AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0793200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0793200 MtrunA17_Chr1g0192131 84.058 414 39 8 1 399 1 402 0.0 564
Msa0793200 MtrunA17_Chr7g0272571 35.088 399 176 16 18 399 33 365 1.24e-33 129
Msa0793200 MtrunA17_Chr7g0269081 44.030 134 63 3 1 130 1 126 6.21e-20 89.7
Msa0793200 MtrunA17_Chr1g0208301 52.000 75 35 1 9 83 4 77 1.39e-17 83.6
Msa0793200 MtrunA17_Chr2g0287751 56.944 72 30 1 15 86 7 77 1.53e-17 84.3
Msa0793200 MtrunA17_Chr4g0065651 54.054 74 33 1 13 86 5 77 8.09e-17 82.0
Msa0793200 MtrunA17_Chr0c22g0493881 54.054 74 33 1 13 86 5 77 1.10e-16 80.9
Msa0793200 MtrunA17_Chr4g0065621 54.054 74 33 1 13 86 5 77 7.23e-16 78.6
Msa0793200 MtrunA17_Chr2g0287741 59.155 71 28 1 18 88 15 84 1.11e-15 79.0
Msa0793200 MtrunA17_Chr7g0218981 39.535 86 47 2 15 96 1 85 1.58e-15 72.8
Msa0793200 MtrunA17_Chr1g0191671 49.275 69 34 1 15 83 7 74 5.14e-15 76.6
Msa0793200 MtrunA17_Chr2g0296001 48.235 85 43 1 1 85 56 139 1.13e-14 74.7
Msa0793200 MtrunA17_Chr4g0036931 41.176 68 40 0 17 84 27 94 8.51e-14 68.6
Msa0793200 MtrunA17_Chr3g0111541 51.471 68 32 1 15 82 9 75 2.94e-13 68.6
Msa0793200 MtrunA17_Chr1g0198341 41.250 80 46 1 15 94 1 79 3.26e-13 64.7
Msa0793200 MtrunA17_Chr8g0382721 48.485 66 33 1 19 84 30 94 1.34e-12 65.1
Msa0793200 MtrunA17_Chr3g0145621 36.486 74 47 0 11 84 19 92 1.82e-12 65.1
Msa0793200 MtrunA17_Chr3g0115421 46.032 63 33 1 22 84 30 91 6.91e-12 63.2
Msa0793200 MtrunA17_Chr2g0285561 39.423 104 58 4 19 119 9 110 1.39e-11 64.7
Msa0793200 MtrunA17_Chr3g0124411 44.776 67 36 1 18 84 30 95 3.45e-11 61.2
Msa0793200 MtrunA17_Chr1g0160201 37.500 72 44 1 13 84 20 90 4.80e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0793200 AT5G27690.1 50.495 101 45 2 9 105 21 120 3.30e-22 97.1
Msa0793200 AT1G56210.1 59.420 69 27 1 17 85 39 106 1.87e-18 86.7
Msa0793200 AT3G06130.2 52.703 74 34 1 13 86 5 77 8.50e-17 81.6
Msa0793200 AT3G06130.1 52.703 74 34 1 13 86 5 77 1.25e-16 82.0
Msa0793200 AT5G19090.2 52.703 74 34 1 13 86 5 77 2.14e-16 81.3
Msa0793200 AT5G19090.3 52.703 74 34 1 13 86 5 77 2.14e-16 81.3
Msa0793200 AT5G19090.5 52.703 74 34 1 13 86 5 77 2.62e-16 81.3
Msa0793200 AT5G19090.4 52.703 74 34 1 13 86 5 77 2.62e-16 81.3
Msa0793200 AT5G19090.1 52.703 74 34 1 13 86 5 77 2.62e-16 81.3
Msa0793200 AT1G23000.1 48.750 80 39 2 15 93 10 88 3.21e-16 79.7
Msa0793200 AT1G23000.2 48.750 80 39 2 15 93 70 148 9.11e-16 79.0
Msa0793200 AT5G37860.1 54.545 66 29 1 18 83 10 74 4.76e-15 75.1
Msa0793200 AT3G56240.3 36.449 107 65 2 18 122 3 108 4.82e-14 68.9
Msa0793200 AT3G56240.1 36.449 107 65 2 18 122 3 108 4.82e-14 68.9
Msa0793200 AT3G05220.1 47.826 69 35 1 15 83 7 74 1.86e-13 72.4
Msa0793200 AT1G66240.1 40.541 74 43 1 18 91 33 105 2.00e-12 63.9
Msa0793200 AT5G66110.3 32.941 85 56 1 1 84 1 85 2.52e-12 64.7
Msa0793200 AT5G66110.1 32.941 85 56 1 1 84 1 85 2.52e-12 64.7
Msa0793200 AT5G66110.2 38.983 59 36 0 26 84 1 59 3.02e-11 60.8
Msa0793200 AT3G56240.2 34.343 99 62 2 26 122 1 98 3.34e-11 60.5
Msa0793200 AT4G38580.1 37.313 67 42 0 18 84 26 92 4.01e-11 61.2
Msa0793200 AT4G38580.2 37.313 67 42 0 18 84 26 92 4.01e-11 61.2
Msa0793200 AT4G35060.1 34.722 72 47 0 13 84 20 91 5.01e-11 61.2
Msa0793200 AT4G08570.1 41.176 68 38 2 18 84 26 92 9.71e-11 60.1

Find 108 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGTTCTTCTGGGTCTTTC+TGG 0.102017 5_3:+5185249 Msa0793200:three_prime_UTR
TCTTTGTTCTTCTCTGGTTT+TGG 0.218419 5_3:-5184152 None:intergenic
TGTGATGAATTATACGATTC+TGG 0.253530 5_3:-5184986 None:intergenic
GTAGAATAATAGAGTTCTTC+TGG 0.254935 5_3:+5185239 Msa0793200:three_prime_UTR
GCCGTTAACTTCAACGTTCT+TGG 0.279229 5_3:-5184276 None:intergenic
ACTACTTTGTTTGCTTTGAA+TGG 0.306622 5_3:+5185205 Msa0793200:three_prime_UTR
TGAAATACATACAACTTGTA+TGG 0.308571 5_3:+5185099 Msa0793200:three_prime_UTR
TGTTTCTCTTTGTTCTTCTC+TGG 0.327013 5_3:-5184158 None:intergenic
AACATGCTTCCCTGTCTTGT+TGG 0.331354 5_3:-5184087 None:intergenic
CCCGGTTGTGGAACCTTCGT+TGG 0.354242 5_3:-5184348 None:intergenic
GGTTCATACGTGTACGGCCT+TGG 0.369283 5_3:-5184965 None:intergenic
TTTCATGGGCAAATACATTC+AGG 0.369625 5_3:+5184710 Msa0793200:CDS
CTGTCTTGTTGGTCAGTTTG+TGG 0.373603 5_3:-5184076 None:intergenic
