Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184880 | XP_003592221.1 | 99.242 | 396 | 2 | 1 | 1 | 395 | 1 | 396 | 0.0 | 803 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184880 | sp|Q8W586|QQT2_ARATH | 72.571 | 350 | 95 | 1 | 19 | 368 | 4 | 352 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184880 | G7IEN9 | 99.242 | 396 | 2 | 1 | 1 | 395 | 1 | 396 | 0.0 | 803 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa0184880 | 0.803578 | 3.261218e-49 | -8.615850e-47 |
| Msa0049750 | Msa0184880 | 0.805410 | 1.352963e-49 | -8.615850e-47 |
| Msa0076120 | Msa0184880 | 0.979165 | 2.257994e-147 | -8.615850e-47 |
| Msa0133410 | Msa0184880 | 0.979254 | 1.444144e-147 | -8.615850e-47 |
| Msa0181540 | Msa0184880 | 0.983271 | 2.741735e-157 | -8.615850e-47 |
| Msa0184820 | Msa0184880 | 0.979837 | 7.458714e-149 | -8.615850e-47 |
| Msa0184880 | Msa0502090 | 0.808952 | 2.405347e-50 | -8.615850e-47 |
| Msa0184880 | Msa0791150 | 0.987198 | 2.121737e-169 | -8.615850e-47 |
| Msa0184880 | Msa1208380 | 0.816492 | 5.377936e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184880 | MtrunA17_Chr1g0202821 | 99.242 | 396 | 2 | 1 | 1 | 395 | 1 | 396 | 0.0 | 803 |
| Msa0184880 | MtrunA17_Chr3g0119231 | 29.255 | 188 | 128 | 3 | 61 | 245 | 6 | 191 | 4.38e-19 | 86.3 |
| Msa0184880 | MtrunA17_Chr8g0364001 | 30.688 | 189 | 122 | 3 | 61 | 244 | 6 | 190 | 9.52e-19 | 85.9 |
| Msa0184880 | MtrunA17_Chr5g0442031 | 39.506 | 81 | 49 | 0 | 61 | 141 | 6 | 86 | 1.44e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184880 | AT4G21800.2 | 72.571 | 350 | 95 | 1 | 19 | 368 | 4 | 352 | 0.0 | 531 |
| Msa0184880 | AT4G21800.1 | 72.571 | 350 | 95 | 1 | 19 | 368 | 4 | 352 | 0.0 | 531 |
| Msa0184880 | AT4G12790.4 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0184880 | AT4G12790.2 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0184880 | AT4G12790.6 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0184880 | AT4G12790.5 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0184880 | AT4G12790.1 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0184880 | AT4G12790.3 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 5.86e-19 | 86.7 |
| Msa0184880 | AT5G22370.2 | 27.957 | 186 | 131 | 3 | 61 | 244 | 6 | 190 | 1.60e-15 | 77.0 |
| Msa0184880 | AT5G22370.3 | 27.957 | 186 | 131 | 3 | 61 | 244 | 6 | 190 | 1.60e-15 | 77.0 |
| Msa0184880 | AT5G22370.1 | 27.957 | 186 | 131 | 3 | 61 | 244 | 6 | 190 | 1.60e-15 | 77.0 |
Find 112 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATTGAAGGTTCCTCTTC+TGG | 0.208586 | 1_4:+74510245 | Msa0184880:CDS |
| CAAAACAGATACTAGATATA+TGG | 0.237911 | 1_4:-74513110 | None:intergenic |
| TGTTGCGGAGGGTGTTGATT+AGG | 0.252127 | 1_4:-74509883 | None:intergenic |
| GCTGGAGTTTCTGCAGTTAC+TGG | 0.283127 | 1_4:+74512368 | Msa0184880:CDS |
| GATGATGATGATGTTGATTT+CGG | 0.300467 | 1_4:+74512757 | Msa0184880:CDS |
| GTTGCGGAGGGTGTTGATTA+GGG | 0.319457 | 1_4:-74509882 | None:intergenic |
| CCTGTTATCATCATTGTTGT+TGG | 0.328714 | 1_4:+74510290 | Msa0184880:CDS |
| GATAGAATGTATGAAATAAC+AGG | 0.330341 | 1_4:-74512964 | None:intergenic |
| ATGATGATGATGTTGATTTC+GGG | 0.336647 | 1_4:+74512758 | Msa0184880:CDS |
| CCAACAACAATGATGATAAC+AGG | 0.357092 | 1_4:-74510290 | None:intergenic |
| GTTTATCCATGTTCTCCTTC+CGG | 0.357858 | 1_4:-74512636 | None:intergenic |
| TATAGGACCTTGACTTCATT+TGG | 0.361838 | 1_4:+74512893 | Msa0184880:three_prime_UTR |
| ATATTCACATGGTCTGCTTC+TGG | 0.363085 | 1_4:+74511197 | Msa0184880:CDS |
| GAGTGAGTCTATGAAGAAAT+TGG | 0.370198 | 1_4:+74510223 | Msa0184880:CDS |
| GAAGTCAAAATTCCACCATT+GGG | 0.397466 | 1_4:-74510652 | None:intergenic |
| TACAGTAATTTAAGATCAGC+TGG | 0.416370 | 1_4:+74512350 | Msa0184880:CDS |
| ATCATTGTTGTTGGAATGGC+AGG | 0.426570 | 1_4:+74510299 | Msa0184880:CDS |
| GTTTCTGCAGTTACTGGTGC+TGG | 0.428710 | 1_4:+74512374 | Msa0184880:CDS |
| TTCCATGTATTCCTCTGCAC+TGG | 0.431616 | 1_4:-74512426 | None:intergenic |
| GAAATAACAGGGCAATAAAT+CGG | 0.435791 | 1_4:-74512952 | None:intergenic |
