Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184820 | XP_003592221.1 | 99.242 | 396 | 2 | 1 | 1 | 395 | 1 | 396 | 0.0 | 803 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184820 | sp|Q8W586|QQT2_ARATH | 72.571 | 350 | 95 | 1 | 19 | 368 | 4 | 352 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184820 | G7IEN9 | 99.242 | 396 | 2 | 1 | 1 | 395 | 1 | 396 | 0.0 | 803 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa0184820 | 0.808249 | 3.398341e-50 | -8.615850e-47 |
| Msa0049750 | Msa0184820 | 0.812916 | 3.331351e-51 | -8.615850e-47 |
| Msa0076120 | Msa0184820 | 0.997544 | 1.846602e-244 | -8.615850e-47 |
| Msa0133410 | Msa0184820 | 0.995303 | 6.021836e-215 | -8.615850e-47 |
| Msa0181540 | Msa0184820 | 0.977235 | 2.232630e-143 | -8.615850e-47 |
| Msa0184820 | Msa0184880 | 0.979837 | 7.458714e-149 | -8.615850e-47 |
| Msa0184820 | Msa0502090 | 0.826009 | 3.432472e-54 | -8.615850e-47 |
| Msa0184820 | Msa0791150 | 0.982821 | 4.338041e-156 | -8.615850e-47 |
| Msa0184820 | Msa1208380 | 0.820917 | 5.324809e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184820 | MtrunA17_Chr1g0202821 | 99.242 | 396 | 2 | 1 | 1 | 395 | 1 | 396 | 0.0 | 803 |
| Msa0184820 | MtrunA17_Chr3g0119231 | 29.255 | 188 | 128 | 3 | 61 | 245 | 6 | 191 | 4.38e-19 | 86.3 |
| Msa0184820 | MtrunA17_Chr8g0364001 | 30.688 | 189 | 122 | 3 | 61 | 244 | 6 | 190 | 9.52e-19 | 85.9 |
| Msa0184820 | MtrunA17_Chr5g0442031 | 39.506 | 81 | 49 | 0 | 61 | 141 | 6 | 86 | 1.44e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184820 | AT4G21800.2 | 72.571 | 350 | 95 | 1 | 19 | 368 | 4 | 352 | 0.0 | 531 |
| Msa0184820 | AT4G21800.1 | 72.571 | 350 | 95 | 1 | 19 | 368 | 4 | 352 | 0.0 | 531 |
| Msa0184820 | AT4G12790.4 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0184820 | AT4G12790.2 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0184820 | AT4G12790.6 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0184820 | AT4G12790.5 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0184820 | AT4G12790.1 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0184820 | AT4G12790.3 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0184820 | AT5G22370.2 | 27.957 | 186 | 131 | 3 | 61 | 244 | 6 | 190 | 1.60e-15 | 77.0 |
| Msa0184820 | AT5G22370.3 | 27.957 | 186 | 131 | 3 | 61 | 244 | 6 | 190 | 1.60e-15 | 77.0 |
| Msa0184820 | AT5G22370.1 | 27.957 | 186 | 131 | 3 | 61 | 244 | 6 | 190 | 1.60e-15 | 77.0 |
Find 112 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATTGAAGGTTCCTCTTC+TGG | 0.208586 | 1_4:-74457222 | Msa0184820:CDS |
| CAAAACAGATACTAGATATA+TGG | 0.237911 | 1_4:+74454355 | None:intergenic |
| TGTTGCGGAGGGTGTTGATT+AGG | 0.252127 | 1_4:+74457584 | None:intergenic |
| GCTGGAGTTTCTGCAGTTAC+TGG | 0.283127 | 1_4:-74455097 | Msa0184820:CDS |
| GATGATGATGATGTTGATTT+CGG | 0.300467 | 1_4:-74454708 | Msa0184820:CDS |
| GTTGCGGAGGGTGTTGATTA+GGG | 0.319457 | 1_4:+74457585 | None:intergenic |
| CCTGTTATCATCATTGTTGT+TGG | 0.328714 | 1_4:-74457177 | Msa0184820:CDS |
| GATAGAATGTATGAAATAAC+AGG | 0.330341 | 1_4:+74454501 | None:intergenic |
| ATGATGATGATGTTGATTTC+GGG | 0.336647 | 1_4:-74454707 | Msa0184820:CDS |
| CCAACAACAATGATGATAAC+AGG | 0.357092 | 1_4:+74457177 | None:intergenic |
| GTTTATCCATGTTCTCCTTC+CGG | 0.357858 | 1_4:+74454829 | None:intergenic |
| TATAGGACCTTGACTTCATT+TGG | 0.361838 | 1_4:-74454572 | Msa0184820:three_prime_UTR |
| ATATTCACATGGTCTGCTTC+TGG | 0.363085 | 1_4:-74456268 | Msa0184820:CDS |
| GAGTGAGTCTATGAAGAAAT+TGG | 0.370198 | 1_4:-74457244 | Msa0184820:CDS |
| GAAGTCAAAATTCCACCATT+GGG | 0.397466 | 1_4:+74456814 | None:intergenic |
| TACAGTAATTTAAGATCAGC+TGG | 0.416370 | 1_4:-74455115 | Msa0184820:CDS |
| ATCATTGTTGTTGGAATGGC+AGG | 0.426570 | 1_4:-74457168 | Msa0184820:intron |
| GTTTCTGCAGTTACTGGTGC+TGG | 0.428710 | 1_4:-74455091 | Msa0184820:CDS |
| TTCCATGTATTCCTCTGCAC+TGG | 0.431616 | 1_4:+74455039 | None:intergenic |
| GAAATAACAGGGCAATAAAT+CGG | 0.435791 | 1_4:+74454513 | None:intergenic |
| GGATGAAGAGGATGAGGAAA+TGG | 0.438782 | 1_4:-74454730 | Msa0184820:CDS |