GCACCGGGTACTGGTGGTTC+AGG 0.381070 5_3:+5184647 Msa0793200:CDS
AAAGCGTACTTTGAAATTGA+TGG 0.384277 5_3:-5183506 None:intergenic
CCCAACGAAGGTTCCACAAC+CGG 0.387354 5_3:+5184347 Msa0793200:CDS
ACTGTTTGCTTTCTCACCTC+TGG 0.389171 5_3:-5184404 None:intergenic
GCTATCACCACCAGTGTTAC+CGG 0.393369 5_3:-5184531 None:intergenic
CTTTGTTTGCTTTGAATGGA+TGG 0.405181 5_3:+5185209 Msa0793200:three_prime_UTR
ACCAGTGTTACCGGTTGAAC+CGG 0.408584 5_3:-5184522 None:intergenic
TCATGTGATTTGTAATCATT+TGG 0.414052 5_3:+5185062 Msa0793200:exon
TTCTCGGCTACCGGTTTGGC+TGG 0.414295 5_3:-5184434 None:intergenic
GGTTCCACAACCGGGAAAAC+CGG 0.417195 5_3:+5184356 Msa0793200:CDS
CTTCACTTCAAACTTTCAAA+TGG 0.418439 5_3:+5183573 Msa0793200:exon
TCCAAGAACGTTGAAGTTAA+CGG 0.422113 5_3:+5184275 Msa0793200:CDS
AACTTCAACGTTCTTGGATG+TGG 0.423011 5_3:-5184270 None:intergenic
AATGAGAAAACCGGTTCAAC+CGG 0.423174 5_3:+5184512 Msa0793200:CDS
CAGGGAAGCATGTTGAGCTT+TGG 0.426685 5_3:+5184096 Msa0793200:CDS
ATGACGTGGCGGTACTTCAT+TGG 0.427491 5_3:-5184744 None:intergenic
TTCCGTGATGCACCGGGTAC+TGG 0.429866 5_3:+5184638 Msa0793200:CDS
CTTGCAGCCTGCGCAGTGAA+TGG 0.433758 5_3:-5183785 None:intergenic
TTTCACCCACCGCAGTACTA+TGG 0.437794 5_3:+5184782 Msa0793200:CDS
GTGGCGGTACTTCATTGGTT+AGG 0.440696 5_3:-5184739 None:intergenic
AGTTTGAAGTGAAGGAGAAA+AGG 0.440825 5_3:-5183564 None:intergenic
GTACTGGTGGTTCAGGTAAC+CGG 0.450368 5_3:+5184654 Msa0793200:CDS
CGGTCAAATGGTCAATTTCA+AGG 0.454759 5_3:+5184674 Msa0793200:CDS
CCGGTTGTGGAACCTTCGTT+GGG 0.457013 5_3:-5184347 None:intergenic
CAAAAGCTTCAAAAGGAAGT+TGG 0.457861 5_3:+5185163 Msa0793200:three_prime_UTR
GATGAATACGGGAAATGAAA+TGG 0.459560 5_3:+5184934 Msa0793200:CDS
GGTTCTTCATTATCATCGTT+AGG 0.461785 5_3:-5184482 None:intergenic
ATACAACTTGTATGGGGCAT+GGG 0.471048 5_3:+5185107 Msa0793200:three_prime_UTR
TGATGGCTCACGGTAACAAC+CGG 0.471619 5_3:-5184836 None:intergenic
TAGAATAATAGAGTTCTTCT+GGG 0.474816 5_3:+5185240 Msa0793200:three_prime_UTR
GAAATACATACAACTTGTAT+GGG 0.475009 5_3:+5185100 Msa0793200:three_prime_UTR
CACATGACATTACACGCATT+AGG 0.475926 5_3:-5185046 None:intergenic
ATCACATGCGCGTATTGATA+CGG 0.476164 5_3:-5184914 None:intergenic
CACAAACTGACCAACAAGAC+AGG 0.483302 5_3:+5184077 Msa0793200:CDS
GAAAACAGCAACAACGGAAC+AGG 0.484637 5_3:+5184233 Msa0793200:CDS
ATCAGAGCAAAAGCTTCAAA+AGG 0.490471 5_3:+5185156 Msa0793200:three_prime_UTR
TACGTGTACGGCCTTGGCTG+AGG 0.491015 5_3:-5184959 None:intergenic
CTTGAAATTGACCATTTGAC+CGG 0.491863 5_3:-5184673 None:intergenic
AAAGTCTCCATTCACTGCGC+AGG 0.492565 5_3:+5183778 Msa0793200:CDS
AGTGGTGTTACCAGCCAAAC+CGG 0.494179 5_3:+5184424 Msa0793200:CDS
GGTTCAGGTAACCGGTCAAA+TGG 0.494989 5_3:+5184662 Msa0793200:CDS
GCTTTGAATGGATGGGAAGT+TGG 0.505773 5_3:+5185217 Msa0793200:three_prime_UTR
TGAACACTTCCGTGATGCAC+CGG 0.507152 5_3:+5184631 Msa0793200:CDS
GTGATTTGTAATCATTTGGT+TGG 0.509685 5_3:+5185066 Msa0793200:exon
AAGCGTACTTTGAAATTGAT+GGG 0.509913 5_3:-5183505 None:intergenic
CATTTGAAAGTTTGAAGTGA+AGG 0.514068 5_3:-5183572 None:intergenic
TACAACTTGTATGGGGCATG+GGG 0.520413 5_3:+5185108 Msa0793200:three_prime_UTR
TTTGTTTGCTTTGAATGGAT+GGG 0.520807 5_3:+5185210 Msa0793200:three_prime_UTR
TATCCTAGCAGCAGTAGTTA+CGG 0.527016 5_3:+5184866 Msa0793200:CDS
GCTAAAAGCGGCAACGGAAG+CGG 0.527918 5_3:+5184305 Msa0793200:CDS
TCTCTGATATATATCATACT+AGG 0.538862 5_3:+5185297 Msa0793200:three_prime_UTR
ATACGCGCATGTGATGAATA+CGG 0.539599 5_3:+5184922 Msa0793200:CDS
ACCGGTTCAACCGGTAACAC+TGG 0.546173 5_3:+5184521 Msa0793200:CDS
GCAGCAGCAAAATGAGATTG+AGG 0.556418 5_3:-5184809 None:intergenic
TACGCGCATGTGATGAATAC+GGG 0.564097 5_3:+5184923 Msa0793200:CDS
TGCGCGTATTGATACGGTTG+TGG 0.564403 5_3:-5184908 None:intergenic
CATACAACTTGTATGGGGCA+TGG 0.568161 5_3:+5185106 Msa0793200:three_prime_UTR
AACAGTGAAAACAGCAACAA+CGG 0.572955 5_3:+5184227 Msa0793200:CDS
CCAACGAAGGTTCCACAACC+GGG 0.575422 5_3:+5184348 Msa0793200:CDS
CCATTGACGAATGAGAAAAC+CGG 0.578008 5_3:+5184503 Msa0793200:CDS
GAACACTTCCGTGATGCACC+GGG 0.582325 5_3:+5184632 Msa0793200:CDS
GCACCGTAACTACTGCTGCT+AGG 0.585225 5_3:-5184869 None:intergenic
TGCTAGGATACGCTGTATGA+TGG 0.586279 5_3:-5184853 None:intergenic
AACACCGCTAAAAGCGGCAA+CGG 0.586332 5_3:+5184299 Msa0793200:CDS
TTACCTGAACCACCAGTACC+CGG 0.601937 5_3:-5184650 None:intergenic
