AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1221780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221780 MtrunA17_Chr4g0072871 97.074 376 10 1 1 376 1 375 0.0 753
Msa1221780 MtrunA17_Chr1g0150471 47.075 359 140 8 20 375 4 315 2.04e-99 297
Msa1221780 MtrunA17_Chr3g0136701 49.444 360 104 11 20 375 4 289 3.53e-89 270
Msa1221780 MtrunA17_Chr7g0220721 64.835 91 32 0 20 110 24 114 4.84e-39 143
Msa1221780 MtrunA17_Chr1g0155811 45.161 93 41 1 22 104 5 97 1.88e-20 90.1
Msa1221780 MtrunA17_Chr5g0429341 43.333 90 51 0 21 110 4 93 9.57e-19 87.0
Msa1221780 MtrunA17_Chr7g0268691 28.049 164 99 3 22 185 20 164 8.73e-17 80.9
Msa1221780 MtrunA17_Chr7g0268691 41.176 68 40 0 273 340 302 369 7.94e-11 63.2
Msa1221780 MtrunA17_Chr4g0033641 39.130 92 47 1 22 104 5 96 1.23e-16 78.6
Msa1221780 MtrunA17_Chr3g0145061 32.331 133 73 2 22 137 5 137 1.70e-16 77.8
Msa1221780 MtrunA17_Chr4g0035651 40.860 93 45 1 22 104 5 97 3.28e-16 77.0
Msa1221780 MtrunA17_Chr5g0405151 43.210 81 38 1 21 93 4 84 3.49e-16 76.3
Msa1221780 MtrunA17_Chr3g0120711 38.889 90 54 1 21 110 4 92 4.88e-15 75.9
Msa1221780 MtrunA17_Chr3g0120711 35.714 112 72 0 232 343 287 398 8.54e-11 63.2
Msa1221780 MtrunA17_Chr2g0329511 36.957 92 49 1 22 104 5 96 5.43e-15 73.9
Msa1221780 MtrunA17_Chr2g0314671 38.043 92 48 1 22 104 5 96 2.01e-14 73.2
Msa1221780 MtrunA17_Chr3g0142221 36.170 94 49 1 22 104 5 98 7.94e-14 70.1
Msa1221780 MtrunA17_Chr8g0390971 32.778 180 110 4 168 342 228 401 9.95e-14 72.0
Msa1221780 MtrunA17_Chr2g0322941 39.024 82 50 0 21 102 43 124 6.18e-13 68.2
Msa1221780 MtrunA17_Chr7g0251781 40.541 74 44 0 22 95 5 78 7.19e-12 66.2
Msa1221780 MtrunA17_Chr5g0431351 53.226 62 26 1 283 341 155 216 1.21e-11 63.9
Msa1221780 MtrunA17_Chr1g0209861 48.052 77 29 2 265 341 359 424 1.61e-11 65.5
Msa1221780 MtrunA17_Chr2g0327621 43.548 62 32 1 287 345 140 201 2.80e-11 63.2
Msa1221780 MtrunA17_Chr2g0322951 59.184 49 20 0 295 343 88 136 4.81e-11 60.5
Msa1221780 MtrunA17_Chr1g0209071 34.146 82 54 0 20 101 3 84 5.50e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221780 AT5G57660.1 53.125 384 143 10 1 376 1 355 9.57e-117 343
Msa1221780 AT5G24930.1 48.964 386 141 12 20 376 4 362 5.89e-97 293
Msa1221780 AT2G24790.1 50.915 328 97 13 20 343 6 273 1.51e-91 277
