Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791150 | XP_003592221.1 | 99.242 | 396 | 2 | 1 | 1 | 395 | 1 | 396 | 0.0 | 803 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791150 | sp|Q8W586|QQT2_ARATH | 72.571 | 350 | 95 | 1 | 19 | 368 | 4 | 352 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791150 | G7IEN9 | 99.242 | 396 | 2 | 1 | 1 | 395 | 1 | 396 | 0.0 | 803 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076120 | Msa0791150 | 0.984810 | 1.179985e-161 | -8.615850e-47 |
| Msa0133410 | Msa0791150 | 0.980306 | 6.473180e-150 | -8.615850e-47 |
| Msa0181540 | Msa0791150 | 0.986029 | 1.924172e-165 | -8.615850e-47 |
| Msa0184820 | Msa0791150 | 0.982821 | 4.338041e-156 | -8.615850e-47 |
| Msa0184880 | Msa0791150 | 0.987198 | 2.121737e-169 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791150 | MtrunA17_Chr1g0202821 | 99.242 | 396 | 2 | 1 | 1 | 395 | 1 | 396 | 0.0 | 803 |
| Msa0791150 | MtrunA17_Chr3g0119231 | 29.255 | 188 | 128 | 3 | 61 | 245 | 6 | 191 | 4.38e-19 | 86.3 |
| Msa0791150 | MtrunA17_Chr8g0364001 | 30.688 | 189 | 122 | 3 | 61 | 244 | 6 | 190 | 9.52e-19 | 85.9 |
| Msa0791150 | MtrunA17_Chr5g0442031 | 39.506 | 81 | 49 | 0 | 61 | 141 | 6 | 86 | 1.44e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791150 | AT4G21800.2 | 72.571 | 350 | 95 | 1 | 19 | 368 | 4 | 352 | 0.0 | 531 |
| Msa0791150 | AT4G21800.1 | 72.571 | 350 | 95 | 1 | 19 | 368 | 4 | 352 | 0.0 | 531 |
| Msa0791150 | AT4G12790.4 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0791150 | AT4G12790.2 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0791150 | AT4G12790.6 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0791150 | AT4G12790.5 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0791150 | AT4G12790.1 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0791150 | AT4G12790.3 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0791150 | AT5G22370.2 | 27.957 | 186 | 131 | 3 | 61 | 244 | 6 | 190 | 1.60e-15 | 77.0 |
| Msa0791150 | AT5G22370.3 | 27.957 | 186 | 131 | 3 | 61 | 244 | 6 | 190 | 1.60e-15 | 77.0 |
| Msa0791150 | AT5G22370.1 | 27.957 | 186 | 131 | 3 | 61 | 244 | 6 | 190 | 1.60e-15 | 77.0 |
Find 112 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATTGAAGGTTCCTCTTC+TGG | 0.208586 | 5_3:+1999102 | Msa0791150:CDS |
| CAAAACAGATACTAGATATA+TGG | 0.237911 | 5_3:-2001967 | None:intergenic |
| TGTTGCGGAGGGTGTTGATT+AGG | 0.252127 | 5_3:-1998740 | None:intergenic |
| GCTGGAGTTTCTGCAGTTAC+TGG | 0.283127 | 5_3:+2001225 | Msa0791150:CDS |
| GATGATGATGATGTTGATTT+CGG | 0.300467 | 5_3:+2001614 | Msa0791150:CDS |
| GTTGCGGAGGGTGTTGATTA+GGG | 0.319457 | 5_3:-1998739 | None:intergenic |
| CCTGTTATCATCATTGTTGT+TGG | 0.328714 | 5_3:+1999147 | Msa0791150:CDS |
| GATAGAATGTATGAAATAAC+AGG | 0.330341 | 5_3:-2001821 | None:intergenic |
| ATGATGATGATGTTGATTTC+GGG | 0.336647 | 5_3:+2001615 | Msa0791150:CDS |
| CCAACAACAATGATGATAAC+AGG | 0.357092 | 5_3:-1999147 | None:intergenic |
| GTTTATCCATGTTCTCCTTC+CGG | 0.357858 | 5_3:-2001493 | None:intergenic |
| TATAGGACCTTGACTTCATT+TGG | 0.361838 | 5_3:+2001750 | Msa0791150:three_prime_UTR |
| ATATTCACATGGTCTGCTTC+TGG | 0.363085 | 5_3:+2000054 | Msa0791150:CDS |
| GAGTGAGTCTATGAAGAAAT+TGG | 0.370198 | 5_3:+1999080 | Msa0791150:CDS |
| GAAGTCAAAATTCCACCATT+GGG | 0.397466 | 5_3:-1999510 | None:intergenic |
| TACAGTAATTTAAGATCAGC+TGG | 0.416370 | 5_3:+2001207 | Msa0791150:CDS |
| ATCATTGTTGTTGGAATGGC+AGG | 0.426570 | 5_3:+1999156 | Msa0791150:CDS |
| GTTTCTGCAGTTACTGGTGC+TGG | 0.428710 | 5_3:+2001231 | Msa0791150:CDS |
| TTCCATGTATTCCTCTGCAC+TGG | 0.431616 | 5_3:-2001283 | None:intergenic |
| GAAATAACAGGGCAATAAAT+CGG | 0.435791 | 5_3:-2001809 | None:intergenic |
| GGATGAAGAGGATGAGGAAA+TGG | 0.438782 | 5_3:+2001592 | Msa0791150:CDS |
| ATACTCATCTGTCAAACATC+AGG | 0.441997 | 5_3:+1999376 | Msa0791150:CDS |
| TTTAACTCAGAGCCTTTCTC+TGG | 0.457020 | 5_3:+2001170 | Msa0791150:CDS |
