Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0133410 | sp|Q8W586|QQT2_ARATH | 72.571 | 350 | 95 | 1 | 19 | 368 | 4 | 352 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0133410 | G7IEN9 | 99.242 | 396 | 2 | 1 | 1 | 395 | 1 | 396 | 0.0 | 803 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa0133410 | 0.808211 | 3.461933e-50 | -8.615850e-47 |
| Msa0049750 | Msa0133410 | 0.812817 | 3.502803e-51 | -8.615850e-47 |
| Msa0076120 | Msa0133410 | 0.992754 | 3.120653e-195 | -8.615850e-47 |
| Msa0133410 | Msa0138020 | 0.804103 | 2.536800e-49 | -8.615850e-47 |
| Msa0133410 | Msa0181540 | 0.978758 | 1.683834e-146 | -8.615850e-47 |
| Msa0133410 | Msa0184820 | 0.995303 | 6.021836e-215 | -8.615850e-47 |
| Msa0133410 | Msa0184880 | 0.979254 | 1.444144e-147 | -8.615850e-47 |
| Msa0133410 | Msa0502090 | 0.823429 | 1.391694e-53 | -8.615850e-47 |
| Msa0133410 | Msa0791150 | 0.980306 | 6.473180e-150 | -8.615850e-47 |
| Msa0133410 | Msa1208380 | 0.819797 | 9.617383e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0133410 | MtrunA17_Chr1g0202821 | 99.242 | 396 | 2 | 1 | 1 | 395 | 1 | 396 | 0.0 | 803 |
| Msa0133410 | MtrunA17_Chr3g0119231 | 29.255 | 188 | 128 | 3 | 61 | 245 | 6 | 191 | 4.38e-19 | 86.3 |
| Msa0133410 | MtrunA17_Chr8g0364001 | 30.688 | 189 | 122 | 3 | 61 | 244 | 6 | 190 | 9.52e-19 | 85.9 |
| Msa0133410 | MtrunA17_Chr5g0442031 | 39.506 | 81 | 49 | 0 | 61 | 141 | 6 | 86 | 1.44e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0133410 | AT4G21800.2 | 72.571 | 350 | 95 | 1 | 19 | 368 | 4 | 352 | 0.0 | 531 |
| Msa0133410 | AT4G21800.1 | 72.571 | 350 | 95 | 1 | 19 | 368 | 4 | 352 | 0.0 | 531 |
| Msa0133410 | AT4G12790.4 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0133410 | AT4G12790.2 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0133410 | AT4G12790.6 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0133410 | AT4G12790.5 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0133410 | AT4G12790.1 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0133410 | AT4G12790.3 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0133410 | AT5G22370.2 | 27.957 | 186 | 131 | 3 | 61 | 244 | 6 | 190 | 1.60e-15 | 77.0 |
| Msa0133410 | AT5G22370.3 | 27.957 | 186 | 131 | 3 | 61 | 244 | 6 | 190 | 1.60e-15 | 77.0 |
| Msa0133410 | AT5G22370.1 | 27.957 | 186 | 131 | 3 | 61 | 244 | 6 | 190 | 1.60e-15 | 77.0 |
Find 112 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATTGAAGGTTCCTCTTC+TGG | 0.208586 | 1_3:-64672298 | Msa0133410:CDS |
| CAAAACAGATACTAGATATA+TGG | 0.237911 | 1_3:+64669431 | None:intergenic |
| TGTTGCGGAGGGTGTTGATT+AGG | 0.252127 | 1_3:+64672660 | None:intergenic |
| GCTGGAGTTTCTGCAGTTAC+TGG | 0.283127 | 1_3:-64670173 | Msa0133410:CDS |
| GATGATGATGATGTTGATTT+CGG | 0.300467 | 1_3:-64669784 | Msa0133410:CDS |
| GTTGCGGAGGGTGTTGATTA+GGG | 0.319457 | 1_3:+64672661 | None:intergenic |
| CCTGTTATCATCATTGTTGT+TGG | 0.328714 | 1_3:-64672253 | Msa0133410:CDS |
| GATAGAATGTATGAAATAAC+AGG | 0.330341 | 1_3:+64669577 | None:intergenic |
| ATGATGATGATGTTGATTTC+GGG | 0.336647 | 1_3:-64669783 | Msa0133410:CDS |
| CCAACAACAATGATGATAAC+AGG | 0.357092 | 1_3:+64672253 | None:intergenic |
| GTTTATCCATGTTCTCCTTC+CGG | 0.357858 | 1_3:+64669905 | None:intergenic |
| TATAGGACCTTGACTTCATT+TGG | 0.361838 | 1_3:-64669648 | Msa0133410:three_prime_UTR |
| ATATTCACATGGTCTGCTTC+TGG | 0.363085 | 1_3:-64671344 | Msa0133410:CDS |
| GAGTGAGTCTATGAAGAAAT+TGG | 0.370198 | 1_3:-64672320 | Msa0133410:CDS |
| GAAGTCAAAATTCCACCATT+GGG | 0.397466 | 1_3:+64671890 | None:intergenic |
| TACAGTAATTTAAGATCAGC+TGG | 0.416370 | 1_3:-64670191 | Msa0133410:CDS |
| ATCATTGTTGTTGGAATGGC+AGG | 0.426570 | 1_3:-64672244 | Msa0133410:intron |
| GTTTCTGCAGTTACTGGTGC+TGG | 0.428710 | 1_3:-64670167 | Msa0133410:CDS |
| TTCCATGTATTCCTCTGCAC+TGG | 0.431616 | 1_3:+64670115 | None:intergenic |
| GAAATAACAGGGCAATAAAT+CGG | 0.435791 | 1_3:+64669589 | None:intergenic |
| GGATGAAGAGGATGAGGAAA+TGG | 0.438782 | 1_3:-64669806 | Msa0133410:CDS |
