%
! TTCTTTTCAACCTTTTCCCC+TGG + chr5_2:74134220-74134239 Msa0787930:intron 40.0%
AAATAACACACCAGGGGAAA+AGG - chr5_2:74134233-74134252 None:intergenic 40.0%
TAACTTGAGACGAGTGTTTC+TGG + chr5_2:74134263-74134282 Msa0787930:intron 40.0%
ATCATCAAGACGTTCTGCTA+AGG + chr5_2:74134387-74134406 Msa0787930:CDS 40.0%
TGAAGATTCTTACGTAGCAG+AGG + chr5_2:74135019-74135038 Msa0787930:CDS 40.0%
CACTGTTCTTGACAAATCCA+AGG + chr5_2:74135121-74135140 Msa0787930:CDS 40.0%
CAAATCCAAGGATGAAAAGC+CGG + chr5_2:74135133-74135152 Msa0787930:CDS 40.0%
! TGCAACGGATTCTTTCTTTC+TGG - chr5_2:74135231-74135250 None:intergenic 40.0%
AGTTAAAGCAAAACCACGCT+CGG + chr5_2:74135274-74135293 Msa0787930:CDS 40.0%
! TCTGATCATGGTGATAGTGA+TGG + chr5_2:74135341-74135360 Msa0787930:CDS 40.0%
CTTCTTCCTTGAAAAGACCT+TGG - chr5_2:74135372-74135391 None:intergenic 40.0%
! TTTGTCTTTGGAGGAAGACT+TGG - chr5_2:74135435-74135454 None:intergenic 40.0%
TATACCTGCTTTGTCTTTGG+AGG - chr5_2:74135444-74135463 None:intergenic 40.0%
AGGGAATAATCTATTTGGGC+TGG - chr5_2:74135798-74135817 None:intergenic 40.0%
! CTTTCGGTAACCTTTTCTTC+TGG - chr5_2:74135997-74136016 None:intergenic 40.0%
TTGCGTAACTGATCATCACT+CGG - chr5_2:74136048-74136067 None:intergenic 40.0%
ACCGAGTAGCTTCAAAATGT+CGG - chr5_2:74136312-74136331 None:intergenic 40.0%
CGAATTGCTTACCTGAACAA+TGG - chr5_2:74136569-74136588 None:intergenic 40.0%
CTTTACAGATGCCTTTCTTG+GGG - chr5_2:74136604-74136623 None:intergenic 40.0%
GTCTTTACAGATGCCTTTCT+TGG - chr5_2:74136606-74136625 None:intergenic 40.0%
GACTATTATTCAGCAAGAGC+TGG + chr5_2:74136623-74136642 Msa0787930:CDS 40.0%
AAGCAATCACACCTAATCCT+CGG - chr5_2:74136708-74136727 None:intergenic 40.0%
TTTATGGGGAACAAACCAGT+AGG + chr5_2:74136830-74136849 Msa0787930:three_prime_UTR 40.0%
TTTCACTCGAGTCTTCTAGG+TGG - chr5_2:74130903-74130922 None:intergenic 45.0%
! TTTTTCCTCCCTTAGGTTCC+GGG - chr5_2:74130933-74130952 None:intergenic 45.0%
TGATAAGAAAGCTGATGGGG+AGG + chr5_2:74131011-74131030 Msa0787930:five_prime_UTR 45.0%
TGGGGAGGAAGAACTAGAAA+TGG + chr5_2:74131026-74131045 Msa0787930:five_prime_UTR 45.0%
CAATAACAAAACCGGGGATG+GGG + chr5_2:74131086-74131105 Msa0787930:five_prime_UTR 45.0%
! TTTTATTCCTTCCCCATCCC+CGG - chr5_2:74131100-74131119 None:intergenic 45.0%
GGATGGGGAAGGAATAAAAG+AGG + chr5_2:74131101-74131120 Msa0787930:five_prime_UTR 45.0%
AGGGGAAGAAAGCTGATGAA+GGG + chr5_2:74131301-74131320 Msa0787930:five_prime_UTR 45.0%
GAGGATAAGAAAGACGATGC+AGG + chr5_2:74131336-74131355 Msa0787930:five_prime_UTR 45.0%