CACCAGTACCCGGTGCATCA+CGG 0.602569 5_3:-5184640 None:intergenic
CGTGATGCACCGGGTACTGG+TGG 0.603532 5_3:+5184641 Msa0793200:CDS
TTCACAACATCTCAACTACA+AGG 0.605083 5_3:+5183624 Msa0793200:CDS
ATGAAATGGAGCCTCAGCCA+AGG 0.607085 5_3:+5184948 Msa0793200:CDS
AACGGCAACACCGCTAAAAG+CGG 0.614579 5_3:+5184293 Msa0793200:CDS
GGAGGACCATAGTACTGCGG+TGG 0.622560 5_3:-5184788 None:intergenic
TTCAGCTTGTGTCTCTGATG+CGG 0.631924 5_3:-5183596 None:intergenic
AAAATTCTTCAAAACATACA+AGG 0.632084 5_3:+5183820 Msa0793200:CDS
ACAAACTGACCAACAAGACA+GGG 0.636532 5_3:+5184078 Msa0793200:CDS
GATTCTGGTTCATACGTGTA+CGG 0.638610 5_3:-5184971 None:intergenic
AAATAAACAAAAGAATCTGA+CGG 0.643148 5_3:-5185010 None:intergenic
ATACGCTGTATGATGGCTCA+CGG 0.643410 5_3:-5184846 None:intergenic
AACACTGGTGGTGATAGCAG+TGG 0.647804 5_3:+5184536 Msa0793200:CDS
GAGGACCATAGTACTGCGGT+GGG 0.654907 5_3:-5184787 None:intergenic
TGGCTCACGGTAACAACCGG+TGG 0.659488 5_3:-5184833 None:intergenic
AAATACATACAACTTGTATG+GGG 0.662949 5_3:+5185101 Msa0793200:three_prime_UTR
ACAACTTGTATGGGGCATGG+GGG 0.663201 5_3:+5185109 Msa0793200:three_prime_UTR
GCGTATTGATACGGTTGTGG+AGG 0.666718 5_3:-5184905 None:intergenic
GGTTCAACCGGTAACACTGG+TGG 0.667820 5_3:+5184524 Msa0793200:CDS
CTCTTGAACATGTACCACGC+CGG 0.671118 5_3:-5184375 None:intergenic
TGATATATATCAGAGAGGCA+AGG 0.673407 5_3:-5185290 None:intergenic
GCAGCAAAATGAGATTGAGG+AGG 0.681939 5_3:-5184806 None:intergenic
AGAGGTGAGAAAGCAAACAG+TGG 0.698353 5_3:+5184406 Msa0793200:CDS
AAAGTTAACAAACCCAACGA+AGG 0.699189 5_3:+5184335 Msa0793200:CDS
TGTTCAAGAGCTAAAGCCAG+AGG 0.702356 5_3:+5184388 Msa0793200:CDS
CACAACCGGGAAAACCGGCG+TGG 0.709165 5_3:+5184361 Msa0793200:CDS
TGTTCGTTAATGTAATGACG+TGG 0.709464 5_3:-5184758 None:intergenic
TCGTTAATGTAATGACGTGG+CGG 0.723759 5_3:-5184755 None:intergenic
TAGTATGATATATATCAGAG+AGG 0.740631 5_3:-5185295 None:intergenic
TGAGGAGGACCATAGTACTG+CGG 0.754897 5_3:-5184791 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAAAGTAAAAAATAA+AGG - chr5_3:5183879-5183898 None:intergenic 10.0%
!! AAAATGAAAGTAAAAAATAA+AGG - chr5_3:5183879-5183898 None:intergenic 10.0%
!! AAAATTCTTCAAAACATACA+AGG + chr5_3:5183820-5183839 Msa0793200:CDS 20.0%
!! CAAAGAATGAATACTAAAAA+TGG - chr5_3:5183921-5183940 None:intergenic 20.0%
!!! TTTTAGTATTCATTCTTTGA+AGG + chr5_3:5183922-5183941 Msa0793200:intron 20.0%
!! TTTAGTATTCATTCTTTGAA+GGG + chr5_3:5183923-5183942 Msa0793200:intron 20.0%
!!! TTTATACTTTTCTGTAATCT+AGG + chr5_3:5183978-5183997 Msa0793200:intron 20.0%
!! TTGAAAAAGAAGAAAAAGAA+AGG + chr5_3:5184560-5184579 Msa0793200:CDS 20.0%
!! TGAAAAAGAAGAAAAAGAAA+GGG + chr5_3:5184561-5184580 Msa0793200:CDS 20.0%
!! AAATAAACAAAAGAATCTGA+CGG - chr5_3:5185013-5185032 None:intergenic 20.0%
!! AAAATTCTTCAAAACATACA+AGG + chr5_3:5183820-5183839 Msa0793200:CDS 20.0%
!! CAAAGAATGAATACTAAAAA+TGG - chr5_3:5183921-5183940 None:intergenic 20.0%
!!! TTTTAGTATTCATTCTTTGA+AGG + chr5_3:5183922-5183941 Msa0793200:intron 20.0%
!! TTTAGTATTCATTCTTTGAA+GGG + chr5_3:5183923-5183942 Msa0793200:intron 20.0%
!!! TTTATACTTTTCTGTAATCT+AGG + chr5_3:5183978-5183997 Msa0793200:intron 20.0%
!! TTGAAAAAGAAGAAAAAGAA+AGG + chr5_3:5184560-5184579 Msa0793200:CDS 20.0%
!! TGAAAAAGAAGAAAAAGAAA+GGG + chr5_3:5184561-5184580 Msa0793200:CDS 20.0%
!! AAATAAACAAAAGAATCTGA+CGG - chr5_3:5185013-5185032 None:intergenic 20.0%
! AATGAAATGAAAGTAAGAGA+TGG - chr5_3:5183663-5183682 None:intergenic 25.0%
! GCAACAAAAAGTAATAGTAA+CGG + chr5_3:5184028-5184047 Msa0793200:CDS 25.0%
! CAACAAAAAGTAATAGTAAC+GGG + chr5_3:5184029-5184048 Msa0793200:CDS 25.0%
! AACAAAAAGTAATAGTAACG+GGG + chr5_3:5184030-5184049 Msa0793200:CDS 25.0%
!!! TTCTTCTTTTTTGATTCTGT+TGG - chr5_3:5184128-5184147 None:intergenic 25.0%
!! GTCAAAGTAGTAATTTTCAT+GGG + chr5_3:5184696-5184715 Msa0793200:CDS 25.0%
!! TCATGTGATTTGTAATCATT+TGG + chr5_3:5185062-5185081 Msa0793200:exon 25.0%
! TGAAATACATACAACTTGTA+TGG + chr5_3:5185099-5185118 Msa0793200:three_prime_UTR 25.0%
! GAAATACATACAACTTGTAT+GGG + chr5_3:5185100-5185119 Msa0793200:three_prime_UTR 25.0%
! AAATACATACAACTTGTATG+GGG + chr5_3:5185101-5185120 Msa0793200:three_prime_UTR 25.0%
! TAGAATAATAGAGTTCTTCT+GGG + chr5_3:5185240-5185259 Msa0793200:three_prime_UTR 25.0%
! TAGTATGATATATATCAGAG+AGG - chr5_3:5185298-5185317 None:intergenic 25.0%