| ATACTCATCTGTCAAACATC+AGG | 0.441997 | 1_3:-64672024 | Msa0133410:CDS |
| TTTAACTCAGAGCCTTTCTC+TGG | 0.457020 | 1_3:-64670228 | Msa0133410:CDS |
| AAACTTAACCTCATCGAACT+TGG | 0.460043 | 1_3:+64671850 | None:intergenic |
| CTCATTTGTGTTAAGGGAGT+GGG | 0.461516 | 1_3:-64672078 | Msa0133410:intron |
| ATGAAGAAATTGGACATTGA+AGG | 0.465533 | 1_3:-64672310 | Msa0133410:CDS |
| AAAACAGATACTAGATATAT+GGG | 0.466514 | 1_3:+64669432 | None:intergenic |
| GGACGAGGATGAAGAGGATG+AGG | 0.467374 | 1_3:-64669812 | Msa0133410:CDS |
| CACACACACGCGAGCTCTCT+CGG | 0.468404 | 1_3:-64672754 | Msa0133410:five_prime_UTR |
| ACAACATGAGTTTGCCTTGG+AGG | 0.468476 | 1_3:-64671147 | Msa0133410:intron |
| AAATTCCACCATTGGGGCCA+AGG | 0.471975 | 1_3:+64671897 | None:intergenic |
| TAGGGCTTACGGTGGTGATA+AGG | 0.472410 | 1_3:+64672679 | None:intergenic |
| AGGAGGGAGATGGAGAAATC+TGG | 0.473893 | 1_3:-64669880 | Msa0133410:CDS |
| GATCTGAACTTGCAGCTGCT+TGG | 0.481512 | 1_3:+64670267 | None:intergenic |
| GTCACCGGCTTCCATTTCCA+TGG | 0.485145 | 1_3:+64672592 | None:intergenic |
| TCACCGGCTTCCATTTCCAT+GGG | 0.489818 | 1_3:+64672593 | None:intergenic |
| ATATCAATGTTAGAAGCATA+TGG | 0.489870 | 1_3:+64671962 | None:intergenic |
| CAATTCAACCTTGGCCCCAA+TGG | 0.493147 | 1_3:-64671905 | Msa0133410:CDS |
| AGAAGTCAAAATTCCACCAT+TGG | 0.493187 | 1_3:+64671889 | None:intergenic |
| TCAGAGCCTTTCTCTGGCAC+TGG | 0.495072 | 1_3:-64670222 | Msa0133410:CDS |
| CTATCAGCATTATTCTCTCT+AGG | 0.500275 | 1_3:-64669559 | Msa0133410:three_prime_UTR |
| AGCACAACATGAGTTTGCCT+TGG | 0.507905 | 1_3:-64671150 | Msa0133410:CDS |
| AAGCATGTTGCTCATAAAAG+TGG | 0.519169 | 1_3:+64671238 | None:intergenic |
| AGGAGAACATGGATAAACTT+AGG | 0.522057 | 1_3:-64669900 | Msa0133410:CDS |
| TATGGAAGTGTCATGACAGC+CGG | 0.522098 | 1_3:+64671980 | None:intergenic |
| TCAACTTGACTATGTTCTTG+TGG | 0.522799 | 1_3:-64671387 | Msa0133410:CDS |
| ATTCATCCAGTGCCAGAGAA+AGG | 0.526358 | 1_3:+64670216 | None:intergenic |
| CGTTATCTGCGTCCATGTTG+CGG | 0.534923 | 1_3:+64672645 | None:intergenic |
| TTCAACCTTGGCCCCAATGG+TGG | 0.539374 | 1_3:-64671902 | Msa0133410:CDS |
| AGCCAGTGCAGAGGAATACA+TGG | 0.540021 | 1_3:-64670117 | Msa0133410:CDS |
| TATGTTCTTGTGGATACTCC+TGG | 0.544128 | 1_3:-64671377 | Msa0133410:CDS |
| GAAGTTAGGTGAACCAGAAG+AGG | 0.546699 | 1_3:+64672285 | None:intergenic |
| ATCGGAACTAGCGCTTGTAT+AGG | 0.552743 | 1_3:-64669665 | Msa0133410:three_prime_UTR |
| TATCATCATTGTTGTTGGAA+TGG | 0.555919 | 1_3:-64672248 | Msa0133410:CDS |
| AGAGGAGGACGAGGATGAAG+AGG | 0.556313 | 1_3:-64669818 | Msa0133410:CDS |
| TATGAACGTTTGGATTGCAT+CGG | 0.557691 | 1_3:-64669683 | Msa0133410:three_prime_UTR |
| GGATAAACTTAGGAGGGAGA+TGG | 0.557760 | 1_3:-64669890 | Msa0133410:CDS |
| GTCGTTCTCTTCTACACCAC+CGG | 0.560461 | 1_3:-64672716 | Msa0133410:five_prime_UTR |
| AGAAAGTACTTGAGAGTCAC+CGG | 0.565078 | 1_3:+64672577 | None:intergenic |
| ATCTGCGTCCATGTTGCGGA+GGG | 0.565997 | 1_3:+64672649 | None:intergenic |
| GACTACACTCATGCATAGGT+TGG | 0.567808 | 1_3:-64672053 | Msa0133410:CDS |
| GTTACTGGTGCTGGAATCGA+AGG | 0.568425 | 1_3:-64670158 | Msa0133410:CDS |
| GAAACTGTAGTGTTGAGCAC+TGG | 0.570041 | 1_3:-64669853 | Msa0133410:CDS |
| AGCTGTTGGAAGAAAATCGC+CGG | 0.572545 | 1_3:-64669924 | Msa0133410:CDS |
| AAATCGCCGGAAGGAGAACA+TGG | 0.572726 | 1_3:-64669911 | Msa0133410:CDS |
| TACTCATCTGTCAAACATCA+GGG | 0.573701 | 1_3:-64672023 | Msa0133410:CDS |
| ATGGAAGTGTCATGACAGCC+GGG | 0.578869 | 1_3:+64671981 | None:intergenic |
| GGCAACTACAGTGGGAAATG+TGG | 0.579709 | 1_3:+64671295 | None:intergenic |
| ATTTCTTCATAGACTCACTC+AGG | 0.587164 | 1_3:+64672323 | None:intergenic |
| GTGAATATCTCAATCTGACC+AGG | 0.587935 | 1_3:+64671359 | None:intergenic |
| AGAACATGGATAAACTTAGG+AGG | 0.588077 | 1_3:-64669897 | Msa0133410:CDS |
| GTTCATAAAATCACATCAGA+AGG | 0.589818 | 1_3:+64669699 | None:intergenic |
| TAAGGCGGCGCGAACAACTC+CGG | 0.589916 | 1_3:+64672697 | None:intergenic |
| GCATGTACCAAATGAAGTCA+AGG | 0.590004 | 1_3:+64669641 | None:intergenic |
| AATCAACACCCTCCGCAACA+TGG | 0.591565 | 1_3:-64672657 | Msa0133410:exon |
