AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1333900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1333900 MtrunA17_Chr4g0072871 97.074 376 10 1 1 376 1 375 0.0 753
Msa1333900 MtrunA17_Chr1g0150471 47.075 359 140 8 20 375 4 315 2.04e-99 297
Msa1333900 MtrunA17_Chr3g0136701 49.444 360 104 11 20 375 4 289 3.53e-89 270
Msa1333900 MtrunA17_Chr7g0220721 64.835 91 32 0 20 110 24 114 4.84e-39 143
Msa1333900 MtrunA17_Chr1g0155811 45.161 93 41 1 22 104 5 97 1.88e-20 90.1
Msa1333900 MtrunA17_Chr5g0429341 43.333 90 51 0 21 110 4 93 9.57e-19 87.0
Msa1333900 MtrunA17_Chr7g0268691 28.049 164 99 3 22 185 20 164 8.73e-17 80.9
Msa1333900 MtrunA17_Chr7g0268691 41.176 68 40 0 273 340 302 369 7.94e-11 63.2
Msa1333900 MtrunA17_Chr4g0033641 39.130 92 47 1 22 104 5 96 1.23e-16 78.6
Msa1333900 MtrunA17_Chr3g0145061 32.331 133 73 2 22 137 5 137 1.70e-16 77.8
Msa1333900 MtrunA17_Chr4g0035651 40.860 93 45 1 22 104 5 97 3.28e-16 77.0
Msa1333900 MtrunA17_Chr5g0405151 43.210 81 38 1 21 93 4 84 3.49e-16 76.3
Msa1333900 MtrunA17_Chr3g0120711 38.889 90 54 1 21 110 4 92 4.88e-15 75.9
Msa1333900 MtrunA17_Chr3g0120711 35.714 112 72 0 232 343 287 398 8.54e-11 63.2
Msa1333900 MtrunA17_Chr2g0329511 36.957 92 49 1 22 104 5 96 5.43e-15 73.9
Msa1333900 MtrunA17_Chr2g0314671 38.043 92 48 1 22 104 5 96 2.01e-14 73.2
Msa1333900 MtrunA17_Chr3g0142221 36.170 94 49 1 22 104 5 98 7.94e-14 70.1
Msa1333900 MtrunA17_Chr8g0390971 32.778 180 110 4 168 342 228 401 9.95e-14 72.0
Msa1333900 MtrunA17_Chr2g0322941 39.024 82 50 0 21 102 43 124 6.18e-13 68.2
Msa1333900 MtrunA17_Chr7g0251781 40.541 74 44 0 22 95 5 78 7.19e-12 66.2
Msa1333900 MtrunA17_Chr5g0431351 53.226 62 26 1 283 341 155 216 1.21e-11 63.9
Msa1333900 MtrunA17_Chr1g0209861 48.052 77 29 2 265 341 359 424 1.61e-11 65.5
Msa1333900 MtrunA17_Chr2g0327621 43.548 62 32 1 287 345 140 201 2.80e-11 63.2
Msa1333900 MtrunA17_Chr2g0322951 59.184 49 20 0 295 343 88 136 4.81e-11 60.5
Msa1333900 MtrunA17_Chr1g0209071 34.146 82 54 0 20 101 3 84 5.50e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1333900 AT5G57660.1 53.125 384 143 10 1 376 1 355 9.57e-117 343
Msa1333900 AT5G24930.1 48.964 386 141 12 20 376 4 362 5.89e-97 293
Msa1333900 AT2G24790.1 50.915 328 97 13 20 343 6 273 1.51e-91 277
Msa1333900 AT3G02380.1 39.674 368 177 11 20 376 14 347 1.05e-78 246
Msa1333900 AT5G15850.1 39.683 378 186 8 13 376 6 355 2.83e-76 240
Msa1333900 AT5G15840.1 38.032 376 208 12 13 376 11 373 1.21e-75 239
Msa1333900 AT2G24790.2 48.276 232 78 10 20 248 6 198 4.87e-56 183
Msa1333900 AT5G15840.2 34.211 228 139 6 13 229 11 238 3.36e-39 141
Msa1333900 AT3G21880.3 27.577 359 216 11 16 340 4 352 1.93e-24 103
Msa1333900 AT3G21880.2 27.577 359 216 11 16 340 4 352 1.93e-24 103
Msa1333900 AT3G21880.1 27.195 353 214 10 22 340 5 348 3.91e-24 102
Msa1333900 AT1G49130.2 25.439 342 192 10 19 342 18 314 6.95e-20 89.7
Msa1333900 AT1G49130.1 25.439 342 192 10 19 342 25 321 7.82e-20 89.7
Msa1333900 AT2G33500.1 44.944 89 49 0 22 110 12 100 4.13e-18 85.5
Msa1333900 AT2G33500.2 44.944 89 49 0 22 110 12 100 4.22e-18 85.5
Msa1333900 AT1G28050.1 43.820 89 50 0 22 110 9 97 3.83e-17 82.8
Msa1333900 AT1G75540.1 36.434 129 68 2 22 136 5 133 1.62e-16 80.1
Msa1333900 AT2G21320.1 40.449 89 45 1 21 101 4 92 1.78e-16 77.0
Msa1333900 AT2G47890.2 38.462 91 54 1 20 110 11 99 5.44e-16 77.0
Msa1333900 AT4G38960.1 43.210 81 38 1 21 93 4 84 5.80e-16 75.9
Msa1333900 AT4G38960.6 43.210 81 38 1 21 93 4 84 5.80e-16 75.9
Msa1333900 AT1G06040.1 40.217 92 46 1 22 104 5 96 6.18e-16 77.0
Msa1333900 AT2G47890.3 38.462 91 54 1 20 110 11 99 7.19e-16 77.8
Msa1333900 AT2G47890.1 38.462 91 54 1 20 110 11 99 7.69e-16 78.2
Msa1333900 AT1G06040.2 40.217 92 46 1 22 104 5 96 9.86e-16 75.1
Msa1333900 AT4G15250.1 33.544 158 90 5 22 175 5 151 1.70e-15 77.0
Msa1333900 AT5G48250.1 46.575 73 39 0 21 93 4 76 1.97e-15 77.4
Msa1333900 AT3G07650.3 45.205 73 40 0 21 93 4 76 3.44e-15 76.6
Msa1333900 AT3G07650.2 45.205 73 40 0 21 93 4 76 3.44e-15 76.6
Msa1333900 AT3G07650.4 45.205 73 40 0 21 93 4 76 3.44e-15 76.6
Msa1333900 AT3G07650.1 45.205 73 40 0 21 93 4 76 3.44e-15 76.6
Msa1333900 AT2G31380.1 36.036 111 57 2 22 123 5 110 6.30e-15 73.9
Msa1333900 AT1G78600.1 38.043 92 48 1 22 104 5 96 1.91e-14 73.6
Msa1333900 AT1G78600.2 38.043 92 48 1 22 104 5 96 2.42e-14 73.6
Msa1333900 AT1G73870.1 52.000 75 31 2 272 344 319 390 1.46e-13 72.0
Msa1333900 AT1G68190.2 36.585 82 52 0 20 101 41 122 2.89e-12 67.8
Msa1333900 AT1G68190.1 36.585 82 52 0 20 101 12 93 2.92e-12 67.8
Msa1333900 AT1G68190.3 36.585 82 52 0 20 101 12 93 2.92e-12 67.8
Msa1333900 AT4G39070.1 32.500 120 71 1 22 131 5 124 9.85e-12 64.7
Msa1333900 AT1G68520.1 67.391 46 15 0 299 344 357 402 1.69e-11 65.9
Msa1333900 AT4G10240.1 28.767 146 82 3 22 149 5 146 3.39e-11 61.6
Msa1333900 AT1G25440.1 69.767 43 13 0 299 341 361 403 6.00e-11 63.9

Find 129 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCGGAATCGATGGTTTC+AGG 0.197771 8_4:+54173071 Msa1333900:CDS
GCGAACCGGCCTTTAATTCT+AGG 0.209256 8_4:-54173251 None:intergenic
TCAGAGATATCATACAATTT+TGG 0.229801 8_4:+54173050 Msa1333900:CDS
