AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1264300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1264300 MtrunA17_Chr4g0074071 98.879 446 5 0 1 446 1 446 0.0 919
Msa1264300 MtrunA17_Chr2g0305881 66.055 218 66 5 1 215 1 213 6.71e-96 287
Msa1264300 MtrunA17_Chr2g0305861 83.969 131 21 0 316 446 1 131 4.46e-80 243
Msa1264300 MtrunA17_Chr2g0305871 73.077 104 28 0 216 319 6 109 8.48e-52 171
Msa1264300 MtrunA17_Chr5g0430241 27.812 320 215 9 90 397 30 345 5.90e-30 120
Msa1264300 MtrunA17_Chr7g0242601 27.885 312 209 8 97 397 93 399 2.23e-29 119
Msa1264300 MtrunA17_Chr4g0006241 28.882 322 203 11 93 397 81 393 5.46e-29 118
Msa1264300 MtrunA17_Chr3g0105171 30.682 264 162 8 148 397 80 336 3.64e-24 103
Msa1264300 MtrunA17_Chr1g0175301 23.642 313 215 6 105 394 33 344 1.54e-19 90.1
Msa1264300 MtrunA17_Chr7g0258651 23.913 322 219 9 91 394 31 344 1.59e-17 84.0
Msa1264300 MtrunA17_Chr1g0210511 24.569 232 157 5 179 394 10 239 3.84e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1264300 AT4G30950.1 72.197 446 123 1 1 445 1 446 0.0 684
Msa1264300 AT3G11170.1 27.027 370 243 12 69 423 66 423 1.39e-28 117
Msa1264300 AT5G05580.1 28.070 342 222 11 97 423 84 416 4.86e-28 115
Msa1264300 AT2G29980.1 27.526 287 193 7 148 423 79 361 2.15e-27 113
Msa1264300 AT5G05580.2 28.664 307 195 11 97 388 84 381 4.26e-26 109
Msa1264300 AT3G12120.1 27.027 259 171 6 152 394 87 343 1.06e-20 94.0
Msa1264300 AT3G12120.2 27.027 259 171 6 152 394 87 343 1.06e-20 94.0
Msa1264300 AT2G29980.2 27.957 186 123 4 148 324 79 262 6.20e-18 84.3

Find 116 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAACTGTAACTTTATTTCT+AGG 0.169896 8_2:-67783498 None:intergenic
AAACTCATTACTCCAATTAA+AGG 0.186093 8_2:+67782872 Msa1264300:CDS
CATGGTTGGGCTATCACTTC+TGG 0.189410 8_2:+67785691 Msa1264300:CDS
TTCAATAGTATTGTTTAATA+TGG 0.198719 8_2:+67788736 Msa1264300:three_prime_UTR
CCAGTCTTGTAAATAATTAA+TGG 0.208810 8_2:-67785636 None:intergenic
CTCGTTAAGTTCACGGTTTA+TGG 0.224294 8_2:+67788803 Msa1264300:three_prime_UTR
ATAAATCCATCCAAGAAAAT+TGG 0.226172 8_2:+67788131 Msa1264300:CDS
TTTGTTGCCTGAACCCTTTA+TGG 0.227035 8_2:-67783458 None:intergenic
AAAGAATGAAAACCTTTAAT+TGG 0.227699 8_2:-67782884 None:intergenic
TGGACAGGGACTGCTGTAAC+TGG 0.230223 8_2:+67784241 Msa1264300:CDS
TTCACCCTCTTTATTTCATT+TGG 0.236235 8_2:-67785570 None:intergenic
ACAGGCTTATTTAGCCTAAA+AGG 0.252843 8_2:+67783423 Msa1264300:intron
GCTGCACAAGCACAGCTTAA+TGG 0.258653 8_2:+67787340 Msa1264300:CDS
GGGATATATGGTGTGGAATA+TGG 0.265223 8_2:-67788075 None:intergenic
TTGAGGAAAGCAATAATATA+TGG 0.266288 8_2:+67785344 Msa1264300:CDS
ATAAGAAAATCCACCTTCTT+AGG 0.267567 8_2:-67783663 None:intergenic
CTAATTGGACGAGATTCTTT+AGG 0.270288 8_2:-67788595 None:intergenic
GCCCCACAGTTCTTTGTTAT+AGG 0.274592 8_2:+67784396 Msa1264300:intron
TACTTCCTCTGGCTTGGGCT+TGG 0.300422 8_2:+67784221 Msa1264300:CDS
ATGCCTGATTATGCCTAATT+AGG 0.301317 8_2:+67788634 Msa1264300:exon
TTTGTTCTCAAATTCAAAAC+TGG 0.304706 8_2:-67782999 None:intergenic
TGGCCATCCAATTGCTATAA+AGG 0.318227 8_2:-67785616 None:intergenic
AAATGACAGTACACATTATT+AGG 0.321172 8_2:-67789007 None:intergenic
TGGATAAATTAGTGGCAAAA+AGG 0.327260 8_2:-67784484 None:intergenic
TATCGATCTGCGTCCACATT+TGG 0.337003 8_2:+67782712 None:intergenic
TAAATCCATCCAAGAAAATT+GGG 0.338050 8_2:+67788132 Msa1264300:CDS
AAGCCAACTTGGACCTAATT+AGG 0.340638 8_2:-67788647 None:intergenic
TCATGGGATGGATAAAATTC+TGG 0.348865 8_2:+67785661 Msa1264300:CDS
CCTCTGGCTTGGGCTTGGAC+AGG 0.352571 8_2:+67784226 Msa1264300:CDS
ATCTGCCACTTCCTATGCGC+TGG 0.359174 8_2:+67784165 Msa1264300:CDS
TATACGAGCTGTGGCAATTC+CGG 0.360109 8_2:+67783518 Msa1264300:CDS
GGTGATGGGTTAATCCATAA+AGG 0.366623 8_2:+67783444 Msa1264300:CDS
GTATCTACTTCCTCTGGCTT+GGG 0.367325 8_2:+67784216 Msa1264300:CDS
GGTATCTACTTCCTCTGGCT+TGG 0.369690 8_2:+67784215 Msa1264300:CDS
AGTTTATCTTTCAGAGAGAC+TGG 0.373400 8_2:+67782782 Msa1264300:five_prime_UTR
AAAGAGGGTGAAGATAAGTT+TGG 0.373712 8_2:+67785581 Msa1264300:CDS
ATACTGCTTGGCAGCCTGTT+TGG 0.377429 8_2:+67785294 Msa1264300:CDS
GATATGGTCCATTTCGTTGC+TGG 0.383059 8_2:+67785366 Msa1264300:CDS
TTCATTGTGCTTACCCTCAA+TGG 0.394646 8_2:+67787368 Msa1264300:CDS
CTCTGGCTTGGGCTTGGACA+GGG 0.396821 8_2:+67784227 Msa1264300:CDS
TCAAACTCATCCTGCCAAAC+AGG 0.398783 8_2:-67785308 None:intergenic
CCATTAATTATTTACAAGAC+TGG 0.404814 8_2:+67785636 Msa1264300:CDS
TATTTACAAGACTGGAATCA+TGG 0.410988 8_2:+67785644 Msa1264300:CDS
CATAACAAGGGGAAATTACT+TGG 0.411596 8_2:+67788776 Msa1264300:three_prime_UTR
ATGGTTGGGCTATCACTTCT+GGG 0.416170 8_2:+67785692 Msa1264300:CDS
TGCTTGGCAGCCTGTTTGGC+AGG 0.421716 8_2:+67785298 Msa1264300:CDS
CGATCTGCGTCCACATTTGG+AGG 0.427034 8_2:+67782715 None:intergenic
TTAAATCGCCATGGCTCATA+TGG 0.429770 8_2:-67784504 None:intergenic
GGACCTAATTAGGCATAATC+AGG 0.437567 8_2:-67788637 None:intergenic
CTGTACTCCGCACTTTCCAC+TGG 0.440501 8_2:-67783552 None:intergenic
TCCGCACTTTCCACTGGAGC+TGG 0.444789 8_2:-67783546 None:intergenic
TGGAGCTCTCGTTAAGTTCA+CGG 0.447567 8_2:+67788796 Msa1264300:three_prime_UTR
TGAATGAGGCTAGTTGGAAT+TGG 0.451740 8_2:+67788494 Msa1264300:CDS
GGTTAATCCATAAAGGGTTC+AGG 0.453241 8_2:+67783451 Msa1264300:CDS
CATTACTTCTCTTCCTAAGA+AGG 0.455511 8_2:+67783650 Msa1264300:CDS
TCAAATTCAAAACTGGCCTC+TGG 0.458016 8_2:-67782992 None:intergenic
TCTGCCACTTCCTATGCGCT+GGG 0.465046 8_2:+67784166 Msa1264300:CDS
GGCTCATATGGATAAATTAG+TGG 0.465890 8_2:-67784492 None:intergenic
ATAGACATCCAGCAACGAAA+TGG 0.467653 8_2:-67785374 None:intergenic