| AAACTTAACCTCATCGAACT+TGG | 0.460043 | 5_3:-1999550 | None:intergenic |
| CTCATTTGTGTTAAGGGAGT+GGG | 0.461516 | 5_3:+1999322 | Msa0791150:intron |
| ATGAAGAAATTGGACATTGA+AGG | 0.465533 | 5_3:+1999090 | Msa0791150:CDS |
| AAAACAGATACTAGATATAT+GGG | 0.466514 | 5_3:-2001966 | None:intergenic |
| GGACGAGGATGAAGAGGATG+AGG | 0.467374 | 5_3:+2001586 | Msa0791150:CDS |
| CACACACACGCGAGCTCTCT+CGG | 0.468404 | 5_3:+1998646 | Msa0791150:five_prime_UTR |
| ACAACATGAGTTTGCCTTGG+AGG | 0.468476 | 5_3:+2000251 | Msa0791150:CDS |
| AAATTCCACCATTGGGGCCA+AGG | 0.471975 | 5_3:-1999503 | None:intergenic |
| TAGGGCTTACGGTGGTGATA+AGG | 0.472410 | 5_3:-1998721 | None:intergenic |
| AGGAGGGAGATGGAGAAATC+TGG | 0.473893 | 5_3:+2001518 | Msa0791150:CDS |
| GATCTGAACTTGCAGCTGCT+TGG | 0.481512 | 5_3:-2001131 | None:intergenic |
| GTCACCGGCTTCCATTTCCA+TGG | 0.485145 | 5_3:-1998808 | None:intergenic |
| TCACCGGCTTCCATTTCCAT+GGG | 0.489818 | 5_3:-1998807 | None:intergenic |
| ATATCAATGTTAGAAGCATA+TGG | 0.489870 | 5_3:-1999438 | None:intergenic |
| CAATTCAACCTTGGCCCCAA+TGG | 0.493147 | 5_3:+1999495 | Msa0791150:CDS |
| AGAAGTCAAAATTCCACCAT+TGG | 0.493187 | 5_3:-1999511 | None:intergenic |
| TCAGAGCCTTTCTCTGGCAC+TGG | 0.495072 | 5_3:+2001176 | Msa0791150:CDS |
| CTATCAGCATTATTCTCTCT+AGG | 0.500275 | 5_3:+2001839 | Msa0791150:three_prime_UTR |
| AGCACAACATGAGTTTGCCT+TGG | 0.507905 | 5_3:+2000248 | Msa0791150:CDS |
| AAGCATGTTGCTCATAAAAG+TGG | 0.519169 | 5_3:-2000160 | None:intergenic |
| AGGAGAACATGGATAAACTT+AGG | 0.522057 | 5_3:+2001498 | Msa0791150:CDS |
| TATGGAAGTGTCATGACAGC+CGG | 0.522098 | 5_3:-1999420 | None:intergenic |
| TCAACTTGACTATGTTCTTG+TGG | 0.522799 | 5_3:+2000011 | Msa0791150:CDS |
| ATTCATCCAGTGCCAGAGAA+AGG | 0.526358 | 5_3:-2001182 | None:intergenic |
| CGTTATCTGCGTCCATGTTG+CGG | 0.534923 | 5_3:-1998755 | None:intergenic |
| TTCAACCTTGGCCCCAATGG+TGG | 0.539374 | 5_3:+1999498 | Msa0791150:CDS |
| AGCCAGTGCAGAGGAATACA+TGG | 0.540021 | 5_3:+2001281 | Msa0791150:CDS |
| TATGTTCTTGTGGATACTCC+TGG | 0.544128 | 5_3:+2000021 | Msa0791150:CDS |
| GAAGTTAGGTGAACCAGAAG+AGG | 0.546699 | 5_3:-1999115 | None:intergenic |
| ATCGGAACTAGCGCTTGTAT+AGG | 0.552743 | 5_3:+2001733 | Msa0791150:three_prime_UTR |
| TATCATCATTGTTGTTGGAA+TGG | 0.555919 | 5_3:+1999152 | Msa0791150:CDS |
| AGAGGAGGACGAGGATGAAG+AGG | 0.556313 | 5_3:+2001580 | Msa0791150:CDS |
| TATGAACGTTTGGATTGCAT+CGG | 0.557691 | 5_3:+2001715 | Msa0791150:three_prime_UTR |
| GGATAAACTTAGGAGGGAGA+TGG | 0.557760 | 5_3:+2001508 | Msa0791150:CDS |
| GTCGTTCTCTTCTACACCAC+CGG | 0.560461 | 5_3:+1998684 | Msa0791150:five_prime_UTR |
| AGAAAGTACTTGAGAGTCAC+CGG | 0.565078 | 5_3:-1998823 | None:intergenic |
| ATCTGCGTCCATGTTGCGGA+GGG | 0.565997 | 5_3:-1998751 | None:intergenic |
| GACTACACTCATGCATAGGT+TGG | 0.567808 | 5_3:+1999347 | Msa0791150:CDS |
| GTTACTGGTGCTGGAATCGA+AGG | 0.568425 | 5_3:+2001240 | Msa0791150:CDS |
| GAAACTGTAGTGTTGAGCAC+TGG | 0.570041 | 5_3:+2001545 | Msa0791150:CDS |
| AGCTGTTGGAAGAAAATCGC+CGG | 0.572545 | 5_3:+2001474 | Msa0791150:CDS |
| AAATCGCCGGAAGGAGAACA+TGG | 0.572726 | 5_3:+2001487 | Msa0791150:CDS |
| TACTCATCTGTCAAACATCA+GGG | 0.573701 | 5_3:+1999377 | Msa0791150:CDS |
| ATGGAAGTGTCATGACAGCC+GGG | 0.578869 | 5_3:-1999419 | None:intergenic |
| GGCAACTACAGTGGGAAATG+TGG | 0.579709 | 5_3:-2000103 | None:intergenic |
| ATTTCTTCATAGACTCACTC+AGG | 0.587164 | 5_3:-1999077 | None:intergenic |
| GTGAATATCTCAATCTGACC+AGG | 0.587935 | 5_3:-2000039 | None:intergenic |
| AGAACATGGATAAACTTAGG+AGG | 0.588077 | 5_3:+2001501 | Msa0791150:CDS |
| GTTCATAAAATCACATCAGA+AGG | 0.589818 | 5_3:-2001699 | None:intergenic |
| TAAGGCGGCGCGAACAACTC+CGG | 0.589916 | 5_3:-1998703 | None:intergenic |
| GCATGTACCAAATGAAGTCA+AGG | 0.590004 | 5_3:-2001757 | None:intergenic |
| AATCAACACCCTCCGCAACA+TGG | 0.591565 | 5_3:+1998743 | Msa0791150:exon |
| AGATGAGGACGAAGATGAAG+AGG | 0.599265 | 5_3:+2001664 | Msa0791150:CDS |