GGTGAGTTTGATGATTTCTT+AGG 0.235558 8_4:-54172035 None:intergenic
TTGAGTTTGGATCCGAAATT+AGG 0.238048 8_4:-54172642 None:intergenic
AGTGGTGAATTTGTTAGATT+TGG 0.277983 8_4:+54173677 Msa1333900:three_prime_UTR
ATCTTGAGTTTCATTGAGTT+TGG 0.285458 8_4:-54172655 None:intergenic
TTAAAGAAAGGAGAACTTTA+CGG 0.307730 8_4:+54173808 Msa1333900:three_prime_UTR
GTCCACATCCGAGTCAATTT+CGG 0.307960 8_4:-54173282 None:intergenic
GGAGAACTTTACGGGACTTT+TGG 0.316406 8_4:+54173817 Msa1333900:three_prime_UTR
GGAATGTGATGGATAGTTAA+AGG 0.317309 8_4:-54172883 None:intergenic
TGCTGCAGTTAATATTGTTC+TGG 0.321062 8_4:-54172746 None:intergenic
ATTACTTACGCTATGGCTAA+TGG 0.327776 8_4:-54172904 None:intergenic
AGAGATGTTCTTCTCTGATA+TGG 0.330404 8_4:+54172689 Msa1333900:CDS
GAAACCCGGCCTAGAATTAA+AGG 0.334745 8_4:+54173242 Msa1333900:CDS
TTTGGTTGATAGTATTAATC+TGG 0.339570 8_4:+54173835 Msa1333900:three_prime_UTR
CTTCCCGCCACGAGCGCGTC+TGG 0.340581 8_4:+54172343 Msa1333900:CDS
TGCTGCAGCAGCGGCGGTGG+AGG 0.348757 8_4:-54172535 None:intergenic
ATCTGCATCCCCATTCCTAT+TGG 0.368200 8_4:+54173970 Msa1333900:three_prime_UTR
CGCTTCTTAGCTTATTTGAA+TGG 0.369817 8_4:-54172095 None:intergenic
TAAAGAAAGGAGAACTTTAC+GGG 0.370392 8_4:+54173809 Msa1333900:three_prime_UTR
CTGATTCCGAATCCTAATTT+CGG 0.371287 8_4:+54172630 Msa1333900:CDS
TTGGCGCGGTTGTACGGTAT+GGG 0.377403 8_4:+54173696 Msa1333900:three_prime_UTR
ACTTGAATTGAAGATTTGTC+TGG 0.402334 8_4:+54173754 Msa1333900:three_prime_UTR
TTTCGGTTCGTTTAGCGAAC+CGG 0.407227 8_4:-54173265 None:intergenic
GGAGTAGGTTTAGTTTGAAC+AGG 0.409524 8_4:-54172792 None:intergenic
GGCTGCTGCAGCAGCGGCGG+TGG 0.410930 8_4:-54172538 None:intergenic
CGCGGCTGCTGCAGCAGCGG+CGG 0.413463 8_4:-54172541 None:intergenic
GAGTTTGTTAGCAGAGTGAA+TGG 0.415127 8_4:-54172319 None:intergenic
AGGAACAACGCTATCGTTCA+TGG 0.416132 8_4:-54172772 None:intergenic
GTTCCTACTGACGACGGTTA+CGG 0.428387 8_4:+54172579 Msa1333900:CDS
GATCGGAATCGATGGTTTCA+GGG 0.428883 8_4:+54173072 Msa1333900:CDS
AGTTCCTTCATCTATGCTAA+TGG 0.433285 8_4:+54173334 Msa1333900:CDS
TCAGTCGATTTCTTACCAAC+TGG 0.434072 8_4:+54173608 Msa1333900:three_prime_UTR
TCTGACACCGTGTTTGCATC+TGG 0.435148 8_4:-54173032 None:intergenic
TTTGGCGCGGTTGTACGGTA+TGG 0.437776 8_4:+54173695 Msa1333900:three_prime_UTR
GCATCCCCATTCCTATTGGA+TGG 0.441138 8_4:+54173974 Msa1333900:three_prime_UTR
TAGCATAACATAACATAAGA+TGG 0.443681 8_4:+54172158 Msa1333900:exon
CATCCCCATTCCTATTGGAT+GGG 0.443832 8_4:+54173975 Msa1333900:three_prime_UTR
ACACATTGAAACCATGGTAT+AGG 0.446939 8_4:-54173424 None:intergenic
TTAGATTTGGCGCGGTTGTA+CGG 0.448042 8_4:+54173690 Msa1333900:three_prime_UTR
TTGCTCCTTGCACCACCCCT+TGG 0.448969 8_4:-54173109 None:intergenic
GAGTAATCAAAATCAAGAAA+TGG 0.454052 8_4:-54172714 None:intergenic
TTGGATCCGAAATTAGGATT+CGG 0.457793 8_4:-54172636 None:intergenic
GCACCCCATCCAATAGGAAT+GGG 0.458086 8_4:-54173979 None:intergenic
GTGAGTTTGATGATTTCTTA+GGG 0.461552 8_4:-54172034 None:intergenic
TGTCTCTGATCTTGATCTGA+GGG 0.465071 8_4:-54173543 None:intergenic
TGGCGCGGTTGTACGGTATG+GGG 0.469487 8_4:+54173697 Msa1333900:three_prime_UTR
GCTTTGCACGTGACGGAAGC+TGG 0.472622 8_4:-54172390 None:intergenic
AAAGTGGGAACGACGCCGTA+TGG 0.475583 8_4:-54173362 None:intergenic
GGAGTGGCACCCCATCCAAT+AGG 0.476032 8_4:-54173985 None:intergenic
TACAGATACAGCTGGAGAAA+AGG 0.476181 8_4:-54174006 None:intergenic
GCTTCTTAGCTTATTTGAAT+GGG 0.479060 8_4:-54172094 None:intergenic
AACCGAAATTGACTCGGATG+TGG 0.481901 8_4:+54173280 Msa1333900:CDS
AGACGCGGCTGCTGCAGCAG+CGG 0.489035 8_4:-54172544 None:intergenic
CCGGCCTTTAATTCTAGGCC+GGG 0.498099 8_4:-54173246 None:intergenic
ATTATTATTAGGATGAAAAG+TGG 0.498800 8_4:+54173659 Msa1333900:three_prime_UTR
ACCGGCCTTTAATTCTAGGC+CGG 0.502804 8_4:-54173247 None:intergenic
GGAACTGCGAGAGGATCAGC+AGG 0.506955 8_4:-54173317 None:intergenic
TGTTTGAATGAATTTGAGTT+GGG 0.508113 8_4:-54172056 None:intergenic
TTGTCTCTGATCTTGATCTG+AGG 0.511866 8_4:-54173544 None:intergenic
AGCAACACAATTATGTGGAA+TGG 0.513777 8_4:+54173127 Msa1333900:CDS
GAGTCAAAGAAAGGCTCGAC+GGG 0.517190 8_4:-54172492 None:intergenic
TTGCAAGAATCACATAGCTT+AGG 0.521043 8_4:-54172231 None:intergenic
CATAAGATGGGTATTGAAAG+AGG 0.525020 8_4:+54172171 Msa1333900:exon
ATTAAAACAGTTGATCCAGT+TGG 0.525383 8_4:-54173623 None:intergenic
GGCACCCCATCCAATAGGAA+TGG 0.527469 8_4:-54173980 None:intergenic
TTGTTTGAATGAATTTGAGT+TGG 0.539673 8_4:-54172057 None:intergenic
ATGCTAATGGACTGTCCATA+CGG 0.541142 8_4:+54173347 Msa1333900:CDS
TTTGATGATTTCTTAGGGTG+CGG 0.546755 8_4:-54172029 None:intergenic
ATCCCCATTCCTATTGGATG+GGG 0.548830 8_4:+54173976 Msa1333900:three_prime_UTR
GAGCGAGTGGATTGGCGGAG+TGG 0.557021 8_4:-54172452 None:intergenic
TTTCTAATGGGATCAGATCA+CGG 0.558451 8_4:+54173941 Msa1333900:three_prime_UTR
AATACGGATACAGATACAGC+TGG 0.560432 8_4:-54174014 None:intergenic
TGCGTCAGCTTTGCACGTGA+CGG 0.560515 8_4:-54172397 None:intergenic
TTATGAGGTACAGAGAGAAG+AGG 0.563746 8_4:+54173165 Msa1333900:CDS
TTACACATCGCGCACTAATG+AGG 0.564234 8_4:+54173579 Msa1333900:three_prime_UTR
TGGATTGGCGGAGTGGATGT+CGG 0.572687 8_4:-54172445 None:intergenic
AGTAACCAAGGGGTGGTGCA+AGG 0.573333 8_4:+54173104 Msa1333900:CDS