TCCACTGGAGCTGGTTCTAC+CGG 0.468139 8_2:-67783537 None:intergenic
AAAGCAATAATATATGGATA+TGG 0.470604 8_2:+67785350 Msa1264300:CDS
AGTATCTGAATGAGGCTAGT+TGG 0.473014 8_2:+67788488 Msa1264300:intron
GGACAGGGACTGCTGTAACT+GGG 0.473850 8_2:+67784242 Msa1264300:CDS
GAATATGGACATTAATATCA+TGG 0.492331 8_2:-67788060 None:intergenic
AAGCCCCAGCGCATAGGAAG+TGG 0.495190 8_2:-67784170 None:intergenic
GTGATGGGTTAATCCATAAA+GGG 0.495739 8_2:+67783445 Msa1264300:CDS
AATGTAACATTGTCTGGAAG+CGG 0.499209 8_2:-67783618 None:intergenic
TGCATGAAAATAAGCCAACT+TGG 0.501498 8_2:-67788658 None:intergenic
TTCTGGTTGATGCCATGGTT+GGG 0.509958 8_2:+67785678 Msa1264300:CDS
GCCCTGGTATCTACTTCCTC+TGG 0.511022 8_2:+67784210 Msa1264300:CDS
AGAAGACATTGTTGGAACTC+TGG 0.511878 8_2:+67784461 Msa1264300:CDS
GACAGGGACTGCTGTAACTG+GGG 0.512837 8_2:+67784243 Msa1264300:CDS
TTATTTAGCCTAAAAGGTGA+TGG 0.518579 8_2:+67783429 Msa1264300:CDS
ATGCCTAATTAGGTCCAAGT+TGG 0.519972 8_2:+67788644 Msa1264300:exon
TTAGACCAAATGAAATAAAG+AGG 0.524360 8_2:+67785565 Msa1264300:CDS
GAGAGAGACTTGTTTGGTGT+GGG 0.525054 8_2:-67782740 None:intergenic
AGAGAGAGACTTGTTTGGTG+TGG 0.525514 8_2:-67782741 None:intergenic
AGCTCTGAGAGACATTCATT+AGG 0.527304 8_2:+67788843 Msa1264300:three_prime_UTR
AGCCAGAGGAAGTAGATACC+AGG 0.530649 8_2:-67784212 None:intergenic
TTTAGGAGCAACTTCATCAA+AGG 0.532877 8_2:-67788578 None:intergenic
TATTTAGCCTAAAAGGTGAT+GGG 0.537194 8_2:+67783430 Msa1264300:CDS
ATTCTGGTTGATGCCATGGT+TGG 0.540405 8_2:+67785677 Msa1264300:CDS
TGCAGGGTTCTTCATTCCAG+AGG 0.540431 8_2:+67782976 Msa1264300:intron
CATAAGAAGCCCCAGCGCAT+AGG 0.540899 8_2:-67784176 None:intergenic
TCGCCTTTATAGCAATTGGA+TGG 0.555332 8_2:+67785613 Msa1264300:CDS
ATTTACAAGACTGGAATCAT+GGG 0.557510 8_2:+67785645 Msa1264300:CDS
GTTTATCTTTCAGAGAGACT+GGG 0.564829 8_2:+67782783 Msa1264300:five_prime_UTR
TTATGATTTCTAAAGCGCCC+TGG 0.568345 8_2:+67784194 Msa1264300:CDS
TAAAATTCTGGTTGATGCCA+TGG 0.571569 8_2:+67785673 Msa1264300:CDS
GATCTGCGTCCACATTTGGA+GGG 0.574640 8_2:+67782716 Msa1264300:five_prime_UTR
ATTTCTGCTCATTACTCACC+TGG 0.575772 8_2:+67783023 Msa1264300:CDS
TCCGGTAGAACCAGCTCCAG+TGG 0.580163 8_2:+67783536 Msa1264300:CDS
GCTGGATGTCTATAGCTCAC+TGG 0.582755 8_2:+67785384 Msa1264300:CDS
AAATTGGTAGAAGACATTGT+TGG 0.585428 8_2:+67784453 Msa1264300:CDS
ATCTGCGTCCACATTTGGAG+GGG 0.586870 8_2:+67782717 Msa1264300:five_prime_UTR
CATCCAAGAAAATTGGGGAA+AGG 0.590847 8_2:+67788138 Msa1264300:CDS
TAATTTATCCATATGAGCCA+TGG 0.590928 8_2:+67784496 Msa1264300:CDS
GCCAGAGGAAGTAGATACCA+GGG 0.594327 8_2:-67784211 None:intergenic
GCTGCTCGTAAATTATAGCT+TGG 0.594700 8_2:-67788106 None:intergenic
GGTTGAAAGAAGATACTGCT+TGG 0.603426 8_2:+67785282 Msa1264300:intron
TTGTCATGCTTAAATCGCCA+TGG 0.610770 8_2:-67784513 None:intergenic
ATGCATAAACAGATGTCTAA+CGG 0.613102 8_2:+67788938 Msa1264300:three_prime_UTR
AGATTGATGATGTTAAAGCA+TGG 0.613392 8_2:+67784128 Msa1264300:CDS
TAGACCAAATGAAATAAAGA+GGG 0.614606 8_2:+67785566 Msa1264300:CDS
TTGGAGTAATGAGTTTGCAG+AGG 0.616285 8_2:-67782865 None:intergenic
AAACAGCTAGCAGAACGCTA+TGG 0.617716 8_2:+67783576 Msa1264300:CDS
GGTGTGGGCCCCTCCAAATG+TGG 0.623715 8_2:-67782725 None:intergenic
AGTTACAGTTATACGAGCTG+TGG 0.623877 8_2:+67783509 Msa1264300:CDS
CCTGTCCAAGCCCAAGCCAG+AGG 0.628134 8_2:-67784226 None:intergenic
ACCAGCTCCAGTGGAAAGTG+CGG 0.631323 8_2:+67783545 Msa1264300:CDS
AAATCCATCCAAGAAAATTG+GGG 0.635467 8_2:+67788133 Msa1264300:CDS
CAGAAGTGATAGCCCAACCA+TGG 0.650623 8_2:-67785690 None:intergenic
ATAGATGAGCACTTTCACCA+TGG 0.653236 8_2:+67787267 Msa1264300:intron
CTGCCACTTCCTATGCGCTG+GGG 0.655654 8_2:+67784167 Msa1264300:CDS
ACAAGACTGGAATCATGGGA+TGG 0.658676 8_2:+67785649 Msa1264300:CDS
TGGTGCAGTATGATGTACCA+TGG 0.715874 8_2:-67787284 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATAATTATTTTATTAA+AGG + chr8_2:67786937-67786956 Msa1264300:intron 0.0%
!! ATGAAAAATCATTATTTAAA+AGG - chr8_2:67783393-67783412 None:intergenic 10.0%
!!! TAATCATTTTAAATTTTTGA+AGG + chr8_2:67784099-67784118 Msa1264300:intron 10.0%
!! CTGAAATATATATTAATAAT+GGG - chr8_2:67784706-67784725 None:intergenic 10.0%
!! ACTGAAATATATATTAATAA+TGG - chr8_2:67784707-67784726 None:intergenic 10.0%
!!! ATTCATTTTAAAGATAAAAA+TGG + chr8_2:67786606-67786625 Msa1264300:intron 10.0%
!!! TAGAAAGTTTTTAAAAAAAA+AGG - chr8_2:67787111-67787130 None:intergenic 10.0%
!!! AAAGATAAACTCTTTTTATT+TGG - chr8_2:67782773-67782792 None:intergenic 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG + chr8_2:67783327-67783346 Msa1264300:intron 15.0%
!! AGAAAAACAAAAAAATAGAA+GGG - chr8_2:67784572-67784591 None:intergenic 15.0%
!! TAGAAAAACAAAAAAATAGA+AGG - chr8_2:67784573-67784592 None:intergenic 15.0%
!!! TTCTATTTTTTTGTTTTTCT+AGG + chr8_2:67784572-67784591 Msa1264300:intron 15.0%
!! TAAAAAAAAGATGAATTCAA+AGG + chr8_2:67784899-67784918 Msa1264300:intron 15.0%
!! AAATAAAAACAAAAAAGACA+CGG - chr8_2:67785757-67785776 None:intergenic 15.0%
!!! TTGTTTTTATTTCTTTTGTT+TGG + chr8_2:67785765-67785784 Msa1264300:intron 15.0%
!! ACAATCTTATATTAAAAGAA+TGG + chr8_2:67785956-67785975 Msa1264300:intron 15.0%
!! TAAAAAAAATCAATGAAGAT+AGG - chr8_2:67786727-67786746 None:intergenic 15.0%
!!! TTTTACATTCGTTTAATAAT+AGG + chr8_2:67786742-67786761 Msa1264300:intron 15.0%
!! ACTACACAATTTATTAATTA+TGG + chr8_2:67786886-67786905 Msa1264300:intron 15.0%
!! TTATGGATAAATATAACATT+AGG + chr8_2:67786903-67786922 Msa1264300:intron 15.0%
!!! TTTTTTTAAAAACTTTCTAG+AGG + chr8_2:67787112-67787131 Msa1264300:intron 15.0%