| GTCATGAAGCAATTCAACCT+TGG | 0.600059 | 5_3:+1999486 | Msa0791150:CDS |
| AGGGAGATGGAGAAATCTGG+AGG | 0.604309 | 5_3:+2001521 | Msa0791150:CDS |
| AGGGTGTTGATTAGGGCTTA+CGG | 0.604717 | 5_3:-1998732 | None:intergenic |
| ACTACATAGGCAACTACAGT+GGG | 0.605400 | 5_3:-2000111 | None:intergenic |
| ACGAGGTGTATCAACTACAT+AGG | 0.606135 | 5_3:-2000124 | None:intergenic |
| ACGTGAAGAGAAACAGCTGT+TGG | 0.606507 | 5_3:+2001460 | Msa0791150:CDS |
| GAACATGGATAAACTTAGGA+GGG | 0.606999 | 5_3:+2001502 | Msa0791150:CDS |
| TTATGTGATGAATCTCGACC+CGG | 0.607451 | 5_3:+1999401 | Msa0791150:CDS |
| GAGGTAACCTTGTCTTATAG+AGG | 0.608238 | 5_3:-2000197 | None:intergenic |
| CAAAATCAACAATACCTCCA+AGG | 0.609268 | 5_3:-2000265 | None:intergenic |
| GGCTTACGGTGGTGATAAGG+CGG | 0.619827 | 5_3:-1998718 | None:intergenic |
| TTGTTGAATGCTAAGATGAG+AGG | 0.620285 | 5_3:-2000216 | None:intergenic |
| AACTACAGTGGGAAATGTGG+AGG | 0.621918 | 5_3:-2000100 | None:intergenic |
| ATGTTGCTCATAAAAGTGGT+AGG | 0.622477 | 5_3:-2000156 | None:intergenic |
| AGCTGTTGAAGCCAGTGCAG+AGG | 0.624332 | 5_3:+2001272 | Msa0791150:CDS |
| CGGGACATACACTGAAGATG+AGG | 0.626150 | 5_3:+2001634 | Msa0791150:CDS |
| CACCGGCTTCCATTTCCATG+GGG | 0.630823 | 5_3:-1998806 | None:intergenic |
| TATCTGCGTCCATGTTGCGG+AGG | 0.634849 | 5_3:-1998752 | None:intergenic |
| GGAAGACTACACTCATGCAT+AGG | 0.648368 | 5_3:+1999343 | Msa0791150:CDS |
| AGATGAGGATGCTATAGATG+AGG | 0.654047 | 5_3:+2001649 | Msa0791150:CDS |
| ACCGGCTTCCATTTCCATGG+GGG | 0.657686 | 5_3:-1998805 | None:intergenic |
| GTTTGCAACCAAGTTCGATG+AGG | 0.658878 | 5_3:+1999542 | Msa0791150:CDS |
| ACTAGTAGGAGTAATTGCAA+AGG | 0.660440 | 5_3:+2001885 | Msa0791150:three_prime_UTR |
| GTTGGAAGAAAATCGCCGGA+AGG | 0.664727 | 5_3:+2001478 | Msa0791150:CDS |
| AAGTCAAAATTCCACCATTG+GGG | 0.670613 | 5_3:-1999509 | None:intergenic |
| GGTGTAGAAGAGAACGACGC+CGG | 0.671853 | 5_3:-1998679 | None:intergenic |
| CAGAGTCATTCGTACTACGA+AGG | 0.677196 | 5_3:-2001786 | None:intergenic |
| AACTACATAGGCAACTACAG+TGG | 0.686317 | 5_3:-2000112 | None:intergenic |
| GTAGTATCCTCTATAAGACA+AGG | 0.691493 | 5_3:+2000190 | Msa0791150:CDS |
| GGCGGCGCGAACAACTCCGG+TGG | 0.695334 | 5_3:-1998700 | None:intergenic |
| TCTCATCTTAGCATTCAACA+AGG | 0.708282 | 5_3:+2000218 | Msa0791150:CDS |
| ATAGAATGTATGAAATAACA+GGG | 0.711420 | 5_3:-2001820 | None:intergenic |
| ACTCATCTGTCAAACATCAG+GGG | 0.713135 | 5_3:+1999378 | Msa0791150:CDS |
| GTGTTGATTAGGGCTTACGG+TGG | 0.717038 | 5_3:-1998729 | None:intergenic |
| GTCAGATTGAGATATTCACA+TGG | 0.740453 | 5_3:+2000043 | Msa0791150:CDS |
| CTCTCTCGGAGACAACACGC+CGG | 0.774524 | 5_3:+1998660 | Msa0791150:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCAAACAAAATTTATTT+AGG | + | chr5_3:1998879-1998898 | Msa0791150:intron | 10.0% |
| !! | ATAATATATATATATATTGC+TGG | + | chr5_3:1999602-1999621 | Msa0791150:intron | 10.0% |
| !!! | TGTTTAAGTTATTATTTTAT+AGG | + | chr5_3:2000865-2000884 | Msa0791150:intron | 10.0% |
| !!! | TACAAAAAAAAACGTTTTTA+GGG | - | chr5_3:1998972-1998991 | None:intergenic | 15.0% |
| !!! | ATACAAAAAAAAACGTTTTT+AGG | - | chr5_3:1998973-1998992 | None:intergenic | 15.0% |
| !! | ATAAATAAATCATGACATTT+GGG | + | chr5_3:2000505-2000524 | Msa0791150:intron | 15.0% |
| !!! | ATTTTAACATTTCATTCAAT+TGG | + | chr5_3:2000739-2000758 | Msa0791150:intron | 15.0% |
| !! | ATAATAACTTAAACATGAAA+GGG | - | chr5_3:2000860-2000879 | None:intergenic | 15.0% |
| !! | AATAATAACTTAAACATGAA+AGG | - | chr5_3:2000861-2000880 | None:intergenic | 15.0% |
| !!! | TAATTTGAAATTGTGAATCA+TGG | + | chr5_3:1999012-1999031 | Msa0791150:intron | 20.0% |
| !! | AATATAACTCATTTGTGTTA+AGG | + | chr5_3:1999315-1999334 | Msa0791150:intron | 20.0% |
| !! | ATATAACTCATTTGTGTTAA+GGG | + | chr5_3:1999316-1999335 | Msa0791150:intron | 20.0% |
| !!! | TATATATATATTGCTGGTTA+TGG | + | chr5_3:1999608-1999627 | Msa0791150:intron | 20.0% |
| !!! | GTTTTACTTATATATGCATT+CGG | + | chr5_3:1999652-1999671 | Msa0791150:intron | 20.0% |