| ATACTCATCTGTCAAACATC+AGG | 0.441997 | 1_4:-74456948 | Msa0184820:CDS |
| TTTAACTCAGAGCCTTTCTC+TGG | 0.457020 | 1_4:-74455152 | Msa0184820:CDS |
| AAACTTAACCTCATCGAACT+TGG | 0.460043 | 1_4:+74456774 | None:intergenic |
| CTCATTTGTGTTAAGGGAGT+GGG | 0.461516 | 1_4:-74457002 | Msa0184820:intron |
| ATGAAGAAATTGGACATTGA+AGG | 0.465533 | 1_4:-74457234 | Msa0184820:CDS |
| AAAACAGATACTAGATATAT+GGG | 0.466514 | 1_4:+74454356 | None:intergenic |
| GGACGAGGATGAAGAGGATG+AGG | 0.467374 | 1_4:-74454736 | Msa0184820:CDS |
| CACACACACGCGAGCTCTCT+CGG | 0.468404 | 1_4:-74457678 | Msa0184820:five_prime_UTR |
| ACAACATGAGTTTGCCTTGG+AGG | 0.468476 | 1_4:-74456071 | Msa0184820:intron |
| AAATTCCACCATTGGGGCCA+AGG | 0.471975 | 1_4:+74456821 | None:intergenic |
| TAGGGCTTACGGTGGTGATA+AGG | 0.472410 | 1_4:+74457603 | None:intergenic |
| AGGAGGGAGATGGAGAAATC+TGG | 0.473893 | 1_4:-74454804 | Msa0184820:CDS |
| GATCTGAACTTGCAGCTGCT+TGG | 0.481512 | 1_4:+74455191 | None:intergenic |
| GTCACCGGCTTCCATTTCCA+TGG | 0.485145 | 1_4:+74457516 | None:intergenic |
| TCACCGGCTTCCATTTCCAT+GGG | 0.489818 | 1_4:+74457517 | None:intergenic |
| ATATCAATGTTAGAAGCATA+TGG | 0.489870 | 1_4:+74456886 | None:intergenic |
| CAATTCAACCTTGGCCCCAA+TGG | 0.493147 | 1_4:-74456829 | Msa0184820:CDS |
| AGAAGTCAAAATTCCACCAT+TGG | 0.493187 | 1_4:+74456813 | None:intergenic |
| TCAGAGCCTTTCTCTGGCAC+TGG | 0.495072 | 1_4:-74455146 | Msa0184820:CDS |
| CTATCAGCATTATTCTCTCT+AGG | 0.500275 | 1_4:-74454483 | Msa0184820:three_prime_UTR |
| AGCACAACATGAGTTTGCCT+TGG | 0.507905 | 1_4:-74456074 | Msa0184820:CDS |
| AAGCATGTTGCTCATAAAAG+TGG | 0.519169 | 1_4:+74456162 | None:intergenic |
| AGGAGAACATGGATAAACTT+AGG | 0.522057 | 1_4:-74454824 | Msa0184820:CDS |
| TATGGAAGTGTCATGACAGC+CGG | 0.522098 | 1_4:+74456904 | None:intergenic |
| TCAACTTGACTATGTTCTTG+TGG | 0.522799 | 1_4:-74456311 | Msa0184820:CDS |
| ATTCATCCAGTGCCAGAGAA+AGG | 0.526358 | 1_4:+74455140 | None:intergenic |
| CGTTATCTGCGTCCATGTTG+CGG | 0.534923 | 1_4:+74457569 | None:intergenic |
| TTCAACCTTGGCCCCAATGG+TGG | 0.539374 | 1_4:-74456826 | Msa0184820:CDS |
| AGCCAGTGCAGAGGAATACA+TGG | 0.540021 | 1_4:-74455041 | Msa0184820:CDS |
| TATGTTCTTGTGGATACTCC+TGG | 0.544128 | 1_4:-74456301 | Msa0184820:CDS |
| GAAGTTAGGTGAACCAGAAG+AGG | 0.546699 | 1_4:+74457209 | None:intergenic |
| ATCGGAACTAGCGCTTGTAT+AGG | 0.552743 | 1_4:-74454589 | Msa0184820:three_prime_UTR |
| TATCATCATTGTTGTTGGAA+TGG | 0.555919 | 1_4:-74457172 | Msa0184820:CDS |
| AGAGGAGGACGAGGATGAAG+AGG | 0.556313 | 1_4:-74454742 | Msa0184820:CDS |
| TATGAACGTTTGGATTGCAT+CGG | 0.557691 | 1_4:-74454607 | Msa0184820:three_prime_UTR |
| GGATAAACTTAGGAGGGAGA+TGG | 0.557760 | 1_4:-74454814 | Msa0184820:CDS |
| GTCGTTCTCTTCTACACCAC+CGG | 0.560461 | 1_4:-74457640 | Msa0184820:five_prime_UTR |
| AGAAAGTACTTGAGAGTCAC+CGG | 0.565078 | 1_4:+74457501 | None:intergenic |
| ATCTGCGTCCATGTTGCGGA+GGG | 0.565997 | 1_4:+74457573 | None:intergenic |
| GACTACACTCATGCATAGGT+TGG | 0.567808 | 1_4:-74456977 | Msa0184820:CDS |
| GTTACTGGTGCTGGAATCGA+AGG | 0.568425 | 1_4:-74455082 | Msa0184820:CDS |
| GAAACTGTAGTGTTGAGCAC+TGG | 0.570041 | 1_4:-74454777 | Msa0184820:CDS |
| AGCTGTTGGAAGAAAATCGC+CGG | 0.572545 | 1_4:-74454848 | Msa0184820:CDS |
| AAATCGCCGGAAGGAGAACA+TGG | 0.572726 | 1_4:-74454835 | Msa0184820:CDS |
| TACTCATCTGTCAAACATCA+GGG | 0.573701 | 1_4:-74456947 | Msa0184820:CDS |
| ATGGAAGTGTCATGACAGCC+GGG | 0.578869 | 1_4:+74456905 | None:intergenic |
| GGCAACTACAGTGGGAAATG+TGG | 0.579709 | 1_4:+74456219 | None:intergenic |
| ATTTCTTCATAGACTCACTC+AGG | 0.587164 | 1_4:+74457247 | None:intergenic |
| GTGAATATCTCAATCTGACC+AGG | 0.587935 | 1_4:+74456283 | None:intergenic |
| AGAACATGGATAAACTTAGG+AGG | 0.588077 | 1_4:-74454821 | Msa0184820:CDS |
| GTTCATAAAATCACATCAGA+AGG | 0.589818 | 1_4:+74454623 | None:intergenic |
| TAAGGCGGCGCGAACAACTC+CGG | 0.589916 | 1_4:+74457621 | None:intergenic |
| GCATGTACCAAATGAAGTCA+AGG | 0.590004 | 1_4:+74454565 | None:intergenic |
| AATCAACACCCTCCGCAACA+TGG | 0.591565 | 1_4:-74457581 | Msa0184820:exon |