| AGATGAGGACGAAGATGAAG+AGG | 0.599265 | 1_3:-64669734 | Msa0133410:CDS |
| GTCATGAAGCAATTCAACCT+TGG | 0.600059 | 1_3:-64671914 | Msa0133410:CDS |
| AGGGAGATGGAGAAATCTGG+AGG | 0.604309 | 1_3:-64669877 | Msa0133410:CDS |
| AGGGTGTTGATTAGGGCTTA+CGG | 0.604717 | 1_3:+64672668 | None:intergenic |
| ACTACATAGGCAACTACAGT+GGG | 0.605400 | 1_3:+64671287 | None:intergenic |
| ACGAGGTGTATCAACTACAT+AGG | 0.606135 | 1_3:+64671274 | None:intergenic |
| ACGTGAAGAGAAACAGCTGT+TGG | 0.606507 | 1_3:-64669938 | Msa0133410:CDS |
| GAACATGGATAAACTTAGGA+GGG | 0.606999 | 1_3:-64669896 | Msa0133410:CDS |
| TTATGTGATGAATCTCGACC+CGG | 0.607451 | 1_3:-64671999 | Msa0133410:CDS |
| GAGGTAACCTTGTCTTATAG+AGG | 0.608238 | 1_3:+64671201 | None:intergenic |
| CAAAATCAACAATACCTCCA+AGG | 0.609268 | 1_3:+64671133 | None:intergenic |
| GGCTTACGGTGGTGATAAGG+CGG | 0.619827 | 1_3:+64672682 | None:intergenic |
| TTGTTGAATGCTAAGATGAG+AGG | 0.620285 | 1_3:+64671182 | None:intergenic |
| AACTACAGTGGGAAATGTGG+AGG | 0.621918 | 1_3:+64671298 | None:intergenic |
| ATGTTGCTCATAAAAGTGGT+AGG | 0.622477 | 1_3:+64671242 | None:intergenic |
| AGCTGTTGAAGCCAGTGCAG+AGG | 0.624332 | 1_3:-64670126 | Msa0133410:CDS |
| CGGGACATACACTGAAGATG+AGG | 0.626150 | 1_3:-64669764 | Msa0133410:CDS |
| CACCGGCTTCCATTTCCATG+GGG | 0.630823 | 1_3:+64672594 | None:intergenic |
| TATCTGCGTCCATGTTGCGG+AGG | 0.634849 | 1_3:+64672648 | None:intergenic |
| GGAAGACTACACTCATGCAT+AGG | 0.648368 | 1_3:-64672057 | Msa0133410:CDS |
| AGATGAGGATGCTATAGATG+AGG | 0.654047 | 1_3:-64669749 | Msa0133410:CDS |
| ACCGGCTTCCATTTCCATGG+GGG | 0.657686 | 1_3:+64672595 | None:intergenic |
| GTTTGCAACCAAGTTCGATG+AGG | 0.658878 | 1_3:-64671858 | Msa0133410:intron |
| ACTAGTAGGAGTAATTGCAA+AGG | 0.660440 | 1_3:-64669513 | Msa0133410:three_prime_UTR |
| GTTGGAAGAAAATCGCCGGA+AGG | 0.664727 | 1_3:-64669920 | Msa0133410:CDS |
| AAGTCAAAATTCCACCATTG+GGG | 0.670613 | 1_3:+64671891 | None:intergenic |
| GGTGTAGAAGAGAACGACGC+CGG | 0.671853 | 1_3:+64672721 | None:intergenic |
| CAGAGTCATTCGTACTACGA+AGG | 0.677196 | 1_3:+64669612 | None:intergenic |
| AACTACATAGGCAACTACAG+TGG | 0.686317 | 1_3:+64671286 | None:intergenic |
| GTAGTATCCTCTATAAGACA+AGG | 0.691493 | 1_3:-64671208 | Msa0133410:CDS |
| GGCGGCGCGAACAACTCCGG+TGG | 0.695334 | 1_3:+64672700 | None:intergenic |
| TCTCATCTTAGCATTCAACA+AGG | 0.708282 | 1_3:-64671180 | Msa0133410:CDS |
| ATAGAATGTATGAAATAACA+GGG | 0.711420 | 1_3:+64669578 | None:intergenic |
| ACTCATCTGTCAAACATCAG+GGG | 0.713135 | 1_3:-64672022 | Msa0133410:CDS |
| GTGTTGATTAGGGCTTACGG+TGG | 0.717038 | 1_3:+64672671 | None:intergenic |
| GTCAGATTGAGATATTCACA+TGG | 0.740453 | 1_3:-64671355 | Msa0133410:CDS |
| CTCTCTCGGAGACAACACGC+CGG | 0.774524 | 1_3:-64672740 | Msa0133410:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCAAACAAAATTTATTT+AGG | - | chr1_3:64669591-64669610 | Msa0133410:three_prime_UTR | 10.0% |
| !! | AATATATATATATATATTGC+TGG | - | chr1_3:64670316-64670335 | Msa0133410:intron | 10.0% |
| !!! | TGTTTAAGTTATTATTTTAT+AGG | - | chr1_3:64671579-64671598 | Msa0133410:intron | 10.0% |
| !!! | TACAAAAAAAAACGTTTTTA+GGG | + | chr1_3:64669684-64669703 | None:intergenic | 15.0% |
| !!! | ATACAAAAAAAAACGTTTTT+AGG | + | chr1_3:64669685-64669704 | None:intergenic | 15.0% |
| !! | ATAAATAAATCATGACATTT+GGG | - | chr1_3:64671219-64671238 | Msa0133410:CDS | 15.0% |
| !!! | ATTTTAACATTTCATTCAAT+TGG | - | chr1_3:64671453-64671472 | Msa0133410:intron | 15.0% |
| !! | ATAATAACTTAAACATGAAA+GGG | + | chr1_3:64671574-64671593 | None:intergenic | 15.0% |
| !! | AATAATAACTTAAACATGAA+AGG | + | chr1_3:64671575-64671594 | None:intergenic | 15.0% |
| !!! | TAATTTGAAATTGTGAATCA+TGG | - | chr1_3:64669724-64669743 | Msa0133410:CDS | 20.0% |
| !! | AATATAACTCATTTGTGTTA+AGG | - | chr1_3:64670027-64670046 | Msa0133410:intron | 20.0% |
| !! | ATATAACTCATTTGTGTTAA+GGG | - | chr1_3:64670028-64670047 | Msa0133410:intron | 20.0% |
| !!! | TATATATATATTGCTGGTTA+TGG | - | chr1_3:64670322-64670341 | Msa0133410:intron | 20.0% |