GGATAAGAAAGACGATGCAG+GGG + chr5_2:74131338-74131357 Msa0787930:five_prime_UTR 45.0%
GAAGCCTGAATTAGATGCCA+TGG + chr5_2:74131575-74131594 Msa0787930:five_prime_UTR 45.0%
TGCCCTCATCTTTGCTTTCA+AGG - chr5_2:74131614-74131633 None:intergenic 45.0%
CAAAGATGAGGGCAGTGAAA+AGG + chr5_2:74131620-74131639 Msa0787930:five_prime_UTR 45.0%
AGCAGGAAAGGAAAGGTTGA+TGG + chr5_2:74131735-74131754 Msa0787930:five_prime_UTR 45.0%
! GCAGGAAAGGAAAGGTTGAT+GGG + chr5_2:74131736-74131755 Msa0787930:five_prime_UTR 45.0%
!! CAGGAAAGGAAAGGTTGATG+GGG + chr5_2:74131737-74131756 Msa0787930:five_prime_UTR 45.0%
! TGCTCTCATCTTTGGCTTCA+GGG - chr5_2:74131809-74131828 None:intergenic 45.0%
! ATGCTCTCATCTTTGGCTTC+AGG - chr5_2:74131810-74131829 None:intergenic 45.0%
AAAAGTCGAGATGAGGAGGT+GGG + chr5_2:74131840-74131859 Msa0787930:five_prime_UTR 45.0%
GTATTGAAAAAGGGTGGGAG+AGG + chr5_2:74131918-74131937 Msa0787930:five_prime_UTR 45.0%
AAGGAAATCAGTTCAGCGGT+TGG + chr5_2:74132025-74132044 Msa0787930:five_prime_UTR 45.0%
CCTTTCCTCTCCTACAAAAG+AGG - chr5_2:74132433-74132452 None:intergenic 45.0%
! CCTCTTTTGTAGGAGAGGAA+AGG + chr5_2:74132430-74132449 Msa0787930:CDS 45.0%
TCACCCCACCTCTATAGTTA+AGG + chr5_2:74132530-74132549 Msa0787930:intron 45.0%
ATCTGCTTGACGTACCAGTT+GGG + chr5_2:74132915-74132934 Msa0787930:CDS 45.0%
!! ACATTTGTTGTATGGCAGCC+TGG + chr5_2:74132981-74133000 Msa0787930:intron 45.0%
CGACTATTATCAGCATTGCC+AGG - chr5_2:74133002-74133021 None:intergenic 45.0%
CGTATTCATGCTGTACGCTT+TGG + chr5_2:74133020-74133039 Msa0787930:intron 45.0%
GTCATGTGACTGAAAGGTCA+CGG + chr5_2:74133210-74133229 Msa0787930:intron 45.0%
TCATGTGACTGAAAGGTCAC+GGG + chr5_2:74133211-74133230 Msa0787930:intron 45.0%
GCTGCGTACAATACACCAAA+TGG + chr5_2:74133276-74133295 Msa0787930:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr5_2:74133279-74133298 Msa0787930:intron 45.0%
TGAGTACGATGCATCTGTCA+AGG + chr5_2:74133537-74133556 Msa0787930:intron 45.0%
!! AAAGGCATCAAGGACTGCAT+TGG - chr5_2:74133568-74133587 None:intergenic 45.0%
CTACTCAAGACGAGTGTATC+TGG + chr5_2:74133803-74133822 Msa0787930:intron 45.0%
AAACAAGGCTCAACAGGATC+TGG + chr5_2:74133892-74133911 Msa0787930:CDS 45.0%
TTAGCAGATCGTCTTGACGT+TGG - chr5_2:74133922-74133941 None:intergenic 45.0%
AACGTCAAGACGATCTGCTA+AGG + chr5_2:74133921-74133940 Msa0787930:CDS 45.0%
TTACTTGAGACGAGCGTTTC+TGG + chr5_2:74134740-74134759 Msa0787930:intron 45.0%
TACGTAGCAGAGGAGAGAAA+AGG + chr5_2:74135029-74135048 Msa0787930:CDS 45.0%
TGAGTCTGAGGAAGAACAGA+AGG + chr5_2:74135070-74135089 Msa0787930:CDS 45.0%