! TCTCTGATATATATCATACT+AGG + chr5_3:5185297-5185316 Msa0793200:three_prime_UTR 25.0%
! AATGAAATGAAAGTAAGAGA+TGG - chr5_3:5183663-5183682 None:intergenic 25.0%
! GCAACAAAAAGTAATAGTAA+CGG + chr5_3:5184028-5184047 Msa0793200:CDS 25.0%
! CAACAAAAAGTAATAGTAAC+GGG + chr5_3:5184029-5184048 Msa0793200:CDS 25.0%
! AACAAAAAGTAATAGTAACG+GGG + chr5_3:5184030-5184049 Msa0793200:CDS 25.0%
!!! TTCTTCTTTTTTGATTCTGT+TGG - chr5_3:5184128-5184147 None:intergenic 25.0%
!! GTCAAAGTAGTAATTTTCAT+GGG + chr5_3:5184696-5184715 Msa0793200:CDS 25.0%
!! TCATGTGATTTGTAATCATT+TGG + chr5_3:5185062-5185081 Msa0793200:exon 25.0%
! TGAAATACATACAACTTGTA+TGG + chr5_3:5185099-5185118 Msa0793200:three_prime_UTR 25.0%
! GAAATACATACAACTTGTAT+GGG + chr5_3:5185100-5185119 Msa0793200:three_prime_UTR 25.0%
! AAATACATACAACTTGTATG+GGG + chr5_3:5185101-5185120 Msa0793200:three_prime_UTR 25.0%
! TAGAATAATAGAGTTCTTCT+GGG + chr5_3:5185240-5185259 Msa0793200:three_prime_UTR 25.0%
! TAGTATGATATATATCAGAG+AGG - chr5_3:5185298-5185317 None:intergenic 25.0%
! TCTCTGATATATATCATACT+AGG + chr5_3:5185297-5185316 Msa0793200:three_prime_UTR 25.0%
!! AAGCGTACTTTGAAATTGAT+GGG - chr5_3:5183508-5183527 None:intergenic 30.0%
!! AAAGCGTACTTTGAAATTGA+TGG - chr5_3:5183509-5183528 None:intergenic 30.0%
! CATTTGAAAGTTTGAAGTGA+AGG - chr5_3:5183575-5183594 None:intergenic 30.0%
CTTCACTTCAAACTTTCAAA+TGG + chr5_3:5183573-5183592 Msa0793200:exon 30.0%
!!! TTTTTTGATTCTGTTGGTTC+AGG - chr5_3:5184122-5184141 None:intergenic 30.0%
AAGAAGAAAAAGAAAGGGAA+AGG + chr5_3:5184566-5184585 Msa0793200:CDS 30.0%
! GGTCAAAGTAGTAATTTTCA+TGG + chr5_3:5184695-5184714 Msa0793200:CDS 30.0%
TGTGATGAATTATACGATTC+TGG - chr5_3:5184989-5185008 None:intergenic 30.0%
! GTGATTTGTAATCATTTGGT+TGG + chr5_3:5185066-5185085 Msa0793200:exon 30.0%
! ACTACTTTGTTTGCTTTGAA+TGG + chr5_3:5185205-5185224 Msa0793200:three_prime_UTR 30.0%
! TTTGTTTGCTTTGAATGGAT+GGG + chr5_3:5185210-5185229 Msa0793200:three_prime_UTR 30.0%
GTAGAATAATAGAGTTCTTC+TGG + chr5_3:5185239-5185258 Msa0793200:three_prime_UTR 30.0%
!! AAGCGTACTTTGAAATTGAT+GGG - chr5_3:5183508-5183527 None:intergenic 30.0%
!! AAAGCGTACTTTGAAATTGA+TGG - chr5_3:5183509-5183528 None:intergenic 30.0%
! CATTTGAAAGTTTGAAGTGA+AGG - chr5_3:5183575-5183594 None:intergenic 30.0%
CTTCACTTCAAACTTTCAAA+TGG + chr5_3:5183573-5183592 Msa0793200:exon 30.0%
!!! TTTTTTGATTCTGTTGGTTC+AGG - chr5_3:5184122-5184141 None:intergenic 30.0%
AAGAAGAAAAAGAAAGGGAA+AGG + chr5_3:5184566-5184585 Msa0793200:CDS 30.0%
! GGTCAAAGTAGTAATTTTCA+TGG + chr5_3:5184695-5184714 Msa0793200:CDS 30.0%
TGTGATGAATTATACGATTC+TGG - chr5_3:5184989-5185008 None:intergenic 30.0%
! GTGATTTGTAATCATTTGGT+TGG + chr5_3:5185066-5185085 Msa0793200:exon 30.0%
! ACTACTTTGTTTGCTTTGAA+TGG + chr5_3:5185205-5185224 Msa0793200:three_prime_UTR 30.0%
! TTTGTTTGCTTTGAATGGAT+GGG + chr5_3:5185210-5185229 Msa0793200:three_prime_UTR 30.0%
GTAGAATAATAGAGTTCTTC+TGG + chr5_3:5185239-5185258 Msa0793200:three_prime_UTR 30.0%
! AGTTTGAAGTGAAGGAGAAA+AGG - chr5_3:5183567-5183586 None:intergenic 35.0%
TTCACAACATCTCAACTACA+AGG + chr5_3:5183624-5183643 Msa0793200:CDS 35.0%
AACAAGTTTAGAAGCAGTTG+AGG - chr5_3:5183725-5183744 None:intergenic 35.0%
!! TCTTTGTTCTTCTCTGGTTT+TGG - chr5_3:5184155-5184174 None:intergenic 35.0%
TGTTTCTCTTTGTTCTTCTC+TGG - chr5_3:5184161-5184180 None:intergenic 35.0%
AACAGTGAAAACAGCAACAA+CGG + chr5_3:5184227-5184246 Msa0793200:CDS 35.0%
TCCAAGAACGTTGAAGTTAA+CGG + chr5_3:5184275-5184294 Msa0793200:CDS 35.0%
AAAGTTAACAAACCCAACGA+AGG + chr5_3:5184335-5184354 Msa0793200:CDS 35.0%
GGTTCTTCATTATCATCGTT+AGG - chr5_3:5184485-5184504 None:intergenic 35.0%
CTTGAAATTGACCATTTGAC+CGG - chr5_3:5184676-5184695 None:intergenic 35.0%
TTTCATGGGCAAATACATTC+AGG + chr5_3:5184710-5184729 Msa0793200:CDS 35.0%
TGTTCGTTAATGTAATGACG+TGG - chr5_3:5184761-5184780 None:intergenic 35.0%
GATGAATACGGGAAATGAAA+TGG + chr5_3:5184934-5184953 Msa0793200:CDS 35.0%
ATCAGAGCAAAAGCTTCAAA+AGG + chr5_3:5185156-5185175 Msa0793200:three_prime_UTR 35.0%
CAAAAGCTTCAAAAGGAAGT+TGG + chr5_3:5185163-5185182 Msa0793200:three_prime_UTR 35.0%
! CTTTGTTTGCTTTGAATGGA+TGG + chr5_3:5185209-5185228 Msa0793200:three_prime_UTR 35.0%