Msa1221780 AT3G02380.1 39.674 368 177 11 20 376 14 347 1.05e-78 246
Msa1221780 AT5G15850.1 39.683 378 186 8 13 376 6 355 2.83e-76 240
Msa1221780 AT5G15840.1 38.032 376 208 12 13 376 11 373 1.21e-75 239
Msa1221780 AT2G24790.2 48.276 232 78 10 20 248 6 198 4.87e-56 183
Msa1221780 AT5G15840.2 34.211 228 139 6 13 229 11 238 3.36e-39 141
Msa1221780 AT3G21880.3 27.577 359 216 11 16 340 4 352 1.93e-24 103
Msa1221780 AT3G21880.2 27.577 359 216 11 16 340 4 352 1.93e-24 103
Msa1221780 AT3G21880.1 27.195 353 214 10 22 340 5 348 3.91e-24 102
Msa1221780 AT1G49130.2 25.439 342 192 10 19 342 18 314 6.95e-20 89.7
Msa1221780 AT1G49130.1 25.439 342 192 10 19 342 25 321 7.82e-20 89.7
Msa1221780 AT2G33500.1 44.944 89 49 0 22 110 12 100 4.13e-18 85.5
Msa1221780 AT2G33500.2 44.944 89 49 0 22 110 12 100 4.22e-18 85.5
Msa1221780 AT1G28050.1 43.820 89 50 0 22 110 9 97 3.83e-17 82.8
Msa1221780 AT1G75540.1 36.434 129 68 2 22 136 5 133 1.62e-16 80.1
Msa1221780 AT2G21320.1 40.449 89 45 1 21 101 4 92 1.78e-16 77.0
Msa1221780 AT2G47890.2 38.462 91 54 1 20 110 11 99 5.44e-16 77.0
Msa1221780 AT4G38960.1 43.210 81 38 1 21 93 4 84 5.80e-16 75.9
Msa1221780 AT4G38960.6 43.210 81 38 1 21 93 4 84 5.80e-16 75.9
Msa1221780 AT1G06040.1 40.217 92 46 1 22 104 5 96 6.18e-16 77.0
Msa1221780 AT2G47890.3 38.462 91 54 1 20 110 11 99 7.19e-16 77.8
Msa1221780 AT2G47890.1 38.462 91 54 1 20 110 11 99 7.69e-16 78.2
Msa1221780 AT1G06040.2 40.217 92 46 1 22 104 5 96 9.86e-16 75.1
Msa1221780 AT4G15250.1 33.544 158 90 5 22 175 5 151 1.70e-15 77.0
Msa1221780 AT5G48250.1 46.575 73 39 0 21 93 4 76 1.97e-15 77.4
Msa1221780 AT3G07650.3 45.205 73 40 0 21 93 4 76 3.44e-15 76.6
Msa1221780 AT3G07650.2 45.205 73 40 0 21 93 4 76 3.44e-15 76.6
Msa1221780 AT3G07650.4 45.205 73 40 0 21 93 4 76 3.44e-15 76.6
Msa1221780 AT3G07650.1 45.205 73 40 0 21 93 4 76 3.44e-15 76.6
Msa1221780 AT2G31380.1 36.036 111 57 2 22 123 5 110 6.30e-15 73.9
Msa1221780 AT1G78600.1 38.043 92 48 1 22 104 5 96 1.91e-14 73.6
Msa1221780 AT1G78600.2 38.043 92 48 1 22 104 5 96 2.42e-14 73.6
Msa1221780 AT1G73870.1 52.000 75 31 2 272 344 319 390 1.46e-13 72.0
Msa1221780 AT1G68190.2 36.585 82 52 0 20 101 41 122 2.89e-12 67.8
Msa1221780 AT1G68190.1 36.585 82 52 0 20 101 12 93 2.92e-12 67.8
Msa1221780 AT1G68190.3 36.585 82 52 0 20 101 12 93 2.92e-12 67.8