! TTTCTCCGGCTTTTCATCCT+TGG - chr5_2:74135141-74135160 None:intergenic 45.0%
AAGCCGGAGAAATCTGAAAG+TGG + chr5_2:74135149-74135168 Msa0787930:CDS 45.0%
AGCCGGAGAAATCTGAAAGT+GGG + chr5_2:74135150-74135169 Msa0787930:CDS 45.0%
TCCCCACTTTCAGATTTCTC+CGG - chr5_2:74135155-74135174 None:intergenic 45.0%
TGGGTCGACAATGGTTTCTT+GGG - chr5_2:74135314-74135333 None:intergenic 45.0%
ACCATGATCAGATGCAGAGT+GGG - chr5_2:74135333-74135352 None:intergenic 45.0%
! TGATAGTGATGGAAGTCCCA+AGG + chr5_2:74135352-74135371 Msa0787930:CDS 45.0%
! GAAGTCCCAAGGTCTTTTCA+AGG + chr5_2:74135363-74135382 Msa0787930:CDS 45.0%
TCTTCCTCCAAAGACAAAGC+AGG + chr5_2:74135437-74135456 Msa0787930:CDS 45.0%
TGCGTAACTGATCATCACTC+GGG - chr5_2:74136047-74136066 None:intergenic 45.0%
CAACAGAAAACCTTCGCTAG+AGG - chr5_2:74136241-74136260 None:intergenic 45.0%
!! ACATTTTCTCCCGCTTTTGC+AGG + chr5_2:74136277-74136296 Msa0787930:intron 45.0%
CAAATGTAGCCTGCAAAAGC+GGG - chr5_2:74136289-74136308 None:intergenic 45.0%
GCAAATGTAGCCTGCAAAAG+CGG - chr5_2:74136290-74136309 None:intergenic 45.0%
!!! GCCGACATTTTGAAGCTACT+CGG + chr5_2:74136308-74136327 Msa0787930:CDS 45.0%
TTCAGGTAAGCAATTCGACG+TGG + chr5_2:74136572-74136591 Msa0787930:intron 45.0%
AAGAGAACGAAGAGAACGAC+AGG + chr5_2:74136671-74136690 Msa0787930:CDS 45.0%
AGAGAACGAAGAGAACGACA+GGG + chr5_2:74136672-74136691 Msa0787930:CDS 45.0%
GAGGATTAGGTGTGATTGCT+TGG + chr5_2:74136707-74136726 Msa0787930:three_prime_UTR 45.0%
! GAAGCTTTTGTGGAGGCTTT+TGG + chr5_2:74136932-74136951 Msa0787930:three_prime_UTR 45.0%
CTCGAGTGAAAAGAAGGACC+CGG + chr5_2:74130912-74130931 Msa0787930:five_prime_UTR 50.0%
AAAGAAGGACCCGGAACCTA+AGG + chr5_2:74130921-74130940 Msa0787930:five_prime_UTR 50.0%
AAGAAGGACCCGGAACCTAA+GGG + chr5_2:74130922-74130941 Msa0787930:five_prime_UTR 50.0%
GAGGACAAGCATGCTGATGA+AGG + chr5_2:74131156-74131175 Msa0787930:five_prime_UTR 50.0%
GAGGGGAAGAAAGCTGATGA+AGG + chr5_2:74131300-74131319 Msa0787930:five_prime_UTR 50.0%
GGGGAAGAAAGCTGATGAAG+GGG + chr5_2:74131302-74131321 Msa0787930:five_prime_UTR 50.0%
GGAGAAAAGTCGAGATGAGG+AGG + chr5_2:74131836-74131855 Msa0787930:five_prime_UTR 50.0%
GAAAAGTCGAGATGAGGAGG+TGG + chr5_2:74131839-74131858 Msa0787930:five_prime_UTR 50.0%
AAAGGGTGGGAGAGGAAATG+TGG + chr5_2:74131926-74131945 Msa0787930:five_prime_UTR 50.0%
TGGGAGAGGAAATGTGGAGA+AGG + chr5_2:74131932-74131951 Msa0787930:five_prime_UTR 50.0%
! CGGTTGGTTGTAGGAGTTGT+TGG - chr5_2:74131993-74132012 None:intergenic 50.0%
TCTTTCACTTTGCAGGGTCG+TGG + chr5_2:74132164-74132183 Msa0787930:intron 50.0%