ATCGGAATCGATGGTTTCAG+GGG 0.573412 8_4:+54173073 Msa1333900:CDS
TTTGTTAGCAGAGTGAATGG+TGG 0.574357 8_4:-54172316 None:intergenic
CAAGAATCACATAGCTTAGG+TGG 0.574456 8_4:-54172228 None:intergenic
GATTAGTGATGATGATTCTG+TGG 0.575368 8_4:+54173462 Msa1333900:three_prime_UTR
GATTCAGCGGAGTCAAAGAA+AGG 0.575805 8_4:-54172501 None:intergenic
GTGACGACGAGCGAGTGGAT+TGG 0.575999 8_4:-54172460 None:intergenic
TTATGATTCATCATCCGCGC+TGG 0.581963 8_4:-54172813 None:intergenic
CAGTCCATTAGCATAGATGA+AGG 0.582055 8_4:-54173338 None:intergenic
ATTCTAACACATTGAAACCA+TGG 0.582224 8_4:-54173430 None:intergenic
AGCATAACATAACATAAGAT+GGG 0.590121 8_4:+54172159 Msa1333900:exon
TCTTAGCTTATTTGAATGGG+AGG 0.591279 8_4:-54172091 None:intergenic
TGGAATGGATCGTGAAGCGA+GGG 0.592479 8_4:+54173142 Msa1333900:CDS
ACGACGAGCGAGTGGATTGG+CGG 0.592706 8_4:-54172457 None:intergenic
CAAGGAGCAACACAATTATG+TGG 0.592806 8_4:+54173122 Msa1333900:CDS
TGTATGTATAGTCAAGTGAC+TGG 0.593195 8_4:-54171995 None:intergenic
ATGATGAATCATAACTCAGA+AGG 0.596503 8_4:+54172822 Msa1333900:CDS
GATCAGCAGGGTTATAGAGA+CGG 0.597767 8_4:-54173304 None:intergenic
CGTTCGTGACGACGAGCGAG+TGG 0.599256 8_4:-54172465 None:intergenic
ATCGTGAAGCGAGGGTTATG+AGG 0.603818 8_4:+54173150 Msa1333900:CDS
TTCATCATCCGCGCTGGAGT+AGG 0.609886 8_4:-54172807 None:intergenic
CCCGGCCTAGAATTAAAGGC+CGG 0.612766 8_4:+54173246 Msa1333900:CDS
CTATGGCTAATGGAATGTGA+TGG 0.620066 8_4:-54172894 None:intergenic
ATCTTCACTTGACGTAGGAG+TGG 0.622983 8_4:+54173007 Msa1333900:CDS
TCGTCATCTTCACTTGACGT+AGG 0.628545 8_4:+54173002 Msa1333900:CDS
GGGGTGTGAATAGTAACCAA+GGG 0.630822 8_4:+54173093 Msa1333900:CDS
GGATTTGACGACGGATTCAG+CGG 0.633353 8_4:-54172514 None:intergenic
GAAAAGCTTATGCAGAAACC+CGG 0.633617 8_4:+54173228 Msa1333900:CDS
GTGGAATGGATCGTGAAGCG+AGG 0.634097 8_4:+54173141 Msa1333900:CDS
GGAGTCAAAGAAAGGCTCGA+CGG 0.644574 8_4:-54172493 None:intergenic
CACACATCCAGACGCGCTCG+TGG 0.646583 8_4:-54172350 None:intergenic
AGTGGTGCCAGATGCAAACA+CGG 0.653433 8_4:+54173025 Msa1333900:CDS
ATAGATGAAGGAACTGCGAG+AGG 0.656412 8_4:-54173326 None:intergenic
TAAACGAACCGAAATTGACT+CGG 0.658214 8_4:+54173274 Msa1333900:CDS
TTCGTTGTTCCTACTGACGA+CGG 0.659626 8_4:+54172573 Msa1333900:CDS
CACCCCATCCAATAGGAATG+GGG 0.668252 8_4:-54173978 None:intergenic
ATTAGTGATGATGATTCTGT+GGG 0.668921 8_4:+54173463 Msa1333900:three_prime_UTR
GGCGGTGGAGGATTTGACGA+CGG 0.677124 8_4:-54172523 None:intergenic
ATAGAAATGCAGAATCAGAA+CGG 0.678407 8_4:-54172278 None:intergenic
AGTATGAATCTCCTATACCA+TGG 0.679029 8_4:+54173413 Msa1333900:three_prime_UTR
TGAATTTGTTAGATTTGGCG+CGG 0.681844 8_4:+54173682 Msa1333900:three_prime_UTR
AAACAAGGTCAGGATAACAG+AGG 0.687745 8_4:+54173390 Msa1333900:three_prime_UTR
TGTGAATAGTAACCAAGGGG+TGG 0.689533 8_4:+54173097 Msa1333900:CDS
ATACAGCTGGAGAAAAGGAG+TGG 0.692065 8_4:-54174001 None:intergenic
TCGGAATCGATGGTTTCAGG+GGG 0.701775 8_4:+54173074 Msa1333900:CDS
ATGATGCTGAAGCAGCTGCG+TGG 0.709512 8_4:+54172607 Msa1333900:CDS
AACAACGAAATTGAAAGACG+CGG 0.720436 8_4:-54172559 None:intergenic
GGGTGTGAATAGTAACCAAG+GGG 0.734808 8_4:+54173094 Msa1333900:CDS
AAGATGGGTATTGAAAGAGG+AGG 0.750089 8_4:+54172174 Msa1333900:exon
AAACTAAACCTACTCCAGCG+CGG 0.776053 8_4:+54172799 Msa1333900:CDS
GAACTGCGAGAGGATCAGCA+GGG 0.795439 8_4:-54173316 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAACAAAATAATCAAA+CGG - chr8_4:54173491-54173510 None:intergenic 10.0%
!!! TGTTGATTATTATTATTATT+AGG + chr8_4:54173648-54173667 Msa1333900:three_prime_UTR 10.0%
!! ATAAAAACAAAATAATCAAA+CGG - chr8_4:54173491-54173510 None:intergenic 10.0%
!!! TGTTGATTATTATTATTATT+AGG + chr8_4:54173648-54173667 Msa1333900:three_prime_UTR 10.0%
!! TTAATTAATTACTTACGCTA+TGG - chr8_4:54172914-54172933 None:intergenic 20.0%
!! ATTATTATTAGGATGAAAAG+TGG + chr8_4:54173659-54173678 Msa1333900:three_prime_UTR 20.0%
!! TAACAAGCAAAAGTAAAAAA+CGG - chr8_4:54173791-54173810 None:intergenic 20.0%
!! CTTCAGAAAAAAGAAAAATA+CGG - chr8_4:54174033-54174052 None:intergenic 20.0%
!! TTAATTAATTACTTACGCTA+TGG - chr8_4:54172914-54172933 None:intergenic 20.0%
!! ATTATTATTAGGATGAAAAG+TGG + chr8_4:54173659-54173678 Msa1333900:three_prime_UTR 20.0%
!! TAACAAGCAAAAGTAAAAAA+CGG - chr8_4:54173791-54173810 None:intergenic 20.0%
!! CTTCAGAAAAAAGAAAAATA+CGG - chr8_4:54174033-54174052 None:intergenic 20.0%
!! TGTTTGAATGAATTTGAGTT+GGG - chr8_4:54172059-54172078 None:intergenic 25.0%
! TTGTTTGAATGAATTTGAGT+TGG - chr8_4:54172060-54172079 None:intergenic 25.0%
! TAGCATAACATAACATAAGA+TGG + chr8_4:54172158-54172177 Msa1333900:exon 25.0%
! AGCATAACATAACATAAGAT+GGG + chr8_4:54172159-54172178 Msa1333900:exon 25.0%
! GAGTAATCAAAATCAAGAAA+TGG - chr8_4:54172717-54172736 None:intergenic 25.0%
!! TCAGAGATATCATACAATTT+TGG + chr8_4:54173050-54173069 Msa1333900:CDS 25.0%
!! GATATCATACAATTTTGGAT+CGG + chr8_4:54173055-54173074 Msa1333900:CDS 25.0%
! AACAAGCAAAAGTAAAAAAC+GGG - chr8_4:54173790-54173809 None:intergenic 25.0%
!!! TACTTTTGCTTGTTAAAGAA+AGG + chr8_4:54173796-54173815 Msa1333900:three_prime_UTR 25.0%
! TTAAAGAAAGGAGAACTTTA+CGG + chr8_4:54173808-54173827 Msa1333900:three_prime_UTR 25.0%
!!! TTTGGTTGATAGTATTAATC+TGG + chr8_4:54173835-54173854 Msa1333900:three_prime_UTR 25.0%