| GGATGAAGAGGATGAGGAAA+TGG | 0.438782 | 1_4:+74512735 | Msa0184880:CDS |
| ATACTCATCTGTCAAACATC+AGG | 0.441997 | 1_4:+74510518 | Msa0184880:CDS |
| TTTAACTCAGAGCCTTTCTC+TGG | 0.457020 | 1_4:+74512313 | Msa0184880:CDS |
| AAACTTAACCTCATCGAACT+TGG | 0.460043 | 1_4:-74510692 | None:intergenic |
| CTCATTTGTGTTAAGGGAGT+GGG | 0.461516 | 1_4:+74510464 | Msa0184880:intron |
| ATGAAGAAATTGGACATTGA+AGG | 0.465533 | 1_4:+74510233 | Msa0184880:CDS |
| CTCACACACGCGAGCTCTCT+CGG | 0.466385 | 1_4:+74509789 | Msa0184880:five_prime_UTR |
| AAAACAGATACTAGATATAT+GGG | 0.466514 | 1_4:-74513109 | None:intergenic |
| GGACGAGGATGAAGAGGATG+AGG | 0.467374 | 1_4:+74512729 | Msa0184880:CDS |
| ACAACATGAGTTTGCCTTGG+AGG | 0.468476 | 1_4:+74511394 | Msa0184880:CDS |
| AAATTCCACCATTGGGGCCA+AGG | 0.471975 | 1_4:-74510645 | None:intergenic |
| TAGGGCTTACGGTGGTGATA+AGG | 0.472410 | 1_4:-74509864 | None:intergenic |
| AGGAGGGAGATGGAGAAATC+TGG | 0.473893 | 1_4:+74512661 | Msa0184880:CDS |
| GATCTGAACTTGCAGCTGCT+TGG | 0.481512 | 1_4:-74512274 | None:intergenic |
| GTCACCGGCTTCCATTTCCA+TGG | 0.485145 | 1_4:-74509951 | None:intergenic |
| TCACCGGCTTCCATTTCCAT+GGG | 0.489818 | 1_4:-74509950 | None:intergenic |
| ATATCAATGTTAGAAGCATA+TGG | 0.489870 | 1_4:-74510580 | None:intergenic |
| CAATTCAACCTTGGCCCCAA+TGG | 0.493147 | 1_4:+74510637 | Msa0184880:CDS |
| AGAAGTCAAAATTCCACCAT+TGG | 0.493187 | 1_4:-74510653 | None:intergenic |
| TCAGAGCCTTTCTCTGGCAC+TGG | 0.495072 | 1_4:+74512319 | Msa0184880:CDS |
| CTATCAGCATTATTCTCTCT+AGG | 0.500275 | 1_4:+74512982 | Msa0184880:three_prime_UTR |
| AGCACAACATGAGTTTGCCT+TGG | 0.507905 | 1_4:+74511391 | Msa0184880:CDS |
| AAGCATGTTGCTCATAAAAG+TGG | 0.519169 | 1_4:-74511303 | None:intergenic |
| AGGAGAACATGGATAAACTT+AGG | 0.522057 | 1_4:+74512641 | Msa0184880:CDS |
| TATGGAAGTGTCATGACAGC+CGG | 0.522098 | 1_4:-74510562 | None:intergenic |
| TCAACTTGACTATGTTCTTG+TGG | 0.522799 | 1_4:+74511154 | Msa0184880:CDS |
| ATTCATCCAGTGCCAGAGAA+AGG | 0.526358 | 1_4:-74512325 | None:intergenic |
| CGTTATCTGCGTCCATGTTG+CGG | 0.534923 | 1_4:-74509898 | None:intergenic |
| TTCAACCTTGGCCCCAATGG+TGG | 0.539374 | 1_4:+74510640 | Msa0184880:CDS |
| AGCCAGTGCAGAGGAATACA+TGG | 0.540021 | 1_4:+74512424 | Msa0184880:CDS |
| TATGTTCTTGTGGATACTCC+TGG | 0.544128 | 1_4:+74511164 | Msa0184880:CDS |
| GAAGTTAGGTGAACCAGAAG+AGG | 0.546699 | 1_4:-74510258 | None:intergenic |
| ATCGGAACTAGCGCTTGTAT+AGG | 0.552743 | 1_4:+74512876 | Msa0184880:three_prime_UTR |
| TATCATCATTGTTGTTGGAA+TGG | 0.555919 | 1_4:+74510295 | Msa0184880:CDS |
| AGAGGAGGACGAGGATGAAG+AGG | 0.556313 | 1_4:+74512723 | Msa0184880:CDS |
| TATGAACGTTTGGATTGCAT+CGG | 0.557691 | 1_4:+74512858 | Msa0184880:three_prime_UTR |
| GGATAAACTTAGGAGGGAGA+TGG | 0.557760 | 1_4:+74512651 | Msa0184880:CDS |
| GTCGTTCTCTTCTACACCAC+CGG | 0.560461 | 1_4:+74509827 | Msa0184880:five_prime_UTR |
| AGAAAGTACTTGAGAGTCAC+CGG | 0.565078 | 1_4:-74509966 | None:intergenic |
| ATCTGCGTCCATGTTGCGGA+GGG | 0.565997 | 1_4:-74509894 | None:intergenic |
| GACTACACTCATGCATAGGT+TGG | 0.567808 | 1_4:+74510489 | Msa0184880:CDS |
| GTTACTGGTGCTGGAATCGA+AGG | 0.568425 | 1_4:+74512383 | Msa0184880:CDS |
| GAAACTGTAGTGTTGAGCAC+TGG | 0.570041 | 1_4:+74512688 | Msa0184880:CDS |
| AGCTGTTGGAAGAAAATCGC+CGG | 0.572545 | 1_4:+74512617 | Msa0184880:CDS |
| AAATCGCCGGAAGGAGAACA+TGG | 0.572726 | 1_4:+74512630 | Msa0184880:CDS |
| TACTCATCTGTCAAACATCA+GGG | 0.573701 | 1_4:+74510519 | Msa0184880:CDS |
| ATGGAAGTGTCATGACAGCC+GGG | 0.578869 | 1_4:-74510561 | None:intergenic |
| GGCAACTACAGTGGGAAATG+TGG | 0.579709 | 1_4:-74511246 | None:intergenic |
| ATTTCTTCATAGACTCACTC+AGG | 0.587164 | 1_4:-74510220 | None:intergenic |
| GTGAATATCTCAATCTGACC+AGG | 0.587935 | 1_4:-74511182 | None:intergenic |
| AGAACATGGATAAACTTAGG+AGG | 0.588077 | 1_4:+74512644 | Msa0184880:CDS |
| GTTCATAAAATCACATCAGA+AGG | 0.589818 | 1_4:-74512842 | None:intergenic |
| TAAGGCGGCGCGAACAACTC+CGG | 0.589916 | 1_4:-74509846 | None:intergenic |
| GCATGTACCAAATGAAGTCA+AGG | 0.590004 | 1_4:-74512900 | None:intergenic |