| !!! | GTTTTACTTATATATGCATT+CGG | - | chr1_3:64670366-64670385 | Msa0133410:intron | 20.0% |
| !! | GCATAAAAAAAAATTAAGCA+GGG | + | chr1_3:64670437-64670456 | None:intergenic | 20.0% |
| !!! | TGCTTAATTTTTTTTTATGC+CGG | - | chr1_3:64670437-64670456 | Msa0133410:intron | 20.0% |
| !! | CATGAAAACAAATAAATTGT+TGG | + | chr1_3:64670600-64670619 | None:intergenic | 20.0% |
| !!! | TATCATTTTTATAGCTTTCA+AGG | + | chr1_3:64671055-64671074 | None:intergenic | 20.0% |
| !!! | TCTAATTGATAGTTTTATCT+CGG | - | chr1_3:64671134-64671153 | Msa0133410:intron | 20.0% |
| !! | GTTCAAATTAAGTACTTAAA+AGG | + | chr1_3:64671188-64671207 | None:intergenic | 20.0% |
| !! | GATAAATAAATCATGACATT+TGG | - | chr1_3:64671218-64671237 | Msa0133410:CDS | 20.0% |
| !!! | AACTTTTAAGTTTAACAGAT+TGG | - | chr1_3:64671508-64671527 | Msa0133410:intron | 20.0% |
| !!! | ACTTTTAAGTTTAACAGATT+GGG | - | chr1_3:64671509-64671528 | Msa0133410:intron | 20.0% |
| !!! | AATTTGTTTTGTTTATCTAG+TGG | - | chr1_3:64671802-64671821 | Msa0133410:intron | 20.0% |
| !! | CAAAATCAAAAGTGAAATAA+TGG | + | chr1_3:64672071-64672090 | None:intergenic | 20.0% |
| !!! | TTTTGATTTTGCATTTAGTT+AGG | - | chr1_3:64672080-64672099 | Msa0133410:intron | 20.0% |
| !! | ATAGAATGTATGAAATAACA+GGG | + | chr1_3:64672537-64672556 | None:intergenic | 20.0% |
| !! | TACTAGTATAAAAAACATCT+AGG | + | chr1_3:64672586-64672605 | None:intergenic | 20.0% |
| !!! | TAGATGTTTTTTATACTAGT+AGG | - | chr1_3:64672585-64672604 | Msa0133410:intron | 20.0% |
| !! | AAAACAGATACTAGATATAT+GGG | + | chr1_3:64672683-64672702 | None:intergenic | 20.0% |
| ! | GGAAAAAAACAAACAAAAAG+AGG | - | chr1_3:64669765-64669784 | Msa0133410:CDS | 25.0% |
| !! | ATATCAATGTTAGAAGCATA+TGG | + | chr1_3:64670153-64670172 | None:intergenic | 25.0% |
| ! | ATTATACTGTACATGAGTTT+AGG | + | chr1_3:64670299-64670318 | None:intergenic | 25.0% |
| ! | GGCATAAAAAAAAATTAAGC+AGG | + | chr1_3:64670438-64670457 | None:intergenic | 25.0% |
| !!! | GCTTAATTTTTTTTTATGCC+GGG | - | chr1_3:64670438-64670457 | Msa0133410:intron | 25.0% |
| ! | TATACCAATAGCTTAATTAG+AGG | + | chr1_3:64670506-64670525 | None:intergenic | 25.0% |
| !!! | AAGGTGTTTGATTAATCTTT+TGG | + | chr1_3:64671274-64671293 | None:intergenic | 25.0% |
| ! | AAGTCTAACTCTTAATTCAT+AGG | + | chr1_3:64671331-64671350 | None:intergenic | 25.0% |
| !!! | CTTTTAAGTTTAACAGATTG+GGG | - | chr1_3:64671510-64671529 | Msa0133410:intron | 25.0% |
| ! | AACAAAACAAATTCGACAAA+AGG | + | chr1_3:64671795-64671814 | None:intergenic | 25.0% |
| ! | GATAGAATGTATGAAATAAC+AGG | + | chr1_3:64672538-64672557 | None:intergenic | 25.0% |
| ! | CAAAACAGATACTAGATATA+TGG | + | chr1_3:64672684-64672703 | None:intergenic | 25.0% |
| !!! | ATCTAGTATCTGTTTTGTTT+AGG | - | chr1_3:64672687-64672706 | Msa0133410:five_prime_UTR | 25.0% |
| !!! | TCTAGTATCTGTTTTGTTTA+GGG | - | chr1_3:64672688-64672707 | Msa0133410:five_prime_UTR | 25.0% |
| GTAAAGTGAAAGTGAATAAG+CGG | + | chr1_3:64669570-64669589 | None:intergenic | 30.0% | |
| TGAAATTGTGAATCATGGAA+TGG | - | chr1_3:64669729-64669748 | Msa0133410:CDS | 30.0% | |
| !!! | TGGAATGGTTTTTGTTTTCA+AGG | - | chr1_3:64669744-64669763 | Msa0133410:CDS | 30.0% |
| ATGAAGAAATTGGACATTGA+AGG | - | chr1_3:64669802-64669821 | Msa0133410:CDS | 30.0% | |
| !!! | ACAGGTTTTCTTTTGAAGTT+AGG | + | chr1_3:64669844-64669863 | None:intergenic | 30.0% |
| ! | TATCATCATTGTTGTTGGAA+TGG | - | chr1_3:64669864-64669883 | Msa0133410:CDS | 30.0% |
| CAATGAGTTACACAAAATCA+CGG | - | chr1_3:64669938-64669957 | Msa0133410:CDS | 30.0% | |
| GAAACTATATTGTGCATGTT+TGG | + | chr1_3:64669975-64669994 | None:intergenic | 30.0% | |
| TTACTTATATATGCATTCGG+TGG | - | chr1_3:64670369-64670388 | Msa0133410:intron | 30.0% | |
| CTAGTATCAATGATATCAAG+AGG | + | chr1_3:64670404-64670423 | None:intergenic | 30.0% | |
| CATAAGATCAAACAAACTCA+AGG | + | chr1_3:64670471-64670490 | None:intergenic | 30.0% | |
| TTGTCCTCTAATTAAGCTAT+TGG | - | chr1_3:64670499-64670518 | Msa0133410:intron | 30.0% | |
| GGAACAAAAGTAAAACACAT+CGG | + | chr1_3:64670623-64670642 | None:intergenic | 30.0% | |