!!! AAGAAAGTGTCTTTTTCTAA+TGG + chr8_4:54173928-54173947 Msa1333900:three_prime_UTR 25.0%
!!! AGAAAGTGTCTTTTTCTAAT+GGG + chr8_4:54173929-54173948 Msa1333900:three_prime_UTR 25.0%
!! TGTTTGAATGAATTTGAGTT+GGG - chr8_4:54172059-54172078 None:intergenic 25.0%
! TTGTTTGAATGAATTTGAGT+TGG - chr8_4:54172060-54172079 None:intergenic 25.0%
! TAGCATAACATAACATAAGA+TGG + chr8_4:54172158-54172177 Msa1333900:exon 25.0%
! AGCATAACATAACATAAGAT+GGG + chr8_4:54172159-54172178 Msa1333900:exon 25.0%
! GAGTAATCAAAATCAAGAAA+TGG - chr8_4:54172717-54172736 None:intergenic 25.0%
!! TCAGAGATATCATACAATTT+TGG + chr8_4:54173050-54173069 Msa1333900:CDS 25.0%
!! GATATCATACAATTTTGGAT+CGG + chr8_4:54173055-54173074 Msa1333900:CDS 25.0%
! AACAAGCAAAAGTAAAAAAC+GGG - chr8_4:54173790-54173809 None:intergenic 25.0%
!!! TACTTTTGCTTGTTAAAGAA+AGG + chr8_4:54173796-54173815 Msa1333900:three_prime_UTR 25.0%
! TTAAAGAAAGGAGAACTTTA+CGG + chr8_4:54173808-54173827 Msa1333900:three_prime_UTR 25.0%
!!! TTTGGTTGATAGTATTAATC+TGG + chr8_4:54173835-54173854 Msa1333900:three_prime_UTR 25.0%
!!! AAGAAAGTGTCTTTTTCTAA+TGG + chr8_4:54173928-54173947 Msa1333900:three_prime_UTR 25.0%
!!! AGAAAGTGTCTTTTTCTAAT+GGG + chr8_4:54173929-54173948 Msa1333900:three_prime_UTR 25.0%
! GTGAGTTTGATGATTTCTTA+GGG - chr8_4:54172037-54172056 None:intergenic 30.0%
GCTTCTTAGCTTATTTGAAT+GGG - chr8_4:54172097-54172116 None:intergenic 30.0%
ATAGAAATGCAGAATCAGAA+CGG - chr8_4:54172281-54172300 None:intergenic 30.0%
ATCTTGAGTTTCATTGAGTT+TGG - chr8_4:54172658-54172677 None:intergenic 30.0%
ATGATGAATCATAACTCAGA+AGG + chr8_4:54172822-54172841 Msa1333900:CDS 30.0%
!! TGATTTGGTTTGTTATTAGC+AGG + chr8_4:54172977-54172996 Msa1333900:intron 30.0%
! GAATAGTCTTCTCGAATTTT+CGG - chr8_4:54173196-54173215 None:intergenic 30.0%
!!! TTCCCACTTTTTAGTAAACA+AGG + chr8_4:54173375-54173394 Msa1333900:exon 30.0%
! GACCTTGTTTACTAAAAAGT+GGG - chr8_4:54173380-54173399 None:intergenic 30.0%
! TGACCTTGTTTACTAAAAAG+TGG - chr8_4:54173381-54173400 None:intergenic 30.0%
!! ACTTTTTAGTAAACAAGGTC+AGG + chr8_4:54173380-54173399 Msa1333900:exon 30.0%
ATTCTAACACATTGAAACCA+TGG - chr8_4:54173433-54173452 None:intergenic 30.0%
! ATTAGTGATGATGATTCTGT+GGG + chr8_4:54173463-54173482 Msa1333900:three_prime_UTR 30.0%
ATTAAAACAGTTGATCCAGT+TGG - chr8_4:54173626-54173645 None:intergenic 30.0%
!! AGTGGTGAATTTGTTAGATT+TGG + chr8_4:54173677-54173696 Msa1333900:three_prime_UTR 30.0%
ACTTGAATTGAAGATTTGTC+TGG + chr8_4:54173754-54173773 Msa1333900:three_prime_UTR 30.0%
TAAAGAAAGGAGAACTTTAC+GGG + chr8_4:54173809-54173828 Msa1333900:three_prime_UTR 30.0%
! GTGAGTTTGATGATTTCTTA+GGG - chr8_4:54172037-54172056 None:intergenic 30.0%
GCTTCTTAGCTTATTTGAAT+GGG - chr8_4:54172097-54172116 None:intergenic 30.0%
ATAGAAATGCAGAATCAGAA+CGG - chr8_4:54172281-54172300 None:intergenic 30.0%
ATCTTGAGTTTCATTGAGTT+TGG - chr8_4:54172658-54172677 None:intergenic 30.0%
ATGATGAATCATAACTCAGA+AGG + chr8_4:54172822-54172841 Msa1333900:CDS 30.0%
!! TGATTTGGTTTGTTATTAGC+AGG + chr8_4:54172977-54172996 Msa1333900:intron 30.0%
! GAATAGTCTTCTCGAATTTT+CGG - chr8_4:54173196-54173215 None:intergenic 30.0%
!!! TTCCCACTTTTTAGTAAACA+AGG + chr8_4:54173375-54173394 Msa1333900:exon 30.0%
! GACCTTGTTTACTAAAAAGT+GGG - chr8_4:54173380-54173399 None:intergenic 30.0%
! TGACCTTGTTTACTAAAAAG+TGG - chr8_4:54173381-54173400 None:intergenic 30.0%
!! ACTTTTTAGTAAACAAGGTC+AGG + chr8_4:54173380-54173399 Msa1333900:exon 30.0%
ATTCTAACACATTGAAACCA+TGG - chr8_4:54173433-54173452 None:intergenic 30.0%
! ATTAGTGATGATGATTCTGT+GGG + chr8_4:54173463-54173482 Msa1333900:three_prime_UTR 30.0%
ATTAAAACAGTTGATCCAGT+TGG - chr8_4:54173626-54173645 None:intergenic 30.0%
!! AGTGGTGAATTTGTTAGATT+TGG + chr8_4:54173677-54173696 Msa1333900:three_prime_UTR 30.0%
ACTTGAATTGAAGATTTGTC+TGG + chr8_4:54173754-54173773 Msa1333900:three_prime_UTR 30.0%
TAAAGAAAGGAGAACTTTAC+GGG + chr8_4:54173809-54173828 Msa1333900:three_prime_UTR 30.0%
TGTATGTATAGTCAAGTGAC+TGG - chr8_4:54171998-54172017 None:intergenic 35.0%
! TTTGATGATTTCTTAGGGTG+CGG - chr8_4:54172032-54172051 None:intergenic 35.0%
! GGTGAGTTTGATGATTTCTT+AGG - chr8_4:54172038-54172057 None:intergenic 35.0%
TCTTAGCTTATTTGAATGGG+AGG - chr8_4:54172094-54172113 None:intergenic 35.0%
CGCTTCTTAGCTTATTTGAA+TGG - chr8_4:54172098-54172117 None:intergenic 35.0%
!! CATAAGATGGGTATTGAAAG+AGG + chr8_4:54172171-54172190 Msa1333900:exon 35.0%
TTGCAAGAATCACATAGCTT+AGG - chr8_4:54172234-54172253 None:intergenic 35.0%
AACAACGAAATTGAAAGACG+CGG - chr8_4:54172562-54172581 None:intergenic 35.0%
CTGATTCCGAATCCTAATTT+CGG + chr8_4:54172630-54172649 Msa1333900:CDS 35.0%
TTGGATCCGAAATTAGGATT+CGG - chr8_4:54172639-54172658 None:intergenic 35.0%
TTGAGTTTGGATCCGAAATT+AGG - chr8_4:54172645-54172664 None:intergenic 35.0%
AGAGATGTTCTTCTCTGATA+TGG + chr8_4:54172689-54172708 Msa1333900:CDS 35.0%
TGCTGCAGTTAATATTGTTC+TGG - chr8_4:54172749-54172768 None:intergenic 35.0%
!! GGAATGTGATGGATAGTTAA+AGG - chr8_4:54172886-54172905 None:intergenic 35.0%
ATTACTTACGCTATGGCTAA+TGG - chr8_4:54172907-54172926 None:intergenic 35.0%