| AATCAACACCCTCCGCAACA+TGG | 0.591565 | 1_4:+74509886 | Msa0184880:exon |
| AGATGAGGACGAAGATGAAG+AGG | 0.599265 | 1_4:+74512807 | Msa0184880:CDS |
| GTCATGAAGCAATTCAACCT+TGG | 0.600059 | 1_4:+74510628 | Msa0184880:CDS |
| AGGGAGATGGAGAAATCTGG+AGG | 0.604309 | 1_4:+74512664 | Msa0184880:CDS |
| AGGGTGTTGATTAGGGCTTA+CGG | 0.604717 | 1_4:-74509875 | None:intergenic |
| ACTACATAGGCAACTACAGT+GGG | 0.605400 | 1_4:-74511254 | None:intergenic |
| ACGAGGTGTATCAACTACAT+AGG | 0.606135 | 1_4:-74511267 | None:intergenic |
| ACGTGAAGAGAAACAGCTGT+TGG | 0.606507 | 1_4:+74512603 | Msa0184880:CDS |
| GAACATGGATAAACTTAGGA+GGG | 0.606999 | 1_4:+74512645 | Msa0184880:CDS |
| TTATGTGATGAATCTCGACC+CGG | 0.607451 | 1_4:+74510543 | Msa0184880:CDS |
| GAGGTAACCTTGTCTTATAG+AGG | 0.608238 | 1_4:-74511340 | None:intergenic |
| CAAAATCAACAATACCTCCA+AGG | 0.609268 | 1_4:-74511408 | None:intergenic |
| GGCTTACGGTGGTGATAAGG+CGG | 0.619827 | 1_4:-74509861 | None:intergenic |
| TTGTTGAATGCTAAGATGAG+AGG | 0.620285 | 1_4:-74511359 | None:intergenic |
| AACTACAGTGGGAAATGTGG+AGG | 0.621918 | 1_4:-74511243 | None:intergenic |
| ATGTTGCTCATAAAAGTGGT+AGG | 0.622477 | 1_4:-74511299 | None:intergenic |
| AGCTGTTGAAGCCAGTGCAG+AGG | 0.624332 | 1_4:+74512415 | Msa0184880:CDS |
| CGGGACATACACTGAAGATG+AGG | 0.626150 | 1_4:+74512777 | Msa0184880:CDS |
| CACCGGCTTCCATTTCCATG+GGG | 0.630823 | 1_4:-74509949 | None:intergenic |
| TATCTGCGTCCATGTTGCGG+AGG | 0.634849 | 1_4:-74509895 | None:intergenic |
| GGAAGACTACACTCATGCAT+AGG | 0.648368 | 1_4:+74510485 | Msa0184880:CDS |
| AGATGAGGATGCTATAGATG+AGG | 0.654047 | 1_4:+74512792 | Msa0184880:CDS |
| ACCGGCTTCCATTTCCATGG+GGG | 0.657686 | 1_4:-74509948 | None:intergenic |
| GTTTGCAACCAAGTTCGATG+AGG | 0.658878 | 1_4:+74510684 | Msa0184880:CDS |
| ACTAGTAGGAGTAATTGCAA+AGG | 0.660440 | 1_4:+74513028 | Msa0184880:three_prime_UTR |
| GTTGGAAGAAAATCGCCGGA+AGG | 0.664727 | 1_4:+74512621 | Msa0184880:CDS |
| AAGTCAAAATTCCACCATTG+GGG | 0.670613 | 1_4:-74510651 | None:intergenic |
| GGTGTAGAAGAGAACGACGC+CGG | 0.671853 | 1_4:-74509822 | None:intergenic |
| CAGAGTCATTCGTACTACGA+AGG | 0.677196 | 1_4:-74512929 | None:intergenic |
| AACTACATAGGCAACTACAG+TGG | 0.686317 | 1_4:-74511255 | None:intergenic |
| GTAGTATCCTCTATAAGACA+AGG | 0.691493 | 1_4:+74511333 | Msa0184880:CDS |
| GGCGGCGCGAACAACTCCGG+TGG | 0.695334 | 1_4:-74509843 | None:intergenic |
| TCTCATCTTAGCATTCAACA+AGG | 0.708282 | 1_4:+74511361 | Msa0184880:CDS |
| ATAGAATGTATGAAATAACA+GGG | 0.711420 | 1_4:-74512963 | None:intergenic |
| ACTCATCTGTCAAACATCAG+GGG | 0.713135 | 1_4:+74510520 | Msa0184880:CDS |
| GTGTTGATTAGGGCTTACGG+TGG | 0.717038 | 1_4:-74509872 | None:intergenic |
| GTCAGATTGAGATATTCACA+TGG | 0.740453 | 1_4:+74511186 | Msa0184880:CDS |
| CTCTCTCGGAGACAACACGC+CGG | 0.774524 | 1_4:+74509803 | Msa0184880:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCAAACAAAATTTATTT+AGG | + | chr1_4:74510022-74510041 | Msa0184880:intron | 10.0% |
| !! | TAATATATATATATATTTGC+TGG | + | chr1_4:74510745-74510764 | Msa0184880:intron | 10.0% |
| !!! | TGTTTAAGTTATTATTTTAT+AGG | + | chr1_4:74512008-74512027 | Msa0184880:intron | 10.0% |
| !!! | TACAAAAAAAAACGTTTTTA+GGG | - | chr1_4:74510115-74510134 | None:intergenic | 15.0% |
| !!! | ATACAAAAAAAAACGTTTTT+AGG | - | chr1_4:74510116-74510135 | None:intergenic | 15.0% |
| !! | ATAAATAAATCATGACATTT+GGG | + | chr1_4:74511648-74511667 | Msa0184880:intron | 15.0% |
| !!! | ATTTTAACATTTCATTCAAT+TGG | + | chr1_4:74511882-74511901 | Msa0184880:intron | 15.0% |
| !! | ATAATAACTTAAACATGAAA+GGG | - | chr1_4:74512003-74512022 | None:intergenic | 15.0% |
| !! | AATAATAACTTAAACATGAA+AGG | - | chr1_4:74512004-74512023 | None:intergenic | 15.0% |
| !!! | TAATTTGAAATTGTGAATCA+TGG | + | chr1_4:74510155-74510174 | Msa0184880:intron | 20.0% |
| !! | AATATAACTCATTTGTGTTA+AGG | + | chr1_4:74510457-74510476 | Msa0184880:intron | 20.0% |
| !! | ATATAACTCATTTGTGTTAA+GGG | + | chr1_4:74510458-74510477 | Msa0184880:intron | 20.0% |
| !!! | ATATATATATTTGCTGGTTA+TGG | + | chr1_4:74510751-74510770 | Msa0184880:intron | 20.0% |