| TGCATATAAGTTCTGTAGAT+GGG | + | chr1_3:64670644-64670663 | None:intergenic | 30.0% | |
| TTGCATATAAGTTCTGTAGA+TGG | + | chr1_3:64670645-64670664 | None:intergenic | 30.0% | |
| ACAGAAATTACCTGAAATTG+AGG | + | chr1_3:64670687-64670706 | None:intergenic | 30.0% | |
| AACTATCAATTAGATCTCAC+AGG | + | chr1_3:64671128-64671147 | None:intergenic | 30.0% | |
| !!! | TTGATTAATCTTTTGGTGTC+AGG | + | chr1_3:64671267-64671286 | None:intergenic | 30.0% |
| TTATATGTGCAATTAGAGAG+AGG | + | chr1_3:64671403-64671422 | None:intergenic | 30.0% | |
| TTAAAAGATCTTATGCTTCG+TGG | - | chr1_3:64671430-64671449 | Msa0133410:intron | 30.0% | |
| GATTCAGCTCAAATATACAA+AGG | + | chr1_3:64671648-64671667 | None:intergenic | 30.0% | |
| AAACAAATTCGACAAAAGGA+AGG | + | chr1_3:64671791-64671810 | None:intergenic | 30.0% | |
| ! | TACAGTAATTTAAGATCAGC+TGG | - | chr1_3:64671921-64671940 | Msa0133410:CDS | 30.0% |
| !! | GATGATGATGATGTTGATTT+CGG | - | chr1_3:64672328-64672347 | Msa0133410:CDS | 30.0% |
| !! | ATGATGATGATGTTGATTTC+GGG | - | chr1_3:64672329-64672348 | Msa0133410:CDS | 30.0% |
| GTTCATAAAATCACATCAGA+AGG | + | chr1_3:64672416-64672435 | None:intergenic | 30.0% | |
| ! | GATGTGATTTTATGAACGTT+TGG | - | chr1_3:64672419-64672438 | Msa0133410:intron | 30.0% |
| GAAATAACAGGGCAATAAAT+CGG | + | chr1_3:64672526-64672545 | None:intergenic | 30.0% | |
| ! | ATTGTGAGATTTTCAAACTG+CGG | + | chr1_3:64672764-64672783 | None:intergenic | 30.0% |
| ATTTCTTCATAGACTCACTC+AGG | + | chr1_3:64669792-64669811 | None:intergenic | 35.0% | |
| GAGTGAGTCTATGAAGAAAT+TGG | - | chr1_3:64669792-64669811 | Msa0133410:CDS | 35.0% | |
| CCAACAACAATGATGATAAC+AGG | + | chr1_3:64669862-64669881 | None:intergenic | 35.0% | |
| CCTGTTATCATCATTGTTGT+TGG | - | chr1_3:64669859-64669878 | Msa0133410:CDS | 35.0% | |
| !! | ACGTAGTAGTTTTGCTGATT+TGG | - | chr1_3:64670004-64670023 | Msa0133410:intron | 35.0% |
| ATACTCATCTGTCAAACATC+AGG | - | chr1_3:64670088-64670107 | Msa0133410:intron | 35.0% | |
| TACTCATCTGTCAAACATCA+GGG | - | chr1_3:64670089-64670108 | Msa0133410:intron | 35.0% | |
| AAGTCAAAATTCCACCATTG+GGG | + | chr1_3:64670224-64670243 | None:intergenic | 35.0% | |
| GAAGTCAAAATTCCACCATT+GGG | + | chr1_3:64670225-64670244 | None:intergenic | 35.0% | |
| AGAAGTCAAAATTCCACCAT+TGG | + | chr1_3:64670226-64670245 | None:intergenic | 35.0% | |
| AAACTTAACCTCATCGAACT+TGG | + | chr1_3:64670265-64670284 | None:intergenic | 35.0% | |
| GTTTACATTGTCATTGTCAG+TGG | - | chr1_3:64670543-64670562 | Msa0133410:intron | 35.0% | |
| TGTTTATGCTCCTCAATTTC+AGG | - | chr1_3:64670674-64670693 | Msa0133410:intron | 35.0% | |
| TCAACTTGACTATGTTCTTG+TGG | - | chr1_3:64670725-64670744 | Msa0133410:intron | 35.0% | |
| GTCAGATTGAGATATTCACA+TGG | - | chr1_3:64670757-64670776 | Msa0133410:intron | 35.0% | |
| ATGTTGCTCATAAAAGTGGT+AGG | + | chr1_3:64670873-64670892 | None:intergenic | 35.0% | |
| AAGCATGTTGCTCATAAAAG+TGG | + | chr1_3:64670877-64670896 | None:intergenic | 35.0% | |
| GTAGTATCCTCTATAAGACA+AGG | - | chr1_3:64670904-64670923 | Msa0133410:intron | 35.0% | |
| TTGTTGAATGCTAAGATGAG+AGG | + | chr1_3:64670933-64670952 | None:intergenic | 35.0% | |
| TCTCATCTTAGCATTCAACA+AGG | - | chr1_3:64670932-64670951 | Msa0133410:intron | 35.0% | |
| CAAAATCAACAATACCTCCA+AGG | + | chr1_3:64670982-64671001 | None:intergenic | 35.0% | |
| !! | GTCTTTTAACTCACTACAAC+AGG | - | chr1_3:64671093-64671112 | Msa0133410:intron | 35.0% |
| !! | GAACTTGATAGCTGTTTTCA+AGG | + | chr1_3:64671293-64671312 | None:intergenic | 35.0% |
| GAAAACAGCTATCAAGTTCA+TGG | - | chr1_3:64671294-64671313 | Msa0133410:CDS | 35.0% | |
| TTTAACAGATTGGGGTGAAA+TGG | - | chr1_3:64671518-64671537 | Msa0133410:intron | 35.0% | |
| TTAACAGATTGGGGTGAAAT+GGG | - | chr1_3:64671519-64671538 | Msa0133410:intron | 35.0% | |
| ! | AACCATTTTCCTGTAGTTTC+AGG | - | chr1_3:64671607-64671626 | Msa0133410:intron | 35.0% |
| ! | ACCATTTTCCTGTAGTTTCA+GGG | - | chr1_3:64671608-64671627 | Msa0133410:intron | 35.0% |
| GCTCAAATATACAAAGGAAG+AGG | + | chr1_3:64671642-64671661 | None:intergenic | 35.0% | |