Msa1221780 AT4G39070.1 32.500 120 71 1 22 131 5 124 9.85e-12 64.7
Msa1221780 AT1G68520.1 67.391 46 15 0 299 344 357 402 1.69e-11 65.9
Msa1221780 AT4G10240.1 28.767 146 82 3 22 149 5 146 3.39e-11 61.6
Msa1221780 AT1G25440.1 69.767 43 13 0 299 341 361 403 6.00e-11 63.9

Find 130 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCGGAATCGATGGTTTC+AGG 0.197771 8_1:+85684561 Msa1221780:CDS
GCGAACCGGCCTTTAATTCT+AGG 0.209256 8_1:-85684741 None:intergenic
ATTATTATTATTATATTATT+AGG 0.210880 8_1:+85685143 Msa1221780:three_prime_UTR
TCAGAGATATCATACAATTT+TGG 0.229801 8_1:+85684540 Msa1221780:CDS
GGTGAGTTTGATGATTTCTT+AGG 0.235558 8_1:-85683513 None:intergenic
TTGAGTTTGGATCCGAAATT+AGG 0.238048 8_1:-85684120 None:intergenic
AGTGGTGAATTTGTTAGATT+TGG 0.277983 8_1:+85685172 Msa1221780:three_prime_UTR
ATCTTGAGTTTCATTGAGTT+TGG 0.285458 8_1:-85684133 None:intergenic
TTAAAGAAAGGAGAACTTTA+CGG 0.307730 8_1:+85685303 Msa1221780:three_prime_UTR
GTCCACATCCGAGTCAATTT+CGG 0.307960 8_1:-85684772 None:intergenic
GGAGAACTTTACGGGACTTT+TGG 0.316406 8_1:+85685312 Msa1221780:three_prime_UTR
GGAATGTGATGGATAGTTAA+AGG 0.317309 8_1:-85684361 None:intergenic
TGCTGCAGTTAATATTGTTC+TGG 0.321062 8_1:-85684224 None:intergenic
ATTACTTACGCTATGGCTAA+TGG 0.327776 8_1:-85684382 None:intergenic
AGAGATGTTCTTCTCTGATA+TGG 0.330404 8_1:+85684167 Msa1221780:CDS
GAAACCCGGCCTAGAATTAA+AGG 0.334745 8_1:+85684732 Msa1221780:CDS
TTTGGTTGATAGTATTAATC+TGG 0.339570 8_1:+85685330 Msa1221780:three_prime_UTR
CTTCCCGCCACGAGCGCGTC+TGG 0.340581 8_1:+85683821 Msa1221780:CDS
TGCTGCAGCAGCGGCGGTGG+AGG 0.348757 8_1:-85684013 None:intergenic
ATCTGTATCCCCATTCCTAT+TGG 0.357942 8_1:+85685465 Msa1221780:three_prime_UTR
CGCTTCTTAGCTTATTTGAA+TGG 0.369817 8_1:-85683573 None:intergenic
TAAAGAAAGGAGAACTTTAC+GGG 0.370392 8_1:+85685304 Msa1221780:three_prime_UTR
CTGATTCCGAATCCTAATTT+CGG 0.371287 8_1:+85684108 Msa1221780:CDS
TTGGCGCGGTTGTACGGTAT+GGG 0.377403 8_1:+85685191 Msa1221780:three_prime_UTR
ACTTGAATTGAAGATTTGTC+TGG 0.402334 8_1:+85685249 Msa1221780:three_prime_UTR
TTTCGGTTCGTTTAGCGAAC+CGG 0.407227 8_1:-85684755 None:intergenic
GGAGTAGGTTTAGTTTGAAC+AGG 0.409524 8_1:-85684270 None:intergenic
GGCTGCTGCAGCAGCGGCGG+TGG 0.410930 8_1:-85684016 None:intergenic
CGCGGCTGCTGCAGCAGCGG+CGG 0.413463 8_1:-85684019 None:intergenic