| !!! | GTTTTACTTATATATGCATT+CGG | + | chr1_4:74510795-74510814 | Msa0184880:intron | 20.0% |
| !! | GCATAAAAAAAAATTAAGCA+GGG | - | chr1_4:74510866-74510885 | None:intergenic | 20.0% |
| !!! | TGCTTAATTTTTTTTTATGC+CGG | + | chr1_4:74510866-74510885 | Msa0184880:intron | 20.0% |
| !! | CATGAAAACAAATAAATTGT+TGG | - | chr1_4:74511029-74511048 | None:intergenic | 20.0% |
| !!! | TATCATTTTTATAGCTTTCA+AGG | - | chr1_4:74511484-74511503 | None:intergenic | 20.0% |
| !!! | TCTAATTGATAGTTTTATCT+CGG | + | chr1_4:74511563-74511582 | Msa0184880:intron | 20.0% |
| !! | GTTCAAATTAAGTACTTAAA+AGG | - | chr1_4:74511617-74511636 | None:intergenic | 20.0% |
| !! | GATAAATAAATCATGACATT+TGG | + | chr1_4:74511647-74511666 | Msa0184880:intron | 20.0% |
| !!! | AACTTTTAAGTTTAACAGAT+TGG | + | chr1_4:74511937-74511956 | Msa0184880:intron | 20.0% |
| !!! | ACTTTTAAGTTTAACAGATT+GGG | + | chr1_4:74511938-74511957 | Msa0184880:intron | 20.0% |
| !!! | AATTTGTTTTGTTTATCTAG+TGG | + | chr1_4:74512231-74512250 | Msa0184880:intron | 20.0% |
| !! | CAAAATCAAAAGTGAAATAA+TGG | - | chr1_4:74512500-74512519 | None:intergenic | 20.0% |
| !!! | TTTTGATTTTGCATTTAGTT+AGG | + | chr1_4:74512509-74512528 | Msa0184880:intron | 20.0% |
| !! | ATAGAATGTATGAAATAACA+GGG | - | chr1_4:74512966-74512985 | None:intergenic | 20.0% |
| !! | TACTAGTATAAAAAACATCT+AGG | - | chr1_4:74513015-74513034 | None:intergenic | 20.0% |
| !!! | TAGATGTTTTTTATACTAGT+AGG | + | chr1_4:74513014-74513033 | Msa0184880:three_prime_UTR | 20.0% |
| !! | AAAACAGATACTAGATATAT+GGG | - | chr1_4:74513112-74513131 | None:intergenic | 20.0% |
| ! | GGAAAAAAACAAACAAAAAG+AGG | + | chr1_4:74510196-74510215 | Msa0184880:intron | 25.0% |
| !! | ATATCAATGTTAGAAGCATA+TGG | - | chr1_4:74510583-74510602 | None:intergenic | 25.0% |
| ! | ATTATACTGTACATGAGTTT+AGG | - | chr1_4:74510729-74510748 | None:intergenic | 25.0% |
| ! | GGCATAAAAAAAAATTAAGC+AGG | - | chr1_4:74510867-74510886 | None:intergenic | 25.0% |
| !!! | GCTTAATTTTTTTTTATGCC+GGG | + | chr1_4:74510867-74510886 | Msa0184880:intron | 25.0% |
| ! | TATACCAATAGCTTAATTAG+AGG | - | chr1_4:74510935-74510954 | None:intergenic | 25.0% |
| !!! | AAGGTGTTTGATTAATCTTT+TGG | - | chr1_4:74511703-74511722 | None:intergenic | 25.0% |
| ! | AAGTCTAACTCTTAATTCAT+AGG | - | chr1_4:74511760-74511779 | None:intergenic | 25.0% |
| !!! | CTTTTAAGTTTAACAGATTG+GGG | + | chr1_4:74511939-74511958 | Msa0184880:intron | 25.0% |
| ! | AACAAAACAAATTCGACAAA+AGG | - | chr1_4:74512224-74512243 | None:intergenic | 25.0% |
| ! | GATAGAATGTATGAAATAAC+AGG | - | chr1_4:74512967-74512986 | None:intergenic | 25.0% |
| ! | CAAAACAGATACTAGATATA+TGG | - | chr1_4:74513113-74513132 | None:intergenic | 25.0% |
| !!! | ATCTAGTATCTGTTTTGTTT+AGG | + | chr1_4:74513116-74513135 | Msa0184880:three_prime_UTR | 25.0% |
| !!! | TCTAGTATCTGTTTTGTTTA+GGG | + | chr1_4:74513117-74513136 | Msa0184880:three_prime_UTR | 25.0% |
| GTAAAGTGAAAGTGAATAAG+CGG | - | chr1_4:74510001-74510020 | None:intergenic | 30.0% | |
| TGAAATTGTGAATCATGGAA+TGG | + | chr1_4:74510160-74510179 | Msa0184880:intron | 30.0% | |
| !!! | TGGAATGGTTTTTGTTTTCA+AGG | + | chr1_4:74510175-74510194 | Msa0184880:intron | 30.0% |
| ATGAAGAAATTGGACATTGA+AGG | + | chr1_4:74510233-74510252 | Msa0184880:CDS | 30.0% | |
| !!! | ACAGGTTTTCTTTTGAAGTT+AGG | - | chr1_4:74510275-74510294 | None:intergenic | 30.0% |
| ! | TATCATCATTGTTGTTGGAA+TGG | + | chr1_4:74510295-74510314 | Msa0184880:CDS | 30.0% |
| GAAACTATATTGTGCATGTT+TGG | - | chr1_4:74510405-74510424 | None:intergenic | 30.0% | |
| TTACTTATATATGCATTCGG+TGG | + | chr1_4:74510798-74510817 | Msa0184880:intron | 30.0% | |
| CTAGTATCAATGATATCAAG+AGG | - | chr1_4:74510833-74510852 | None:intergenic | 30.0% | |
| CATAAGATCAAACAAACTCA+AGG | - | chr1_4:74510900-74510919 | None:intergenic | 30.0% | |
| TTGTCCTCTAATTAAGCTAT+TGG | + | chr1_4:74510928-74510947 | Msa0184880:intron | 30.0% | |
| GGAACAAAAGTAAAACACAT+CGG | - | chr1_4:74511052-74511071 | None:intergenic | 30.0% | |