| AGATGAGGACGAAGATGAAG+AGG | 0.599265 | 1_4:-74454658 | Msa0184820:CDS |
| GTCATGAAGCAATTCAACCT+TGG | 0.600059 | 1_4:-74456838 | Msa0184820:CDS |
| AGGGAGATGGAGAAATCTGG+AGG | 0.604309 | 1_4:-74454801 | Msa0184820:CDS |
| AGGGTGTTGATTAGGGCTTA+CGG | 0.604717 | 1_4:+74457592 | None:intergenic |
| ACTACATAGGCAACTACAGT+GGG | 0.605400 | 1_4:+74456211 | None:intergenic |
| ACGAGGTGTATCAACTACAT+AGG | 0.606135 | 1_4:+74456198 | None:intergenic |
| ACGTGAAGAGAAACAGCTGT+TGG | 0.606507 | 1_4:-74454862 | Msa0184820:CDS |
| GAACATGGATAAACTTAGGA+GGG | 0.606999 | 1_4:-74454820 | Msa0184820:CDS |
| TTATGTGATGAATCTCGACC+CGG | 0.607451 | 1_4:-74456923 | Msa0184820:CDS |
| GAGGTAACCTTGTCTTATAG+AGG | 0.608238 | 1_4:+74456125 | None:intergenic |
| CAAAATCAACAATACCTCCA+AGG | 0.609268 | 1_4:+74456057 | None:intergenic |
| GGCTTACGGTGGTGATAAGG+CGG | 0.619827 | 1_4:+74457606 | None:intergenic |
| TTGTTGAATGCTAAGATGAG+AGG | 0.620285 | 1_4:+74456106 | None:intergenic |
| AACTACAGTGGGAAATGTGG+AGG | 0.621918 | 1_4:+74456222 | None:intergenic |
| ATGTTGCTCATAAAAGTGGT+AGG | 0.622477 | 1_4:+74456166 | None:intergenic |
| AGCTGTTGAAGCCAGTGCAG+AGG | 0.624332 | 1_4:-74455050 | Msa0184820:CDS |
| CGGGACATACACTGAAGATG+AGG | 0.626150 | 1_4:-74454688 | Msa0184820:CDS |
| CACCGGCTTCCATTTCCATG+GGG | 0.630823 | 1_4:+74457518 | None:intergenic |
| TATCTGCGTCCATGTTGCGG+AGG | 0.634849 | 1_4:+74457572 | None:intergenic |
| GGAAGACTACACTCATGCAT+AGG | 0.648368 | 1_4:-74456981 | Msa0184820:CDS |
| AGATGAGGATGCTATAGATG+AGG | 0.654047 | 1_4:-74454673 | Msa0184820:CDS |
| ACCGGCTTCCATTTCCATGG+GGG | 0.657686 | 1_4:+74457519 | None:intergenic |
| GTTTGCAACCAAGTTCGATG+AGG | 0.658878 | 1_4:-74456782 | Msa0184820:intron |
| ACTAGTAGGAGTAATTGCAA+AGG | 0.660440 | 1_4:-74454437 | Msa0184820:three_prime_UTR |
| GTTGGAAGAAAATCGCCGGA+AGG | 0.664727 | 1_4:-74454844 | Msa0184820:CDS |
| AAGTCAAAATTCCACCATTG+GGG | 0.670613 | 1_4:+74456815 | None:intergenic |
| GGTGTAGAAGAGAACGACGC+CGG | 0.671853 | 1_4:+74457645 | None:intergenic |
| CAGAGTCATTCGTACTACGA+AGG | 0.677196 | 1_4:+74454536 | None:intergenic |
| AACTACATAGGCAACTACAG+TGG | 0.686317 | 1_4:+74456210 | None:intergenic |
| GTAGTATCCTCTATAAGACA+AGG | 0.691493 | 1_4:-74456132 | Msa0184820:CDS |
| GGCGGCGCGAACAACTCCGG+TGG | 0.695334 | 1_4:+74457624 | None:intergenic |
| TCTCATCTTAGCATTCAACA+AGG | 0.708282 | 1_4:-74456104 | Msa0184820:CDS |
| ATAGAATGTATGAAATAACA+GGG | 0.711420 | 1_4:+74454502 | None:intergenic |
| ACTCATCTGTCAAACATCAG+GGG | 0.713135 | 1_4:-74456946 | Msa0184820:CDS |
| GTGTTGATTAGGGCTTACGG+TGG | 0.717038 | 1_4:+74457595 | None:intergenic |
| GTCAGATTGAGATATTCACA+TGG | 0.740453 | 1_4:-74456279 | Msa0184820:CDS |
| CTCTCTCGGAGACAACACGC+CGG | 0.774524 | 1_4:-74457664 | Msa0184820:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCAAACAAAATTTATTT+AGG | - | chr1_4:74454515-74454534 | Msa0184820:three_prime_UTR | 10.0% |
| !! | AATATATATATATATATTGC+TGG | - | chr1_4:74455240-74455259 | Msa0184820:intron | 10.0% |
| !!! | TGTTTAAGTTATTATTTTAT+AGG | - | chr1_4:74456503-74456522 | Msa0184820:intron | 10.0% |
| !!! | TACAAAAAAAAACGTTTTTA+GGG | + | chr1_4:74454608-74454627 | None:intergenic | 15.0% |
| !!! | ATACAAAAAAAAACGTTTTT+AGG | + | chr1_4:74454609-74454628 | None:intergenic | 15.0% |
| !! | ATAAATAAATCATGACATTT+GGG | - | chr1_4:74456143-74456162 | Msa0184820:CDS | 15.0% |
| !!! | ATTTTAACATTTCATTCAAT+TGG | - | chr1_4:74456377-74456396 | Msa0184820:intron | 15.0% |
| !! | ATAATAACTTAAACATGAAA+GGG | + | chr1_4:74456498-74456517 | None:intergenic | 15.0% |
| !! | AATAATAACTTAAACATGAA+AGG | + | chr1_4:74456499-74456518 | None:intergenic | 15.0% |
| !!! | TAATTTGAAATTGTGAATCA+TGG | - | chr1_4:74454648-74454667 | Msa0184820:CDS | 20.0% |
| !! | AATATAACTCATTTGTGTTA+AGG | - | chr1_4:74454951-74454970 | Msa0184820:intron | 20.0% |
| !! | ATATAACTCATTTGTGTTAA+GGG | - | chr1_4:74454952-74454971 | Msa0184820:intron | 20.0% |
| !!! | TATATATATATTGCTGGTTA+TGG | - | chr1_4:74455246-74455265 | Msa0184820:intron | 20.0% |