| !! | GCATAAAAAAAAATTAAGCA+GGG | - | chr5_3:1999723-1999742 | None:intergenic | 20.0% |
| !!! | TGCTTAATTTTTTTTTATGC+CGG | + | chr5_3:1999723-1999742 | Msa0791150:intron | 20.0% |
| !! | CATGAAAACAAATAAATTGT+TGG | - | chr5_3:1999886-1999905 | None:intergenic | 20.0% |
| !!! | TATCATTTTTATAGCTTTCA+AGG | - | chr5_3:2000341-2000360 | None:intergenic | 20.0% |
| !!! | TCTAATTGATAGTTTTATCT+CGG | + | chr5_3:2000420-2000439 | Msa0791150:intron | 20.0% |
| !! | GTTCAAATTAAGTACTTAAA+AGG | - | chr5_3:2000474-2000493 | None:intergenic | 20.0% |
| !! | GATAAATAAATCATGACATT+TGG | + | chr5_3:2000504-2000523 | Msa0791150:intron | 20.0% |
| !!! | AACTTTTAAGTTTAACAGAT+TGG | + | chr5_3:2000794-2000813 | Msa0791150:intron | 20.0% |
| !!! | ACTTTTAAGTTTAACAGATT+GGG | + | chr5_3:2000795-2000814 | Msa0791150:intron | 20.0% |
| !!! | AATTTGTTTTGTTTATCTAG+TGG | + | chr5_3:2001088-2001107 | Msa0791150:intron | 20.0% |
| !! | CAAAATCAAAAGTGAAATAA+TGG | - | chr5_3:2001357-2001376 | None:intergenic | 20.0% |
| !!! | TTTTGATTTTGCATTTAGTT+AGG | + | chr5_3:2001366-2001385 | Msa0791150:intron | 20.0% |
| !! | ATAGAATGTATGAAATAACA+GGG | - | chr5_3:2001823-2001842 | None:intergenic | 20.0% |
| !! | TACTAGTATAAAAAACATCT+AGG | - | chr5_3:2001872-2001891 | None:intergenic | 20.0% |
| !!! | TAGATGTTTTTTATACTAGT+AGG | + | chr5_3:2001871-2001890 | Msa0791150:three_prime_UTR | 20.0% |
| !! | AAAACAGATACTAGATATAT+GGG | - | chr5_3:2001969-2001988 | None:intergenic | 20.0% |
| ! | GGAAAAAAACAAACAAAAAG+AGG | + | chr5_3:1999053-1999072 | Msa0791150:intron | 25.0% |
| !! | ATATCAATGTTAGAAGCATA+TGG | - | chr5_3:1999441-1999460 | None:intergenic | 25.0% |
| ! | ATTATACTGTACATGAGTTT+AGG | - | chr5_3:1999587-1999606 | None:intergenic | 25.0% |
| ! | GGCATAAAAAAAAATTAAGC+AGG | - | chr5_3:1999724-1999743 | None:intergenic | 25.0% |
| !!! | GCTTAATTTTTTTTTATGCC+GGG | + | chr5_3:1999724-1999743 | Msa0791150:intron | 25.0% |
| ! | TATACCAATAGCTTAATTAG+AGG | - | chr5_3:1999792-1999811 | None:intergenic | 25.0% |
| !!! | AAGGTGTTTGATTAATCTTT+TGG | - | chr5_3:2000560-2000579 | None:intergenic | 25.0% |
| ! | AAGTCTAACTCTTAATTCAT+AGG | - | chr5_3:2000617-2000636 | None:intergenic | 25.0% |
| !!! | CTTTTAAGTTTAACAGATTG+GGG | + | chr5_3:2000796-2000815 | Msa0791150:intron | 25.0% |
| ! | AACAAAACAAATTCGACAAA+AGG | - | chr5_3:2001081-2001100 | None:intergenic | 25.0% |
| ! | GATAGAATGTATGAAATAAC+AGG | - | chr5_3:2001824-2001843 | None:intergenic | 25.0% |
| ! | CAAAACAGATACTAGATATA+TGG | - | chr5_3:2001970-2001989 | None:intergenic | 25.0% |
| !!! | ATCTAGTATCTGTTTTGTTT+AGG | + | chr5_3:2001973-2001992 | Msa0791150:three_prime_UTR | 25.0% |
| !!! | TCTAGTATCTGTTTTGTTTA+GGG | + | chr5_3:2001974-2001993 | Msa0791150:three_prime_UTR | 25.0% |
| GTAAAGTGAAAGTGAATAAG+CGG | - | chr5_3:1998858-1998877 | None:intergenic | 30.0% | |
| TGAAATTGTGAATCATGGAA+TGG | + | chr5_3:1999017-1999036 | Msa0791150:intron | 30.0% | |
| !!! | TGGAATGGTTTTTGTTTTCA+AGG | + | chr5_3:1999032-1999051 | Msa0791150:intron | 30.0% |
| ATGAAGAAATTGGACATTGA+AGG | + | chr5_3:1999090-1999109 | Msa0791150:CDS | 30.0% | |
| !!! | ACAGGTTTTCTTTTGAAGTT+AGG | - | chr5_3:1999132-1999151 | None:intergenic | 30.0% |
| ! | TATCATCATTGTTGTTGGAA+TGG | + | chr5_3:1999152-1999171 | Msa0791150:CDS | 30.0% |
| CAATGAGTTACACAAAATCA+CGG | + | chr5_3:1999226-1999245 | Msa0791150:intron | 30.0% | |
| GAAACTATATTGTGCATGTT+TGG | - | chr5_3:1999263-1999282 | None:intergenic | 30.0% | |
| TTACTTATATATGCATTCGG+TGG | + | chr5_3:1999655-1999674 | Msa0791150:intron | 30.0% | |
| CTAGTATCAATGATATCAAG+AGG | - | chr5_3:1999690-1999709 | None:intergenic | 30.0% | |
| CATAAGATCAAACAAACTCA+AGG | - | chr5_3:1999757-1999776 | None:intergenic | 30.0% | |
| TTGTCCTCTAATTAAGCTAT+TGG | + | chr5_3:1999785-1999804 | Msa0791150:intron | 30.0% | |
| GGAACAAAAGTAAAACACAT+CGG | - | chr5_3:1999909-1999928 | None:intergenic | 30.0% | |