| TGCATATAAGTTCTGTAGAT+GGG | - | chr1_4:74511073-74511092 | None:intergenic | 30.0% | |
| TTGCATATAAGTTCTGTAGA+TGG | - | chr1_4:74511074-74511093 | None:intergenic | 30.0% | |
| ACAGAAATTACCTGAAATTG+AGG | - | chr1_4:74511116-74511135 | None:intergenic | 30.0% | |
| AACTATCAATTAGATCTCAC+AGG | - | chr1_4:74511557-74511576 | None:intergenic | 30.0% | |
| !!! | TTGATTAATCTTTTGGTGTC+AGG | - | chr1_4:74511696-74511715 | None:intergenic | 30.0% |
| TTATATGTGCAATTAGAGAG+AGG | - | chr1_4:74511832-74511851 | None:intergenic | 30.0% | |
| TTAAAAGATCTTATGCTTCG+TGG | + | chr1_4:74511859-74511878 | Msa0184880:intron | 30.0% | |
| GATTCAGCTCAAATATACAA+AGG | - | chr1_4:74512077-74512096 | None:intergenic | 30.0% | |
| AAACAAATTCGACAAAAGGA+AGG | - | chr1_4:74512220-74512239 | None:intergenic | 30.0% | |
| ! | TACAGTAATTTAAGATCAGC+TGG | + | chr1_4:74512350-74512369 | Msa0184880:CDS | 30.0% |
| !! | GATGATGATGATGTTGATTT+CGG | + | chr1_4:74512757-74512776 | Msa0184880:CDS | 30.0% |
| !! | ATGATGATGATGTTGATTTC+GGG | + | chr1_4:74512758-74512777 | Msa0184880:CDS | 30.0% |
| GTTCATAAAATCACATCAGA+AGG | - | chr1_4:74512845-74512864 | None:intergenic | 30.0% | |
| ! | GATGTGATTTTATGAACGTT+TGG | + | chr1_4:74512848-74512867 | Msa0184880:exon | 30.0% |
| GAAATAACAGGGCAATAAAT+CGG | - | chr1_4:74512955-74512974 | None:intergenic | 30.0% | |
| ! | ATTGTGAGATTTTCAAACTG+CGG | - | chr1_4:74513193-74513212 | None:intergenic | 30.0% |
| ATTTCTTCATAGACTCACTC+AGG | - | chr1_4:74510223-74510242 | None:intergenic | 35.0% | |
| GAGTGAGTCTATGAAGAAAT+TGG | + | chr1_4:74510223-74510242 | Msa0184880:CDS | 35.0% | |
| CCAACAACAATGATGATAAC+AGG | - | chr1_4:74510293-74510312 | None:intergenic | 35.0% | |
| CCTGTTATCATCATTGTTGT+TGG | + | chr1_4:74510290-74510309 | Msa0184880:CDS | 35.0% | |
| GCAATGAGTTACACAAATCA+CGG | + | chr1_4:74510368-74510387 | Msa0184880:intron | 35.0% | |
| !! | ACGTAGTAGTTTTGCTGATT+TGG | + | chr1_4:74510434-74510453 | Msa0184880:intron | 35.0% |
| ATACTCATCTGTCAAACATC+AGG | + | chr1_4:74510518-74510537 | Msa0184880:CDS | 35.0% | |
| TACTCATCTGTCAAACATCA+GGG | + | chr1_4:74510519-74510538 | Msa0184880:CDS | 35.0% | |
| AAGTCAAAATTCCACCATTG+GGG | - | chr1_4:74510654-74510673 | None:intergenic | 35.0% | |
| GAAGTCAAAATTCCACCATT+GGG | - | chr1_4:74510655-74510674 | None:intergenic | 35.0% | |
| AGAAGTCAAAATTCCACCAT+TGG | - | chr1_4:74510656-74510675 | None:intergenic | 35.0% | |
| AAACTTAACCTCATCGAACT+TGG | - | chr1_4:74510695-74510714 | None:intergenic | 35.0% | |
| GTTTACATTGTCATTGTCAG+TGG | + | chr1_4:74510972-74510991 | Msa0184880:intron | 35.0% | |
| TGTTTATGCTCCTCAATTTC+AGG | + | chr1_4:74511103-74511122 | Msa0184880:intron | 35.0% | |
| TCAACTTGACTATGTTCTTG+TGG | + | chr1_4:74511154-74511173 | Msa0184880:CDS | 35.0% | |
| GTCAGATTGAGATATTCACA+TGG | + | chr1_4:74511186-74511205 | Msa0184880:CDS | 35.0% | |
| ATGTTGCTCATAAAAGTGGT+AGG | - | chr1_4:74511302-74511321 | None:intergenic | 35.0% | |
| AAGCATGTTGCTCATAAAAG+TGG | - | chr1_4:74511306-74511325 | None:intergenic | 35.0% | |
| GTAGTATCCTCTATAAGACA+AGG | + | chr1_4:74511333-74511352 | Msa0184880:CDS | 35.0% | |
| TTGTTGAATGCTAAGATGAG+AGG | - | chr1_4:74511362-74511381 | None:intergenic | 35.0% | |
| TCTCATCTTAGCATTCAACA+AGG | + | chr1_4:74511361-74511380 | Msa0184880:CDS | 35.0% | |
| CAAAATCAACAATACCTCCA+AGG | - | chr1_4:74511411-74511430 | None:intergenic | 35.0% | |
| !! | GTCTTTTAACTCACTACAAC+AGG | + | chr1_4:74511522-74511541 | Msa0184880:intron | 35.0% |
| !! | GAACTTGATAGCTGTTTTCA+AGG | - | chr1_4:74511722-74511741 | None:intergenic | 35.0% |
| GAAAACAGCTATCAAGTTCA+TGG | + | chr1_4:74511723-74511742 | Msa0184880:intron | 35.0% | |
| TTTAACAGATTGGGGTGAAA+TGG | + | chr1_4:74511947-74511966 | Msa0184880:intron | 35.0% | |
| TTAACAGATTGGGGTGAAAT+GGG | + | chr1_4:74511948-74511967 | Msa0184880:intron | 35.0% | |
| ! | AACCATTTTCCTGTAGTTTC+AGG | + | chr1_4:74512036-74512055 | Msa0184880:intron | 35.0% |
| ! | ACCATTTTCCTGTAGTTTCA+GGG | + | chr1_4:74512037-74512056 | Msa0184880:intron | 35.0% |
| GCTCAAATATACAAAGGAAG+AGG | - | chr1_4:74512071-74512090 | None:intergenic | 35.0% | |