GATCTGCTTGACGTACCAGT+TGG + chr5_2:74132914-74132933 Msa0787930:CDS 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr5_2:74133188-74133207 None:intergenic 50.0%
! GGAAAAAAGCGCAAGCGCAT+AGG + chr5_2:74134334-74134353 Msa0787930:CDS 50.0%
CGCAAGCGCATAGGAAAACA+AGG + chr5_2:74134343-74134362 Msa0787930:CDS 50.0%
CTTAGCAGAACGTCTTGACG+TGG - chr5_2:74134866-74134885 None:intergenic 50.0%
CACGTCAAGACGTTCTGCTA+AGG + chr5_2:74134864-74134883 Msa0787930:CDS 50.0%
TGACACGGAAGATGAGTCTG+AGG + chr5_2:74135058-74135077 Msa0787930:CDS 50.0%
GCCGGAGAAATCTGAAAGTG+GGG + chr5_2:74135151-74135170 Msa0787930:CDS 50.0%
GTGGGTCGACAATGGTTTCT+TGG - chr5_2:74135315-74135334 None:intergenic 50.0%
ACCCACTCTGCATCTGATCA+TGG + chr5_2:74135329-74135348 Msa0787930:CDS 50.0%
CACCATGATCAGATGCAGAG+TGG - chr5_2:74135334-74135353 None:intergenic 50.0%
!! GGAAGACTTGGTGAGAGTTG+AGG - chr5_2:74135423-74135442 None:intergenic 50.0%
GTAATGCCTGACCGAGGATT+AGG + chr5_2:74136694-74136713 Msa0787930:exon 50.0%
ATCACACCTAATCCTCGGTC+AGG - chr5_2:74136703-74136722 None:intergenic 50.0%
AACAAAACCGGGGATGGGGA+AGG + chr5_2:74131090-74131109 Msa0787930:five_prime_UTR 55.0%
AGATGAGGAGGTGGGCGATA+AGG + chr5_2:74131848-74131867 Msa0787930:five_prime_UTR 55.0%
GGAGGTGGGCGATAAGGATA+AGG + chr5_2:74131854-74131873 Msa0787930:five_prime_UTR 55.0%
! CGTACAGGACGGTTGGTTGT+AGG - chr5_2:74132002-74132021 None:intergenic 55.0%
CCTTTCACGTACAGGACGGT+TGG - chr5_2:74132009-74132028 None:intergenic 55.0%
CCAACCGTCCTGTACGTGAA+AGG + chr5_2:74132006-74132025 Msa0787930:five_prime_UTR 55.0%
CCAAAGCTCCCGCATATGCA+GGG - chr5_2:74133351-74133370 None:intergenic 55.0%
ACCAAAGCTCCCGCATATGC+AGG - chr5_2:74133352-74133371 None:intergenic 55.0%
AAAACCACGCTCGGCACGAA+AGG + chr5_2:74135283-74135302 Msa0787930:CDS 55.0%
AAACCACGCTCGGCACGAAA+GGG + chr5_2:74135284-74135303 Msa0787930:CDS 55.0%
GATGCAGAGTGGGTCGACAA+TGG - chr5_2:74135323-74135342 None:intergenic 55.0%
CGTGGATCTCACCCCAAGAA+AGG + chr5_2:74136590-74136609 Msa0787930:CDS 55.0%
AAGGACCCGGAACCTAAGGG+AGG + chr5_2:74130925-74130944 Msa0787930:five_prime_UTR 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr5_2:74133177-74133196 Msa0787930:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr5_2:74133292-74133311 Msa0787930:intron 60.0%
! TTTGGTGCAGGGTCCGGGAA+GGG - chr5_2:74133308-74133327 None:intergenic 60.0%
!! ATTTGGTGCAGGGTCCGGGA+AGG - chr5_2:74133309-74133328 None:intergenic 60.0%
TTCCCGGACCCTGCACCAAA+TGG + chr5_2:74133308-74133327 Msa0787930:intron 60.0%