TGATATATATCAGAGAGGCA+AGG - chr5_3:5185293-5185312 None:intergenic 35.0%
! AGTTTGAAGTGAAGGAGAAA+AGG - chr5_3:5183567-5183586 None:intergenic 35.0%
TTCACAACATCTCAACTACA+AGG + chr5_3:5183624-5183643 Msa0793200:CDS 35.0%
AACAAGTTTAGAAGCAGTTG+AGG - chr5_3:5183725-5183744 None:intergenic 35.0%
!! TCTTTGTTCTTCTCTGGTTT+TGG - chr5_3:5184155-5184174 None:intergenic 35.0%
TGTTTCTCTTTGTTCTTCTC+TGG - chr5_3:5184161-5184180 None:intergenic 35.0%
AACAGTGAAAACAGCAACAA+CGG + chr5_3:5184227-5184246 Msa0793200:CDS 35.0%
TCCAAGAACGTTGAAGTTAA+CGG + chr5_3:5184275-5184294 Msa0793200:CDS 35.0%
AAAGTTAACAAACCCAACGA+AGG + chr5_3:5184335-5184354 Msa0793200:CDS 35.0%
GGTTCTTCATTATCATCGTT+AGG - chr5_3:5184485-5184504 None:intergenic 35.0%
CTTGAAATTGACCATTTGAC+CGG - chr5_3:5184676-5184695 None:intergenic 35.0%
TTTCATGGGCAAATACATTC+AGG + chr5_3:5184710-5184729 Msa0793200:CDS 35.0%
TGTTCGTTAATGTAATGACG+TGG - chr5_3:5184761-5184780 None:intergenic 35.0%
GATGAATACGGGAAATGAAA+TGG + chr5_3:5184934-5184953 Msa0793200:CDS 35.0%
ATCAGAGCAAAAGCTTCAAA+AGG + chr5_3:5185156-5185175 Msa0793200:three_prime_UTR 35.0%
CAAAAGCTTCAAAAGGAAGT+TGG + chr5_3:5185163-5185182 Msa0793200:three_prime_UTR 35.0%
! CTTTGTTTGCTTTGAATGGA+TGG + chr5_3:5185209-5185228 Msa0793200:three_prime_UTR 35.0%
TGATATATATCAGAGAGGCA+AGG - chr5_3:5185293-5185312 None:intergenic 35.0%
! TACGGAAGAGTACGTTGTTA+GGG - chr5_3:5183694-5183713 None:intergenic 40.0%
GCAGTTGAGGAAGAATAGTA+CGG - chr5_3:5183712-5183731 None:intergenic 40.0%
CAGTTGTCTGAGAGACAAAA+TGG - chr5_3:5183753-5183772 None:intergenic 40.0%
ACAAACTGACCAACAAGACA+GGG + chr5_3:5184078-5184097 Msa0793200:CDS 40.0%
AACTTCAACGTTCTTGGATG+TGG - chr5_3:5184273-5184292 None:intergenic 40.0%
!!! CTAACTTTTTTCTCGGCTAC+CGG - chr5_3:5184446-5184465 None:intergenic 40.0%
!!! TGCGACGCTAACTTTTTTCT+CGG - chr5_3:5184453-5184472 None:intergenic 40.0%
CCATTGACGAATGAGAAAAC+CGG + chr5_3:5184503-5184522 Msa0793200:CDS 40.0%
! AATGAGAAAACCGGTTCAAC+CGG + chr5_3:5184512-5184531 Msa0793200:CDS 40.0%
CGGTCAAATGGTCAATTTCA+AGG + chr5_3:5184674-5184693 Msa0793200:CDS 40.0%
TCGTTAATGTAATGACGTGG+CGG - chr5_3:5184758-5184777 None:intergenic 40.0%
TATCCTAGCAGCAGTAGTTA+CGG + chr5_3:5184866-5184885 Msa0793200:CDS 40.0%
! ATCACATGCGCGTATTGATA+CGG - chr5_3:5184917-5184936 None:intergenic 40.0%
ATACGCGCATGTGATGAATA+CGG + chr5_3:5184922-5184941 Msa0793200:CDS 40.0%
!! GATTCTGGTTCATACGTGTA+CGG - chr5_3:5184974-5184993 None:intergenic 40.0%
CACATGACATTACACGCATT+AGG - chr5_3:5185049-5185068 None:intergenic 40.0%
ATACAACTTGTATGGGGCAT+GGG + chr5_3:5185107-5185126 Msa0793200:three_prime_UTR 40.0%
!!! TCTTTCTGGCTTTTGTTCAG+TGG + chr5_3:5185263-5185282 Msa0793200:three_prime_UTR 40.0%
! TACGGAAGAGTACGTTGTTA+GGG - chr5_3:5183694-5183713 None:intergenic 40.0%
GCAGTTGAGGAAGAATAGTA+CGG - chr5_3:5183712-5183731 None:intergenic 40.0%
CAGTTGTCTGAGAGACAAAA+TGG - chr5_3:5183753-5183772 None:intergenic 40.0%
ACAAACTGACCAACAAGACA+GGG + chr5_3:5184078-5184097 Msa0793200:CDS 40.0%
AACTTCAACGTTCTTGGATG+TGG - chr5_3:5184273-5184292 None:intergenic 40.0%
!!! CTAACTTTTTTCTCGGCTAC+CGG - chr5_3:5184446-5184465 None:intergenic 40.0%
!!! TGCGACGCTAACTTTTTTCT+CGG - chr5_3:5184453-5184472 None:intergenic 40.0%
CCATTGACGAATGAGAAAAC+CGG + chr5_3:5184503-5184522 Msa0793200:CDS 40.0%
! AATGAGAAAACCGGTTCAAC+CGG + chr5_3:5184512-5184531 Msa0793200:CDS 40.0%
CGGTCAAATGGTCAATTTCA+AGG + chr5_3:5184674-5184693 Msa0793200:CDS 40.0%
TCGTTAATGTAATGACGTGG+CGG - chr5_3:5184758-5184777 None:intergenic 40.0%
TATCCTAGCAGCAGTAGTTA+CGG + chr5_3:5184866-5184885 Msa0793200:CDS 40.0%
! ATCACATGCGCGTATTGATA+CGG - chr5_3:5184917-5184936 None:intergenic 40.0%
ATACGCGCATGTGATGAATA+CGG + chr5_3:5184922-5184941 Msa0793200:CDS 40.0%
!! GATTCTGGTTCATACGTGTA+CGG - chr5_3:5184974-5184993 None:intergenic 40.0%
CACATGACATTACACGCATT+AGG - chr5_3:5185049-5185068 None:intergenic 40.0%
ATACAACTTGTATGGGGCAT+GGG + chr5_3:5185107-5185126 Msa0793200:three_prime_UTR 40.0%
!!! TCTTTCTGGCTTTTGTTCAG+TGG + chr5_3:5185263-5185282 Msa0793200:three_prime_UTR 40.0%
TTCAGCTTGTGTCTCTGATG+CGG - chr5_3:5183599-5183618 None:intergenic 45.0%
! GTACGGAAGAGTACGTTGTT+AGG - chr5_3:5183695-5183714 None:intergenic 45.0%
! CTGTCTTGTTGGTCAGTTTG+TGG - chr5_3:5184079-5184098 None:intergenic 45.0%