| TGCATATAAGTTCTGTAGAT+GGG | - | chr5_3:1999930-1999949 | None:intergenic | 30.0% | |
| TTGCATATAAGTTCTGTAGA+TGG | - | chr5_3:1999931-1999950 | None:intergenic | 30.0% | |
| ACAGAAATTACCTGAAATTG+AGG | - | chr5_3:1999973-1999992 | None:intergenic | 30.0% | |
| AACTATCAATTAGATCTCAC+AGG | - | chr5_3:2000414-2000433 | None:intergenic | 30.0% | |
| !!! | TTGATTAATCTTTTGGTGTC+AGG | - | chr5_3:2000553-2000572 | None:intergenic | 30.0% |
| TTATATGTGCAATTAGAGAG+AGG | - | chr5_3:2000689-2000708 | None:intergenic | 30.0% | |
| TTAAAAGATCTTATGCTTCG+TGG | + | chr5_3:2000716-2000735 | Msa0791150:intron | 30.0% | |
| GATTCAGCTCAAATATACAA+AGG | - | chr5_3:2000934-2000953 | None:intergenic | 30.0% | |
| AAACAAATTCGACAAAAGGA+AGG | - | chr5_3:2001077-2001096 | None:intergenic | 30.0% | |
| ! | TACAGTAATTTAAGATCAGC+TGG | + | chr5_3:2001207-2001226 | Msa0791150:CDS | 30.0% |
| !! | GATGATGATGATGTTGATTT+CGG | + | chr5_3:2001614-2001633 | Msa0791150:CDS | 30.0% |
| !! | ATGATGATGATGTTGATTTC+GGG | + | chr5_3:2001615-2001634 | Msa0791150:CDS | 30.0% |
| GTTCATAAAATCACATCAGA+AGG | - | chr5_3:2001702-2001721 | None:intergenic | 30.0% | |
| ! | GATGTGATTTTATGAACGTT+TGG | + | chr5_3:2001705-2001724 | Msa0791150:exon | 30.0% |
| GAAATAACAGGGCAATAAAT+CGG | - | chr5_3:2001812-2001831 | None:intergenic | 30.0% | |
| ! | ATTGTGAGATTTTCAAACTG+CGG | - | chr5_3:2002050-2002069 | None:intergenic | 30.0% |
| ATTTCTTCATAGACTCACTC+AGG | - | chr5_3:1999080-1999099 | None:intergenic | 35.0% | |
| GAGTGAGTCTATGAAGAAAT+TGG | + | chr5_3:1999080-1999099 | Msa0791150:CDS | 35.0% | |
| CCAACAACAATGATGATAAC+AGG | - | chr5_3:1999150-1999169 | None:intergenic | 35.0% | |
| CCTGTTATCATCATTGTTGT+TGG | + | chr5_3:1999147-1999166 | Msa0791150:CDS | 35.0% | |
| !! | ACGTAGTAGTTTTGCTGATT+TGG | + | chr5_3:1999292-1999311 | Msa0791150:intron | 35.0% |
| ATACTCATCTGTCAAACATC+AGG | + | chr5_3:1999376-1999395 | Msa0791150:CDS | 35.0% | |
| TACTCATCTGTCAAACATCA+GGG | + | chr5_3:1999377-1999396 | Msa0791150:CDS | 35.0% | |
| AAGTCAAAATTCCACCATTG+GGG | - | chr5_3:1999512-1999531 | None:intergenic | 35.0% | |
| GAAGTCAAAATTCCACCATT+GGG | - | chr5_3:1999513-1999532 | None:intergenic | 35.0% | |
| AGAAGTCAAAATTCCACCAT+TGG | - | chr5_3:1999514-1999533 | None:intergenic | 35.0% | |
| AAACTTAACCTCATCGAACT+TGG | - | chr5_3:1999553-1999572 | None:intergenic | 35.0% | |
| GTTTACATTGTCATTGTCAG+TGG | + | chr5_3:1999829-1999848 | Msa0791150:intron | 35.0% | |
| TGTTTATGCTCCTCAATTTC+AGG | + | chr5_3:1999960-1999979 | Msa0791150:intron | 35.0% | |
| TCAACTTGACTATGTTCTTG+TGG | + | chr5_3:2000011-2000030 | Msa0791150:CDS | 35.0% | |
| GTCAGATTGAGATATTCACA+TGG | + | chr5_3:2000043-2000062 | Msa0791150:CDS | 35.0% | |
| ATGTTGCTCATAAAAGTGGT+AGG | - | chr5_3:2000159-2000178 | None:intergenic | 35.0% | |
| AAGCATGTTGCTCATAAAAG+TGG | - | chr5_3:2000163-2000182 | None:intergenic | 35.0% | |
| GTAGTATCCTCTATAAGACA+AGG | + | chr5_3:2000190-2000209 | Msa0791150:CDS | 35.0% | |
| TTGTTGAATGCTAAGATGAG+AGG | - | chr5_3:2000219-2000238 | None:intergenic | 35.0% | |
| TCTCATCTTAGCATTCAACA+AGG | + | chr5_3:2000218-2000237 | Msa0791150:CDS | 35.0% | |
| CAAAATCAACAATACCTCCA+AGG | - | chr5_3:2000268-2000287 | None:intergenic | 35.0% | |
| !! | GTCTTTTAACTCACTACAAC+AGG | + | chr5_3:2000379-2000398 | Msa0791150:intron | 35.0% |
| !! | GAACTTGATAGCTGTTTTCA+AGG | - | chr5_3:2000579-2000598 | None:intergenic | 35.0% |
| GAAAACAGCTATCAAGTTCA+TGG | + | chr5_3:2000580-2000599 | Msa0791150:intron | 35.0% | |
| TTTAACAGATTGGGGTGAAA+TGG | + | chr5_3:2000804-2000823 | Msa0791150:intron | 35.0% | |
| TTAACAGATTGGGGTGAAAT+GGG | + | chr5_3:2000805-2000824 | Msa0791150:intron | 35.0% | |
| ! | AACCATTTTCCTGTAGTTTC+AGG | + | chr5_3:2000893-2000912 | Msa0791150:intron | 35.0% |
| ! | ACCATTTTCCTGTAGTTTCA+GGG | + | chr5_3:2000894-2000913 | Msa0791150:intron | 35.0% |
| GCTCAAATATACAAAGGAAG+AGG | - | chr5_3:2000928-2000947 | None:intergenic | 35.0% | |