| !!! | GTTTTACTTATATATGCATT+CGG | - | chr1_4:74455290-74455309 | Msa0184820:intron | 20.0% |
| !! | GCATAAAAAAAAATTAAGCA+GGG | + | chr1_4:74455361-74455380 | None:intergenic | 20.0% |
| !!! | TGCTTAATTTTTTTTTATGC+CGG | - | chr1_4:74455361-74455380 | Msa0184820:intron | 20.0% |
| !! | CATGAAAACAAATAAATTGT+TGG | + | chr1_4:74455524-74455543 | None:intergenic | 20.0% |
| !!! | TATCATTTTTATAGCTTTCA+AGG | + | chr1_4:74455979-74455998 | None:intergenic | 20.0% |
| !!! | TCTAATTGATAGTTTTATCT+CGG | - | chr1_4:74456058-74456077 | Msa0184820:intron | 20.0% |
| !! | GTTCAAATTAAGTACTTAAA+AGG | + | chr1_4:74456112-74456131 | None:intergenic | 20.0% |
| !! | GATAAATAAATCATGACATT+TGG | - | chr1_4:74456142-74456161 | Msa0184820:CDS | 20.0% |
| !!! | AACTTTTAAGTTTAACAGAT+TGG | - | chr1_4:74456432-74456451 | Msa0184820:intron | 20.0% |
| !!! | ACTTTTAAGTTTAACAGATT+GGG | - | chr1_4:74456433-74456452 | Msa0184820:intron | 20.0% |
| !!! | AATTTGTTTTGTTTATCTAG+TGG | - | chr1_4:74456726-74456745 | Msa0184820:intron | 20.0% |
| !! | CAAAATCAAAAGTGAAATAA+TGG | + | chr1_4:74456995-74457014 | None:intergenic | 20.0% |
| !!! | TTTTGATTTTGCATTTAGTT+AGG | - | chr1_4:74457004-74457023 | Msa0184820:intron | 20.0% |
| !! | ATAGAATGTATGAAATAACA+GGG | + | chr1_4:74457461-74457480 | None:intergenic | 20.0% |
| !! | TACTAGTATAAAAAACATCT+AGG | + | chr1_4:74457510-74457529 | None:intergenic | 20.0% |
| !!! | TAGATGTTTTTTATACTAGT+AGG | - | chr1_4:74457509-74457528 | Msa0184820:intron | 20.0% |
| !! | AAAACAGATACTAGATATAT+GGG | + | chr1_4:74457607-74457626 | None:intergenic | 20.0% |
| ! | GGAAAAAAACAAACAAAAAG+AGG | - | chr1_4:74454689-74454708 | Msa0184820:CDS | 25.0% |
| !! | ATATCAATGTTAGAAGCATA+TGG | + | chr1_4:74455077-74455096 | None:intergenic | 25.0% |
| ! | ATTATACTGTACATGAGTTT+AGG | + | chr1_4:74455223-74455242 | None:intergenic | 25.0% |
| ! | GGCATAAAAAAAAATTAAGC+AGG | + | chr1_4:74455362-74455381 | None:intergenic | 25.0% |
| !!! | GCTTAATTTTTTTTTATGCC+GGG | - | chr1_4:74455362-74455381 | Msa0184820:intron | 25.0% |
| ! | TATACCAATAGCTTAATTAG+AGG | + | chr1_4:74455430-74455449 | None:intergenic | 25.0% |
| !!! | AAGGTGTTTGATTAATCTTT+TGG | + | chr1_4:74456198-74456217 | None:intergenic | 25.0% |
| ! | AAGTCTAACTCTTAATTCAT+AGG | + | chr1_4:74456255-74456274 | None:intergenic | 25.0% |
| !!! | CTTTTAAGTTTAACAGATTG+GGG | - | chr1_4:74456434-74456453 | Msa0184820:intron | 25.0% |
| ! | AACAAAACAAATTCGACAAA+AGG | + | chr1_4:74456719-74456738 | None:intergenic | 25.0% |
| ! | GATAGAATGTATGAAATAAC+AGG | + | chr1_4:74457462-74457481 | None:intergenic | 25.0% |
| ! | CAAAACAGATACTAGATATA+TGG | + | chr1_4:74457608-74457627 | None:intergenic | 25.0% |
| !!! | ATCTAGTATCTGTTTTGTTT+AGG | - | chr1_4:74457611-74457630 | Msa0184820:five_prime_UTR | 25.0% |
| !!! | TCTAGTATCTGTTTTGTTTA+GGG | - | chr1_4:74457612-74457631 | Msa0184820:five_prime_UTR | 25.0% |
| GTAAAGTGAAAGTGAATAAG+CGG | + | chr1_4:74454494-74454513 | None:intergenic | 30.0% | |
| TGAAATTGTGAATCATGGAA+TGG | - | chr1_4:74454653-74454672 | Msa0184820:CDS | 30.0% | |
| !!! | TGGAATGGTTTTTGTTTTCA+AGG | - | chr1_4:74454668-74454687 | Msa0184820:CDS | 30.0% |
| ATGAAGAAATTGGACATTGA+AGG | - | chr1_4:74454726-74454745 | Msa0184820:CDS | 30.0% | |
| !!! | ACAGGTTTTCTTTTGAAGTT+AGG | + | chr1_4:74454768-74454787 | None:intergenic | 30.0% |
| ! | TATCATCATTGTTGTTGGAA+TGG | - | chr1_4:74454788-74454807 | Msa0184820:CDS | 30.0% |
| CAATGAGTTACACAAAATCA+CGG | - | chr1_4:74454862-74454881 | Msa0184820:CDS | 30.0% | |
| GAAACTATATTGTGCATGTT+TGG | + | chr1_4:74454899-74454918 | None:intergenic | 30.0% | |
| TTACTTATATATGCATTCGG+TGG | - | chr1_4:74455293-74455312 | Msa0184820:intron | 30.0% | |
| CTAGTATCAATGATATCAAG+AGG | + | chr1_4:74455328-74455347 | None:intergenic | 30.0% | |
| CATAAGATCAAACAAACTCA+AGG | + | chr1_4:74455395-74455414 | None:intergenic | 30.0% | |
| TTGTCCTCTAATTAAGCTAT+TGG | - | chr1_4:74455423-74455442 | Msa0184820:intron | 30.0% | |
| GGAACAAAAGTAAAACACAT+CGG | + | chr1_4:74455547-74455566 | None:intergenic | 30.0% | |