!! CACCATTTGGTGCAGGGTCC+GGG - chr5_2:74133313-74133332 None:intergenic 60.0%
!! CCACCATTTGGTGCAGGGTC+CGG - chr5_2:74133314-74133333 None:intergenic 60.0%
CGGACCCTGCACCAAATGGT+GGG + chr5_2:74133312-74133331 Msa0787930:intron 60.0%
!! GGGTCCCACCATTTGGTGCA+GGG - chr5_2:74133319-74133338 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr5_2:74133292-74133311 Msa0787930:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG - chr5_2:74133339-74133358 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG - chr5_2:74133340-74133359 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG + chr5_2:74133339-74133358 Msa0787930:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG + chr5_2:74133340-74133359 Msa0787930:intron 60.0%
CCCTGCATATGCGGGAGCTT+TGG + chr5_2:74133348-74133367 Msa0787930:intron 60.0%
! ATGCGGGAGCTTTGGTGCAC+CGG + chr5_2:74133356-74133375 Msa0787930:intron 60.0%
GACAGGGTAATGCCTGACCG+AGG + chr5_2:74136688-74136707 Msa0787930:exon 60.0%
CGGGAAGGGGTCCCACCATT+TGG - chr5_2:74133294-74133313 None:intergenic 65.0%
TTGGTGCAGGGTCCGGGAAG+GGG - chr5_2:74133307-74133326 None:intergenic 65.0%
CCGGACCCTGCACCAAATGG+TGG + chr5_2:74133311-74133330 Msa0787930:intron 65.0%
!! GGGGTCCCACCATTTGGTGC+AGG - chr5_2:74133320-74133339 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr5_2:74133294-74133313 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG - chr5_2:74133341-74133360 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG - chr5_2:74133345-74133364 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG - chr5_2:74133346-74133365 None:intergenic 65.0%
! TGCGGGAGCTTTGGTGCACC+GGG + chr5_2:74133357-74133376 Msa0787930:intron 65.0%
GTTCCCTTTCGTGCCGAGCG+TGG - chr5_2:74135290-74135309 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 74130290 74137028 74130290 ID=Msa0787930;Name=Msa0787930
chr5_2 mRNA 74130290 74137028 74130290 ID=Msa0787930-mRNA-1;Parent=Msa0787930;Name=Msa0787930-mRNA-1;_AED=0.10;_eAED=0.10;_QI=1794|0.93|0.87|1|0.86|0.68|16|324|548
chr5_2 exon 74130290 74130699 74130290 ID=Msa0787930-mRNA-1:exon:22598;Parent=Msa0787930-mRNA-1
chr5_2 exon 74130789 74132094 74130789 ID=Msa0787930-mRNA-1:exon:22599;Parent=Msa0787930-mRNA-1
chr5_2 exon 74132179 74132451 74132179 ID=Msa0787930-mRNA-1:exon:22600;Parent=Msa0787930-mRNA-1
chr5_2 exon 74132675 74132728 74132675 ID=Msa0787930-mRNA-1:exon:22601;Parent=Msa0787930-mRNA-1
chr5_2 exon 74132845 74132955 74132845 ID=Msa0787930-mRNA-1:exon:22602;Parent=Msa0787930-mRNA-1