| TCTGTTCAACAGAATTGACT+GGG | - | chr5_3:2001009-2001028 | None:intergenic | 35.0% | |
| TTCTGTTCAACAGAATTGAC+TGG | - | chr5_3:2001010-2001029 | None:intergenic | 35.0% | |
| !! | CTAGTGGATGAAAGATTTTG+AGG | + | chr5_3:2001104-2001123 | Msa0791150:intron | 35.0% |
| CAAGAGCAGTTAATACTTGT+AGG | - | chr5_3:2001310-2001329 | None:intergenic | 35.0% | |
| ! | GTTAGGTTGTATGTCTTTGA+TGG | + | chr5_3:2001383-2001402 | Msa0791150:intron | 35.0% |
| AGGAGAACATGGATAAACTT+AGG | + | chr5_3:2001498-2001517 | Msa0791150:CDS | 35.0% | |
| AGAACATGGATAAACTTAGG+AGG | + | chr5_3:2001501-2001520 | Msa0791150:CDS | 35.0% | |
| GAACATGGATAAACTTAGGA+GGG | + | chr5_3:2001502-2001521 | Msa0791150:CDS | 35.0% | |
| !! | CACTGGTTTGAAAAACAAAG+AGG | + | chr5_3:2001562-2001581 | Msa0791150:CDS | 35.0% |
| TGGTTTGAAAAACAAAGAGG+AGG | + | chr5_3:2001565-2001584 | Msa0791150:CDS | 35.0% | |
| TATGAACGTTTGGATTGCAT+CGG | + | chr5_3:2001715-2001734 | Msa0791150:three_prime_UTR | 35.0% | |
| TATAGGACCTTGACTTCATT+TGG | + | chr5_3:2001750-2001769 | Msa0791150:three_prime_UTR | 35.0% | |
| CTATCAGCATTATTCTCTCT+AGG | + | chr5_3:2001839-2001858 | Msa0791150:three_prime_UTR | 35.0% | |
| ACTAGTAGGAGTAATTGCAA+AGG | + | chr5_3:2001885-2001904 | Msa0791150:three_prime_UTR | 35.0% | |
| ATTTGCACAAAAATCGAGCA+TGG | - | chr5_3:2001914-2001933 | None:intergenic | 35.0% | |
| ! | CTCGATTTTTGTGCAAATTG+AGG | + | chr5_3:2001916-2001935 | Msa0791150:three_prime_UTR | 35.0% |
| !! | AGAAAGTACTTGAGAGTCAC+CGG | - | chr5_3:1998826-1998845 | None:intergenic | 40.0% |
| ! | ATCATTGTTGTTGGAATGGC+AGG | + | chr5_3:1999156-1999175 | Msa0791150:CDS | 40.0% |
| ACTCATTTGTGTTAAGGGAG+TGG | + | chr5_3:1999321-1999340 | Msa0791150:intron | 40.0% | |
| CTCATTTGTGTTAAGGGAGT+GGG | + | chr5_3:1999322-1999341 | Msa0791150:intron | 40.0% | |
| ACTCATCTGTCAAACATCAG+GGG | + | chr5_3:1999378-1999397 | Msa0791150:CDS | 40.0% | |
| TTATGTGATGAATCTCGACC+CGG | + | chr5_3:1999401-1999420 | Msa0791150:CDS | 40.0% | |
| GTCATGAAGCAATTCAACCT+TGG | + | chr5_3:1999486-1999505 | Msa0791150:CDS | 40.0% | |
| TATGTTCTTGTGGATACTCC+TGG | + | chr5_3:2000021-2000040 | Msa0791150:CDS | 40.0% | |
| GTGAATATCTCAATCTGACC+AGG | - | chr5_3:2000042-2000061 | None:intergenic | 40.0% | |
| ATATTCACATGGTCTGCTTC+TGG | + | chr5_3:2000054-2000073 | Msa0791150:CDS | 40.0% | |
| ACTACATAGGCAACTACAGT+GGG | - | chr5_3:2000114-2000133 | None:intergenic | 40.0% | |
| AACTACATAGGCAACTACAG+TGG | - | chr5_3:2000115-2000134 | None:intergenic | 40.0% | |
| ACGAGGTGTATCAACTACAT+AGG | - | chr5_3:2000127-2000146 | None:intergenic | 40.0% | |
| GAGGTAACCTTGTCTTATAG+AGG | - | chr5_3:2000200-2000219 | None:intergenic | 40.0% | |
| GGTGAAATGGGAAGCAATAT+TGG | + | chr5_3:2000817-2000836 | Msa0791150:intron | 40.0% | |
| ACCCTGAAACTACAGGAAAA+TGG | - | chr5_3:2000898-2000917 | None:intergenic | 40.0% | |
| TCCTGTAGTTTCAGGGTTTA+TGG | + | chr5_3:2000901-2000920 | Msa0791150:intron | 40.0% | |
| CCTGTAGTTTCAGGGTTTAT+GGG | + | chr5_3:2000902-2000921 | Msa0791150:intron | 40.0% | |
| CAACAGAATTGACTGGGTAT+TGG | - | chr5_3:2001003-2001022 | None:intergenic | 40.0% | |
| TTTAACTCAGAGCCTTTCTC+TGG | + | chr5_3:2001170-2001189 | Msa0791150:CDS | 40.0% | |
| GTTTATCCATGTTCTCCTTC+CGG | - | chr5_3:2001496-2001515 | None:intergenic | 40.0% | |
| AGATGAGGATGCTATAGATG+AGG | + | chr5_3:2001649-2001668 | Msa0791150:CDS | 40.0% | |
| GCATGTACCAAATGAAGTCA+AGG | - | chr5_3:2001760-2001779 | None:intergenic | 40.0% | |
| ! | AGATTTTCAAACTGCGGATG+TGG | - | chr5_3:2002044-2002063 | None:intergenic | 40.0% |
| !! | AGGGTGTTGATTAGGGCTTA+CGG | - | chr5_3:1998735-1998754 | None:intergenic | 45.0% |
| AAGTGAATAAGCGGCGAGTT+TGG | - | chr5_3:1998849-1998868 | None:intergenic | 45.0% | |
| GACATTGAAGGTTCCTCTTC+TGG | + | chr5_3:1999102-1999121 | Msa0791150:CDS | 45.0% | |
| GAAGTTAGGTGAACCAGAAG+AGG | - | chr5_3:1999118-1999137 | None:intergenic | 45.0% | |
| GGAAGACTACACTCATGCAT+AGG | + | chr5_3:1999343-1999362 | Msa0791150:CDS | 45.0% | |