CACAAACTGACCAACAAGAC+AGG + chr5_3:5184077-5184096 Msa0793200:CDS 45.0%
AACATGCTTCCCTGTCTTGT+TGG - chr5_3:5184090-5184109 None:intergenic 45.0%
GAAAACAGCAACAACGGAAC+AGG + chr5_3:5184233-5184252 Msa0793200:CDS 45.0%
GCCGTTAACTTCAACGTTCT+TGG - chr5_3:5184279-5184298 None:intergenic 45.0%
TGTTCAAGAGCTAAAGCCAG+AGG + chr5_3:5184388-5184407 Msa0793200:CDS 45.0%
ACTGTTTGCTTTCTCACCTC+TGG - chr5_3:5184407-5184426 None:intergenic 45.0%
AGAGGTGAGAAAGCAAACAG+TGG + chr5_3:5184406-5184425 Msa0793200:CDS 45.0%
!!! TTTTTTCTCGGCTACCGGTT+TGG - chr5_3:5184441-5184460 None:intergenic 45.0%
! CCGGTTTTCTCATTCGTCAA+TGG - chr5_3:5184506-5184525 None:intergenic 45.0%
GCAGCAAAATGAGATTGAGG+AGG - chr5_3:5184809-5184828 None:intergenic 45.0%
GCAGCAGCAAAATGAGATTG+AGG - chr5_3:5184812-5184831 None:intergenic 45.0%
ATACGCTGTATGATGGCTCA+CGG - chr5_3:5184849-5184868 None:intergenic 45.0%
TGCTAGGATACGCTGTATGA+TGG - chr5_3:5184856-5184875 None:intergenic 45.0%
TACGCGCATGTGATGAATAC+GGG + chr5_3:5184923-5184942 Msa0793200:CDS 45.0%
CATACAACTTGTATGGGGCA+TGG + chr5_3:5185106-5185125 Msa0793200:three_prime_UTR 45.0%
TACAACTTGTATGGGGCATG+GGG + chr5_3:5185108-5185127 Msa0793200:three_prime_UTR 45.0%
! GCTTTGAATGGATGGGAAGT+TGG + chr5_3:5185217-5185236 Msa0793200:three_prime_UTR 45.0%
AGAGTTCTTCTGGGTCTTTC+TGG + chr5_3:5185249-5185268 Msa0793200:three_prime_UTR 45.0%
TTCAGCTTGTGTCTCTGATG+CGG - chr5_3:5183599-5183618 None:intergenic 45.0%
! GTACGGAAGAGTACGTTGTT+AGG - chr5_3:5183695-5183714 None:intergenic 45.0%
! CTGTCTTGTTGGTCAGTTTG+TGG - chr5_3:5184079-5184098 None:intergenic 45.0%
CACAAACTGACCAACAAGAC+AGG + chr5_3:5184077-5184096 Msa0793200:CDS 45.0%
AACATGCTTCCCTGTCTTGT+TGG - chr5_3:5184090-5184109 None:intergenic 45.0%
GAAAACAGCAACAACGGAAC+AGG + chr5_3:5184233-5184252 Msa0793200:CDS 45.0%
GCCGTTAACTTCAACGTTCT+TGG - chr5_3:5184279-5184298 None:intergenic 45.0%
TGTTCAAGAGCTAAAGCCAG+AGG + chr5_3:5184388-5184407 Msa0793200:CDS 45.0%
ACTGTTTGCTTTCTCACCTC+TGG - chr5_3:5184407-5184426 None:intergenic 45.0%
AGAGGTGAGAAAGCAAACAG+TGG + chr5_3:5184406-5184425 Msa0793200:CDS 45.0%
!!! TTTTTTCTCGGCTACCGGTT+TGG - chr5_3:5184441-5184460 None:intergenic 45.0%
! CCGGTTTTCTCATTCGTCAA+TGG - chr5_3:5184506-5184525 None:intergenic 45.0%
GCAGCAAAATGAGATTGAGG+AGG - chr5_3:5184809-5184828 None:intergenic 45.0%
GCAGCAGCAAAATGAGATTG+AGG - chr5_3:5184812-5184831 None:intergenic 45.0%
ATACGCTGTATGATGGCTCA+CGG - chr5_3:5184849-5184868 None:intergenic 45.0%
TGCTAGGATACGCTGTATGA+TGG - chr5_3:5184856-5184875 None:intergenic 45.0%
TACGCGCATGTGATGAATAC+GGG + chr5_3:5184923-5184942 Msa0793200:CDS 45.0%
CATACAACTTGTATGGGGCA+TGG + chr5_3:5185106-5185125 Msa0793200:three_prime_UTR 45.0%
TACAACTTGTATGGGGCATG+GGG + chr5_3:5185108-5185127 Msa0793200:three_prime_UTR 45.0%
! GCTTTGAATGGATGGGAAGT+TGG + chr5_3:5185217-5185236 Msa0793200:three_prime_UTR 45.0%
AGAGTTCTTCTGGGTCTTTC+TGG + chr5_3:5185249-5185268 Msa0793200:three_prime_UTR 45.0%
AAAGTCTCCATTCACTGCGC+AGG + chr5_3:5183778-5183797 Msa0793200:CDS 50.0%
! CAGGGAAGCATGTTGAGCTT+TGG + chr5_3:5184096-5184115 Msa0793200:CDS 50.0%
AACGGCAACACCGCTAAAAG+CGG + chr5_3:5184293-5184312 Msa0793200:CDS 50.0%
AACACCGCTAAAAGCGGCAA+CGG + chr5_3:5184299-5184318 Msa0793200:CDS 50.0%
CTCTTGAACATGTACCACGC+CGG - chr5_3:5184378-5184397 None:intergenic 50.0%
!! AGTGGTGTTACCAGCCAAAC+CGG + chr5_3:5184424-5184443 Msa0793200:CDS 50.0%
! ACCAGTGTTACCGGTTGAAC+CGG - chr5_3:5184525-5184544 None:intergenic 50.0%
GCTATCACCACCAGTGTTAC+CGG - chr5_3:5184534-5184553 None:intergenic 50.0%
! AACACTGGTGGTGATAGCAG+TGG + chr5_3:5184536-5184555 Msa0793200:CDS 50.0%
TGAACACTTCCGTGATGCAC+CGG + chr5_3:5184631-5184650 Msa0793200:CDS 50.0%
TTACCTGAACCACCAGTACC+CGG - chr5_3:5184653-5184672 None:intergenic 50.0%
! GTACTGGTGGTTCAGGTAAC+CGG + chr5_3:5184654-5184673 Msa0793200:CDS 50.0%
GGTTCAGGTAACCGGTCAAA+TGG + chr5_3:5184662-5184681 Msa0793200:CDS 50.0%
! GTGGCGGTACTTCATTGGTT+AGG - chr5_3:5184742-5184761 None:intergenic 50.0%
ATGACGTGGCGGTACTTCAT+TGG - chr5_3:5184747-5184766 None:intergenic 50.0%
TTTCACCCACCGCAGTACTA+TGG + chr5_3:5184782-5184801 Msa0793200:CDS 50.0%
TGAGGAGGACCATAGTACTG+CGG - chr5_3:5184794-5184813 None:intergenic 50.0%
! TCATTTTGCTGCTGCTCCAC+CGG + chr5_3:5184817-5184836 Msa0793200:CDS 50.0%