| TCTGTTCAACAGAATTGACT+GGG | + | chr1_3:64671723-64671742 | None:intergenic | 35.0% | |
| TTCTGTTCAACAGAATTGAC+TGG | + | chr1_3:64671724-64671743 | None:intergenic | 35.0% | |
| !! | CTAGTGGATGAAAGATTTTG+AGG | - | chr1_3:64671818-64671837 | Msa0133410:intron | 35.0% |
| CAAGAGCAGTTAATACTTGT+AGG | + | chr1_3:64672024-64672043 | None:intergenic | 35.0% | |
| ! | GTTAGGTTGTATGTCTTTGA+TGG | - | chr1_3:64672097-64672116 | Msa0133410:intron | 35.0% |
| AGGAGAACATGGATAAACTT+AGG | - | chr1_3:64672212-64672231 | Msa0133410:intron | 35.0% | |
| AGAACATGGATAAACTTAGG+AGG | - | chr1_3:64672215-64672234 | Msa0133410:intron | 35.0% | |
| GAACATGGATAAACTTAGGA+GGG | - | chr1_3:64672216-64672235 | Msa0133410:intron | 35.0% | |
| !! | CACTGGTTTGAAAAACAAAG+AGG | - | chr1_3:64672276-64672295 | Msa0133410:CDS | 35.0% |
| TGGTTTGAAAAACAAAGAGG+AGG | - | chr1_3:64672279-64672298 | Msa0133410:CDS | 35.0% | |
| TATGAACGTTTGGATTGCAT+CGG | - | chr1_3:64672429-64672448 | Msa0133410:intron | 35.0% | |
| TATAGGACCTTGACTTCATT+TGG | - | chr1_3:64672464-64672483 | Msa0133410:intron | 35.0% | |
| CTATCAGCATTATTCTCTCT+AGG | - | chr1_3:64672553-64672572 | Msa0133410:intron | 35.0% | |
| ACTAGTAGGAGTAATTGCAA+AGG | - | chr1_3:64672599-64672618 | Msa0133410:CDS | 35.0% | |
| ATTTGCACAAAAATCGAGCA+TGG | + | chr1_3:64672628-64672647 | None:intergenic | 35.0% | |
| ! | CTCGATTTTTGTGCAAATTG+AGG | - | chr1_3:64672630-64672649 | Msa0133410:CDS | 35.0% |
| !! | AGAAAGTACTTGAGAGTCAC+CGG | + | chr1_3:64669538-64669557 | None:intergenic | 40.0% |
| ! | ATCATTGTTGTTGGAATGGC+AGG | - | chr1_3:64669868-64669887 | Msa0133410:CDS | 40.0% |
| ACTCATTTGTGTTAAGGGAG+TGG | - | chr1_3:64670033-64670052 | Msa0133410:intron | 40.0% | |
| CTCATTTGTGTTAAGGGAGT+GGG | - | chr1_3:64670034-64670053 | Msa0133410:intron | 40.0% | |
| ACTCATCTGTCAAACATCAG+GGG | - | chr1_3:64670090-64670109 | Msa0133410:intron | 40.0% | |
| TTATGTGATGAATCTCGACC+CGG | - | chr1_3:64670113-64670132 | Msa0133410:CDS | 40.0% | |
| GTCATGAAGCAATTCAACCT+TGG | - | chr1_3:64670198-64670217 | Msa0133410:CDS | 40.0% | |
| TATGTTCTTGTGGATACTCC+TGG | - | chr1_3:64670735-64670754 | Msa0133410:intron | 40.0% | |
| GTGAATATCTCAATCTGACC+AGG | + | chr1_3:64670756-64670775 | None:intergenic | 40.0% | |
| ATATTCACATGGTCTGCTTC+TGG | - | chr1_3:64670768-64670787 | Msa0133410:intron | 40.0% | |
| ACTACATAGGCAACTACAGT+GGG | + | chr1_3:64670828-64670847 | None:intergenic | 40.0% | |
| AACTACATAGGCAACTACAG+TGG | + | chr1_3:64670829-64670848 | None:intergenic | 40.0% | |
| ACGAGGTGTATCAACTACAT+AGG | + | chr1_3:64670841-64670860 | None:intergenic | 40.0% | |
| GAGGTAACCTTGTCTTATAG+AGG | + | chr1_3:64670914-64670933 | None:intergenic | 40.0% | |
| GGTGAAATGGGAAGCAATAT+TGG | - | chr1_3:64671531-64671550 | Msa0133410:intron | 40.0% | |
| ACCCTGAAACTACAGGAAAA+TGG | + | chr1_3:64671612-64671631 | None:intergenic | 40.0% | |
| TCCTGTAGTTTCAGGGTTTA+TGG | - | chr1_3:64671615-64671634 | Msa0133410:intron | 40.0% | |
| CCTGTAGTTTCAGGGTTTAT+GGG | - | chr1_3:64671616-64671635 | Msa0133410:intron | 40.0% | |
| CAACAGAATTGACTGGGTAT+TGG | + | chr1_3:64671717-64671736 | None:intergenic | 40.0% | |
| TTTAACTCAGAGCCTTTCTC+TGG | - | chr1_3:64671884-64671903 | Msa0133410:CDS | 40.0% | |
| GTTTATCCATGTTCTCCTTC+CGG | + | chr1_3:64672210-64672229 | None:intergenic | 40.0% | |
| AGATGAGGATGCTATAGATG+AGG | - | chr1_3:64672363-64672382 | Msa0133410:intron | 40.0% | |
| GCATGTACCAAATGAAGTCA+AGG | + | chr1_3:64672474-64672493 | None:intergenic | 40.0% | |
| ! | AGATTTTCAAACTGCGGATG+TGG | + | chr1_3:64672758-64672777 | None:intergenic | 40.0% |
| !! | AGGGTGTTGATTAGGGCTTA+CGG | + | chr1_3:64669447-64669466 | None:intergenic | 45.0% |
| AAGTGAATAAGCGGCGAGTT+TGG | + | chr1_3:64669561-64669580 | None:intergenic | 45.0% | |
| GACATTGAAGGTTCCTCTTC+TGG | - | chr1_3:64669814-64669833 | Msa0133410:CDS | 45.0% | |
| GAAGTTAGGTGAACCAGAAG+AGG | + | chr1_3:64669830-64669849 | None:intergenic | 45.0% | |
| GGAAGACTACACTCATGCAT+AGG | - | chr1_3:64670055-64670074 | Msa0133410:intron | 45.0% | |