| TGCATATAAGTTCTGTAGAT+GGG | + | chr1_4:74455568-74455587 | None:intergenic | 30.0% | |
| TTGCATATAAGTTCTGTAGA+TGG | + | chr1_4:74455569-74455588 | None:intergenic | 30.0% | |
| ACAGAAATTACCTGAAATTG+AGG | + | chr1_4:74455611-74455630 | None:intergenic | 30.0% | |
| AACTATCAATTAGATCTCAC+AGG | + | chr1_4:74456052-74456071 | None:intergenic | 30.0% | |
| !!! | TTGATTAATCTTTTGGTGTC+AGG | + | chr1_4:74456191-74456210 | None:intergenic | 30.0% |
| TTATATGTGCAATTAGAGAG+AGG | + | chr1_4:74456327-74456346 | None:intergenic | 30.0% | |
| TTAAAAGATCTTATGCTTCG+TGG | - | chr1_4:74456354-74456373 | Msa0184820:intron | 30.0% | |
| GATTCAGCTCAAATATACAA+AGG | + | chr1_4:74456572-74456591 | None:intergenic | 30.0% | |
| AAACAAATTCGACAAAAGGA+AGG | + | chr1_4:74456715-74456734 | None:intergenic | 30.0% | |
| ! | TACAGTAATTTAAGATCAGC+TGG | - | chr1_4:74456845-74456864 | Msa0184820:CDS | 30.0% |
| !! | GATGATGATGATGTTGATTT+CGG | - | chr1_4:74457252-74457271 | Msa0184820:CDS | 30.0% |
| !! | ATGATGATGATGTTGATTTC+GGG | - | chr1_4:74457253-74457272 | Msa0184820:CDS | 30.0% |
| GTTCATAAAATCACATCAGA+AGG | + | chr1_4:74457340-74457359 | None:intergenic | 30.0% | |
| ! | GATGTGATTTTATGAACGTT+TGG | - | chr1_4:74457343-74457362 | Msa0184820:intron | 30.0% |
| GAAATAACAGGGCAATAAAT+CGG | + | chr1_4:74457450-74457469 | None:intergenic | 30.0% | |
| ! | ATTGTGAGATTTTCAAACTG+CGG | + | chr1_4:74457688-74457707 | None:intergenic | 30.0% |
| ATTTCTTCATAGACTCACTC+AGG | + | chr1_4:74454716-74454735 | None:intergenic | 35.0% | |
| GAGTGAGTCTATGAAGAAAT+TGG | - | chr1_4:74454716-74454735 | Msa0184820:CDS | 35.0% | |
| CCAACAACAATGATGATAAC+AGG | + | chr1_4:74454786-74454805 | None:intergenic | 35.0% | |
| CCTGTTATCATCATTGTTGT+TGG | - | chr1_4:74454783-74454802 | Msa0184820:CDS | 35.0% | |
| !! | ACGTAGTAGTTTTGCTGATT+TGG | - | chr1_4:74454928-74454947 | Msa0184820:intron | 35.0% |
| ATACTCATCTGTCAAACATC+AGG | - | chr1_4:74455012-74455031 | Msa0184820:intron | 35.0% | |
| TACTCATCTGTCAAACATCA+GGG | - | chr1_4:74455013-74455032 | Msa0184820:intron | 35.0% | |
| AAGTCAAAATTCCACCATTG+GGG | + | chr1_4:74455148-74455167 | None:intergenic | 35.0% | |
| GAAGTCAAAATTCCACCATT+GGG | + | chr1_4:74455149-74455168 | None:intergenic | 35.0% | |
| AGAAGTCAAAATTCCACCAT+TGG | + | chr1_4:74455150-74455169 | None:intergenic | 35.0% | |
| AAACTTAACCTCATCGAACT+TGG | + | chr1_4:74455189-74455208 | None:intergenic | 35.0% | |
| GTTTACATTGTCATTGTCAG+TGG | - | chr1_4:74455467-74455486 | Msa0184820:intron | 35.0% | |
| TGTTTATGCTCCTCAATTTC+AGG | - | chr1_4:74455598-74455617 | Msa0184820:intron | 35.0% | |
| TCAACTTGACTATGTTCTTG+TGG | - | chr1_4:74455649-74455668 | Msa0184820:intron | 35.0% | |
| GTCAGATTGAGATATTCACA+TGG | - | chr1_4:74455681-74455700 | Msa0184820:intron | 35.0% | |
| ATGTTGCTCATAAAAGTGGT+AGG | + | chr1_4:74455797-74455816 | None:intergenic | 35.0% | |
| AAGCATGTTGCTCATAAAAG+TGG | + | chr1_4:74455801-74455820 | None:intergenic | 35.0% | |
| GTAGTATCCTCTATAAGACA+AGG | - | chr1_4:74455828-74455847 | Msa0184820:intron | 35.0% | |
| TTGTTGAATGCTAAGATGAG+AGG | + | chr1_4:74455857-74455876 | None:intergenic | 35.0% | |
| TCTCATCTTAGCATTCAACA+AGG | - | chr1_4:74455856-74455875 | Msa0184820:intron | 35.0% | |
| CAAAATCAACAATACCTCCA+AGG | + | chr1_4:74455906-74455925 | None:intergenic | 35.0% | |
| !! | GTCTTTTAACTCACTACAAC+AGG | - | chr1_4:74456017-74456036 | Msa0184820:intron | 35.0% |
| !! | GAACTTGATAGCTGTTTTCA+AGG | + | chr1_4:74456217-74456236 | None:intergenic | 35.0% |
| GAAAACAGCTATCAAGTTCA+TGG | - | chr1_4:74456218-74456237 | Msa0184820:CDS | 35.0% | |
| TTTAACAGATTGGGGTGAAA+TGG | - | chr1_4:74456442-74456461 | Msa0184820:intron | 35.0% | |
| TTAACAGATTGGGGTGAAAT+GGG | - | chr1_4:74456443-74456462 | Msa0184820:intron | 35.0% | |
| ! | AACCATTTTCCTGTAGTTTC+AGG | - | chr1_4:74456531-74456550 | Msa0184820:intron | 35.0% |
| ! | ACCATTTTCCTGTAGTTTCA+GGG | - | chr1_4:74456532-74456551 | Msa0184820:intron | 35.0% |
| GCTCAAATATACAAAGGAAG+AGG | + | chr1_4:74456566-74456585 | None:intergenic | 35.0% | |