GAGTTTGTTAGCAGAGTGAA+TGG 0.415127 8_1:-85683797 None:intergenic
AGGAACAACGCTATCGTTCA+TGG 0.416132 8_1:-85684250 None:intergenic
GTTCCTACTGACGACGGTTA+CGG 0.428387 8_1:+85684057 Msa1221780:CDS
GATCGGAATCGATGGTTTCA+GGG 0.428883 8_1:+85684562 Msa1221780:CDS
AGTTCCTTCATCTATGCTAA+TGG 0.433285 8_1:+85684824 Msa1221780:CDS
TCAGTCGATTTCTTACCAAC+TGG 0.434072 8_1:+85685098 Msa1221780:three_prime_UTR
TCTGACACCGTGTTTGCATC+TGG 0.435148 8_1:-85684522 None:intergenic
TTTGGCGCGGTTGTACGGTA+TGG 0.437776 8_1:+85685190 Msa1221780:three_prime_UTR
TAGCATAACATAACATAAGA+TGG 0.443681 8_1:+85683636 Msa1221780:exon
ACACATTGAAACCATGGTAT+AGG 0.446939 8_1:-85684914 None:intergenic
TTAGATTTGGCGCGGTTGTA+CGG 0.448042 8_1:+85685185 Msa1221780:three_prime_UTR
TTGCTCCTTGCACCACCCCT+TGG 0.448969 8_1:-85684599 None:intergenic
GAGTAATCAAAATCAAGAAA+TGG 0.454052 8_1:-85684192 None:intergenic
TATCCCCATTCCTATTGGAT+GGG 0.456584 8_1:+85685470 Msa1221780:three_prime_UTR
TTGGATCCGAAATTAGGATT+CGG 0.457793 8_1:-85684114 None:intergenic
GCACCCCATCCAATAGGAAT+GGG 0.458086 8_1:-85685474 None:intergenic
GTGAGTTTGATGATTTCTTA+GGG 0.461552 8_1:-85683512 None:intergenic
GTATCCCCATTCCTATTGGA+TGG 0.463059 8_1:+85685469 Msa1221780:three_prime_UTR
TGTCTCTGATCTTGATCTGA+GGG 0.465071 8_1:-85685033 None:intergenic
TGGCGCGGTTGTACGGTATG+GGG 0.469487 8_1:+85685192 Msa1221780:three_prime_UTR
GCTTTGCACGTGACGGAAGC+TGG 0.472622 8_1:-85683868 None:intergenic
AAAGTGGGAACGACGCCGTA+TGG 0.475583 8_1:-85684852 None:intergenic
GGAGTGGCACCCCATCCAAT+AGG 0.476032 8_1:-85685480 None:intergenic
TACAGATACAGCTGGAGAAA+AGG 0.476181 8_1:-85685501 None:intergenic
GCTTCTTAGCTTATTTGAAT+GGG 0.479060 8_1:-85683572 None:intergenic
AACCGAAATTGACTCGGATG+TGG 0.481901 8_1:+85684770 Msa1221780:CDS
AGACGCGGCTGCTGCAGCAG+CGG 0.489035 8_1:-85684022 None:intergenic
CCGGCCTTTAATTCTAGGCC+GGG 0.498099 8_1:-85684736 None:intergenic
TATATTATTAGGATGAAAAG+TGG 0.498800 8_1:+85685154 Msa1221780:three_prime_UTR
ACCGGCCTTTAATTCTAGGC+CGG 0.502804 8_1:-85684737 None:intergenic
GGAACTGCGAGAGGATCAGC+AGG 0.506955 8_1:-85684807 None:intergenic
TGTTTGAATGAATTTGAGTT+GGG 0.508113 8_1:-85683534 None:intergenic
TTGTCTCTGATCTTGATCTG+AGG 0.511866 8_1:-85685034 None:intergenic
AGCAACACAATTATGTGGAA+TGG 0.513777 8_1:+85684617 Msa1221780:CDS