!! TTCAATAGTATTGTTTAATA+TGG + chr8_2:67788736-67788755 Msa1264300:three_prime_UTR 15.0%
!! AAAGAATGAAAACCTTTAAT+TGG - chr8_2:67782887-67782906 None:intergenic 20.0%
!! GTATTTATTTAAGAGTTGAA+AGG - chr8_2:67782921-67782940 None:intergenic 20.0%
!!! CAAAATATCTTAGCTTTATA+CGG + chr8_2:67782940-67782959 Msa1264300:intron 20.0%
!! GCAAAATAGTAAAGTAATTA+AGG - chr8_2:67783064-67783083 None:intergenic 20.0%
!!! ATAACTGTAACTTTATTTCT+AGG - chr8_2:67783501-67783520 None:intergenic 20.0%
!!! ATCATTAAGTTTTAGAACAT+AGG + chr8_2:67783719-67783738 Msa1264300:intron 20.0%
!!! TCATTAAGTTTTAGAACATA+GGG + chr8_2:67783720-67783739 Msa1264300:intron 20.0%
!!! GTAATTTTTTGCCAAAAATA+TGG - chr8_2:67783992-67784011 None:intergenic 20.0%
!!! ATCATTTTCAACAAACAAAT+TGG + chr8_2:67784437-67784456 Msa1264300:CDS 20.0%
!!! TATATTAATAATGGGTTTTC+AGG - chr8_2:67784698-67784717 None:intergenic 20.0%
!! AAAGCAATAATATATGGATA+TGG + chr8_2:67785350-67785369 Msa1264300:CDS 20.0%
!! AACAATATAAAAACGTTTCA+AGG - chr8_2:67785415-67785434 None:intergenic 20.0%
!!! TTTTATTTCTTTTGTTTGGA+TGG + chr8_2:67785769-67785788 Msa1264300:intron 20.0%
!! TTTATGTATTGAAGTAGAAT+TGG + chr8_2:67785889-67785908 Msa1264300:intron 20.0%
!! ACTATATATACATTAAAGCT+CGG - chr8_2:67785928-67785947 None:intergenic 20.0%
!! TTTAATATAAGATTGTGAGT+GGG - chr8_2:67785952-67785971 None:intergenic 20.0%
!!! TTTTAATATAAGATTGTGAG+TGG - chr8_2:67785953-67785972 None:intergenic 20.0%
!!! TTTTAACCTACTATAAGATA+TGG - chr8_2:67786233-67786252 None:intergenic 20.0%
!!! ACTTTATATTTTTACTCTGT+TGG + chr8_2:67786848-67786867 Msa1264300:intron 20.0%
!! TAACCTGATAATATATTTAG+AGG - chr8_2:67787015-67787034 None:intergenic 20.0%
!!! ACAGTCTAAATATTTTTTTG+GGG - chr8_2:67787172-67787191 None:intergenic 20.0%
!!! CACAGTCTAAATATTTTTTT+GGG - chr8_2:67787173-67787192 None:intergenic 20.0%
!!! ACACAGTCTAAATATTTTTT+TGG - chr8_2:67787174-67787193 None:intergenic 20.0%
!! AAAAAATACATTACCATTGA+GGG - chr8_2:67787384-67787403 None:intergenic 20.0%
!! TAAAATATGATCAGAGAAAA+TGG + chr8_2:67787622-67787641 Msa1264300:intron 20.0%
!! TAAGCATTAAAACATTTCTA+AGG - chr8_2:67787800-67787819 None:intergenic 20.0%
!! TCTTTCACAAATGTAATATA+AGG - chr8_2:67787880-67787899 None:intergenic 20.0%
!!! AAATTATAGCTTGGTATTTT+CGG - chr8_2:67788100-67788119 None:intergenic 20.0%
!!! TTATATCGAAAAGTATGTTT+TGG - chr8_2:67788291-67788310 None:intergenic 20.0%
!!! AAACTTTCAAATCTTTTATC+TGG - chr8_2:67788316-67788335 None:intergenic 20.0%
!!! ATGACATTTTAGCTAATTAT+TGG + chr8_2:67788440-67788459 Msa1264300:intron 20.0%
!! ACTTTCTTCAAAAATCTAAT+TGG - chr8_2:67788613-67788632 None:intergenic 20.0%
!! TTGTTATGTGATATGAAAAA+TGG - chr8_2:67788764-67788783 None:intergenic 20.0%
!!! ATTTTTCATATCACATAACA+AGG + chr8_2:67788763-67788782 Msa1264300:three_prime_UTR 20.0%
!!! TTTTTCATATCACATAACAA+GGG + chr8_2:67788764-67788783 Msa1264300:three_prime_UTR 20.0%
! CTCAATTTCATCTCAAAAAA+TGG + chr8_2:67782836-67782855 Msa1264300:exon 25.0%
! AAACTCATTACTCCAATTAA+AGG + chr8_2:67782872-67782891 Msa1264300:CDS 25.0%
! TTTGTTCTCAAATTCAAAAC+TGG - chr8_2:67783002-67783021 None:intergenic 25.0%
! GCAATTATGTATGAATGATA+TGG + chr8_2:67783221-67783240 Msa1264300:intron 25.0%
! TTTGAGAAAATGACATAACT+CGG - chr8_2:67783320-67783339 None:intergenic 25.0%
!! TCTTTTAATGTAACATTGTC+TGG - chr8_2:67783627-67783646 None:intergenic 25.0%
! AAAGTGAGAAAAAACAAGAA+TGG - chr8_2:67783969-67783988 None:intergenic 25.0%
!! TTTCTCACTTTCCATATTTT+TGG + chr8_2:67783978-67783997 Msa1264300:intron 25.0%
! ATTATTACAAAAAGGAAGAC+AGG - chr8_2:67784034-67784053 None:intergenic 25.0%
!! TCCTTTTTGTAATAATTCCA+TGG + chr8_2:67784038-67784057 Msa1264300:intron 25.0%
! ACCATGGAATTATTACAAAA+AGG - chr8_2:67784042-67784061 None:intergenic 25.0%
! ATATTTCAGTAGCTTAATCA+AGG + chr8_2:67784717-67784736 Msa1264300:intron 25.0%
! TATTTCAGTAGCTTAATCAA+GGG + chr8_2:67784718-67784737 Msa1264300:intron 25.0%
! TAAATCATCTCTAATGATAC+AGG + chr8_2:67785261-67785280 Msa1264300:intron 25.0%
! ATTATTGCTTTCCTCAAAAA+TGG - chr8_2:67785341-67785360 None:intergenic 25.0%
! TTGAGGAAAGCAATAATATA+TGG + chr8_2:67785344-67785363 Msa1264300:CDS 25.0%
!! ACGTTTTTATATTGTTCCTA+AGG + chr8_2:67785419-67785438 Msa1264300:intron 25.0%
! AAGTTAATGAAATAGTCCTT+AGG - chr8_2:67785438-67785457 None:intergenic 25.0%
!!! AATTAGTTTGCATCAAGATA+CGG - chr8_2:67785508-67785527 None:intergenic 25.0%
! TTAGACCAAATGAAATAAAG+AGG + chr8_2:67785565-67785584 Msa1264300:CDS 25.0%
! TAGACCAAATGAAATAAAGA+GGG + chr8_2:67785566-67785585 Msa1264300:CDS 25.0%
!! CCAGTCTTGTAAATAATTAA+TGG - chr8_2:67785639-67785658 None:intergenic 25.0%
! CCATTAATTATTTACAAGAC+TGG + chr8_2:67785636-67785655 Msa1264300:CDS 25.0%
! ATAAACTACGTGTAATATAG+TGG - chr8_2:67786102-67786121 None:intergenic 25.0%
! CAACAAATTTAGTGACTTAA+GGG - chr8_2:67786146-67786165 None:intergenic 25.0%
! TCAACAAATTTAGTGACTTA+AGG - chr8_2:67786147-67786166 None:intergenic 25.0%
! AAGAGATATTTAGAGGTAAA+TGG - chr8_2:67786262-67786281 None:intergenic 25.0%
! GACTATTAAGAGATATTTAG+AGG - chr8_2:67786269-67786288 None:intergenic 25.0%
! CTAAATATCTCTTAATAGTC+TGG + chr8_2:67786269-67786288 Msa1264300:intron 25.0%
! CCACTATAGAAAAAGATAAT+AGG - chr8_2:67786419-67786438 None:intergenic 25.0%
!! CCTATTATCTTTTTCTATAG+TGG + chr8_2:67786416-67786435 Msa1264300:intron 25.0%
! TTCAAGTATTAAACAACTCA+AGG + chr8_2:67786645-67786664 Msa1264300:intron 25.0%
!! AAGTGTAAAATAAAGTGTCT+TGG + chr8_2:67786960-67786979 Msa1264300:intron 25.0%
! TTACATGAATGCTTTCAAAT+TGG - chr8_2:67786986-67787005 None:intergenic 25.0%