| TCTGTTCAACAGAATTGACT+GGG | + | chr1_4:74456647-74456666 | None:intergenic | 35.0% | |
| TTCTGTTCAACAGAATTGAC+TGG | + | chr1_4:74456648-74456667 | None:intergenic | 35.0% | |
| !! | CTAGTGGATGAAAGATTTTG+AGG | - | chr1_4:74456742-74456761 | Msa0184820:intron | 35.0% |
| CAAGAGCAGTTAATACTTGT+AGG | + | chr1_4:74456948-74456967 | None:intergenic | 35.0% | |
| ! | GTTAGGTTGTATGTCTTTGA+TGG | - | chr1_4:74457021-74457040 | Msa0184820:intron | 35.0% |
| AGGAGAACATGGATAAACTT+AGG | - | chr1_4:74457136-74457155 | Msa0184820:intron | 35.0% | |
| AGAACATGGATAAACTTAGG+AGG | - | chr1_4:74457139-74457158 | Msa0184820:intron | 35.0% | |
| GAACATGGATAAACTTAGGA+GGG | - | chr1_4:74457140-74457159 | Msa0184820:intron | 35.0% | |
| !! | CACTGGTTTGAAAAACAAAG+AGG | - | chr1_4:74457200-74457219 | Msa0184820:CDS | 35.0% |
| TGGTTTGAAAAACAAAGAGG+AGG | - | chr1_4:74457203-74457222 | Msa0184820:CDS | 35.0% | |
| TATGAACGTTTGGATTGCAT+CGG | - | chr1_4:74457353-74457372 | Msa0184820:intron | 35.0% | |
| TATAGGACCTTGACTTCATT+TGG | - | chr1_4:74457388-74457407 | Msa0184820:intron | 35.0% | |
| CTATCAGCATTATTCTCTCT+AGG | - | chr1_4:74457477-74457496 | Msa0184820:intron | 35.0% | |
| ACTAGTAGGAGTAATTGCAA+AGG | - | chr1_4:74457523-74457542 | Msa0184820:CDS | 35.0% | |
| ATTTGCACAAAAATCGAGCA+TGG | + | chr1_4:74457552-74457571 | None:intergenic | 35.0% | |
| ! | CTCGATTTTTGTGCAAATTG+AGG | - | chr1_4:74457554-74457573 | Msa0184820:CDS | 35.0% |
| !! | AGAAAGTACTTGAGAGTCAC+CGG | + | chr1_4:74454462-74454481 | None:intergenic | 40.0% |
| ! | ATCATTGTTGTTGGAATGGC+AGG | - | chr1_4:74454792-74454811 | Msa0184820:CDS | 40.0% |
| ACTCATTTGTGTTAAGGGAG+TGG | - | chr1_4:74454957-74454976 | Msa0184820:intron | 40.0% | |
| CTCATTTGTGTTAAGGGAGT+GGG | - | chr1_4:74454958-74454977 | Msa0184820:intron | 40.0% | |
| ACTCATCTGTCAAACATCAG+GGG | - | chr1_4:74455014-74455033 | Msa0184820:intron | 40.0% | |
| TTATGTGATGAATCTCGACC+CGG | - | chr1_4:74455037-74455056 | Msa0184820:CDS | 40.0% | |
| GTCATGAAGCAATTCAACCT+TGG | - | chr1_4:74455122-74455141 | Msa0184820:CDS | 40.0% | |
| TATGTTCTTGTGGATACTCC+TGG | - | chr1_4:74455659-74455678 | Msa0184820:intron | 40.0% | |
| GTGAATATCTCAATCTGACC+AGG | + | chr1_4:74455680-74455699 | None:intergenic | 40.0% | |
| ATATTCACATGGTCTGCTTC+TGG | - | chr1_4:74455692-74455711 | Msa0184820:intron | 40.0% | |
| ACTACATAGGCAACTACAGT+GGG | + | chr1_4:74455752-74455771 | None:intergenic | 40.0% | |
| AACTACATAGGCAACTACAG+TGG | + | chr1_4:74455753-74455772 | None:intergenic | 40.0% | |
| ACGAGGTGTATCAACTACAT+AGG | + | chr1_4:74455765-74455784 | None:intergenic | 40.0% | |
| GAGGTAACCTTGTCTTATAG+AGG | + | chr1_4:74455838-74455857 | None:intergenic | 40.0% | |
| GGTGAAATGGGAAGCAATAT+TGG | - | chr1_4:74456455-74456474 | Msa0184820:intron | 40.0% | |
| ACCCTGAAACTACAGGAAAA+TGG | + | chr1_4:74456536-74456555 | None:intergenic | 40.0% | |
| TCCTGTAGTTTCAGGGTTTA+TGG | - | chr1_4:74456539-74456558 | Msa0184820:intron | 40.0% | |
| CCTGTAGTTTCAGGGTTTAT+GGG | - | chr1_4:74456540-74456559 | Msa0184820:intron | 40.0% | |
| CAACAGAATTGACTGGGTAT+TGG | + | chr1_4:74456641-74456660 | None:intergenic | 40.0% | |
| TTTAACTCAGAGCCTTTCTC+TGG | - | chr1_4:74456808-74456827 | Msa0184820:CDS | 40.0% | |
| GTTTATCCATGTTCTCCTTC+CGG | + | chr1_4:74457134-74457153 | None:intergenic | 40.0% | |
| AGATGAGGATGCTATAGATG+AGG | - | chr1_4:74457287-74457306 | Msa0184820:intron | 40.0% | |
| GCATGTACCAAATGAAGTCA+AGG | + | chr1_4:74457398-74457417 | None:intergenic | 40.0% | |
| ! | AGATTTTCAAACTGCGGATG+TGG | + | chr1_4:74457682-74457701 | None:intergenic | 40.0% |
| !! | AGGGTGTTGATTAGGGCTTA+CGG | + | chr1_4:74454371-74454390 | None:intergenic | 45.0% |
| AAGTGAATAAGCGGCGAGTT+TGG | + | chr1_4:74454485-74454504 | None:intergenic | 45.0% | |
| GACATTGAAGGTTCCTCTTC+TGG | - | chr1_4:74454738-74454757 | Msa0184820:CDS | 45.0% | |
| GAAGTTAGGTGAACCAGAAG+AGG | + | chr1_4:74454754-74454773 | None:intergenic | 45.0% | |
| GGAAGACTACACTCATGCAT+AGG | - | chr1_4:74454979-74454998 | Msa0184820:intron | 45.0% | |