chr5_2 exon 74133657 74133737 74133657 ID=Msa0787930-mRNA-1:exon:22603;Parent=Msa0787930-mRNA-1
chr5_2 exon 74133865 74133942 74133865 ID=Msa0787930-mRNA-1:exon:22604;Parent=Msa0787930-mRNA-1
chr5_2 exon 74134064 74134201 74134064 ID=Msa0787930-mRNA-1:exon:22605;Parent=Msa0787930-mRNA-1
chr5_2 exon 74134325 74134408 74134325 ID=Msa0787930-mRNA-1:exon:22606;Parent=Msa0787930-mRNA-1
chr5_2 exon 74134547 74134678 74134547 ID=Msa0787930-mRNA-1:exon:22607;Parent=Msa0787930-mRNA-1
chr5_2 exon 74134802 74134885 74134802 ID=Msa0787930-mRNA-1:exon:22608;Parent=Msa0787930-mRNA-1
chr5_2 exon 74135005 74135202 74135005 ID=Msa0787930-mRNA-1:exon:22609;Parent=Msa0787930-mRNA-1
chr5_2 exon 74135236 74135458 74135236 ID=Msa0787930-mRNA-1:exon:22610;Parent=Msa0787930-mRNA-1
chr5_2 exon 74135998 74136107 74135998 ID=Msa0787930-mRNA-1:exon:22611;Parent=Msa0787930-mRNA-1
chr5_2 exon 74136299 74136329 74136299 ID=Msa0787930-mRNA-1:exon:22612;Parent=Msa0787930-mRNA-1
chr5_2 exon 74136577 74137028 74136577 ID=Msa0787930-mRNA-1:exon:22613;Parent=Msa0787930-mRNA-1
chr5_2 five_prime_UTR 74130290 74130699 74130290 ID=Msa0787930-mRNA-1:five_prime_utr;Parent=Msa0787930-mRNA-1
chr5_2 five_prime_UTR 74130789 74132094 74130789 ID=Msa0787930-mRNA-1:five_prime_utr;Parent=Msa0787930-mRNA-1
chr5_2 five_prime_UTR 74132179 74132256 74132179 ID=Msa0787930-mRNA-1:five_prime_utr;Parent=Msa0787930-mRNA-1
chr5_2 CDS 74132257 74132451 74132257 ID=Msa0787930-mRNA-1:cds;Parent=Msa0787930-mRNA-1
chr5_2 CDS 74132675 74132728 74132675 ID=Msa0787930-mRNA-1:cds;Parent=Msa0787930-mRNA-1
chr5_2 CDS 74132845 74132955 74132845 ID=Msa0787930-mRNA-1:cds;Parent=Msa0787930-mRNA-1
chr5_2 CDS 74133657 74133737 74133657 ID=Msa0787930-mRNA-1:cds;Parent=Msa0787930-mRNA-1
chr5_2 CDS 74133865 74133942 74133865 ID=Msa0787930-mRNA-1:cds;Parent=Msa0787930-mRNA-1
chr5_2 CDS 74134064 74134201 74134064 ID=Msa0787930-mRNA-1:cds;Parent=Msa0787930-mRNA-1
chr5_2 CDS 74134325 74134408 74134325 ID=Msa0787930-mRNA-1:cds;Parent=Msa0787930-mRNA-1
chr5_2 CDS 74134547 74134678 74134547 ID=Msa0787930-mRNA-1:cds;Parent=Msa0787930-mRNA-1
chr5_2 CDS 74134802 74134885 74134802 ID=Msa0787930-mRNA-1:cds;Parent=Msa0787930-mRNA-1
chr5_2 CDS 74135005 74135202 74135005 ID=Msa0787930-mRNA-1:cds;Parent=Msa0787930-mRNA-1
chr5_2 CDS 74135236 74135458 74135236 ID=Msa0787930-mRNA-1:cds;Parent=Msa0787930-mRNA-1
chr5_2 CDS 74135998 74136107 74135998 ID=Msa0787930-mRNA-1:cds;Parent=Msa0787930-mRNA-1
chr5_2 CDS 74136299 74136329 74136299 ID=Msa0787930-mRNA-1:cds;Parent=Msa0787930-mRNA-1