! AAGCCTCTAAATATATTATC+AGG + chr8_2:67787009-67787028 Msa1264300:intron 25.0%
!!! AGTCTAAATATTTTTTTGGG+GGG - chr8_2:67787170-67787189 None:intergenic 25.0%
!!! CAGTCTAAATATTTTTTTGG+GGG - chr8_2:67787171-67787190 None:intergenic 25.0%
! TCATGATGTAATTAATACTG+TGG + chr8_2:67787208-67787227 Msa1264300:intron 25.0%
! CATGATGTAATTAATACTGT+GGG + chr8_2:67787209-67787228 Msa1264300:intron 25.0%
! GAAAAAATACATTACCATTG+AGG - chr8_2:67787385-67787404 None:intergenic 25.0%
!! ATTTTTCTTTCATTGCTCTT+TGG + chr8_2:67787494-67787513 Msa1264300:intron 25.0%
!!! ATGAGTGTTATTTTATTCTG+TGG + chr8_2:67787519-67787538 Msa1264300:intron 25.0%
!! TTTGTCCTTTTTCCTTAATA+CGG - chr8_2:67787593-67787612 None:intergenic 25.0%
! ACATACAAATCCATAATTGA+CGG + chr8_2:67787735-67787754 Msa1264300:intron 25.0%
! ACTTAAAGTTAACAATTCAC+AGG - chr8_2:67787853-67787872 None:intergenic 25.0%
! GAATATGGACATTAATATCA+TGG - chr8_2:67788063-67788082 None:intergenic 25.0%
!! AATTATAGCTTGGTATTTTC+GGG - chr8_2:67788099-67788118 None:intergenic 25.0%
!!! ATTTTCTTGGATGGATTTAT+GGG - chr8_2:67788131-67788150 None:intergenic 25.0%
!!! AATTTTCTTGGATGGATTTA+TGG - chr8_2:67788132-67788151 None:intergenic 25.0%
! ATAAATCCATCCAAGAAAAT+TGG + chr8_2:67788131-67788150 Msa1264300:CDS 25.0%
! TAAATCCATCCAAGAAAATT+GGG + chr8_2:67788132-67788151 Msa1264300:CDS 25.0%
! TAATATAAGACTGCAAAAAG+TGG - chr8_2:67788227-67788246 None:intergenic 25.0%
!!! TCATCTAGAAATTTTAACCA+TGG - chr8_2:67788424-67788443 None:intergenic 25.0%
!!! TTGGTATTATTTTGTTGTGT+TGG + chr8_2:67788459-67788478 Msa1264300:intron 25.0%
!! TTTTATGTATCAGAGTAGTT+AGG + chr8_2:67788686-67788705 Msa1264300:three_prime_UTR 25.0%
!! TTTTCATATCACATAACAAG+GGG + chr8_2:67788765-67788784 Msa1264300:three_prime_UTR 25.0%
! AAATGACAGTACACATTATT+AGG - chr8_2:67789010-67789029 None:intergenic 25.0%
! TTTTTCATTCTTTGTGTCAC+AGG + chr8_2:67783405-67783424 Msa1264300:intron 30.0%
TTATTTAGCCTAAAAGGTGA+TGG + chr8_2:67783429-67783448 Msa1264300:CDS 30.0%
TATTTAGCCTAAAAGGTGAT+GGG + chr8_2:67783430-67783449 Msa1264300:CDS 30.0%
ATAAGAAAATCCACCTTCTT+AGG - chr8_2:67783666-67783685 None:intergenic 30.0%
TTCTCCTAAATAACACTTTC+TGG + chr8_2:67783776-67783795 Msa1264300:intron 30.0%
ATGTACACAACTATGCTATA+AGG - chr8_2:67783840-67783859 None:intergenic 30.0%
TACATGATTATTCTGTCTCT+AGG + chr8_2:67783943-67783962 Msa1264300:intron 30.0%
ATTACACTAACCAAACAGAA+AGG + chr8_2:67784007-67784026 Msa1264300:intron 30.0%
AAAATGAAATCTGAACACCA+TGG - chr8_2:67784058-67784077 None:intergenic 30.0%
!! AGATTGATGATGTTAAAGCA+TGG + chr8_2:67784128-67784147 Msa1264300:CDS 30.0%
AGCAGTAACGAGTAATTATA+AGG - chr8_2:67784288-67784307 None:intergenic 30.0%
AAGATCTTGGACATATGATT+TGG + chr8_2:67784343-67784362 Msa1264300:intron 30.0%
AGATCTTGGACATATGATTT+GGG + chr8_2:67784344-67784363 Msa1264300:intron 30.0%
AAATTGGTAGAAGACATTGT+TGG + chr8_2:67784453-67784472 Msa1264300:CDS 30.0%
TGGATAAATTAGTGGCAAAA+AGG - chr8_2:67784487-67784506 None:intergenic 30.0%
TAATTTATCCATATGAGCCA+TGG + chr8_2:67784496-67784515 Msa1264300:CDS 30.0%
TGCAAAAACAAACATGTAAG+TGG + chr8_2:67784542-67784561 Msa1264300:intron 30.0%
AATGTATGTTATAGACAGAC+TGG + chr8_2:67784621-67784640 Msa1264300:intron 30.0%
GAGTTATATCAAGTACACAT+TGG - chr8_2:67784844-67784863 None:intergenic 30.0%
CTTGATATAACTCGCAAATT+AGG + chr8_2:67784851-67784870 Msa1264300:intron 30.0%
TCATTTATGCATTTGTTCCT+AGG - chr8_2:67784964-67784983 None:intergenic 30.0%
CATGTGATTCTGATATATGA+GGG - chr8_2:67785007-67785026 None:intergenic 30.0%
GATGCAAACTAATTTCTTTC+AGG + chr8_2:67785514-67785533 Msa1264300:intron 30.0%
! CAAACTAATTTCTTTCAGGT+TGG + chr8_2:67785518-67785537 Msa1264300:intron 30.0%
! TTCACCCTCTTTATTTCATT+TGG - chr8_2:67785573-67785592 None:intergenic 30.0%
TATTTACAAGACTGGAATCA+TGG + chr8_2:67785644-67785663 Msa1264300:CDS 30.0%
ATTTACAAGACTGGAATCAT+GGG + chr8_2:67785645-67785664 Msa1264300:CDS 30.0%
AAAATCCAGTGACTGTTTAT+TGG - chr8_2:67785830-67785849 None:intergenic 30.0%
TTTAAAGAGTAATCAGTCAC+TGG + chr8_2:67785854-67785873 Msa1264300:intron 30.0%
GAACAATATAAAACTATCCC+TGG + chr8_2:67785978-67785997 Msa1264300:intron 30.0%
!! TCATCTTGCTCTAAATTTTC+CGG - chr8_2:67786023-67786042 None:intergenic 30.0%
! GAAAATTTAGAGCAAGATGA+GGG + chr8_2:67786023-67786042 Msa1264300:intron 30.0%
AATTAGAACCATCGTTTGTA+GGG - chr8_2:67786070-67786089 None:intergenic 30.0%
AAATTAGAACCATCGTTTGT+AGG - chr8_2:67786071-67786090 None:intergenic 30.0%
GTGATTCCATATCTTATAGT+AGG + chr8_2:67786224-67786243 Msa1264300:intron 30.0%
AGATAATAGGATACTGTCTT+GGG - chr8_2:67786406-67786425 None:intergenic 30.0%
AAGATAATAGGATACTGTCT+TGG - chr8_2:67786407-67786426 None:intergenic 30.0%
TTATAGTGAAGACAACCTAT+AGG - chr8_2:67786449-67786468 None:intergenic 30.0%
ATGCATTTATAGCAGCTATA+GGG - chr8_2:67786474-67786493 None:intergenic 30.0%
AATGCATTTATAGCAGCTAT+AGG - chr8_2:67786475-67786494 None:intergenic 30.0%
!! AACGGTTTGGTAAAACATAA+AGG - chr8_2:67787045-67787064 None:intergenic 30.0%
! TTATGTTTTACCAAACCGTT+AGG + chr8_2:67787045-67787064 Msa1264300:intron 30.0%
!!! ATTTTTCAGGTACAACCTAA+CGG - chr8_2:67787063-67787082 None:intergenic 30.0%
!! AGCATGATAACGTATTTTTC+AGG - chr8_2:67787076-67787095 None:intergenic 30.0%
!!! TCTAAATATTTTTTTGGGGG+GGG - chr8_2:67787168-67787187 None:intergenic 30.0%
!!! GTCTAAATATTTTTTTGGGG+GGG - chr8_2:67787169-67787188 None:intergenic 30.0%
! CATTCTTCTGAGTTTTTGAA+TGG - chr8_2:67787316-67787335 None:intergenic 30.0%
CATTCAAAAACTCAGAAGAA+TGG + chr8_2:67787314-67787333 Msa1264300:CDS 30.0%