| GACTACACTCATGCATAGGT+TGG | - | chr1_4:74454983-74455002 | Msa0184820:intron | 45.0% | |
| !! | TATGGAAGTGTCATGACAGC+CGG | + | chr1_4:74455059-74455078 | None:intergenic | 45.0% |
| GTTTGCAACCAAGTTCGATG+AGG | - | chr1_4:74455178-74455197 | Msa0184820:CDS | 45.0% | |
| CAAACTCAAGGAAAGCTACC+CGG | + | chr1_4:74455383-74455402 | None:intergenic | 45.0% | |
| ! | CATTGTCAGTGGCTCGTTTT+AGG | - | chr1_4:74455478-74455497 | Msa0184820:intron | 45.0% |
| AACTACAGTGGGAAATGTGG+AGG | + | chr1_4:74455741-74455760 | None:intergenic | 45.0% | |
| AGCACAACATGAGTTTGCCT+TGG | - | chr1_4:74455886-74455905 | Msa0184820:intron | 45.0% | |
| ACAACATGAGTTTGCCTTGG+AGG | - | chr1_4:74455889-74455908 | Msa0184820:intron | 45.0% | |
| CCCATAAACCCTGAAACTAC+AGG | + | chr1_4:74456543-74456562 | None:intergenic | 45.0% | |
| ATTCATCCAGTGCCAGAGAA+AGG | + | chr1_4:74456823-74456842 | None:intergenic | 45.0% | |
| TTCCATGTATTCCTCTGCAC+TGG | + | chr1_4:74456924-74456943 | None:intergenic | 45.0% | |
| ACGTGAAGAGAAACAGCTGT+TGG | - | chr1_4:74457098-74457117 | Msa0184820:intron | 45.0% | |
| AGCTGTTGGAAGAAAATCGC+CGG | - | chr1_4:74457112-74457131 | Msa0184820:intron | 45.0% | |
| GGATAAACTTAGGAGGGAGA+TGG | - | chr1_4:74457146-74457165 | Msa0184820:intron | 45.0% | |
| ! | GAAACTGTAGTGTTGAGCAC+TGG | - | chr1_4:74457183-74457202 | Msa0184820:CDS | 45.0% |
| GAAAAACAAAGAGGAGGACG+AGG | - | chr1_4:74457209-74457228 | Msa0184820:CDS | 45.0% | |
| GGATGAAGAGGATGAGGAAA+TGG | - | chr1_4:74457230-74457249 | Msa0184820:CDS | 45.0% | |
| AGATGAGGACGAAGATGAAG+AGG | - | chr1_4:74457302-74457321 | Msa0184820:intron | 45.0% | |
| ATCGGAACTAGCGCTTGTAT+AGG | - | chr1_4:74457371-74457390 | Msa0184820:intron | 45.0% | |
| CAGAGTCATTCGTACTACGA+AGG | + | chr1_4:74457427-74457446 | None:intergenic | 45.0% | |
| GTCGTTCTCTTCTACACCAC+CGG | - | chr1_4:74454320-74454339 | Msa0184820:three_prime_UTR | 50.0% | |
| TAGGGCTTACGGTGGTGATA+AGG | + | chr1_4:74454360-74454379 | None:intergenic | 50.0% | |
| !! | GTGTTGATTAGGGCTTACGG+TGG | + | chr1_4:74454368-74454387 | None:intergenic | 50.0% |
| !! | GTTGCGGAGGGTGTTGATTA+GGG | + | chr1_4:74454378-74454397 | None:intergenic | 50.0% |
| !! | TGTTGCGGAGGGTGTTGATT+AGG | + | chr1_4:74454379-74454398 | None:intergenic | 50.0% |
| AATCAACACCCTCCGCAACA+TGG | - | chr1_4:74454379-74454398 | Msa0184820:three_prime_UTR | 50.0% | |
| CGTTATCTGCGTCCATGTTG+CGG | + | chr1_4:74454394-74454413 | None:intergenic | 50.0% | |
| !! | ATTTCCATGGGGGTGTCTTC+GGG | + | chr1_4:74454434-74454453 | None:intergenic | 50.0% |
| !! | CATTTCCATGGGGGTGTCTT+CGG | + | chr1_4:74454435-74454454 | None:intergenic | 50.0% |
| !! | TCACCGGCTTCCATTTCCAT+GGG | + | chr1_4:74454446-74454465 | None:intergenic | 50.0% |
| GAGTAACGCTGTGTCTATCG+TGG | + | chr1_4:74454572-74454591 | None:intergenic | 50.0% | |
| !! | ATGGAAGTGTCATGACAGCC+GGG | + | chr1_4:74455058-74455077 | None:intergenic | 50.0% |
| CAATTCAACCTTGGCCCCAA+TGG | - | chr1_4:74455131-74455150 | Msa0184820:CDS | 50.0% | |
| AAATTCCACCATTGGGGCCA+AGG | + | chr1_4:74455142-74455161 | None:intergenic | 50.0% | |
| GGCAACTACAGTGGGAAATG+TGG | + | chr1_4:74455744-74455763 | None:intergenic | 50.0% | |
| ! | GTGGTAGGATTTTCTGCACG+AGG | + | chr1_4:74455782-74455801 | None:intergenic | 50.0% |
| TTTGGGCTGTGTCTGTGATG+AGG | - | chr1_4:74456160-74456179 | Msa0184820:CDS | 50.0% | |
| GCTGTGTCTGTGATGAGGTT+TGG | - | chr1_4:74456165-74456184 | Msa0184820:CDS | 50.0% | |
| GATCTGAACTTGCAGCTGCT+TGG | + | chr1_4:74456772-74456791 | None:intergenic | 50.0% | |
| GCTGGAGTTTCTGCAGTTAC+TGG | - | chr1_4:74456863-74456882 | Msa0184820:CDS | 50.0% | |
| GTTTCTGCAGTTACTGGTGC+TGG | - | chr1_4:74456869-74456888 | Msa0184820:CDS | 50.0% | |
| ! | GTTACTGGTGCTGGAATCGA+AGG | - | chr1_4:74456878-74456897 | Msa0184820:CDS | 50.0% |
| AGCCAGTGCAGAGGAATACA+TGG | - | chr1_4:74456919-74456938 | Msa0184820:CDS | 50.0% | |
| GTTGGAAGAAAATCGCCGGA+AGG | - | chr1_4:74457116-74457135 | Msa0184820:intron | 50.0% | |
| AAATCGCCGGAAGGAGAACA+TGG | - | chr1_4:74457125-74457144 | Msa0184820:intron | 50.0% | |