| TCTGTTCAACAGAATTGACT+GGG | - | chr1_4:74512152-74512171 | None:intergenic | 35.0% | |
| TTCTGTTCAACAGAATTGAC+TGG | - | chr1_4:74512153-74512172 | None:intergenic | 35.0% | |
| !! | CTAGTGGATGAAAGATTTTG+AGG | + | chr1_4:74512247-74512266 | Msa0184880:intron | 35.0% |
| CAAGAGCAGTTAATACTTGT+AGG | - | chr1_4:74512453-74512472 | None:intergenic | 35.0% | |
| ! | GTTAGGTTGTATGTCTTTGA+TGG | + | chr1_4:74512526-74512545 | Msa0184880:intron | 35.0% |
| AGGAGAACATGGATAAACTT+AGG | + | chr1_4:74512641-74512660 | Msa0184880:CDS | 35.0% | |
| AGAACATGGATAAACTTAGG+AGG | + | chr1_4:74512644-74512663 | Msa0184880:CDS | 35.0% | |
| GAACATGGATAAACTTAGGA+GGG | + | chr1_4:74512645-74512664 | Msa0184880:CDS | 35.0% | |
| !! | CACTGGTTTGAAAAACAAAG+AGG | + | chr1_4:74512705-74512724 | Msa0184880:CDS | 35.0% |
| TGGTTTGAAAAACAAAGAGG+AGG | + | chr1_4:74512708-74512727 | Msa0184880:CDS | 35.0% | |
| TATGAACGTTTGGATTGCAT+CGG | + | chr1_4:74512858-74512877 | Msa0184880:three_prime_UTR | 35.0% | |
| TATAGGACCTTGACTTCATT+TGG | + | chr1_4:74512893-74512912 | Msa0184880:three_prime_UTR | 35.0% | |
| CTATCAGCATTATTCTCTCT+AGG | + | chr1_4:74512982-74513001 | Msa0184880:three_prime_UTR | 35.0% | |
| ACTAGTAGGAGTAATTGCAA+AGG | + | chr1_4:74513028-74513047 | Msa0184880:three_prime_UTR | 35.0% | |
| ATTTGCACAAAAATCGAGCA+TGG | - | chr1_4:74513057-74513076 | None:intergenic | 35.0% | |
| ! | CTCGATTTTTGTGCAAATTG+AGG | + | chr1_4:74513059-74513078 | Msa0184880:three_prime_UTR | 35.0% |
| !! | AGAAAGTACTTGAGAGTCAC+CGG | - | chr1_4:74509969-74509988 | None:intergenic | 40.0% |
| ! | ATCATTGTTGTTGGAATGGC+AGG | + | chr1_4:74510299-74510318 | Msa0184880:CDS | 40.0% |
| ACTCATTTGTGTTAAGGGAG+TGG | + | chr1_4:74510463-74510482 | Msa0184880:intron | 40.0% | |
| CTCATTTGTGTTAAGGGAGT+GGG | + | chr1_4:74510464-74510483 | Msa0184880:intron | 40.0% | |
| ACTCATCTGTCAAACATCAG+GGG | + | chr1_4:74510520-74510539 | Msa0184880:CDS | 40.0% | |
| TTATGTGATGAATCTCGACC+CGG | + | chr1_4:74510543-74510562 | Msa0184880:CDS | 40.0% | |
| GTCATGAAGCAATTCAACCT+TGG | + | chr1_4:74510628-74510647 | Msa0184880:CDS | 40.0% | |
| TATGTTCTTGTGGATACTCC+TGG | + | chr1_4:74511164-74511183 | Msa0184880:CDS | 40.0% | |
| GTGAATATCTCAATCTGACC+AGG | - | chr1_4:74511185-74511204 | None:intergenic | 40.0% | |
| ATATTCACATGGTCTGCTTC+TGG | + | chr1_4:74511197-74511216 | Msa0184880:CDS | 40.0% | |
| ACTACATAGGCAACTACAGT+GGG | - | chr1_4:74511257-74511276 | None:intergenic | 40.0% | |
| AACTACATAGGCAACTACAG+TGG | - | chr1_4:74511258-74511277 | None:intergenic | 40.0% | |
| ACGAGGTGTATCAACTACAT+AGG | - | chr1_4:74511270-74511289 | None:intergenic | 40.0% | |
| GAGGTAACCTTGTCTTATAG+AGG | - | chr1_4:74511343-74511362 | None:intergenic | 40.0% | |
| GGTGAAATGGGAAGCAATAT+TGG | + | chr1_4:74511960-74511979 | Msa0184880:intron | 40.0% | |
| ACCCTGAAACTACAGGAAAA+TGG | - | chr1_4:74512041-74512060 | None:intergenic | 40.0% | |
| TCCTGTAGTTTCAGGGTTTA+TGG | + | chr1_4:74512044-74512063 | Msa0184880:intron | 40.0% | |
| CCTGTAGTTTCAGGGTTTAT+GGG | + | chr1_4:74512045-74512064 | Msa0184880:intron | 40.0% | |
| CAACAGAATTGACTGGGTAT+TGG | - | chr1_4:74512146-74512165 | None:intergenic | 40.0% | |
| TTTAACTCAGAGCCTTTCTC+TGG | + | chr1_4:74512313-74512332 | Msa0184880:CDS | 40.0% | |
| GTTTATCCATGTTCTCCTTC+CGG | - | chr1_4:74512639-74512658 | None:intergenic | 40.0% | |
| AGATGAGGATGCTATAGATG+AGG | + | chr1_4:74512792-74512811 | Msa0184880:CDS | 40.0% | |
| GCATGTACCAAATGAAGTCA+AGG | - | chr1_4:74512903-74512922 | None:intergenic | 40.0% | |
| ! | AGATTTTCAAACTGCGGATG+TGG | - | chr1_4:74513187-74513206 | None:intergenic | 40.0% |
| !! | AGGGTGTTGATTAGGGCTTA+CGG | - | chr1_4:74509878-74509897 | None:intergenic | 45.0% |
| AAGTGAATAAGCGGCGAGTT+TGG | - | chr1_4:74509992-74510011 | None:intergenic | 45.0% | |
| GACATTGAAGGTTCCTCTTC+TGG | + | chr1_4:74510245-74510264 | Msa0184880:CDS | 45.0% | |
| GAAGTTAGGTGAACCAGAAG+AGG | - | chr1_4:74510261-74510280 | None:intergenic | 45.0% | |