TCGAGAATGTTTACTATCTA+CGG + chr8_2:67787649-67787668 Msa1264300:intron 30.0%
TTTGAAGAAATCATGAGAAG+GGG - chr8_2:67787953-67787972 None:intergenic 30.0%
! CTTTGAAGAAATCATGAGAA+GGG - chr8_2:67787954-67787973 None:intergenic 30.0%
! ACTTTGAAGAAATCATGAGA+AGG - chr8_2:67787955-67787974 None:intergenic 30.0%
! ATATAGCGGTTAGTCAATAT+TGG - chr8_2:67788004-67788023 None:intergenic 30.0%
GAAAAGAAGTCAGAATATAG+CGG - chr8_2:67788018-67788037 None:intergenic 30.0%
! ATTATAGCTTGGTATTTTCG+GGG - chr8_2:67788098-67788117 None:intergenic 30.0%
AAATCCATCCAAGAAAATTG+GGG + chr8_2:67788133-67788152 Msa1264300:CDS 30.0%
TATGCTTCATGAAAGAAATG+AGG + chr8_2:67788187-67788206 Msa1264300:intron 30.0%
!! TATCGAAAAGTATGTTTTGG+TGG - chr8_2:67788288-67788307 None:intergenic 30.0%
CTAACTAAACTCTAATTCCA+TGG + chr8_2:67788404-67788423 Msa1264300:intron 30.0%
GGAAAAATAGTATCTGAATG+AGG + chr8_2:67788480-67788499 Msa1264300:intron 30.0%
! ATCTGAACGTGATTTTTGTT+AGG + chr8_2:67788886-67788905 Msa1264300:three_prime_UTR 30.0%
! TCTGAACGTGATTTTTGTTA+GGG + chr8_2:67788887-67788906 Msa1264300:three_prime_UTR 30.0%
ATGCATAAACAGATGTCTAA+CGG + chr8_2:67788938-67788957 Msa1264300:three_prime_UTR 30.0%
! CTAACGGATAAAAAATCATG+TGG + chr8_2:67788954-67788973 Msa1264300:three_prime_UTR 30.0%
AGTTTATCTTTCAGAGAGAC+TGG + chr8_2:67782782-67782801 Msa1264300:five_prime_UTR 35.0%
GTTTATCTTTCAGAGAGACT+GGG + chr8_2:67782783-67782802 Msa1264300:five_prime_UTR 35.0%
AAGAGTTGAAAGGAATGAGA+GGG - chr8_2:67782911-67782930 None:intergenic 35.0%
TAAGAGTTGAAAGGAATGAG+AGG - chr8_2:67782912-67782931 None:intergenic 35.0%
AGGAAGATGAATAGAATACC+AGG - chr8_2:67783044-67783063 None:intergenic 35.0%
TTCAATTCTTGCTCATCTTG+TGG + chr8_2:67783094-67783113 Msa1264300:intron 35.0%
!! AAAATGACATAACTCGGTGT+CGG - chr8_2:67783314-67783333 None:intergenic 35.0%
TGTCTATGTATGTGCTTCAT+AGG + chr8_2:67783365-67783384 Msa1264300:intron 35.0%
ACAGGCTTATTTAGCCTAAA+AGG + chr8_2:67783423-67783442 Msa1264300:intron 35.0%
!! GTGATGGGTTAATCCATAAA+GGG + chr8_2:67783445-67783464 Msa1264300:CDS 35.0%
AATGTAACATTGTCTGGAAG+CGG - chr8_2:67783621-67783640 None:intergenic 35.0%
CATTACTTCTCTTCCTAAGA+AGG + chr8_2:67783650-67783669 Msa1264300:CDS 35.0%
!! CACACCAGAAAGTGTTATTT+AGG - chr8_2:67783783-67783802 None:intergenic 35.0%
!! TTTCTGGTGTGTTTTCTTCT+TGG + chr8_2:67783792-67783811 Msa1264300:intron 35.0%
! TTCTGGTGTGTTTTCTTCTT+GGG + chr8_2:67783793-67783812 Msa1264300:intron 35.0%
CTTCTTGGGTAAGGATATTA+AGG + chr8_2:67783807-67783826 Msa1264300:intron 35.0%
ATATGTCCAAGATCTTCAAG+AGG - chr8_2:67784339-67784358 None:intergenic 35.0%
TCCTATAACAAAGAACTGTG+GGG - chr8_2:67784400-67784419 None:intergenic 35.0%
GTCCTATAACAAAGAACTGT+GGG - chr8_2:67784401-67784420 None:intergenic 35.0%
TGTCCTATAACAAAGAACTG+TGG - chr8_2:67784402-67784421 None:intergenic 35.0%
GGCTCATATGGATAAATTAG+TGG - chr8_2:67784495-67784514 None:intergenic 35.0%
AATGCATGAAGTGTGAAACT+TGG + chr8_2:67784659-67784678 Msa1264300:intron 35.0%
ACACATTTAACAGAACGATG+TGG - chr8_2:67784788-67784807 None:intergenic 35.0%
AACTCGCAAATTAGGAACAA+TGG + chr8_2:67784859-67784878 Msa1264300:intron 35.0%
ATTCAAAGGCTCTACAACAA+AGG + chr8_2:67784913-67784932 Msa1264300:intron 35.0%
ATATATGAGGGAGAGAGAAT+AGG - chr8_2:67784995-67785014 None:intergenic 35.0%
CCATGTGATTCTGATATATG+AGG - chr8_2:67785008-67785027 None:intergenic 35.0%
CCTCATATATCAGAATCACA+TGG + chr8_2:67785005-67785024 Msa1264300:intron 35.0%
! GTGCTGAAAGTGTAAAATTC+AGG + chr8_2:67785135-67785154 Msa1264300:intron 35.0%
!! TTGAGTCAAGTCCATTTTTG+AGG + chr8_2:67785327-67785346 Msa1264300:CDS 35.0%
AAAGAGGGTGAAGATAAGTT+TGG + chr8_2:67785581-67785600 Msa1264300:CDS 35.0%
! GTTTTCGCCTTTATAGCAAT+TGG + chr8_2:67785609-67785628 Msa1264300:CDS 35.0%
TCATGGGATGGATAAAATTC+TGG + chr8_2:67785661-67785680 Msa1264300:CDS 35.0%
! TAAAATTCTGGTTGATGCCA+TGG + chr8_2:67785673-67785692 Msa1264300:CDS 35.0%
! GGAAAATTTAGAGCAAGATG+AGG + chr8_2:67786022-67786041 Msa1264300:intron 35.0%
! GTCTGGTCTATAGTTTTTCT+TGG + chr8_2:67786286-67786305 Msa1264300:intron 35.0%
CATAGGAGCAACAATAAAGA+GGG - chr8_2:67786356-67786375 None:intergenic 35.0%
TCATAGGAGCAACAATAAAG+AGG - chr8_2:67786357-67786376 None:intergenic 35.0%
CATGTTAGGAGAATACTCAT+AGG - chr8_2:67786373-67786392 None:intergenic 35.0%
GATAATAGGATACTGTCTTG+GGG - chr8_2:67786405-67786424 None:intergenic 35.0%
! TATAGTGGAAGCTATCCTAT+AGG + chr8_2:67786431-67786450 Msa1264300:intron 35.0%
TGCATTTATAGCAGCTATAG+GGG - chr8_2:67786473-67786492 None:intergenic 35.0%
GCTGCTATAAATGCATTCAA+TGG + chr8_2:67786478-67786497 Msa1264300:intron 35.0%
!!! TAAATATTTTTTTGGGGGGG+GGG - chr8_2:67787166-67787185 None:intergenic 35.0%
!!! CTAAATATTTTTTTGGGGGG+GGG - chr8_2:67787167-67787186 None:intergenic 35.0%
AAGGATACCTCTTAGACATA+TGG - chr8_2:67787235-67787254 None:intergenic 35.0%
CATCTATGATTGAGAGCAAA+AGG - chr8_2:67787254-67787273 None:intergenic 35.0%
! GAGTTTTTGAATGGTATGTG+TGG - chr8_2:67787307-67787326 None:intergenic 35.0%
! ACATCCATGCGTCTTATTAA+TGG - chr8_2:67787440-67787459 None:intergenic 35.0%
ATTAATAAGACGCATGGATG+TGG + chr8_2:67787439-67787458 Msa1264300:intron 35.0%
TTTGCATTTGCACCGTATTA+AGG + chr8_2:67787578-67787597 Msa1264300:intron 35.0%
TTGCACCGTATTAAGGAAAA+AGG + chr8_2:67787585-67787604 Msa1264300:intron 35.0%
AGAATGTTTACTATCTACGG+TGG + chr8_2:67787652-67787671 Msa1264300:intron 35.0%
ACAAATCCATAATTGACGGA+TGG + chr8_2:67787739-67787758 Msa1264300:intron 35.0%
AAGAGATTTACATGGACATC+GGG - chr8_2:67787829-67787848 None:intergenic 35.0%