AGCAACACAATTATGTGGAA+TGG + chr8_4:54173127-54173146 Msa1333900:CDS 35.0%
TAAACGAACCGAAATTGACT+CGG + chr8_4:54173274-54173293 Msa1333900:CDS 35.0%
AGTTCCTTCATCTATGCTAA+TGG + chr8_4:54173334-54173353 Msa1333900:CDS 35.0%
AGTATGAATCTCCTATACCA+TGG + chr8_4:54173413-54173432 Msa1333900:three_prime_UTR 35.0%
ACACATTGAAACCATGGTAT+AGG - chr8_4:54173427-54173446 None:intergenic 35.0%
! GATTAGTGATGATGATTCTG+TGG + chr8_4:54173462-54173481 Msa1333900:three_prime_UTR 35.0%
!! TGAATTTGTTAGATTTGGCG+CGG + chr8_4:54173682-54173701 Msa1333900:three_prime_UTR 35.0%
TTTCTAATGGGATCAGATCA+CGG + chr8_4:54173941-54173960 Msa1333900:three_prime_UTR 35.0%
TGTATGTATAGTCAAGTGAC+TGG - chr8_4:54171998-54172017 None:intergenic 35.0%
! TTTGATGATTTCTTAGGGTG+CGG - chr8_4:54172032-54172051 None:intergenic 35.0%
! GGTGAGTTTGATGATTTCTT+AGG - chr8_4:54172038-54172057 None:intergenic 35.0%
TCTTAGCTTATTTGAATGGG+AGG - chr8_4:54172094-54172113 None:intergenic 35.0%
CGCTTCTTAGCTTATTTGAA+TGG - chr8_4:54172098-54172117 None:intergenic 35.0%
!! CATAAGATGGGTATTGAAAG+AGG + chr8_4:54172171-54172190 Msa1333900:exon 35.0%
TTGCAAGAATCACATAGCTT+AGG - chr8_4:54172234-54172253 None:intergenic 35.0%
AACAACGAAATTGAAAGACG+CGG - chr8_4:54172562-54172581 None:intergenic 35.0%
CTGATTCCGAATCCTAATTT+CGG + chr8_4:54172630-54172649 Msa1333900:CDS 35.0%
TTGGATCCGAAATTAGGATT+CGG - chr8_4:54172639-54172658 None:intergenic 35.0%
TTGAGTTTGGATCCGAAATT+AGG - chr8_4:54172645-54172664 None:intergenic 35.0%
AGAGATGTTCTTCTCTGATA+TGG + chr8_4:54172689-54172708 Msa1333900:CDS 35.0%
TGCTGCAGTTAATATTGTTC+TGG - chr8_4:54172749-54172768 None:intergenic 35.0%
!! GGAATGTGATGGATAGTTAA+AGG - chr8_4:54172886-54172905 None:intergenic 35.0%
ATTACTTACGCTATGGCTAA+TGG - chr8_4:54172907-54172926 None:intergenic 35.0%
AGCAACACAATTATGTGGAA+TGG + chr8_4:54173127-54173146 Msa1333900:CDS 35.0%
TAAACGAACCGAAATTGACT+CGG + chr8_4:54173274-54173293 Msa1333900:CDS 35.0%
AGTTCCTTCATCTATGCTAA+TGG + chr8_4:54173334-54173353 Msa1333900:CDS 35.0%
AGTATGAATCTCCTATACCA+TGG + chr8_4:54173413-54173432 Msa1333900:three_prime_UTR 35.0%
ACACATTGAAACCATGGTAT+AGG - chr8_4:54173427-54173446 None:intergenic 35.0%
! GATTAGTGATGATGATTCTG+TGG + chr8_4:54173462-54173481 Msa1333900:three_prime_UTR 35.0%
!! TGAATTTGTTAGATTTGGCG+CGG + chr8_4:54173682-54173701 Msa1333900:three_prime_UTR 35.0%
TTTCTAATGGGATCAGATCA+CGG + chr8_4:54173941-54173960 Msa1333900:three_prime_UTR 35.0%
!! AAGATGGGTATTGAAAGAGG+AGG + chr8_4:54172174-54172193 Msa1333900:exon 40.0%
! GGACTAAAGAGTTTTCGAAG+CGG + chr8_4:54172195-54172214 Msa1333900:CDS 40.0%
CAAGAATCACATAGCTTAGG+TGG - chr8_4:54172231-54172250 None:intergenic 40.0%
TTTGTTAGCAGAGTGAATGG+TGG - chr8_4:54172319-54172338 None:intergenic 40.0%
!! GAGTTTGTTAGCAGAGTGAA+TGG - chr8_4:54172322-54172341 None:intergenic 40.0%
!! GGAGTAGGTTTAGTTTGAAC+AGG - chr8_4:54172795-54172814 None:intergenic 40.0%
CTATGGCTAATGGAATGTGA+TGG - chr8_4:54172897-54172916 None:intergenic 40.0%
! CAATTTTGGATCGGAATCGA+TGG + chr8_4:54173064-54173083 Msa1333900:CDS 40.0%
CAAGGAGCAACACAATTATG+TGG + chr8_4:54173122-54173141 Msa1333900:CDS 40.0%
TTATGAGGTACAGAGAGAAG+AGG + chr8_4:54173165-54173184 Msa1333900:CDS 40.0%
GAAAAGCTTATGCAGAAACC+CGG + chr8_4:54173228-54173247 Msa1333900:CDS 40.0%
CAGTCCATTAGCATAGATGA+AGG - chr8_4:54173341-54173360 None:intergenic 40.0%
!! ATGCTAATGGACTGTCCATA+CGG + chr8_4:54173347-54173366 Msa1333900:CDS 40.0%
AAACAAGGTCAGGATAACAG+AGG + chr8_4:54173390-54173409 Msa1333900:three_prime_UTR 40.0%
TGTCTCTGATCTTGATCTGA+GGG - chr8_4:54173546-54173565 None:intergenic 40.0%
TTGTCTCTGATCTTGATCTG+AGG - chr8_4:54173547-54173566 None:intergenic 40.0%
! TCAGTCGATTTCTTACCAAC+TGG + chr8_4:54173608-54173627 Msa1333900:three_prime_UTR 40.0%
! AAGAGCATGGTGAAAAAGCT+TGG + chr8_4:54173727-54173746 Msa1333900:three_prime_UTR 40.0%
TACAGATACAGCTGGAGAAA+AGG - chr8_4:54174009-54174028 None:intergenic 40.0%
AATACGGATACAGATACAGC+TGG - chr8_4:54174017-54174036 None:intergenic 40.0%
!! AAGATGGGTATTGAAAGAGG+AGG + chr8_4:54172174-54172193 Msa1333900:exon 40.0%
! GGACTAAAGAGTTTTCGAAG+CGG + chr8_4:54172195-54172214 Msa1333900:CDS 40.0%
CAAGAATCACATAGCTTAGG+TGG - chr8_4:54172231-54172250 None:intergenic 40.0%
TTTGTTAGCAGAGTGAATGG+TGG - chr8_4:54172319-54172338 None:intergenic 40.0%
!! GAGTTTGTTAGCAGAGTGAA+TGG - chr8_4:54172322-54172341 None:intergenic 40.0%
!! GGAGTAGGTTTAGTTTGAAC+AGG - chr8_4:54172795-54172814 None:intergenic 40.0%
CTATGGCTAATGGAATGTGA+TGG - chr8_4:54172897-54172916 None:intergenic 40.0%
! CAATTTTGGATCGGAATCGA+TGG + chr8_4:54173064-54173083 Msa1333900:CDS 40.0%
CAAGGAGCAACACAATTATG+TGG + chr8_4:54173122-54173141 Msa1333900:CDS 40.0%
TTATGAGGTACAGAGAGAAG+AGG + chr8_4:54173165-54173184 Msa1333900:CDS 40.0%
GAAAAGCTTATGCAGAAACC+CGG + chr8_4:54173228-54173247 Msa1333900:CDS 40.0%
CAGTCCATTAGCATAGATGA+AGG - chr8_4:54173341-54173360 None:intergenic 40.0%
!! ATGCTAATGGACTGTCCATA+CGG + chr8_4:54173347-54173366 Msa1333900:CDS 40.0%
AAACAAGGTCAGGATAACAG+AGG + chr8_4:54173390-54173409 Msa1333900:three_prime_UTR 40.0%
TGTCTCTGATCTTGATCTGA+GGG - chr8_4:54173546-54173565 None:intergenic 40.0%