| GGAAGACTACACTCATGCAT+AGG | + | chr1_4:74510485-74510504 | Msa0184880:CDS | 45.0% | |
| GACTACACTCATGCATAGGT+TGG | + | chr1_4:74510489-74510508 | Msa0184880:CDS | 45.0% | |
| !! | TATGGAAGTGTCATGACAGC+CGG | - | chr1_4:74510565-74510584 | None:intergenic | 45.0% |
| GTTTGCAACCAAGTTCGATG+AGG | + | chr1_4:74510684-74510703 | Msa0184880:CDS | 45.0% | |
| CAAACTCAAGGAAAGCTACC+CGG | - | chr1_4:74510888-74510907 | None:intergenic | 45.0% | |
| ! | CATTGTCAGTGGCTCGTTTT+AGG | + | chr1_4:74510983-74511002 | Msa0184880:intron | 45.0% |
| AACTACAGTGGGAAATGTGG+AGG | - | chr1_4:74511246-74511265 | None:intergenic | 45.0% | |
| AGCACAACATGAGTTTGCCT+TGG | + | chr1_4:74511391-74511410 | Msa0184880:CDS | 45.0% | |
| ACAACATGAGTTTGCCTTGG+AGG | + | chr1_4:74511394-74511413 | Msa0184880:CDS | 45.0% | |
| CCCATAAACCCTGAAACTAC+AGG | - | chr1_4:74512048-74512067 | None:intergenic | 45.0% | |
| ATTCATCCAGTGCCAGAGAA+AGG | - | chr1_4:74512328-74512347 | None:intergenic | 45.0% | |
| TTCCATGTATTCCTCTGCAC+TGG | - | chr1_4:74512429-74512448 | None:intergenic | 45.0% | |
| ACGTGAAGAGAAACAGCTGT+TGG | + | chr1_4:74512603-74512622 | Msa0184880:CDS | 45.0% | |
| AGCTGTTGGAAGAAAATCGC+CGG | + | chr1_4:74512617-74512636 | Msa0184880:CDS | 45.0% | |
| GGATAAACTTAGGAGGGAGA+TGG | + | chr1_4:74512651-74512670 | Msa0184880:CDS | 45.0% | |
| ! | GAAACTGTAGTGTTGAGCAC+TGG | + | chr1_4:74512688-74512707 | Msa0184880:CDS | 45.0% |
| GAAAAACAAAGAGGAGGACG+AGG | + | chr1_4:74512714-74512733 | Msa0184880:CDS | 45.0% | |
| GGATGAAGAGGATGAGGAAA+TGG | + | chr1_4:74512735-74512754 | Msa0184880:CDS | 45.0% | |
| AGATGAGGACGAAGATGAAG+AGG | + | chr1_4:74512807-74512826 | Msa0184880:CDS | 45.0% | |
| ATCGGAACTAGCGCTTGTAT+AGG | + | chr1_4:74512876-74512895 | Msa0184880:three_prime_UTR | 45.0% | |
| CAGAGTCATTCGTACTACGA+AGG | - | chr1_4:74512932-74512951 | None:intergenic | 45.0% | |
| GTCGTTCTCTTCTACACCAC+CGG | + | chr1_4:74509827-74509846 | Msa0184880:five_prime_UTR | 50.0% | |
| TAGGGCTTACGGTGGTGATA+AGG | - | chr1_4:74509867-74509886 | None:intergenic | 50.0% | |
| !! | GTGTTGATTAGGGCTTACGG+TGG | - | chr1_4:74509875-74509894 | None:intergenic | 50.0% |
| !! | GTTGCGGAGGGTGTTGATTA+GGG | - | chr1_4:74509885-74509904 | None:intergenic | 50.0% |
| !! | TGTTGCGGAGGGTGTTGATT+AGG | - | chr1_4:74509886-74509905 | None:intergenic | 50.0% |
| AATCAACACCCTCCGCAACA+TGG | + | chr1_4:74509886-74509905 | Msa0184880:exon | 50.0% | |
| CGTTATCTGCGTCCATGTTG+CGG | - | chr1_4:74509901-74509920 | None:intergenic | 50.0% | |
| !! | ATTTCCATGGGGGTGTCTTC+GGG | - | chr1_4:74509941-74509960 | None:intergenic | 50.0% |
| !! | CATTTCCATGGGGGTGTCTT+CGG | - | chr1_4:74509942-74509961 | None:intergenic | 50.0% |
| !! | TCACCGGCTTCCATTTCCAT+GGG | - | chr1_4:74509953-74509972 | None:intergenic | 50.0% |
| GAGTAACGCTGTGTCTATCG+TGG | - | chr1_4:74510079-74510098 | None:intergenic | 50.0% | |
| !! | ATGGAAGTGTCATGACAGCC+GGG | - | chr1_4:74510564-74510583 | None:intergenic | 50.0% |
| CAATTCAACCTTGGCCCCAA+TGG | + | chr1_4:74510637-74510656 | Msa0184880:CDS | 50.0% | |
| AAATTCCACCATTGGGGCCA+AGG | - | chr1_4:74510648-74510667 | None:intergenic | 50.0% | |
| GGCAACTACAGTGGGAAATG+TGG | - | chr1_4:74511249-74511268 | None:intergenic | 50.0% | |
| ! | GTGGTAGGATTTTCTGCACG+AGG | - | chr1_4:74511287-74511306 | None:intergenic | 50.0% |
| TTTGGGCTGTGTCTGTGATG+AGG | + | chr1_4:74511665-74511684 | Msa0184880:intron | 50.0% | |
| GCTGTGTCTGTGATGAGGTT+TGG | + | chr1_4:74511670-74511689 | Msa0184880:intron | 50.0% | |
| GATCTGAACTTGCAGCTGCT+TGG | - | chr1_4:74512277-74512296 | None:intergenic | 50.0% | |
| GCTGGAGTTTCTGCAGTTAC+TGG | + | chr1_4:74512368-74512387 | Msa0184880:CDS | 50.0% | |
| GTTTCTGCAGTTACTGGTGC+TGG | + | chr1_4:74512374-74512393 | Msa0184880:CDS | 50.0% | |
| ! | GTTACTGGTGCTGGAATCGA+AGG | + | chr1_4:74512383-74512402 | Msa0184880:CDS | 50.0% |
| AGCCAGTGCAGAGGAATACA+TGG | + | chr1_4:74512424-74512443 | Msa0184880:CDS | 50.0% | |
| GTTGGAAGAAAATCGCCGGA+AGG | + | chr1_4:74512621-74512640 | Msa0184880:CDS | 50.0% | |