| GACTACACTCATGCATAGGT+TGG | + | chr5_3:1999347-1999366 | Msa0791150:CDS | 45.0% | |
| !! | TATGGAAGTGTCATGACAGC+CGG | - | chr5_3:1999423-1999442 | None:intergenic | 45.0% |
| GTTTGCAACCAAGTTCGATG+AGG | + | chr5_3:1999542-1999561 | Msa0791150:CDS | 45.0% | |
| CAAACTCAAGGAAAGCTACC+CGG | - | chr5_3:1999745-1999764 | None:intergenic | 45.0% | |
| ! | CATTGTCAGTGGCTCGTTTT+AGG | + | chr5_3:1999840-1999859 | Msa0791150:intron | 45.0% |
| AACTACAGTGGGAAATGTGG+AGG | - | chr5_3:2000103-2000122 | None:intergenic | 45.0% | |
| AGCACAACATGAGTTTGCCT+TGG | + | chr5_3:2000248-2000267 | Msa0791150:CDS | 45.0% | |
| ACAACATGAGTTTGCCTTGG+AGG | + | chr5_3:2000251-2000270 | Msa0791150:CDS | 45.0% | |
| CCCATAAACCCTGAAACTAC+AGG | - | chr5_3:2000905-2000924 | None:intergenic | 45.0% | |
| ATTCATCCAGTGCCAGAGAA+AGG | - | chr5_3:2001185-2001204 | None:intergenic | 45.0% | |
| TTCCATGTATTCCTCTGCAC+TGG | - | chr5_3:2001286-2001305 | None:intergenic | 45.0% | |
| ACGTGAAGAGAAACAGCTGT+TGG | + | chr5_3:2001460-2001479 | Msa0791150:CDS | 45.0% | |
| AGCTGTTGGAAGAAAATCGC+CGG | + | chr5_3:2001474-2001493 | Msa0791150:CDS | 45.0% | |
| GGATAAACTTAGGAGGGAGA+TGG | + | chr5_3:2001508-2001527 | Msa0791150:CDS | 45.0% | |
| ! | GAAACTGTAGTGTTGAGCAC+TGG | + | chr5_3:2001545-2001564 | Msa0791150:CDS | 45.0% |
| GAAAAACAAAGAGGAGGACG+AGG | + | chr5_3:2001571-2001590 | Msa0791150:CDS | 45.0% | |
| GGATGAAGAGGATGAGGAAA+TGG | + | chr5_3:2001592-2001611 | Msa0791150:CDS | 45.0% | |
| AGATGAGGACGAAGATGAAG+AGG | + | chr5_3:2001664-2001683 | Msa0791150:CDS | 45.0% | |
| ATCGGAACTAGCGCTTGTAT+AGG | + | chr5_3:2001733-2001752 | Msa0791150:three_prime_UTR | 45.0% | |
| CAGAGTCATTCGTACTACGA+AGG | - | chr5_3:2001789-2001808 | None:intergenic | 45.0% | |
| GTCGTTCTCTTCTACACCAC+CGG | + | chr5_3:1998684-1998703 | Msa0791150:five_prime_UTR | 50.0% | |
| TAGGGCTTACGGTGGTGATA+AGG | - | chr5_3:1998724-1998743 | None:intergenic | 50.0% | |
| !! | GTGTTGATTAGGGCTTACGG+TGG | - | chr5_3:1998732-1998751 | None:intergenic | 50.0% |
| !! | GTTGCGGAGGGTGTTGATTA+GGG | - | chr5_3:1998742-1998761 | None:intergenic | 50.0% |
| !! | TGTTGCGGAGGGTGTTGATT+AGG | - | chr5_3:1998743-1998762 | None:intergenic | 50.0% |
| AATCAACACCCTCCGCAACA+TGG | + | chr5_3:1998743-1998762 | Msa0791150:exon | 50.0% | |
| CGTTATCTGCGTCCATGTTG+CGG | - | chr5_3:1998758-1998777 | None:intergenic | 50.0% | |
| !! | ATTTCCATGGGGGTGTCTTC+GGG | - | chr5_3:1998798-1998817 | None:intergenic | 50.0% |
| !! | CATTTCCATGGGGGTGTCTT+CGG | - | chr5_3:1998799-1998818 | None:intergenic | 50.0% |
| !! | TCACCGGCTTCCATTTCCAT+GGG | - | chr5_3:1998810-1998829 | None:intergenic | 50.0% |
| GAGTAACGCTGTGTCTATCG+TGG | - | chr5_3:1998936-1998955 | None:intergenic | 50.0% | |
| !! | ATGGAAGTGTCATGACAGCC+GGG | - | chr5_3:1999422-1999441 | None:intergenic | 50.0% |
| CAATTCAACCTTGGCCCCAA+TGG | + | chr5_3:1999495-1999514 | Msa0791150:CDS | 50.0% | |
| AAATTCCACCATTGGGGCCA+AGG | - | chr5_3:1999506-1999525 | None:intergenic | 50.0% | |
| GGCAACTACAGTGGGAAATG+TGG | - | chr5_3:2000106-2000125 | None:intergenic | 50.0% | |
| ! | GTGGTAGGATTTTCTGCACG+AGG | - | chr5_3:2000144-2000163 | None:intergenic | 50.0% |
| TTTGGGCTGTGTCTGTGATG+AGG | + | chr5_3:2000522-2000541 | Msa0791150:intron | 50.0% | |
| GCTGTGTCTGTGATGAGGTT+TGG | + | chr5_3:2000527-2000546 | Msa0791150:intron | 50.0% | |
| GATCTGAACTTGCAGCTGCT+TGG | - | chr5_3:2001134-2001153 | None:intergenic | 50.0% | |
| GCTGGAGTTTCTGCAGTTAC+TGG | + | chr5_3:2001225-2001244 | Msa0791150:CDS | 50.0% | |
| GTTTCTGCAGTTACTGGTGC+TGG | + | chr5_3:2001231-2001250 | Msa0791150:CDS | 50.0% | |
| ! | GTTACTGGTGCTGGAATCGA+AGG | + | chr5_3:2001240-2001259 | Msa0791150:CDS | 50.0% |
| AGCCAGTGCAGAGGAATACA+TGG | + | chr5_3:2001281-2001300 | Msa0791150:CDS | 50.0% | |
| GTTGGAAGAAAATCGCCGGA+AGG | + | chr5_3:2001478-2001497 | Msa0791150:CDS | 50.0% | |