TTGTCTCTGATCTTGATCTG+AGG - chr8_4:54173547-54173566 None:intergenic 40.0%
! TCAGTCGATTTCTTACCAAC+TGG + chr8_4:54173608-54173627 Msa1333900:three_prime_UTR 40.0%
! AAGAGCATGGTGAAAAAGCT+TGG + chr8_4:54173727-54173746 Msa1333900:three_prime_UTR 40.0%
TACAGATACAGCTGGAGAAA+AGG - chr8_4:54174009-54174028 None:intergenic 40.0%
AATACGGATACAGATACAGC+TGG - chr8_4:54174017-54174036 None:intergenic 40.0%
! TAAAGAGTTTTCGAAGCGGC+TGG + chr8_4:54172199-54172218 Msa1333900:CDS 45.0%
ATCAGAACGGCAAAAAAGCG+CGG - chr8_4:54172268-54172287 None:intergenic 45.0%
GATTCAGCGGAGTCAAAGAA+AGG - chr8_4:54172504-54172523 None:intergenic 45.0%
TTCGTTGTTCCTACTGACGA+CGG + chr8_4:54172573-54172592 Msa1333900:CDS 45.0%
AGGAACAACGCTATCGTTCA+TGG - chr8_4:54172775-54172794 None:intergenic 45.0%
AAACTAAACCTACTCCAGCG+CGG + chr8_4:54172799-54172818 Msa1333900:CDS 45.0%
TTATGATTCATCATCCGCGC+TGG - chr8_4:54172816-54172835 None:intergenic 45.0%
TCGTCATCTTCACTTGACGT+AGG + chr8_4:54173002-54173021 Msa1333900:CDS 45.0%
ATCTTCACTTGACGTAGGAG+TGG + chr8_4:54173007-54173026 Msa1333900:CDS 45.0%
GATCGGAATCGATGGTTTCA+GGG + chr8_4:54173072-54173091 Msa1333900:CDS 45.0%
ATCGGAATCGATGGTTTCAG+GGG + chr8_4:54173073-54173092 Msa1333900:CDS 45.0%
GGGGTGTGAATAGTAACCAA+GGG + chr8_4:54173093-54173112 Msa1333900:CDS 45.0%
GGGTGTGAATAGTAACCAAG+GGG + chr8_4:54173094-54173113 Msa1333900:CDS 45.0%
TGTGAATAGTAACCAAGGGG+TGG + chr8_4:54173097-54173116 Msa1333900:CDS 45.0%
GAAACCCGGCCTAGAATTAA+AGG + chr8_4:54173242-54173261 Msa1333900:CDS 45.0%
! TTTCGGTTCGTTTAGCGAAC+CGG - chr8_4:54173268-54173287 None:intergenic 45.0%
!! AACCGAAATTGACTCGGATG+TGG + chr8_4:54173280-54173299 Msa1333900:CDS 45.0%
GTCCACATCCGAGTCAATTT+CGG - chr8_4:54173285-54173304 None:intergenic 45.0%
GATCAGCAGGGTTATAGAGA+CGG - chr8_4:54173307-54173326 None:intergenic 45.0%
ATAGATGAAGGAACTGCGAG+AGG - chr8_4:54173329-54173348 None:intergenic 45.0%
TTACACATCGCGCACTAATG+AGG + chr8_4:54173579-54173598 Msa1333900:three_prime_UTR 45.0%
TTAGATTTGGCGCGGTTGTA+CGG + chr8_4:54173690-54173709 Msa1333900:three_prime_UTR 45.0%
! GGAGAACTTTACGGGACTTT+TGG + chr8_4:54173817-54173836 Msa1333900:three_prime_UTR 45.0%
ATCTGCATCCCCATTCCTAT+TGG + chr8_4:54173970-54173989 Msa1333900:three_prime_UTR 45.0%
CATCCCCATTCCTATTGGAT+GGG + chr8_4:54173975-54173994 Msa1333900:three_prime_UTR 45.0%
ATCCCCATTCCTATTGGATG+GGG + chr8_4:54173976-54173995 Msa1333900:three_prime_UTR 45.0%
ATACAGCTGGAGAAAAGGAG+TGG - chr8_4:54174004-54174023 None:intergenic 45.0%
! GTATAGTCAAGTGACTGGTC+AGG - chr8_4:54171993-54172012 None:intergenic 45.0%
! TAAAGAGTTTTCGAAGCGGC+TGG + chr8_4:54172199-54172218 Msa1333900:CDS 45.0%
ATCAGAACGGCAAAAAAGCG+CGG - chr8_4:54172268-54172287 None:intergenic 45.0%
GATTCAGCGGAGTCAAAGAA+AGG - chr8_4:54172504-54172523 None:intergenic 45.0%
TTCGTTGTTCCTACTGACGA+CGG + chr8_4:54172573-54172592 Msa1333900:CDS 45.0%
AGGAACAACGCTATCGTTCA+TGG - chr8_4:54172775-54172794 None:intergenic 45.0%
AAACTAAACCTACTCCAGCG+CGG + chr8_4:54172799-54172818 Msa1333900:CDS 45.0%
TTATGATTCATCATCCGCGC+TGG - chr8_4:54172816-54172835 None:intergenic 45.0%
TCGTCATCTTCACTTGACGT+AGG + chr8_4:54173002-54173021 Msa1333900:CDS 45.0%
ATCTTCACTTGACGTAGGAG+TGG + chr8_4:54173007-54173026 Msa1333900:CDS 45.0%
GATCGGAATCGATGGTTTCA+GGG + chr8_4:54173072-54173091 Msa1333900:CDS 45.0%
ATCGGAATCGATGGTTTCAG+GGG + chr8_4:54173073-54173092 Msa1333900:CDS 45.0%
GGGGTGTGAATAGTAACCAA+GGG + chr8_4:54173093-54173112 Msa1333900:CDS 45.0%
GGGTGTGAATAGTAACCAAG+GGG + chr8_4:54173094-54173113 Msa1333900:CDS 45.0%
TGTGAATAGTAACCAAGGGG+TGG + chr8_4:54173097-54173116 Msa1333900:CDS 45.0%
GAAACCCGGCCTAGAATTAA+AGG + chr8_4:54173242-54173261 Msa1333900:CDS 45.0%
! TTTCGGTTCGTTTAGCGAAC+CGG - chr8_4:54173268-54173287 None:intergenic 45.0%
!! AACCGAAATTGACTCGGATG+TGG + chr8_4:54173280-54173299 Msa1333900:CDS 45.0%
GTCCACATCCGAGTCAATTT+CGG - chr8_4:54173285-54173304 None:intergenic 45.0%
GATCAGCAGGGTTATAGAGA+CGG - chr8_4:54173307-54173326 None:intergenic 45.0%
ATAGATGAAGGAACTGCGAG+AGG - chr8_4:54173329-54173348 None:intergenic 45.0%
TTACACATCGCGCACTAATG+AGG + chr8_4:54173579-54173598 Msa1333900:three_prime_UTR 45.0%
TTAGATTTGGCGCGGTTGTA+CGG + chr8_4:54173690-54173709 Msa1333900:three_prime_UTR 45.0%
! GGAGAACTTTACGGGACTTT+TGG + chr8_4:54173817-54173836 Msa1333900:three_prime_UTR 45.0%
ATCTGCATCCCCATTCCTAT+TGG + chr8_4:54173970-54173989 Msa1333900:three_prime_UTR 45.0%
CATCCCCATTCCTATTGGAT+GGG + chr8_4:54173975-54173994 Msa1333900:three_prime_UTR 45.0%
ATCCCCATTCCTATTGGATG+GGG + chr8_4:54173976-54173995 Msa1333900:three_prime_UTR 45.0%
ATACAGCTGGAGAAAAGGAG+TGG - chr8_4:54174004-54174023 None:intergenic 45.0%
!! TTAATTAATTAATAATGATT+TGG + chr8_4:54172962-54172981 Msa1333900:intron 5.0%
!! TTAATTAATTAATAATGATT+TGG + chr8_4:54172962-54172981 Msa1333900:intron 5.0%
GAGTCAAAGAAAGGCTCGAC+GGG - chr8_4:54172495-54172514 None:intergenic 50.0%
GGAGTCAAAGAAAGGCTCGA+CGG - chr8_4:54172496-54172515 None:intergenic 50.0%
! GGATTTGACGACGGATTCAG+CGG - chr8_4:54172517-54172536 None:intergenic 50.0%
GTTCCTACTGACGACGGTTA+CGG + chr8_4:54172579-54172598 Msa1333900:CDS 50.0%