| AAATCGCCGGAAGGAGAACA+TGG | + | chr1_4:74512630-74512649 | Msa0184880:CDS | 50.0% | |
| AGGAGGGAGATGGAGAAATC+TGG | + | chr1_4:74512661-74512680 | Msa0184880:CDS | 50.0% | |
| AGGGAGATGGAGAAATCTGG+AGG | + | chr1_4:74512664-74512683 | Msa0184880:CDS | 50.0% | |
| CGGGACATACACTGAAGATG+AGG | + | chr1_4:74512777-74512796 | Msa0184880:CDS | 50.0% | |
| GGTGTAGAAGAGAACGACGC+CGG | - | chr1_4:74509825-74509844 | None:intergenic | 55.0% | |
| GGCTTACGGTGGTGATAAGG+CGG | - | chr1_4:74509864-74509883 | None:intergenic | 55.0% | |
| ATCTGCGTCCATGTTGCGGA+GGG | - | chr1_4:74509897-74509916 | None:intergenic | 55.0% | |
| TATCTGCGTCCATGTTGCGG+AGG | - | chr1_4:74509898-74509917 | None:intergenic | 55.0% | |
| !! | TTTCCATGGGGGTGTCTTCG+GGG | - | chr1_4:74509940-74509959 | None:intergenic | 55.0% |
| CGAAGACACCCCCATGGAAA+TGG | + | chr1_4:74509940-74509959 | Msa0184880:CDS | 55.0% | |
| ACCCCCATGGAAATGGAAGC+CGG | + | chr1_4:74509947-74509966 | Msa0184880:CDS | 55.0% | |
| ! | ACCGGCTTCCATTTCCATGG+GGG | - | chr1_4:74509951-74509970 | None:intergenic | 55.0% |
| !! | CACCGGCTTCCATTTCCATG+GGG | - | chr1_4:74509952-74509971 | None:intergenic | 55.0% |
| !! | GTCACCGGCTTCCATTTCCA+TGG | - | chr1_4:74509954-74509973 | None:intergenic | 55.0% |
| GTTGGAATGGCAGGTCAGTC+AGG | + | chr1_4:74510308-74510327 | Msa0184880:intron | 55.0% | |
| TTCAACCTTGGCCCCAATGG+TGG | + | chr1_4:74510640-74510659 | Msa0184880:CDS | 55.0% | |
| TCAGAGCCTTTCTCTGGCAC+TGG | + | chr1_4:74512319-74512338 | Msa0184880:CDS | 55.0% | |
| AGCTGTTGAAGCCAGTGCAG+AGG | + | chr1_4:74512415-74512434 | Msa0184880:CDS | 55.0% | |
| AGAGGAGGACGAGGATGAAG+AGG | + | chr1_4:74512723-74512742 | Msa0184880:CDS | 55.0% | |
| GGACGAGGATGAAGAGGATG+AGG | + | chr1_4:74512729-74512748 | Msa0184880:CDS | 55.0% | |
| CTCACACACGCGAGCTCTCT+CGG | + | chr1_4:74509789-74509808 | Msa0184880:five_prime_UTR | 60.0% | |
| CTCTCTCGGAGACAACACGC+CGG | + | chr1_4:74509803-74509822 | Msa0184880:five_prime_UTR | 60.0% | |
| TAAGGCGGCGCGAACAACTC+CGG | - | chr1_4:74509849-74509868 | None:intergenic | 60.0% | |
| TAACCCCGAAGACACCCCCA+TGG | + | chr1_4:74509934-74509953 | Msa0184880:CDS | 60.0% | |
| GGCGGCGCGAACAACTCCGG+TGG | - | chr1_4:74509846-74509865 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 74509765 | 74513231 | 74509765 | ID=Msa0184880;Name=Msa0184880 |
| chr1_4 | mRNA | 74509765 | 74513231 | 74509765 | ID=Msa0184880-mRNA-1;Parent=Msa0184880;Name=Msa0184880-mRNA-1;_AED=0.06;_eAED=0.06;_QI=140|1|1|1|1|1|6|382|395 |
| chr1_4 | exon | 74509765 | 74509979 | 74509765 | ID=Msa0184880-mRNA-1:exon:25428;Parent=Msa0184880-mRNA-1 |
| chr1_4 | exon | 74510197 | 74510320 | 74510197 | ID=Msa0184880-mRNA-1:exon:25429;Parent=Msa0184880-mRNA-1 |
| chr1_4 | exon | 74510479 | 74510705 | 74510479 | ID=Msa0184880-mRNA-1:exon:25430;Parent=Msa0184880-mRNA-1 |
| chr1_4 | exon | 74511125 | 74511415 | 74511125 | ID=Msa0184880-mRNA-1:exon:25431;Parent=Msa0184880-mRNA-1 |
| chr1_4 | exon | 74512251 | 74512456 | 74512251 | ID=Msa0184880-mRNA-1:exon:25432;Parent=Msa0184880-mRNA-1 |
| chr1_4 | exon | 74512585 | 74513231 | 74512585 | ID=Msa0184880-mRNA-1:exon:25433;Parent=Msa0184880-mRNA-1 |
| chr1_4 | five_prime_UTR | 74509765 | 74509904 | 74509765 | ID=Msa0184880-mRNA-1:five_prime_utr;Parent=Msa0184880-mRNA-1 |
| chr1_4 | CDS | 74509905 | 74509979 | 74509905 | ID=Msa0184880-mRNA-1:cds;Parent=Msa0184880-mRNA-1 |
| chr1_4 | CDS | 74510197 | 74510320 | 74510197 | ID=Msa0184880-mRNA-1:cds;Parent=Msa0184880-mRNA-1 |
| chr1_4 | CDS | 74510479 | 74510705 | 74510479 | ID=Msa0184880-mRNA-1:cds;Parent=Msa0184880-mRNA-1 |
| chr1_4 | CDS | 74511125 | 74511415 | 74511125 | ID=Msa0184880-mRNA-1:cds;Parent=Msa0184880-mRNA-1 |
| chr1_4 | CDS | 74512251 | 74512456 | 74512251 | ID=Msa0184880-mRNA-1:cds;Parent=Msa0184880-mRNA-1 |
| chr1_4 | CDS | 74512585 | 74512849 | 74512585 | ID=Msa0184880-mRNA-1:cds;Parent=Msa0184880-mRNA-1 |
| chr1_4 | three_prime_UTR | 74512850 | 74513231 | 74512850 | ID=Msa0184880-mRNA-1:three_prime_utr;Parent=Msa0184880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