| AAATCGCCGGAAGGAGAACA+TGG | + | chr5_3:2001487-2001506 | Msa0791150:CDS | 50.0% | |
| AGGAGGGAGATGGAGAAATC+TGG | + | chr5_3:2001518-2001537 | Msa0791150:CDS | 50.0% | |
| AGGGAGATGGAGAAATCTGG+AGG | + | chr5_3:2001521-2001540 | Msa0791150:CDS | 50.0% | |
| CGGGACATACACTGAAGATG+AGG | + | chr5_3:2001634-2001653 | Msa0791150:CDS | 50.0% | |
| GGTGTAGAAGAGAACGACGC+CGG | - | chr5_3:1998682-1998701 | None:intergenic | 55.0% | |
| GGCTTACGGTGGTGATAAGG+CGG | - | chr5_3:1998721-1998740 | None:intergenic | 55.0% | |
| ATCTGCGTCCATGTTGCGGA+GGG | - | chr5_3:1998754-1998773 | None:intergenic | 55.0% | |
| TATCTGCGTCCATGTTGCGG+AGG | - | chr5_3:1998755-1998774 | None:intergenic | 55.0% | |
| !! | TTTCCATGGGGGTGTCTTCG+GGG | - | chr5_3:1998797-1998816 | None:intergenic | 55.0% |
| CGAAGACACCCCCATGGAAA+TGG | + | chr5_3:1998797-1998816 | Msa0791150:CDS | 55.0% | |
| ACCCCCATGGAAATGGAAGC+CGG | + | chr5_3:1998804-1998823 | Msa0791150:CDS | 55.0% | |
| ! | ACCGGCTTCCATTTCCATGG+GGG | - | chr5_3:1998808-1998827 | None:intergenic | 55.0% |
| !! | CACCGGCTTCCATTTCCATG+GGG | - | chr5_3:1998809-1998828 | None:intergenic | 55.0% |
| !! | GTCACCGGCTTCCATTTCCA+TGG | - | chr5_3:1998811-1998830 | None:intergenic | 55.0% |
| GTTGGAATGGCAGGTCAGTC+AGG | + | chr5_3:1999165-1999184 | Msa0791150:intron | 55.0% | |
| TTCAACCTTGGCCCCAATGG+TGG | + | chr5_3:1999498-1999517 | Msa0791150:CDS | 55.0% | |
| TCAGAGCCTTTCTCTGGCAC+TGG | + | chr5_3:2001176-2001195 | Msa0791150:CDS | 55.0% | |
| AGCTGTTGAAGCCAGTGCAG+AGG | + | chr5_3:2001272-2001291 | Msa0791150:CDS | 55.0% | |
| AGAGGAGGACGAGGATGAAG+AGG | + | chr5_3:2001580-2001599 | Msa0791150:CDS | 55.0% | |
| GGACGAGGATGAAGAGGATG+AGG | + | chr5_3:2001586-2001605 | Msa0791150:CDS | 55.0% | |
| CACACACACGCGAGCTCTCT+CGG | + | chr5_3:1998646-1998665 | Msa0791150:five_prime_UTR | 60.0% | |
| CTCTCTCGGAGACAACACGC+CGG | + | chr5_3:1998660-1998679 | Msa0791150:five_prime_UTR | 60.0% | |
| TAAGGCGGCGCGAACAACTC+CGG | - | chr5_3:1998706-1998725 | None:intergenic | 60.0% | |
| TAACCCCGAAGACACCCCCA+TGG | + | chr5_3:1998791-1998810 | Msa0791150:CDS | 60.0% | |
| GGCGGCGCGAACAACTCCGG+TGG | - | chr5_3:1998703-1998722 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 1998620 | 2002088 | 1998620 | ID=Msa0791150;Name=Msa0791150 |
| chr5_3 | mRNA | 1998620 | 2002088 | 1998620 | ID=Msa0791150-mRNA-1;Parent=Msa0791150;Name=Msa0791150-mRNA-1;_AED=0.09;_eAED=0.09;_QI=142|1|1|1|1|1|6|382|395 |
| chr5_3 | exon | 1998620 | 1998836 | 1998620 | ID=Msa0791150-mRNA-1:exon:821;Parent=Msa0791150-mRNA-1 |
| chr5_3 | exon | 1999054 | 1999177 | 1999054 | ID=Msa0791150-mRNA-1:exon:822;Parent=Msa0791150-mRNA-1 |
| chr5_3 | exon | 1999337 | 1999563 | 1999337 | ID=Msa0791150-mRNA-1:exon:823;Parent=Msa0791150-mRNA-1 |
| chr5_3 | exon | 1999982 | 2000272 | 1999982 | ID=Msa0791150-mRNA-1:exon:824;Parent=Msa0791150-mRNA-1 |
| chr5_3 | exon | 2001108 | 2001313 | 2001108 | ID=Msa0791150-mRNA-1:exon:825;Parent=Msa0791150-mRNA-1 |
| chr5_3 | exon | 2001442 | 2002088 | 2001442 | ID=Msa0791150-mRNA-1:exon:826;Parent=Msa0791150-mRNA-1 |
| chr5_3 | five_prime_UTR | 1998620 | 1998761 | 1998620 | ID=Msa0791150-mRNA-1:five_prime_utr;Parent=Msa0791150-mRNA-1 |
| chr5_3 | CDS | 1998762 | 1998836 | 1998762 | ID=Msa0791150-mRNA-1:cds;Parent=Msa0791150-mRNA-1 |
| chr5_3 | CDS | 1999054 | 1999177 | 1999054 | ID=Msa0791150-mRNA-1:cds;Parent=Msa0791150-mRNA-1 |
| chr5_3 | CDS | 1999337 | 1999563 | 1999337 | ID=Msa0791150-mRNA-1:cds;Parent=Msa0791150-mRNA-1 |
| chr5_3 | CDS | 1999982 | 2000272 | 1999982 | ID=Msa0791150-mRNA-1:cds;Parent=Msa0791150-mRNA-1 |
| chr5_3 | CDS | 2001108 | 2001313 | 2001108 | ID=Msa0791150-mRNA-1:cds;Parent=Msa0791150-mRNA-1 |
| chr5_3 | CDS | 2001442 | 2001706 | 2001442 | ID=Msa0791150-mRNA-1:cds;Parent=Msa0791150-mRNA-1 |
| chr5_3 | three_prime_UTR | 2001707 | 2002088 | 2001707 | ID=Msa0791150-mRNA-1:three_prime_utr;Parent=Msa0791150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