! AGTGGTGCCAGATGCAAACA+CGG + chr8_4:54173025-54173044 Msa1333900:CDS 50.0%
TCTGACACCGTGTTTGCATC+TGG - chr8_4:54173035-54173054 None:intergenic 50.0%
GGATCGGAATCGATGGTTTC+AGG + chr8_4:54173071-54173090 Msa1333900:CDS 50.0%
TCGGAATCGATGGTTTCAGG+GGG + chr8_4:54173074-54173093 Msa1333900:CDS 50.0%
! GGGGGTGTGAATAGTAACCA+AGG + chr8_4:54173092-54173111 Msa1333900:CDS 50.0%
TGGAATGGATCGTGAAGCGA+GGG + chr8_4:54173142-54173161 Msa1333900:CDS 50.0%
ATCGTGAAGCGAGGGTTATG+AGG + chr8_4:54173150-54173169 Msa1333900:CDS 50.0%
ACCGGCCTTTAATTCTAGGC+CGG - chr8_4:54173250-54173269 None:intergenic 50.0%
GCGAACCGGCCTTTAATTCT+AGG - chr8_4:54173254-54173273 None:intergenic 50.0%
GCATGGTGAAAAAGCTTGGC+TGG + chr8_4:54173731-54173750 Msa1333900:three_prime_UTR 50.0%
GCATCCCCATTCCTATTGGA+TGG + chr8_4:54173974-54173993 Msa1333900:three_prime_UTR 50.0%
CACCCCATCCAATAGGAATG+GGG - chr8_4:54173981-54174000 None:intergenic 50.0%
GCACCCCATCCAATAGGAAT+GGG - chr8_4:54173982-54174001 None:intergenic 50.0%
GAGTCAAAGAAAGGCTCGAC+GGG - chr8_4:54172495-54172514 None:intergenic 50.0%
GGAGTCAAAGAAAGGCTCGA+CGG - chr8_4:54172496-54172515 None:intergenic 50.0%
! GGATTTGACGACGGATTCAG+CGG - chr8_4:54172517-54172536 None:intergenic 50.0%
GTTCCTACTGACGACGGTTA+CGG + chr8_4:54172579-54172598 Msa1333900:CDS 50.0%
! AGTGGTGCCAGATGCAAACA+CGG + chr8_4:54173025-54173044 Msa1333900:CDS 50.0%
TCTGACACCGTGTTTGCATC+TGG - chr8_4:54173035-54173054 None:intergenic 50.0%
GGATCGGAATCGATGGTTTC+AGG + chr8_4:54173071-54173090 Msa1333900:CDS 50.0%
TCGGAATCGATGGTTTCAGG+GGG + chr8_4:54173074-54173093 Msa1333900:CDS 50.0%
! GGGGGTGTGAATAGTAACCA+AGG + chr8_4:54173092-54173111 Msa1333900:CDS 50.0%
TGGAATGGATCGTGAAGCGA+GGG + chr8_4:54173142-54173161 Msa1333900:CDS 50.0%
ATCGTGAAGCGAGGGTTATG+AGG + chr8_4:54173150-54173169 Msa1333900:CDS 50.0%
ACCGGCCTTTAATTCTAGGC+CGG - chr8_4:54173250-54173269 None:intergenic 50.0%
GCGAACCGGCCTTTAATTCT+AGG - chr8_4:54173254-54173273 None:intergenic 50.0%
GCATGGTGAAAAAGCTTGGC+TGG + chr8_4:54173731-54173750 Msa1333900:three_prime_UTR 50.0%
GCATCCCCATTCCTATTGGA+TGG + chr8_4:54173974-54173993 Msa1333900:three_prime_UTR 50.0%
CACCCCATCCAATAGGAATG+GGG - chr8_4:54173981-54174000 None:intergenic 50.0%
GCACCCCATCCAATAGGAAT+GGG - chr8_4:54173982-54174001 None:intergenic 50.0%
! AGAACGGCAAAAAAGCGCGG+CGG - chr8_4:54172265-54172284 None:intergenic 55.0%
TGCGTCAGCTTTGCACGTGA+CGG - chr8_4:54172400-54172419 None:intergenic 55.0%
!! TGGATTGGCGGAGTGGATGT+CGG - chr8_4:54172448-54172467 None:intergenic 55.0%
TGACCGTAACCGTCGTCAGT+AGG - chr8_4:54172585-54172604 None:intergenic 55.0%
ATGATGCTGAAGCAGCTGCG+TGG + chr8_4:54172607-54172626 Msa1333900:CDS 55.0%
TTCATCATCCGCGCTGGAGT+AGG - chr8_4:54172810-54172829 None:intergenic 55.0%
AGTAACCAAGGGGTGGTGCA+AGG + chr8_4:54173104-54173123 Msa1333900:CDS 55.0%
GTGGAATGGATCGTGAAGCG+AGG + chr8_4:54173141-54173160 Msa1333900:CDS 55.0%
CCGGCCTTTAATTCTAGGCC+GGG - chr8_4:54173249-54173268 None:intergenic 55.0%
CCCGGCCTAGAATTAAAGGC+CGG + chr8_4:54173246-54173265 Msa1333900:CDS 55.0%
GAACTGCGAGAGGATCAGCA+GGG - chr8_4:54173319-54173338 None:intergenic 55.0%
AAAGTGGGAACGACGCCGTA+TGG - chr8_4:54173365-54173384 None:intergenic 55.0%
TTTGGCGCGGTTGTACGGTA+TGG + chr8_4:54173695-54173714 Msa1333900:three_prime_UTR 55.0%
TTGGCGCGGTTGTACGGTAT+GGG + chr8_4:54173696-54173715 Msa1333900:three_prime_UTR 55.0%
GGCACCCCATCCAATAGGAA+TGG - chr8_4:54173983-54174002 None:intergenic 55.0%
! AGAACGGCAAAAAAGCGCGG+CGG - chr8_4:54172265-54172284 None:intergenic 55.0%
TGCGTCAGCTTTGCACGTGA+CGG - chr8_4:54172400-54172419 None:intergenic 55.0%
!! TGGATTGGCGGAGTGGATGT+CGG - chr8_4:54172448-54172467 None:intergenic 55.0%
TGACCGTAACCGTCGTCAGT+AGG - chr8_4:54172585-54172604 None:intergenic 55.0%
ATGATGCTGAAGCAGCTGCG+TGG + chr8_4:54172607-54172626 Msa1333900:CDS 55.0%
TTCATCATCCGCGCTGGAGT+AGG - chr8_4:54172810-54172829 None:intergenic 55.0%
AGTAACCAAGGGGTGGTGCA+AGG + chr8_4:54173104-54173123 Msa1333900:CDS 55.0%
GTGGAATGGATCGTGAAGCG+AGG + chr8_4:54173141-54173160 Msa1333900:CDS 55.0%
CCGGCCTTTAATTCTAGGCC+GGG - chr8_4:54173249-54173268 None:intergenic 55.0%
CCCGGCCTAGAATTAAAGGC+CGG + chr8_4:54173246-54173265 Msa1333900:CDS 55.0%
GAACTGCGAGAGGATCAGCA+GGG - chr8_4:54173319-54173338 None:intergenic 55.0%
AAAGTGGGAACGACGCCGTA+TGG - chr8_4:54173365-54173384 None:intergenic 55.0%
TTTGGCGCGGTTGTACGGTA+TGG + chr8_4:54173695-54173714 Msa1333900:three_prime_UTR 55.0%
TTGGCGCGGTTGTACGGTAT+GGG + chr8_4:54173696-54173715 Msa1333900:three_prime_UTR 55.0%
GGCACCCCATCCAATAGGAA+TGG - chr8_4:54173983-54174002 None:intergenic 55.0%
! GAACGGCAAAAAAGCGCGGC+GGG - chr8_4:54172264-54172283 None:intergenic 60.0%
! GCTTTGCACGTGACGGAAGC+TGG - chr8_4:54172393-54172412 None:intergenic 60.0%
!! ACGACGAGCGAGTGGATTGG+CGG - chr8_4:54172460-54172479 None:intergenic 60.0%
GTGACGACGAGCGAGTGGAT+TGG - chr8_4:54172463-54172482 None:intergenic 60.0%
GGCGGTGGAGGATTTGACGA+CGG - chr8_4:54172526-54172545 None:intergenic 60.0%
TTGCTCCTTGCACCACCCCT+TGG - chr8_4:54173112-54173131 None:intergenic 60.0%
GGAACTGCGAGAGGATCAGC+AGG - chr8_4:54173320-54173339 None:intergenic 60.0%