| GACTACACTCATGCATAGGT+TGG | - | chr1_3:64670059-64670078 | Msa0133410:intron | 45.0% | |
| !! | TATGGAAGTGTCATGACAGC+CGG | + | chr1_3:64670135-64670154 | None:intergenic | 45.0% |
| GTTTGCAACCAAGTTCGATG+AGG | - | chr1_3:64670254-64670273 | Msa0133410:CDS | 45.0% | |
| CAAACTCAAGGAAAGCTACC+CGG | + | chr1_3:64670459-64670478 | None:intergenic | 45.0% | |
| ! | CATTGTCAGTGGCTCGTTTT+AGG | - | chr1_3:64670554-64670573 | Msa0133410:intron | 45.0% |
| AACTACAGTGGGAAATGTGG+AGG | + | chr1_3:64670817-64670836 | None:intergenic | 45.0% | |
| AGCACAACATGAGTTTGCCT+TGG | - | chr1_3:64670962-64670981 | Msa0133410:intron | 45.0% | |
| ACAACATGAGTTTGCCTTGG+AGG | - | chr1_3:64670965-64670984 | Msa0133410:intron | 45.0% | |
| CCCATAAACCCTGAAACTAC+AGG | + | chr1_3:64671619-64671638 | None:intergenic | 45.0% | |
| ATTCATCCAGTGCCAGAGAA+AGG | + | chr1_3:64671899-64671918 | None:intergenic | 45.0% | |
| TTCCATGTATTCCTCTGCAC+TGG | + | chr1_3:64672000-64672019 | None:intergenic | 45.0% | |
| ACGTGAAGAGAAACAGCTGT+TGG | - | chr1_3:64672174-64672193 | Msa0133410:intron | 45.0% | |
| AGCTGTTGGAAGAAAATCGC+CGG | - | chr1_3:64672188-64672207 | Msa0133410:intron | 45.0% | |
| GGATAAACTTAGGAGGGAGA+TGG | - | chr1_3:64672222-64672241 | Msa0133410:intron | 45.0% | |
| ! | GAAACTGTAGTGTTGAGCAC+TGG | - | chr1_3:64672259-64672278 | Msa0133410:CDS | 45.0% |
| GAAAAACAAAGAGGAGGACG+AGG | - | chr1_3:64672285-64672304 | Msa0133410:CDS | 45.0% | |
| GGATGAAGAGGATGAGGAAA+TGG | - | chr1_3:64672306-64672325 | Msa0133410:CDS | 45.0% | |
| AGATGAGGACGAAGATGAAG+AGG | - | chr1_3:64672378-64672397 | Msa0133410:intron | 45.0% | |
| ATCGGAACTAGCGCTTGTAT+AGG | - | chr1_3:64672447-64672466 | Msa0133410:intron | 45.0% | |
| CAGAGTCATTCGTACTACGA+AGG | + | chr1_3:64672503-64672522 | None:intergenic | 45.0% | |
| GTCGTTCTCTTCTACACCAC+CGG | - | chr1_3:64669396-64669415 | Msa0133410:three_prime_UTR | 50.0% | |
| TAGGGCTTACGGTGGTGATA+AGG | + | chr1_3:64669436-64669455 | None:intergenic | 50.0% | |
| !! | GTGTTGATTAGGGCTTACGG+TGG | + | chr1_3:64669444-64669463 | None:intergenic | 50.0% |
| !! | GTTGCGGAGGGTGTTGATTA+GGG | + | chr1_3:64669454-64669473 | None:intergenic | 50.0% |
| !! | TGTTGCGGAGGGTGTTGATT+AGG | + | chr1_3:64669455-64669474 | None:intergenic | 50.0% |
| AATCAACACCCTCCGCAACA+TGG | - | chr1_3:64669455-64669474 | Msa0133410:three_prime_UTR | 50.0% | |
| CGTTATCTGCGTCCATGTTG+CGG | + | chr1_3:64669470-64669489 | None:intergenic | 50.0% | |
| !! | ATTTCCATGGGGGTGTCTTC+GGG | + | chr1_3:64669510-64669529 | None:intergenic | 50.0% |
| !! | CATTTCCATGGGGGTGTCTT+CGG | + | chr1_3:64669511-64669530 | None:intergenic | 50.0% |
| !! | TCACCGGCTTCCATTTCCAT+GGG | + | chr1_3:64669522-64669541 | None:intergenic | 50.0% |
| GAGTAACGCTGTGTCTATCG+TGG | + | chr1_3:64669648-64669667 | None:intergenic | 50.0% | |
| !! | ATGGAAGTGTCATGACAGCC+GGG | + | chr1_3:64670134-64670153 | None:intergenic | 50.0% |
| CAATTCAACCTTGGCCCCAA+TGG | - | chr1_3:64670207-64670226 | Msa0133410:CDS | 50.0% | |
| AAATTCCACCATTGGGGCCA+AGG | + | chr1_3:64670218-64670237 | None:intergenic | 50.0% | |
| GGCAACTACAGTGGGAAATG+TGG | + | chr1_3:64670820-64670839 | None:intergenic | 50.0% | |
| ! | GTGGTAGGATTTTCTGCACG+AGG | + | chr1_3:64670858-64670877 | None:intergenic | 50.0% |
| TTTGGGCTGTGTCTGTGATG+AGG | - | chr1_3:64671236-64671255 | Msa0133410:CDS | 50.0% | |
| GCTGTGTCTGTGATGAGGTT+TGG | - | chr1_3:64671241-64671260 | Msa0133410:CDS | 50.0% | |
| GATCTGAACTTGCAGCTGCT+TGG | + | chr1_3:64671848-64671867 | None:intergenic | 50.0% | |
| GCTGGAGTTTCTGCAGTTAC+TGG | - | chr1_3:64671939-64671958 | Msa0133410:CDS | 50.0% | |
| GTTTCTGCAGTTACTGGTGC+TGG | - | chr1_3:64671945-64671964 | Msa0133410:CDS | 50.0% | |
| ! | GTTACTGGTGCTGGAATCGA+AGG | - | chr1_3:64671954-64671973 | Msa0133410:CDS | 50.0% |
| AGCCAGTGCAGAGGAATACA+TGG | - | chr1_3:64671995-64672014 | Msa0133410:CDS | 50.0% | |
| GTTGGAAGAAAATCGCCGGA+AGG | - | chr1_3:64672192-64672211 | Msa0133410:intron | 50.0% | |
| AAATCGCCGGAAGGAGAACA+TGG | - | chr1_3:64672201-64672220 | Msa0133410:intron | 50.0% | |