CAAGAGATTTACATGGACAT+CGG - chr8_2:67787830-67787849 None:intergenic 35.0%
TCATGATTTCTTCAAAGTGC+AGG + chr8_2:67787957-67787976 Msa1264300:intron 35.0%
! TTCTGACTTCTTTTCTGTAC+AGG + chr8_2:67788023-67788042 Msa1264300:intron 35.0%
!! TTGGTATTTTCGGGGATATA+TGG - chr8_2:67788090-67788109 None:intergenic 35.0%
! TTACCTTTCCCCAATTTTCT+TGG - chr8_2:67788144-67788163 None:intergenic 35.0%
CTGCAAAAAGTGGAAGAAAA+TGG - chr8_2:67788217-67788236 None:intergenic 35.0%
TTTAGGAGCAACTTCATCAA+AGG - chr8_2:67788581-67788600 None:intergenic 35.0%
CTAATTGGACGAGATTCTTT+AGG - chr8_2:67788598-67788617 None:intergenic 35.0%
ATGCCTGATTATGCCTAATT+AGG + chr8_2:67788634-67788653 Msa1264300:exon 35.0%
TGCATGAAAATAAGCCAACT+TGG - chr8_2:67788661-67788680 None:intergenic 35.0%
CATAACAAGGGGAAATTACT+TGG + chr8_2:67788776-67788795 Msa1264300:three_prime_UTR 35.0%
TTGGAGTAATGAGTTTGCAG+AGG - chr8_2:67782868-67782887 None:intergenic 40.0%
!!! ACGGTTTTGTTTGTTGTTGC+AGG + chr8_2:67782959-67782978 Msa1264300:intron 40.0%
!!! CGGTTTTGTTTGTTGTTGCA+GGG + chr8_2:67782960-67782979 Msa1264300:intron 40.0%
! TCAAATTCAAAACTGGCCTC+TGG - chr8_2:67782995-67783014 None:intergenic 40.0%
ATTTCTGCTCATTACTCACC+TGG + chr8_2:67783023-67783042 Msa1264300:CDS 40.0%
TGCTAATGCATGCAATGCAA+TGG + chr8_2:67783170-67783189 Msa1264300:intron 40.0%
GCTAATGCATGCAATGCAAT+GGG + chr8_2:67783171-67783190 Msa1264300:intron 40.0%
CTAATGCATGCAATGCAATG+GGG + chr8_2:67783172-67783191 Msa1264300:intron 40.0%
!! GATTAGACGTGTACTGGTTT+CGG + chr8_2:67783275-67783294 Msa1264300:intron 40.0%
! GGATTAACCCATCACCTTTT+AGG - chr8_2:67783440-67783459 None:intergenic 40.0%
!! GGTGATGGGTTAATCCATAA+AGG + chr8_2:67783444-67783463 Msa1264300:CDS 40.0%
GGTTAATCCATAAAGGGTTC+AGG + chr8_2:67783451-67783470 Msa1264300:CDS 40.0%
TTTGTTGCCTGAACCCTTTA+TGG - chr8_2:67783461-67783480 None:intergenic 40.0%
AGTTACAGTTATACGAGCTG+TGG + chr8_2:67783509-67783528 Msa1264300:CDS 40.0%
!!! CGCTATGGTTTTGAGCAAAT+CGG + chr8_2:67783591-67783610 Msa1264300:CDS 40.0%
TACTTCTCTTCCTAAGAAGG+TGG + chr8_2:67783653-67783672 Msa1264300:intron 40.0%
! GTGTGTTTTCTTCTTGGGTA+AGG + chr8_2:67783798-67783817 Msa1264300:intron 40.0%
CTTCTCTCTCTCATAAAGTG+TGG - chr8_2:67783900-67783919 None:intergenic 40.0%
CACACTTTATGAGAGAGAGA+AGG + chr8_2:67783898-67783917 Msa1264300:intron 40.0%
!! TTATGATTTCTAAAGCGCCC+TGG + chr8_2:67784194-67784213 Msa1264300:CDS 40.0%
TCTTCTCCTCTTGAAGATCT+TGG + chr8_2:67784330-67784349 Msa1264300:intron 40.0%
AGAAGACATTGTTGGAACTC+TGG + chr8_2:67784461-67784480 Msa1264300:CDS 40.0%
TTAAATCGCCATGGCTCATA+TGG - chr8_2:67784507-67784526 None:intergenic 40.0%
TTGTCATGCTTAAATCGCCA+TGG - chr8_2:67784516-67784535 None:intergenic 40.0%
TCAGAATCACATGGAATCCA+TGG + chr8_2:67785014-67785033 Msa1264300:intron 40.0%
CCATATGGAAAGTCTATACG+AGG - chr8_2:67785091-67785110 None:intergenic 40.0%
CCTCGTATAGACTTTCCATA+TGG + chr8_2:67785088-67785107 Msa1264300:intron 40.0%
CGTATAGACTTTCCATATGG+TGG + chr8_2:67785091-67785110 Msa1264300:intron 40.0%
ATAGAAGCAACTCCACCATA+TGG - chr8_2:67785106-67785125 None:intergenic 40.0%
GGTTGAAAGAAGATACTGCT+TGG + chr8_2:67785282-67785301 Msa1264300:intron 40.0%
ATAGACATCCAGCAACGAAA+TGG - chr8_2:67785377-67785396 None:intergenic 40.0%
ATGTCTATAGCTCACTGGTA+TGG + chr8_2:67785389-67785408 Msa1264300:intron 40.0%
TCGCCTTTATAGCAATTGGA+TGG + chr8_2:67785613-67785632 Msa1264300:CDS 40.0%
TGGCCATCCAATTGCTATAA+AGG - chr8_2:67785619-67785638 None:intergenic 40.0%
!! TATTGGCTTCGTCTCTATCT+AGG - chr8_2:67785813-67785832 None:intergenic 40.0%
ATAGATGAGCACTTTCACCA+TGG + chr8_2:67787267-67787286 Msa1264300:intron 40.0%
TTCATTGTGCTTACCCTCAA+TGG + chr8_2:67787368-67787387 Msa1264300:CDS 40.0%
CTTGCCATTAATAAGACGCA+TGG + chr8_2:67787433-67787452 Msa1264300:intron 40.0%
GAGATACCATCCGTCAATTA+TGG - chr8_2:67787748-67787767 None:intergenic 40.0%
! TAATTGACGGATGGTATCTC+AGG + chr8_2:67787748-67787767 Msa1264300:intron 40.0%
TCACAGGCAAGAGATTTACA+TGG - chr8_2:67787837-67787856 None:intergenic 40.0%
GGTTTGCGAAATTAACTCGA+TGG + chr8_2:67787978-67787997 Msa1264300:intron 40.0%
GGGATATATGGTGTGGAATA+TGG - chr8_2:67788078-67788097 None:intergenic 40.0%
!! ATTTTCGGGGATATATGGTG+TGG - chr8_2:67788085-67788104 None:intergenic 40.0%
GCTGCTCGTAAATTATAGCT+TGG - chr8_2:67788109-67788128 None:intergenic 40.0%
! CTTTCCCCAATTTTCTTGGA+TGG - chr8_2:67788140-67788159 None:intergenic 40.0%
CATCCAAGAAAATTGGGGAA+AGG + chr8_2:67788138-67788157 Msa1264300:CDS 40.0%
AGTATCTGAATGAGGCTAGT+TGG + chr8_2:67788488-67788507 Msa1264300:intron 40.0%
! TGAATGAGGCTAGTTGGAAT+TGG + chr8_2:67788494-67788513 Msa1264300:CDS 40.0%
GGACCTAATTAGGCATAATC+AGG - chr8_2:67788640-67788659 None:intergenic 40.0%
ATGCCTAATTAGGTCCAAGT+TGG + chr8_2:67788644-67788663 Msa1264300:exon 40.0%
AAGCCAACTTGGACCTAATT+AGG - chr8_2:67788650-67788669 None:intergenic 40.0%
CTCGTTAAGTTCACGGTTTA+TGG + chr8_2:67788803-67788822 Msa1264300:three_prime_UTR 40.0%
!! AGCTCTGAGAGACATTCATT+AGG + chr8_2:67788843-67788862 Msa1264300:three_prime_UTR 40.0%
! TTTTGTTAGGGCAATCGCAT+TGG + chr8_2:67788899-67788918 Msa1264300:three_prime_UTR 40.0%
!! GAGAGAGACTTGTTTGGTGT+GGG - chr8_2:67782743-67782762 None:intergenic 45.0%
! AGAGAGAGACTTGTTTGGTG+TGG - chr8_2:67782744-67782763 None:intergenic 45.0%
! GAGAGAGAGAGAGACTTGTT+TGG - chr8_2:67782749-67782768 None:intergenic 45.0%
TCCTCAGATTAGACGTGTAC+TGG + chr8_2:67783269-67783288 Msa1264300:intron 45.0%
ACCAGTACACGTCTAATCTG+AGG - chr8_2:67783273-67783292 None:intergenic 45.0%