TGATGGCTCACGGTAACAAC+CGG - chr5_3:5184839-5184858 None:intergenic 50.0%
! GCGTATTGATACGGTTGTGG+AGG - chr5_3:5184908-5184927 None:intergenic 50.0%
! TGCGCGTATTGATACGGTTG+TGG - chr5_3:5184911-5184930 None:intergenic 50.0%
ATGAAATGGAGCCTCAGCCA+AGG + chr5_3:5184948-5184967 Msa0793200:CDS 50.0%
ACAACTTGTATGGGGCATGG+GGG + chr5_3:5185109-5185128 Msa0793200:three_prime_UTR 50.0%
AAAGTCTCCATTCACTGCGC+AGG + chr5_3:5183778-5183797 Msa0793200:CDS 50.0%
! CAGGGAAGCATGTTGAGCTT+TGG + chr5_3:5184096-5184115 Msa0793200:CDS 50.0%
AACGGCAACACCGCTAAAAG+CGG + chr5_3:5184293-5184312 Msa0793200:CDS 50.0%
AACACCGCTAAAAGCGGCAA+CGG + chr5_3:5184299-5184318 Msa0793200:CDS 50.0%
CTCTTGAACATGTACCACGC+CGG - chr5_3:5184378-5184397 None:intergenic 50.0%
!! AGTGGTGTTACCAGCCAAAC+CGG + chr5_3:5184424-5184443 Msa0793200:CDS 50.0%
! ACCAGTGTTACCGGTTGAAC+CGG - chr5_3:5184525-5184544 None:intergenic 50.0%
GCTATCACCACCAGTGTTAC+CGG - chr5_3:5184534-5184553 None:intergenic 50.0%
! AACACTGGTGGTGATAGCAG+TGG + chr5_3:5184536-5184555 Msa0793200:CDS 50.0%
TGAACACTTCCGTGATGCAC+CGG + chr5_3:5184631-5184650 Msa0793200:CDS 50.0%
TTACCTGAACCACCAGTACC+CGG - chr5_3:5184653-5184672 None:intergenic 50.0%
! GTACTGGTGGTTCAGGTAAC+CGG + chr5_3:5184654-5184673 Msa0793200:CDS 50.0%
GGTTCAGGTAACCGGTCAAA+TGG + chr5_3:5184662-5184681 Msa0793200:CDS 50.0%
! GTGGCGGTACTTCATTGGTT+AGG - chr5_3:5184742-5184761 None:intergenic 50.0%
ATGACGTGGCGGTACTTCAT+TGG - chr5_3:5184747-5184766 None:intergenic 50.0%
TTTCACCCACCGCAGTACTA+TGG + chr5_3:5184782-5184801 Msa0793200:CDS 50.0%
TGAGGAGGACCATAGTACTG+CGG - chr5_3:5184794-5184813 None:intergenic 50.0%
! TCATTTTGCTGCTGCTCCAC+CGG + chr5_3:5184817-5184836 Msa0793200:CDS 50.0%
TGATGGCTCACGGTAACAAC+CGG - chr5_3:5184839-5184858 None:intergenic 50.0%
! GCGTATTGATACGGTTGTGG+AGG - chr5_3:5184908-5184927 None:intergenic 50.0%
! TGCGCGTATTGATACGGTTG+TGG - chr5_3:5184911-5184930 None:intergenic 50.0%
ATGAAATGGAGCCTCAGCCA+AGG + chr5_3:5184948-5184967 Msa0793200:CDS 50.0%
ACAACTTGTATGGGGCATGG+GGG + chr5_3:5185109-5185128 Msa0793200:three_prime_UTR 50.0%
!!! GCTTCCGTTGCCGCTTTTAG+CGG - chr5_3:5184306-5184325 None:intergenic 55.0%
GCTAAAAGCGGCAACGGAAG+CGG + chr5_3:5184305-5184324 Msa0793200:CDS 55.0%
CCGGTTGTGGAACCTTCGTT+GGG - chr5_3:5184350-5184369 None:intergenic 55.0%
CCCAACGAAGGTTCCACAAC+CGG + chr5_3:5184347-5184366 Msa0793200:CDS 55.0%
CCAACGAAGGTTCCACAACC+GGG + chr5_3:5184348-5184367 Msa0793200:CDS 55.0%
GGTTCCACAACCGGGAAAAC+CGG + chr5_3:5184356-5184375 Msa0793200:CDS 55.0%
!!! ATGTACCACGCCGGTTTTCC+CGG - chr5_3:5184369-5184388 None:intergenic 55.0%
! ACCGGTTCAACCGGTAACAC+TGG + chr5_3:5184521-5184540 Msa0793200:CDS 55.0%
GGTTCAACCGGTAACACTGG+TGG + chr5_3:5184524-5184543 Msa0793200:CDS 55.0%
GAACACTTCCGTGATGCACC+GGG + chr5_3:5184632-5184651 Msa0793200:CDS 55.0%
GAGGACCATAGTACTGCGGT+GGG - chr5_3:5184790-5184809 None:intergenic 55.0%
GCACCGTAACTACTGCTGCT+AGG - chr5_3:5184872-5184891 None:intergenic 55.0%
GGTTCATACGTGTACGGCCT+TGG - chr5_3:5184968-5184987 None:intergenic 55.0%
!!! GCTTCCGTTGCCGCTTTTAG+CGG - chr5_3:5184306-5184325 None:intergenic 55.0%
GCTAAAAGCGGCAACGGAAG+CGG + chr5_3:5184305-5184324 Msa0793200:CDS 55.0%
CCGGTTGTGGAACCTTCGTT+GGG - chr5_3:5184350-5184369 None:intergenic 55.0%
CCCAACGAAGGTTCCACAAC+CGG + chr5_3:5184347-5184366 Msa0793200:CDS 55.0%
CCAACGAAGGTTCCACAACC+GGG + chr5_3:5184348-5184367 Msa0793200:CDS 55.0%
GGTTCCACAACCGGGAAAAC+CGG + chr5_3:5184356-5184375 Msa0793200:CDS 55.0%
!!! ATGTACCACGCCGGTTTTCC+CGG - chr5_3:5184369-5184388 None:intergenic 55.0%
! ACCGGTTCAACCGGTAACAC+TGG + chr5_3:5184521-5184540 Msa0793200:CDS 55.0%
GGTTCAACCGGTAACACTGG+TGG + chr5_3:5184524-5184543 Msa0793200:CDS 55.0%
GAACACTTCCGTGATGCACC+GGG + chr5_3:5184632-5184651 Msa0793200:CDS 55.0%
GAGGACCATAGTACTGCGGT+GGG - chr5_3:5184790-5184809 None:intergenic 55.0%
GCACCGTAACTACTGCTGCT+AGG - chr5_3:5184872-5184891 None:intergenic 55.0%
GGTTCATACGTGTACGGCCT+TGG - chr5_3:5184968-5184987 None:intergenic 55.0%
CTTGCAGCCTGCGCAGTGAA+TGG - chr5_3:5183788-5183807 None:intergenic 60.0%
CCCGGTTGTGGAACCTTCGT+TGG - chr5_3:5184351-5184370 None:intergenic 60.0%
!! TTCTCGGCTACCGGTTTGGC+TGG - chr5_3:5184437-5184456 None:intergenic 60.0%