| AGGAGGGAGATGGAGAAATC+TGG | - | chr1_4:74457156-74457175 | Msa0184820:intron | 50.0% | |
| AGGGAGATGGAGAAATCTGG+AGG | - | chr1_4:74457159-74457178 | Msa0184820:intron | 50.0% | |
| CGGGACATACACTGAAGATG+AGG | - | chr1_4:74457272-74457291 | Msa0184820:CDS | 50.0% | |
| GGTGTAGAAGAGAACGACGC+CGG | + | chr1_4:74454318-74454337 | None:intergenic | 55.0% | |
| GGCTTACGGTGGTGATAAGG+CGG | + | chr1_4:74454357-74454376 | None:intergenic | 55.0% | |
| ATCTGCGTCCATGTTGCGGA+GGG | + | chr1_4:74454390-74454409 | None:intergenic | 55.0% | |
| TATCTGCGTCCATGTTGCGG+AGG | + | chr1_4:74454391-74454410 | None:intergenic | 55.0% | |
| !! | TTTCCATGGGGGTGTCTTCG+GGG | + | chr1_4:74454433-74454452 | None:intergenic | 55.0% |
| CGAAGACACCCCCATGGAAA+TGG | - | chr1_4:74454433-74454452 | Msa0184820:three_prime_UTR | 55.0% | |
| ACCCCCATGGAAATGGAAGC+CGG | - | chr1_4:74454440-74454459 | Msa0184820:three_prime_UTR | 55.0% | |
| ! | ACCGGCTTCCATTTCCATGG+GGG | + | chr1_4:74454444-74454463 | None:intergenic | 55.0% |
| !! | CACCGGCTTCCATTTCCATG+GGG | + | chr1_4:74454445-74454464 | None:intergenic | 55.0% |
| !! | GTCACCGGCTTCCATTTCCA+TGG | + | chr1_4:74454447-74454466 | None:intergenic | 55.0% |
| GTTGGAATGGCAGGTCAGTC+AGG | - | chr1_4:74454801-74454820 | Msa0184820:CDS | 55.0% | |
| TTCAACCTTGGCCCCAATGG+TGG | - | chr1_4:74455134-74455153 | Msa0184820:CDS | 55.0% | |
| TCAGAGCCTTTCTCTGGCAC+TGG | - | chr1_4:74456814-74456833 | Msa0184820:CDS | 55.0% | |
| AGCTGTTGAAGCCAGTGCAG+AGG | - | chr1_4:74456910-74456929 | Msa0184820:CDS | 55.0% | |
| AGAGGAGGACGAGGATGAAG+AGG | - | chr1_4:74457218-74457237 | Msa0184820:CDS | 55.0% | |
| GGACGAGGATGAAGAGGATG+AGG | - | chr1_4:74457224-74457243 | Msa0184820:CDS | 55.0% | |
| CACACACACGCGAGCTCTCT+CGG | - | chr1_4:74454282-74454301 | Msa0184820:three_prime_UTR | 60.0% | |
| CTCTCTCGGAGACAACACGC+CGG | - | chr1_4:74454296-74454315 | Msa0184820:three_prime_UTR | 60.0% | |
| TAAGGCGGCGCGAACAACTC+CGG | + | chr1_4:74454342-74454361 | None:intergenic | 60.0% | |
| TAACCCCGAAGACACCCCCA+TGG | - | chr1_4:74454427-74454446 | Msa0184820:three_prime_UTR | 60.0% | |
| GGCGGCGCGAACAACTCCGG+TGG | + | chr1_4:74454339-74454358 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 74454256 | 74457726 | 74454256 | ID=Msa0184820;Name=Msa0184820 |
| chr1_4 | mRNA | 74454256 | 74457726 | 74454256 | ID=Msa0184820-mRNA-1;Parent=Msa0184820;Name=Msa0184820-mRNA-1;_AED=0.08;_eAED=0.08;_QI=142|1|1|1|1|1|6|382|395 |
| chr1_4 | exon | 74454256 | 74454902 | 74454256 | ID=Msa0184820-mRNA-1:exon:25419;Parent=Msa0184820-mRNA-1 |
| chr1_4 | exon | 74455031 | 74455236 | 74455031 | ID=Msa0184820-mRNA-1:exon:25418;Parent=Msa0184820-mRNA-1 |
| chr1_4 | exon | 74456072 | 74456362 | 74456072 | ID=Msa0184820-mRNA-1:exon:25417;Parent=Msa0184820-mRNA-1 |
| chr1_4 | exon | 74456783 | 74457009 | 74456783 | ID=Msa0184820-mRNA-1:exon:25416;Parent=Msa0184820-mRNA-1 |
| chr1_4 | exon | 74457169 | 74457292 | 74457169 | ID=Msa0184820-mRNA-1:exon:25415;Parent=Msa0184820-mRNA-1 |
| chr1_4 | exon | 74457510 | 74457726 | 74457510 | ID=Msa0184820-mRNA-1:exon:25414;Parent=Msa0184820-mRNA-1 |
| chr1_4 | five_prime_UTR | 74457585 | 74457726 | 74457585 | ID=Msa0184820-mRNA-1:five_prime_utr;Parent=Msa0184820-mRNA-1 |
| chr1_4 | CDS | 74457510 | 74457584 | 74457510 | ID=Msa0184820-mRNA-1:cds;Parent=Msa0184820-mRNA-1 |
| chr1_4 | CDS | 74457169 | 74457292 | 74457169 | ID=Msa0184820-mRNA-1:cds;Parent=Msa0184820-mRNA-1 |
| chr1_4 | CDS | 74456783 | 74457009 | 74456783 | ID=Msa0184820-mRNA-1:cds;Parent=Msa0184820-mRNA-1 |
| chr1_4 | CDS | 74456072 | 74456362 | 74456072 | ID=Msa0184820-mRNA-1:cds;Parent=Msa0184820-mRNA-1 |
| chr1_4 | CDS | 74455031 | 74455236 | 74455031 | ID=Msa0184820-mRNA-1:cds;Parent=Msa0184820-mRNA-1 |
| chr1_4 | CDS | 74454638 | 74454902 | 74454638 | ID=Msa0184820-mRNA-1:cds;Parent=Msa0184820-mRNA-1 |
| chr1_4 | three_prime_UTR | 74454256 | 74454637 | 74454256 | ID=Msa0184820-mRNA-1:three_prime_utr;Parent=Msa0184820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