TGGCGCGGTTGTACGGTATG+GGG + chr8_4:54173697-54173716 Msa1333900:three_prime_UTR 60.0%
ATGGGGGCAGAGCAAGAGCA+TGG + chr8_4:54173714-54173733 Msa1333900:three_prime_UTR 60.0%
GGAGTGGCACCCCATCCAAT+AGG - chr8_4:54173988-54174007 None:intergenic 60.0%
! GAACGGCAAAAAAGCGCGGC+GGG - chr8_4:54172264-54172283 None:intergenic 60.0%
! GCTTTGCACGTGACGGAAGC+TGG - chr8_4:54172393-54172412 None:intergenic 60.0%
!! ACGACGAGCGAGTGGATTGG+CGG - chr8_4:54172460-54172479 None:intergenic 60.0%
GTGACGACGAGCGAGTGGAT+TGG - chr8_4:54172463-54172482 None:intergenic 60.0%
GGCGGTGGAGGATTTGACGA+CGG - chr8_4:54172526-54172545 None:intergenic 60.0%
TTGCTCCTTGCACCACCCCT+TGG - chr8_4:54173112-54173131 None:intergenic 60.0%
GGAACTGCGAGAGGATCAGC+AGG - chr8_4:54173320-54173339 None:intergenic 60.0%
TGGCGCGGTTGTACGGTATG+GGG + chr8_4:54173697-54173716 Msa1333900:three_prime_UTR 60.0%
ATGGGGGCAGAGCAAGAGCA+TGG + chr8_4:54173714-54173733 Msa1333900:three_prime_UTR 60.0%
GGAGTGGCACCCCATCCAAT+AGG - chr8_4:54173988-54174007 None:intergenic 60.0%
ACATCCAGACGCGCTCGTGG+CGG - chr8_4:54172350-54172369 None:intergenic 65.0%
CACACATCCAGACGCGCTCG+TGG - chr8_4:54172353-54172372 None:intergenic 65.0%
!! GAGCGAGTGGATTGGCGGAG+TGG - chr8_4:54172455-54172474 None:intergenic 65.0%
CGTTCGTGACGACGAGCGAG+TGG - chr8_4:54172468-54172487 None:intergenic 65.0%
GGCGCGGTTGTACGGTATGG+GGG + chr8_4:54173698-54173717 Msa1333900:three_prime_UTR 65.0%
ACATCCAGACGCGCTCGTGG+CGG - chr8_4:54172350-54172369 None:intergenic 65.0%
CACACATCCAGACGCGCTCG+TGG - chr8_4:54172353-54172372 None:intergenic 65.0%
!! GAGCGAGTGGATTGGCGGAG+TGG - chr8_4:54172455-54172474 None:intergenic 65.0%
CGTTCGTGACGACGAGCGAG+TGG - chr8_4:54172468-54172487 None:intergenic 65.0%
GGCGCGGTTGTACGGTATGG+GGG + chr8_4:54173698-54173717 Msa1333900:three_prime_UTR 65.0%
CATCCAGACGCGCTCGTGGC+GGG - chr8_4:54172349-54172368 None:intergenic 70.0%
AGACGCGGCTGCTGCAGCAG+CGG - chr8_4:54172547-54172566 None:intergenic 70.0%
CATCCAGACGCGCTCGTGGC+GGG - chr8_4:54172349-54172368 None:intergenic 70.0%
AGACGCGGCTGCTGCAGCAG+CGG - chr8_4:54172547-54172566 None:intergenic 70.0%
CTTCCCGCCACGAGCGCGTC+TGG + chr8_4:54172343-54172362 Msa1333900:CDS 75.0%
TGCTGCAGCAGCGGCGGTGG+AGG - chr8_4:54172538-54172557 None:intergenic 75.0%
CTTCCCGCCACGAGCGCGTC+TGG + chr8_4:54172343-54172362 Msa1333900:CDS 75.0%
TGCTGCAGCAGCGGCGGTGG+AGG - chr8_4:54172538-54172557 None:intergenic 75.0%
! GGCTGCTGCAGCAGCGGCGG+TGG - chr8_4:54172541-54172560 None:intergenic 80.0%
! CGCGGCTGCTGCAGCAGCGG+CGG - chr8_4:54172544-54172563 None:intergenic 80.0%
! GGCTGCTGCAGCAGCGGCGG+TGG - chr8_4:54172541-54172560 None:intergenic 80.0%
! CGCGGCTGCTGCAGCAGCGG+CGG - chr8_4:54172544-54172563 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 54171992 54174089 54171992 ID=Msa1333900;Name=Msa1333900
chr8_4 mRNA 54171992 54174089 54171992 ID=Msa1333900-mRNA-1;Parent=Msa1333900;Name=Msa1333900-mRNA-1;_AED=0.02;_eAED=0.02;_QI=185|1|1|1|1|1|2|701|376
chr8_4 exon 54171992 54172917 54171992 ID=Msa1333900-mRNA-1:exon:16774;Parent=Msa1333900-mRNA-1
chr8_4 exon 54172999 54174089 54172999 ID=Msa1333900-mRNA-1:exon:16775;Parent=Msa1333900-mRNA-1
chr8_4 five_prime_UTR 54171992 54172176 54171992 ID=Msa1333900-mRNA-1:five_prime_utr;Parent=Msa1333900-mRNA-1
chr8_4 CDS 54172177 54172917 54172177 ID=Msa1333900-mRNA-1:cds;Parent=Msa1333900-mRNA-1
chr8_4 CDS 54172999 54173388 54172999 ID=Msa1333900-mRNA-1:cds;Parent=Msa1333900-mRNA-1
chr8_4 three_prime_UTR 54173389 54174089 54173389 ID=Msa1333900-mRNA-1:three_prime_utr;Parent=Msa1333900-mRNA-1
Gene Sequence

>Msa1333900

ATGGGTATTGAAAGAGGAGGACTAAAGAGTTTTCGAAGCGGCTGGAGTGTGCCACCTAAGCTATGTGATTCTTGCAAGCTTACTCCCGCCGCGCTTTTTTGCCGTTCTGATTCTGCATTTCTATGCATCAACTGTGATTCCACCATTCACTCTGCTAACAAACTCTCTTCCCGCCACGAGCGCGTCTGGATGTGTGAAGTTTGTGAACAAGCACCAGCTTCCGTCACGTGCAAAGCTGACGCAGCTGCTCTATGCGTCACGTGCGATTCCGACATCCACTCCGCCAATCCACTCGCTCGTCGTCACGAACGTGTTCCCGTCGAGCCTTTCTTTGACTCCGCTGAATCCGTCGTCAAATCCTCCACCGCCGCTGCTGCAGCAGCCGCGTCTTTCAATTTCGTTGTTCCTACTGACGACGGTTACGGTCAAGATGATGCTGAAGCAGCTGCGTGGCTGATTCCGAATCCTAATTTCGGATCCAAACTCAATGAAACTCAAGATATCAAAACTAGAGAGATGTTCTTCTCTGATATGGATCCATTTCTTGATTTTGATTACTCAAACAATTTCCAGAACAATATTAACTGCAGCAACGCCATGAACGATAGCGTTGTTCCTGTTCAAACTAAACCTACTCCAGCGCGGATGATGAATCATAACTCAGAAGGTTGCTTTGACATTGATTTTTGCAGATCGAAGCTATCTTCCTTTAACTATCCATCACATTCCATTAGCCATAGCGTTTCGTCATCTTCACTTGACGTAGGAGTGGTGCCAGATGCAAACACGGTGTCAGAGATATCATACAATTTTGGATCGGAATCGATGGTTTCAGGGGGTGTGAATAGTAACCAAGGGGTGGTGCAAGGAGCAACACAATTATGTGGAATGGATCGTGAAGCGAGGGTTATGAGGTACAGAGAGAAGAGGAAGAACCGAAAATTCGAGAAGACTATTCGTTATGCTTCGCGAAAAGCTTATGCAGAAACCCGGCCTAGAATTAAAGGCCGGTTCGCTAAACGAACCGAAATTGACTCGGATGTGGACCGTCTCTATAACCCTGCTGATCCTCTCGCAGTTCCTTCATCTATGCTAATGGACTGTCCATACGGCGTCGTTCCCACTTTTTAG
Protein sequence

>Msa1333900

MGIERGGLKSFRSGWSVPPKLCDSCKLTPAALFCRSDSAFLCINCDSTIHSANKLSSRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSAESVVKSSTAAAAAAASFNFVVPTDDGYGQDDAEAAAWLIPNPNFGSKLNETQDIKTREMFFSDMDPFLDFDYSNNFQNNINCSNAMNDSVVPVQTKPTPARMMNHNSEGCFDIDFCRSKLSSFNYPSHSISHSVSSSSLDVGVVPDANTVSEISYNFGSESMVSGGVNSNQGVVQGATQLCGMDREARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVDRLYNPADPLAVPSSMLMDCPYGVVPTF*