chr5_2 CDS 74136577 74136704 74136577 ID=Msa0787930-mRNA-1:cds;Parent=Msa0787930-mRNA-1
chr5_2 three_prime_UTR 74136705 74137028 74136705 ID=Msa0787930-mRNA-1:three_prime_utr;Parent=Msa0787930-mRNA-1
Gene Sequence

>Msa0787930

ATGTATTCTCTTTTATTACTTTTTCACGTCTATAATGCACTTTATATCCTATATACGTGTTTCTGCTTCTTCTTAACAGCTAATAACTTTATGACTCTTGCGTTTTATGCTTCAGTGGCATTTAAATTATCTAGAAGGAAGGTTGATGATACTCTCAAATTCCTCCATACAATCCTCTTTTGTAGGAGAGGAAAGGCAGCTGTGATTAAGAAAAAAAGGTTTTCTGGTTTTGTGTGGCATGAAAATGAGGAAAAGGAGATGATTAAAGTAAAAGAAAAATTTGACAAATGTAACAAAGAGAAGTTGCTGGAATTCTCTGATCTGCTTGACGTACCAGTTGGGAATGCAAATACAAGGAAGGAAGATATTATTGCGAAGCTAATAGACTTTCTGGTTGCTCCTCAAGTCACAACAAGTGTATCACTTGCAGAACAAGAAAAGTCAACTAAAGGAAAACAGCGCATAGCAAAACAAGGCTCAACAGGATCTGGAACACCAACGTCAAGACGATCTGCTAAGCGTCGGAAGAAAAATGAAGATTCTTCAGCAGCAGAGAAGAGAAAGACTGCAACTGACACAGAAAGTGAGTCTGAGAAAAATGAAGAAAACAAAGAGGAAAATGAAATCGATGTTTCTGACAAATCTGAAGACGAAAAGTCGAGTAAAGGAAAAAAGCGCAAGCGCATAGGAAAACAAGGTTCATCAAGATCTGGAGCAGCATCATCAAGACGTTCTGCTAAGAGTCGGAAGAAAATTGAAGATTCTTTCGTAGCTGAGAAGAGAAAGACTACAACAGATACAGAAAGTGAGTCTGAGAAAGAAGACAATAAAGAAGAAAATGAAAACGTTTCTGAAAAATCTGAAGATGAAAAGTCGATTAAAGGAAAAAAGCGCAAGCTCATAGCAAAACAAAGTTCATCGAGATCTGGAATAACCACGTCAAGACGTTCTGCTAAGAGTCGGAAGGAAAATGAAGATTCTTACGTAGCAGAGGAGAGAAAAGGATTTACTGACACGGAAGATGAGTCTGAGGAAGAACAGAAGGATGAGAAAAATGTACAAGACAATGAAAACACTGTTCTTGACAAATCCAAGGATGAAAAGCCGGAGAAATCTGAAAGTGGGGATAAAAATGATTCTGAAGATGAGAAGAAAAAAGAATCCGTTGCACAAAGTAAAGCTAAAAAAACAACAGTTAAAGCAAAACCACGCTCGGCACGAAAGGGAACTCCCAAGAAACCATTGTCGACCCACTCTGCATCTGATCATGGTGATAGTGATGGAAGTCCCAAGGTCTTTTCAAGGAAGAAGAAAAATGAAAAACAAGGAAAGCAGAAGACCTCAACTCTCACCAAGTCTTCCTCCAAAGACAAAGCAGAAGAAAAGGTTACCGAAAGAAAGATCAAGAACAAAGAGAAGTCAGACCCGAGTGATGATCAGTTACGCAAAGCAATATGTGTTATTTTTAAAAAAGTCGACTTCAATACTGCTACATTTGCCGACATTTTGAAGCTACTCGGTAAGCAATTCGACGTGGATCTCACCCCAAGAAAGGCATCTGTAAAGACTATTATTCAGCAAGAGCTGGCAAAACTTGCTGAAGAAGATGAAGAAAGAGAACGAAGAGAACGACAGGGTAATGCCTGA
Protein sequence

>Msa0787930

MYSLLLLFHVYNALYILYTCFCFFLTANNFMTLAFYASVAFKLSRRKVDDTLKFLHTILFCRRGKAAVIKKKRFSGFVWHENEEKEMIKVKEKFDKCNKEKLLEFSDLLDVPVGNANTRKEDIIAKLIDFLVAPQVTTSVSLAEQEKSTKGKQRIAKQGSTGSGTPTSRRSAKRRKKNEDSSAAEKRKTATDTESESEKNEENKEENEIDVSDKSEDEKSSKGKKRKRIGKQGSSRSGAASSRRSAKSRKKIEDSFVAEKRKTTTDTESESEKEDNKEENENVSEKSEDEKSIKGKKRKLIAKQSSSRSGITTSRRSAKSRKENEDSYVAEERKGFTDTEDESEEEQKDEKNVQDNENTVLDKSKDEKPEKSESGDKNDSEDEKKKESVAQSKAKKTTVKAKPRSARKGTPKKPLSTHSASDHGDSDGSPKVFSRKKKNEKQGKQKTSTLTKSSSKDKAEEKVTERKIKNKEKSDPSDDQLRKAICVIFKKVDFNTATFADILKLLGKQFDVDLTPRKASVKTIIQQELAKLAEEDEERERRERQGNA*