| AGGAGGGAGATGGAGAAATC+TGG | - | chr1_3:64672232-64672251 | Msa0133410:intron | 50.0% | |
| AGGGAGATGGAGAAATCTGG+AGG | - | chr1_3:64672235-64672254 | Msa0133410:intron | 50.0% | |
| CGGGACATACACTGAAGATG+AGG | - | chr1_3:64672348-64672367 | Msa0133410:CDS | 50.0% | |
| GGTGTAGAAGAGAACGACGC+CGG | + | chr1_3:64669394-64669413 | None:intergenic | 55.0% | |
| GGCTTACGGTGGTGATAAGG+CGG | + | chr1_3:64669433-64669452 | None:intergenic | 55.0% | |
| ATCTGCGTCCATGTTGCGGA+GGG | + | chr1_3:64669466-64669485 | None:intergenic | 55.0% | |
| TATCTGCGTCCATGTTGCGG+AGG | + | chr1_3:64669467-64669486 | None:intergenic | 55.0% | |
| !! | TTTCCATGGGGGTGTCTTCG+GGG | + | chr1_3:64669509-64669528 | None:intergenic | 55.0% |
| CGAAGACACCCCCATGGAAA+TGG | - | chr1_3:64669509-64669528 | Msa0133410:three_prime_UTR | 55.0% | |
| ACCCCCATGGAAATGGAAGC+CGG | - | chr1_3:64669516-64669535 | Msa0133410:three_prime_UTR | 55.0% | |
| ! | ACCGGCTTCCATTTCCATGG+GGG | + | chr1_3:64669520-64669539 | None:intergenic | 55.0% |
| !! | CACCGGCTTCCATTTCCATG+GGG | + | chr1_3:64669521-64669540 | None:intergenic | 55.0% |
| !! | GTCACCGGCTTCCATTTCCA+TGG | + | chr1_3:64669523-64669542 | None:intergenic | 55.0% |
| GTTGGAATGGCAGGTCAGTC+AGG | - | chr1_3:64669877-64669896 | Msa0133410:CDS | 55.0% | |
| TTCAACCTTGGCCCCAATGG+TGG | - | chr1_3:64670210-64670229 | Msa0133410:CDS | 55.0% | |
| TCAGAGCCTTTCTCTGGCAC+TGG | - | chr1_3:64671890-64671909 | Msa0133410:CDS | 55.0% | |
| AGCTGTTGAAGCCAGTGCAG+AGG | - | chr1_3:64671986-64672005 | Msa0133410:CDS | 55.0% | |
| AGAGGAGGACGAGGATGAAG+AGG | - | chr1_3:64672294-64672313 | Msa0133410:CDS | 55.0% | |
| GGACGAGGATGAAGAGGATG+AGG | - | chr1_3:64672300-64672319 | Msa0133410:CDS | 55.0% | |
| CACACACACGCGAGCTCTCT+CGG | - | chr1_3:64669358-64669377 | Msa0133410:three_prime_UTR | 60.0% | |
| CTCTCTCGGAGACAACACGC+CGG | - | chr1_3:64669372-64669391 | Msa0133410:three_prime_UTR | 60.0% | |
| TAAGGCGGCGCGAACAACTC+CGG | + | chr1_3:64669418-64669437 | None:intergenic | 60.0% | |
| TAACCCCGAAGACACCCCCA+TGG | - | chr1_3:64669503-64669522 | Msa0133410:three_prime_UTR | 60.0% | |
| GGCGGCGCGAACAACTCCGG+TGG | + | chr1_3:64669415-64669434 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 64669332 | 64672802 | 64669332 | ID=Msa0133410;Name=Msa0133410 |
| chr1_3 | mRNA | 64669332 | 64672802 | 64669332 | ID=Msa0133410-mRNA-1;Parent=Msa0133410;Name=Msa0133410-mRNA-1;_AED=0.08;_eAED=0.08;_QI=142|1|1|1|1|1|6|382|395 |
| chr1_3 | exon | 64669332 | 64669978 | 64669332 | ID=Msa0133410-mRNA-1:exon:21797;Parent=Msa0133410-mRNA-1 |
| chr1_3 | exon | 64670107 | 64670312 | 64670107 | ID=Msa0133410-mRNA-1:exon:21796;Parent=Msa0133410-mRNA-1 |
| chr1_3 | exon | 64671148 | 64671438 | 64671148 | ID=Msa0133410-mRNA-1:exon:21795;Parent=Msa0133410-mRNA-1 |
| chr1_3 | exon | 64671859 | 64672085 | 64671859 | ID=Msa0133410-mRNA-1:exon:21794;Parent=Msa0133410-mRNA-1 |
| chr1_3 | exon | 64672245 | 64672368 | 64672245 | ID=Msa0133410-mRNA-1:exon:21793;Parent=Msa0133410-mRNA-1 |
| chr1_3 | exon | 64672586 | 64672802 | 64672586 | ID=Msa0133410-mRNA-1:exon:21792;Parent=Msa0133410-mRNA-1 |
| chr1_3 | five_prime_UTR | 64672661 | 64672802 | 64672661 | ID=Msa0133410-mRNA-1:five_prime_utr;Parent=Msa0133410-mRNA-1 |
| chr1_3 | CDS | 64672586 | 64672660 | 64672586 | ID=Msa0133410-mRNA-1:cds;Parent=Msa0133410-mRNA-1 |
| chr1_3 | CDS | 64672245 | 64672368 | 64672245 | ID=Msa0133410-mRNA-1:cds;Parent=Msa0133410-mRNA-1 |
| chr1_3 | CDS | 64671859 | 64672085 | 64671859 | ID=Msa0133410-mRNA-1:cds;Parent=Msa0133410-mRNA-1 |
| chr1_3 | CDS | 64671148 | 64671438 | 64671148 | ID=Msa0133410-mRNA-1:cds;Parent=Msa0133410-mRNA-1 |
| chr1_3 | CDS | 64670107 | 64670312 | 64670107 | ID=Msa0133410-mRNA-1:cds;Parent=Msa0133410-mRNA-1 |
| chr1_3 | CDS | 64669714 | 64669978 | 64669714 | ID=Msa0133410-mRNA-1:cds;Parent=Msa0133410-mRNA-1 |
| chr1_3 | three_prime_UTR | 64669332 | 64669713 | 64669332 | ID=Msa0133410-mRNA-1:three_prime_utr;Parent=Msa0133410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