TATACGAGCTGTGGCAATTC+CGG + chr8_2:67783518-67783537 Msa1264300:CDS 45.0%
AAACAGCTAGCAGAACGCTA+TGG + chr8_2:67783576-67783595 Msa1264300:CDS 45.0%
GAAGACAGGTCCTTTCTGTT+TGG - chr8_2:67784020-67784039 None:intergenic 45.0%
! GTATCTACTTCCTCTGGCTT+GGG + chr8_2:67784216-67784235 Msa1264300:CDS 45.0%
GAGAAGATCTGTCGAGAGAT+AGG - chr8_2:67784317-67784336 None:intergenic 45.0%
! GCCCCACAGTTCTTTGTTAT+AGG + chr8_2:67784396-67784415 Msa1264300:intron 45.0%
GAACGCGTGTACATTGGAAA+AGG - chr8_2:67784816-67784835 None:intergenic 45.0%
TATGAGGGAGAGAGAATAGG+TGG - chr8_2:67784992-67785011 None:intergenic 45.0%
GTTAGTTAGCGAAGAGTCCA+TGG - chr8_2:67785034-67785053 None:intergenic 45.0%
ATACGAGGAGAAAGACAGCA+GGG - chr8_2:67785076-67785095 None:intergenic 45.0%
TATACGAGGAGAAAGACAGC+AGG - chr8_2:67785077-67785096 None:intergenic 45.0%
TAGCATCCATGTATGCACTG+AGG + chr8_2:67785207-67785226 Msa1264300:intron 45.0%
GCTATACCTCAGTGCATACA+TGG - chr8_2:67785216-67785235 None:intergenic 45.0%
TCAAACTCATCCTGCCAAAC+AGG - chr8_2:67785311-67785330 None:intergenic 45.0%
GATATGGTCCATTTCGTTGC+TGG + chr8_2:67785366-67785385 Msa1264300:CDS 45.0%
ACAAGACTGGAATCATGGGA+TGG + chr8_2:67785649-67785668 Msa1264300:CDS 45.0%
! ATTCTGGTTGATGCCATGGT+TGG + chr8_2:67785677-67785696 Msa1264300:CDS 45.0%
! TTCTGGTTGATGCCATGGTT+GGG + chr8_2:67785678-67785697 Msa1264300:CDS 45.0%
ATGGTTGGGCTATCACTTCT+GGG + chr8_2:67785692-67785711 Msa1264300:CDS 45.0%
CGAAGCCAATAAACAGTCAC+TGG + chr8_2:67785822-67785841 Msa1264300:intron 45.0%
CCATCGTTTGTAGGGAATCA+GGG - chr8_2:67786062-67786081 None:intergenic 45.0%
ACCATCGTTTGTAGGGAATC+AGG - chr8_2:67786063-67786082 None:intergenic 45.0%
TCACCTTGTGCGATAAAGCA+TGG - chr8_2:67786177-67786196 None:intergenic 45.0%
ATGCTTTATCGCACAAGGTG+AGG + chr8_2:67786176-67786195 Msa1264300:intron 45.0%
GAGAATAGTGCAACACCTAC+AGG - chr8_2:67786322-67786341 None:intergenic 45.0%
GTGTTGCACTATTCTCCATC+TGG + chr8_2:67786326-67786345 Msa1264300:intron 45.0%
AATAAAGAGGGCTGACCAGA+TGG - chr8_2:67786344-67786363 None:intergenic 45.0%
ATAGGATACTGTCTTGGGGT+GGG - chr8_2:67786401-67786420 None:intergenic 45.0%
AATAGGATACTGTCTTGGGG+TGG - chr8_2:67786402-67786421 None:intergenic 45.0%
TCAGGTACAACCTAACGGTT+TGG - chr8_2:67787058-67787077 None:intergenic 45.0%
TGGTGCAGTATGATGTACCA+TGG - chr8_2:67787287-67787306 None:intergenic 45.0%
CACAGACAAATCTGCATGAC+TGG - chr8_2:67788347-67788366 None:intergenic 45.0%
TGGAGCTCTCGTTAAGTTCA+CGG + chr8_2:67788796-67788815 Msa1264300:three_prime_UTR 45.0%
!!! ATTTTTATAAAAGTAAAAAA+TGG + chr8_2:67786120-67786139 Msa1264300:intron 5.0%
GATCTGCGTCCACATTTGGA+GGG + chr8_2:67782716-67782735 Msa1264300:five_prime_UTR 50.0%
ATCTGCGTCCACATTTGGAG+GGG + chr8_2:67782717-67782736 Msa1264300:five_prime_UTR 50.0%
TGCAGGGTTCTTCATTCCAG+AGG + chr8_2:67782976-67782995 Msa1264300:intron 50.0%
GCCAGAGGAAGTAGATACCA+GGG - chr8_2:67784214-67784233 None:intergenic 50.0%
AGCCAGAGGAAGTAGATACC+AGG - chr8_2:67784215-67784234 None:intergenic 50.0%
GGTATCTACTTCCTCTGGCT+TGG + chr8_2:67784215-67784234 Msa1264300:CDS 50.0%
CTGTGGGGCAAAAACGAAAG+AGG - chr8_2:67784385-67784404 None:intergenic 50.0%
GACAGAGAACGCGTGTACAT+TGG - chr8_2:67784822-67784841 None:intergenic 50.0%
ATCCAGAGTCACAGTCTCCT+AGG + chr8_2:67784944-67784963 Msa1264300:intron 50.0%
TTCCTAGGAGACTGTGACTC+TGG - chr8_2:67784949-67784968 None:intergenic 50.0%
ATACTGCTTGGCAGCCTGTT+TGG + chr8_2:67785294-67785313 Msa1264300:CDS 50.0%
GCTGGATGTCTATAGCTCAC+TGG + chr8_2:67785384-67785403 Msa1264300:CDS 50.0%
CAGAAGTGATAGCCCAACCA+TGG - chr8_2:67785693-67785712 None:intergenic 50.0%
CATGGTTGGGCTATCACTTC+TGG + chr8_2:67785691-67785710 Msa1264300:CDS 50.0%
GCATACAACGCATGCAACCA+GGG - chr8_2:67785998-67786017 None:intergenic 50.0%
AGCATACAACGCATGCAACC+AGG - chr8_2:67785999-67786018 None:intergenic 50.0%
TTGCATGCGTTGTATGCTGC+CGG + chr8_2:67786001-67786020 Msa1264300:intron 50.0%
CAAGATGAGGGAGTTCAGCA+GGG + chr8_2:67786035-67786054 Msa1264300:intron 50.0%
AAGATGAGGGAGTTCAGCAG+GGG + chr8_2:67786036-67786055 Msa1264300:intron 50.0%
CCCTGATTCCCTACAAACGA+TGG + chr8_2:67786059-67786078 Msa1264300:intron 50.0%
CAGCCATGCTTTATCGCACA+AGG + chr8_2:67786171-67786190 Msa1264300:intron 50.0%
CTTGGTCTCTCTCTACCTGT+AGG + chr8_2:67786304-67786323 Msa1264300:intron 50.0%
CTGTGGGCCATATGTCTAAG+AGG + chr8_2:67787225-67787244 Msa1264300:intron 50.0%
GCTGCACAAGCACAGCTTAA+TGG + chr8_2:67787340-67787359 Msa1264300:CDS 50.0%
!! TCCACTGGAGCTGGTTCTAC+CGG - chr8_2:67783540-67783559 None:intergenic 55.0%
ACCAGCTCCAGTGGAAAGTG+CGG + chr8_2:67783545-67783564 Msa1264300:CDS 55.0%
CTGTACTCCGCACTTTCCAC+TGG - chr8_2:67783555-67783574 None:intergenic 55.0%
! ATCTGCCACTTCCTATGCGC+TGG + chr8_2:67784165-67784184 Msa1264300:CDS 55.0%
! TCTGCCACTTCCTATGCGCT+GGG + chr8_2:67784166-67784185 Msa1264300:CDS 55.0%
CATAAGAAGCCCCAGCGCAT+AGG - chr8_2:67784179-67784198 None:intergenic 55.0%
GCCCTGGTATCTACTTCCTC+TGG + chr8_2:67784210-67784229 Msa1264300:CDS 55.0%
!! TACTTCCTCTGGCTTGGGCT+TGG + chr8_2:67784221-67784240 Msa1264300:CDS 55.0%
TGGACAGGGACTGCTGTAAC+TGG + chr8_2:67784241-67784260 Msa1264300:CDS 55.0%
GGACAGGGACTGCTGTAACT+GGG + chr8_2:67784242-67784261 Msa1264300:CDS 55.0%
GACAGGGACTGCTGTAACTG+GGG + chr8_2:67784243-67784262 Msa1264300:CDS 55.0%
GGGAGAGAGAATAGGTGGCT+GGG - chr8_2:67784987-67785006 None:intergenic 55.0%
AGGGAGAGAGAATAGGTGGC+TGG - chr8_2:67784988-67785007 None:intergenic 55.0%
TAACTAGCCGTCTCCCCTTC+TGG + chr8_2:67785050-67785069 Msa1264300:intron 55.0%