TTCCGTGATGCACCGGGTAC+TGG + chr5_3:5184638-5184657 Msa0793200:CDS 60.0%
CACCAGTACCCGGTGCATCA+CGG - chr5_3:5184643-5184662 None:intergenic 60.0%
GGAGGACCATAGTACTGCGG+TGG - chr5_3:5184791-5184810 None:intergenic 60.0%
TGGCTCACGGTAACAACCGG+TGG - chr5_3:5184836-5184855 None:intergenic 60.0%
TACGTGTACGGCCTTGGCTG+AGG - chr5_3:5184962-5184981 None:intergenic 60.0%
CTTGCAGCCTGCGCAGTGAA+TGG - chr5_3:5183788-5183807 None:intergenic 60.0%
CCCGGTTGTGGAACCTTCGT+TGG - chr5_3:5184351-5184370 None:intergenic 60.0%
!! TTCTCGGCTACCGGTTTGGC+TGG - chr5_3:5184437-5184456 None:intergenic 60.0%
TTCCGTGATGCACCGGGTAC+TGG + chr5_3:5184638-5184657 Msa0793200:CDS 60.0%
CACCAGTACCCGGTGCATCA+CGG - chr5_3:5184643-5184662 None:intergenic 60.0%
GGAGGACCATAGTACTGCGG+TGG - chr5_3:5184791-5184810 None:intergenic 60.0%
TGGCTCACGGTAACAACCGG+TGG - chr5_3:5184836-5184855 None:intergenic 60.0%
TACGTGTACGGCCTTGGCTG+AGG - chr5_3:5184962-5184981 None:intergenic 60.0%
!!! CACGCCGGTTTTCCCGGTTG+TGG - chr5_3:5184363-5184382 None:intergenic 65.0%
CACAACCGGGAAAACCGGCG+TGG + chr5_3:5184361-5184380 Msa0793200:CDS 65.0%
!! CGTGATGCACCGGGTACTGG+TGG + chr5_3:5184641-5184660 Msa0793200:CDS 65.0%
!! GCACCGGGTACTGGTGGTTC+AGG + chr5_3:5184647-5184666 Msa0793200:CDS 65.0%
!!! CACGCCGGTTTTCCCGGTTG+TGG - chr5_3:5184363-5184382 None:intergenic 65.0%
CACAACCGGGAAAACCGGCG+TGG + chr5_3:5184361-5184380 Msa0793200:CDS 65.0%
!! CGTGATGCACCGGGTACTGG+TGG + chr5_3:5184641-5184660 Msa0793200:CDS 65.0%
!! GCACCGGGTACTGGTGGTTC+AGG + chr5_3:5184647-5184666 Msa0793200:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 5183480 5185343 5183480 ID=Msa0793200;Name=Msa0793200
chr5_3 mRNA 5183480 5185343 5183480 ID=Msa0793200-mRNA-1;Parent=Msa0793200;Name=Msa0793200-mRNA-1;_AED=0.04;_eAED=0.04;_QI=112|1|1|1|1|1|3|274|399
chr5_3 exon 5183480 5183645 5183480 ID=Msa0793200-mRNA-1:exon:1929;Parent=Msa0793200-mRNA-1
chr5_3 exon 5183766 5183841 5183766 ID=Msa0793200-mRNA-1:exon:1930;Parent=Msa0793200-mRNA-1
chr5_3 exon 5184000 5185343 5184000 ID=Msa0793200-mRNA-1:exon:1931;Parent=Msa0793200-mRNA-1
chr5_3 five_prime_UTR 5183480 5183591 5183480 ID=Msa0793200-mRNA-1:five_prime_utr;Parent=Msa0793200-mRNA-1
chr5_3 CDS 5183592 5183645 5183592 ID=Msa0793200-mRNA-1:cds;Parent=Msa0793200-mRNA-1
chr5_3 CDS 5183766 5183841 5183766 ID=Msa0793200-mRNA-1:cds;Parent=Msa0793200-mRNA-1
chr5_3 CDS 5184000 5185069 5184000 ID=Msa0793200-mRNA-1:cds;Parent=Msa0793200-mRNA-1
chr5_3 three_prime_UTR 5185070 5185343 5185070 ID=Msa0793200-mRNA-1:three_prime_utr;Parent=Msa0793200-mRNA-1
Gene Sequence

>Msa0793200

ATGGCCGCATCAGAGACACAAGCTGAACAACATTCACAACATCTCAACTACAAGACAACTGTTTTGAAAGTCTCCATTCACTGCGCAGGCTGCAAGAGAAAAGTACACAAAATTCTTCAAAACATACAAGGTGTTCAAAACATAGACATTGATTTGAAGCAACAAAAAGTAATAGTAACGGGGAACGTGAACAGTGATATATTGATCCACAAACTGACCAACAAGACAGGGAAGCATGTTGAGCTTTGGCCTGAACCAACAGAATCAAAAAAGAAGAAGCAACCAAAACCAGAGAAGAACAAAGAGAAACAGAGCGACTCAGAAACTGAAAACAGTGAAGAAATAGAAATCAAACAAAACAGTGAAAACAGCAACAACGGAACAGGTAAAGTTGACACATCCACATCCAAGAACGTTGAAGTTAACGGCAACACCGCTAAAAGCGGCAACGGAAGCGGTGACAGTAAAGTTAACAAACCCAACGAAGGTTCCACAACCGGGAAAACCGGCGTGGTACATGTTCAAGAGCTAAAGCCAGAGGTGAGAAAGCAAACAGTGGTGTTACCAGCCAAACCGGTAGCCGAGAAAAAAGTTAGCGTCGCAGTTCAATTTCCTAACGATGATAATGAAGAACCATTGACGAATGAGAAAACCGGTTCAACCGGTAACACTGGTGGTGATAGCAGTGGATTGAAAAAGAAGAAAAAGAAAGGGAAAGGTAAAGTTGTTAACAACAATGTTGAAGAAAGTGTTGTTAATGTTGAACACTTCCGTGATGCACCGGGTACTGGTGGTTCAGGTAACCGGTCAAATGGTCAATTTCAAGGTCAAAGTAGTAATTTTCATGGGCAAATACATTCAGGTTCAAACCTAACCAATGAAGTACCGCCACGTCATTACATTAACGAACAATTTCACCCACCGCAGTACTATGGTCCTCCTCAATCTCATTTTGCTGCTGCTCCACCGGTTGTTACCGTGAGCCATCATACAGCGTATCCTAGCAGCAGTAGTTACGGTGCAGCGTATTATGCGCCTCCACAACCGTATCAATACGCGCATGTGATGAATACGGGAAATGAAATGGAGCCTCAGCCAAGGCCGTACACGTATGAACCAGAATCGTATAATTCATCACAACCGTCAGATTCTTTTGTTTATTTTAGTGATGAAAATCCTAATGCGTGTAATGTCATGTGA
Protein sequence

>Msa0793200

MAASETQAEQHSQHLNYKTTVLKVSIHCAGCKRKVHKILQNIQGVQNIDIDLKQQKVIVTGNVNSDILIHKLTNKTGKHVELWPEPTESKKKKQPKPEKNKEKQSDSETENSEEIEIKQNSENSNNGTGKVDTSTSKNVEVNGNTAKSGNGSGDSKVNKPNEGSTTGKTGVVHVQELKPEVRKQTVVLPAKPVAEKKVSVAVQFPNDDNEEPLTNEKTGSTGNTGGDSSGLKKKKKKGKGKVVNNNVEESVVNVEHFRDAPGTGGSGNRSNGQFQGQSSNFHGQIHSGSNLTNEVPPRHYINEQFHPPQYYGPPQSHFAAAPPVVTVSHHTAYPSSSSYGAAYYAPPQPYQYAHVMNTGNEMEPQPRPYTYEPESYNSSQPSDSFVYFSDENPNACNVM*