AAAGACAGCAGGGCCAGAAG+GGG - chr8_2:67785066-67785085 None:intergenic 55.0%
GAAAGACAGCAGGGCCAGAA+GGG - chr8_2:67785067-67785086 None:intergenic 55.0%
AGAAAGACAGCAGGGCCAGA+AGG - chr8_2:67785068-67785087 None:intergenic 55.0%
GCAAGATGAGGGAGTTCAGC+AGG + chr8_2:67786034-67786053 Msa1264300:intron 55.0%
!! TGGGGTGGGTTGGACATGTT+AGG - chr8_2:67786387-67786406 None:intergenic 55.0%
GATACTGTCTTGGGGTGGGT+TGG - chr8_2:67786397-67786416 None:intergenic 55.0%
TCCGGTAGAACCAGCTCCAG+TGG + chr8_2:67783536-67783555 Msa1264300:CDS 60.0%
TCCGCACTTTCCACTGGAGC+TGG - chr8_2:67783549-67783568 None:intergenic 60.0%
! CTGCCACTTCCTATGCGCTG+GGG + chr8_2:67784167-67784186 Msa1264300:CDS 60.0%
AAGCCCCAGCGCATAGGAAG+TGG - chr8_2:67784173-67784192 None:intergenic 60.0%
!! CTCTGGCTTGGGCTTGGACA+GGG + chr8_2:67784227-67784246 Msa1264300:CDS 60.0%
TGCTTGGCAGCCTGTTTGGC+AGG + chr8_2:67785298-67785317 Msa1264300:CDS 60.0%
GGTGTGGGCCCCTCCAAATG+TGG - chr8_2:67782728-67782747 None:intergenic 65.0%
CCTGTCCAAGCCCAAGCCAG+AGG - chr8_2:67784229-67784248 None:intergenic 65.0%
!! CCTCTGGCTTGGGCTTGGAC+AGG + chr8_2:67784226-67784245 Msa1264300:CDS 65.0%
AGCAGGGCCAGAAGGGGAGA+CGG - chr8_2:67785060-67785079 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 67782716 67789033 67782716 ID=Msa1264300;Name=Msa1264300
chr8_2 mRNA 67782716 67789033 67782716 ID=Msa1264300-mRNA-1;Parent=Msa1264300;Name=Msa1264300-mRNA-1;_AED=0.08;_eAED=0.08;_QI=139|1|1|1|1|1|10|382|446
chr8_2 exon 67782716 67782893 67782716 ID=Msa1264300-mRNA-1:exon:22302;Parent=Msa1264300-mRNA-1
chr8_2 exon 67782981 67783044 67782981 ID=Msa1264300-mRNA-1:exon:22303;Parent=Msa1264300-mRNA-1
chr8_2 exon 67783427 67783671 67783427 ID=Msa1264300-mRNA-1:exon:22304;Parent=Msa1264300-mRNA-1
chr8_2 exon 67784121 67784264 67784121 ID=Msa1264300-mRNA-1:exon:22305;Parent=Msa1264300-mRNA-1
chr8_2 exon 67784405 67784556 67784405 ID=Msa1264300-mRNA-1:exon:22306;Parent=Msa1264300-mRNA-1
chr8_2 exon 67785283 67785405 67785283 ID=Msa1264300-mRNA-1:exon:22307;Parent=Msa1264300-mRNA-1
chr8_2 exon 67785536 67785713 67785536 ID=Msa1264300-mRNA-1:exon:22308;Parent=Msa1264300-mRNA-1
chr8_2 exon 67787271 67787389 67787271 ID=Msa1264300-mRNA-1:exon:22309;Parent=Msa1264300-mRNA-1
chr8_2 exon 67788045 67788159 67788045 ID=Msa1264300-mRNA-1:exon:22310;Parent=Msa1264300-mRNA-1
chr8_2 exon 67788490 67789033 67788490 ID=Msa1264300-mRNA-1:exon:22311;Parent=Msa1264300-mRNA-1
chr8_2 five_prime_UTR 67782716 67782854 67782716 ID=Msa1264300-mRNA-1:five_prime_utr;Parent=Msa1264300-mRNA-1
chr8_2 CDS 67782855 67782893 67782855 ID=Msa1264300-mRNA-1:cds;Parent=Msa1264300-mRNA-1
chr8_2 CDS 67782981 67783044 67782981 ID=Msa1264300-mRNA-1:cds;Parent=Msa1264300-mRNA-1
chr8_2 CDS 67783427 67783671 67783427 ID=Msa1264300-mRNA-1:cds;Parent=Msa1264300-mRNA-1
chr8_2 CDS 67784121 67784264 67784121 ID=Msa1264300-mRNA-1:cds;Parent=Msa1264300-mRNA-1
chr8_2 CDS 67784405 67784556 67784405 ID=Msa1264300-mRNA-1:cds;Parent=Msa1264300-mRNA-1
chr8_2 CDS 67785283 67785405 67785283 ID=Msa1264300-mRNA-1:cds;Parent=Msa1264300-mRNA-1
chr8_2 CDS 67785536 67785713 67785536 ID=Msa1264300-mRNA-1:cds;Parent=Msa1264300-mRNA-1
chr8_2 CDS 67787271 67787389 67787271 ID=Msa1264300-mRNA-1:cds;Parent=Msa1264300-mRNA-1
chr8_2 CDS 67788045 67788159 67788045 ID=Msa1264300-mRNA-1:cds;Parent=Msa1264300-mRNA-1
chr8_2 CDS 67788490 67788651 67788490 ID=Msa1264300-mRNA-1:cds;Parent=Msa1264300-mRNA-1
chr8_2 three_prime_UTR 67788652 67789033 67788652 ID=Msa1264300-mRNA-1:three_prime_utr;Parent=Msa1264300-mRNA-1
Gene Sequence

>Msa1264300

ATGGCTTGCACCTCTGCAAACTCATTACTCCAATTAAAGGGTTCTTCATTCCAGAGGCCAGTTTTGAATTTGAGAACAAACATTTCTGCTCATTACTCACCTGGCTTATTTAGCCTAAAAGGTGATGGGTTAATCCATAAAGGGTTCAGGCAACAAAGTCAAAAACATTTGATACCTAGAAATAAAGTTACAGTTATACGAGCTGTGGCAATTCCGGTAGAACCAGCTCCAGTGGAAAGTGCGGAGTACAGAAAACAGCTAGCAGAACGCTATGGTTTTGAGCAAATCGGAGAGCCGCTTCCAGACAATGTTACATTAAAAGATGTCATTACTTCTCTTCCTAAGAAGGTTTTTGAGATTGATGATGTTAAAGCATGGAAGTCTGTTTTGATATCTGCCACTTCCTATGCGCTGGGGCTTCTTATGATTTCTAAAGCGCCCTGGTATCTACTTCCTCTGGCTTGGGCTTGGACAGGGACTGCTGTAACTGGGTTCTTTGTTATAGGACATGATTGCGCTCACAAATCATTTTCAACAAACAAATTGGTAGAAGACATTGTTGGAACTCTGGCCTTTTTGCCACTAATTTATCCATATGAGCCATGGCGATTTAAGCATGACAAACATCATGCAAAAACAAACATGTTGAAAGAAGATACTGCTTGGCAGCCTGTTTGGCAGGATGAGTTTGAGTCAAGTCCATTTTTGAGGAAAGCAATAATATATGGATATGGTCCATTTCGTTGCTGGATGTCTATAGCTCACTGGTTGGTCTCTCACTTCGATTTGAAGACGTTTAGACCAAATGAAATAAAGAGGGTGAAGATAAGTTTGGCTTGTGTTTTCGCCTTTATAGCAATTGGATGGCCATTAATTATTTACAAGACTGGAATCATGGGATGGATAAAATTCTGGTTGATGCCATGGTTGGGCTATCACTTCTGGATGAGCACTTTCACCATGGTACATCATACTGCACCACACATACCATTCAAAAACTCAGAAGAATGGAATGCTGCACAAGCACAGCTTAATGGAACTGTTCATTGTGCTTACCCTCAATGGATCGAGATCTTATGCCATGATATTAATGTCCATATTCCACACCATATATCCCCGAAAATACCAAGCTATAATTTACGAGCAGCCCATAAATCCATCCAAGAAAATTGGGGAAAGTATCTGAATGAGGCTAGTTGGAATTGGCGATTGATGAAGACAATCATGACAGTGTGTCATGTGTACGATAAGCAGCAAAATTATGTCTCCTTTGATGAAGTTGCTCCTAAAGAATCTCGTCCAATTAGATTTTTGAAGAAAGTAATGCCTGATTATGCCTAA

Protein sequence

>Msa1264300

MACTSANSLLQLKGSSFQRPVLNLRTNISAHYSPGLFSLKGDGLIHKGFRQQSQKHLIPRNKVTVIRAVAIPVEPAPVESAEYRKQLAERYGFEQIGEPLPDNVTLKDVITSLPKKVFEIDDVKAWKSVLISATSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSTNKLVEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLKEDTAWQPVWQDEFESSPFLRKAIIYGYGPFRCWMSIAHWLVSHFDLKTFRPNEIKRVKISLACVFAFIAIGWPLIIYKTGIMGWIKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKNSEEWNAAQAQLNGTVHCAYPQWIEILCHDINVHIPHHISPKIPSYNLRAAHKSIQENWGKYLNEASWNWRLMKTIMTVCHVYDKQQNYVSFDEVAPKESRPIRFLKKVMPDYA*