GAGTCAAAGAAAGGCTCGAC+GGG 0.517190 8_1:-85683970 None:intergenic
TTGCAAGAATCACATAGCTT+AGG 0.521043 8_1:-85683709 None:intergenic
CATAAGATGGGTATTGAAAG+AGG 0.525020 8_1:+85683649 Msa1221780:exon
ATTAAAACAGTTGATCCAGT+TGG 0.525383 8_1:-85685113 None:intergenic
GGCACCCCATCCAATAGGAA+TGG 0.527469 8_1:-85685475 None:intergenic
TTGTTTGAATGAATTTGAGT+TGG 0.539673 8_1:-85683535 None:intergenic
ATGCTAATGGACTGTCCATA+CGG 0.541142 8_1:+85684837 Msa1221780:CDS
TTTGATGATTTCTTAGGGTG+CGG 0.546755 8_1:-85683507 None:intergenic
ATCCCCATTCCTATTGGATG+GGG 0.548830 8_1:+85685471 Msa1221780:three_prime_UTR
GAGCGAGTGGATTGGCGGAG+TGG 0.557021 8_1:-85683930 None:intergenic
TTTCTAATGGGATCAGATCA+CGG 0.558451 8_1:+85685436 Msa1221780:three_prime_UTR
AATACGGATACAGATACAGC+TGG 0.560432 8_1:-85685509 None:intergenic
TGCGTCAGCTTTGCACGTGA+CGG 0.560515 8_1:-85683875 None:intergenic
TTATGAGGTACAGAGAGAAG+AGG 0.563746 8_1:+85684655 Msa1221780:CDS
TTACACATCGCGCACTAATG+AGG 0.564234 8_1:+85685069 Msa1221780:three_prime_UTR
TGGATTGGCGGAGTGGATGT+CGG 0.572687 8_1:-85683923 None:intergenic
AGTAACCAAGGGGTGGTGCA+AGG 0.573333 8_1:+85684594 Msa1221780:CDS
ATCGGAATCGATGGTTTCAG+GGG 0.573412 8_1:+85684563 Msa1221780:CDS
TTTGTTAGCAGAGTGAATGG+TGG 0.574357 8_1:-85683794 None:intergenic
CAAGAATCACATAGCTTAGG+TGG 0.574456 8_1:-85683706 None:intergenic
GATTAGTGATGATGATTCTG+TGG 0.575368 8_1:+85684952 Msa1221780:three_prime_UTR
GATTCAGCGGAGTCAAAGAA+AGG 0.575805 8_1:-85683979 None:intergenic
GTGACGACGAGCGAGTGGAT+TGG 0.575999 8_1:-85683938 None:intergenic
TTATGATTCATCATCCGCGC+TGG 0.581963 8_1:-85684291 None:intergenic
CAGTCCATTAGCATAGATGA+AGG 0.582055 8_1:-85684828 None:intergenic
ATTCTAACACATTGAAACCA+TGG 0.582224 8_1:-85684920 None:intergenic
AGCATAACATAACATAAGAT+GGG 0.590121 8_1:+85683637 Msa1221780:exon
TCTTAGCTTATTTGAATGGG+AGG 0.591279 8_1:-85683569 None:intergenic
TGGAATGGATCGTGAAGCGA+GGG 0.592479 8_1:+85684632 Msa1221780:CDS
ACGACGAGCGAGTGGATTGG+CGG 0.592706 8_1:-85683935 None:intergenic
CAAGGAGCAACACAATTATG+TGG 0.592806 8_1:+85684612 Msa1221780:CDS
TGTATGTATAGTCAAGTGAC+TGG 0.593195 8_1:-85683473 None:intergenic
ATGATGAATCATAACTCAGA+AGG 0.596503 8_1:+85684300 Msa1221780:CDS
GATCAGCAGGGTTATAGAGA+CGG 0.597767 8_1:-85684794 None:intergenic
CGTTCGTGACGACGAGCGAG+TGG 0.599256 8_1:-85683943 None:intergenic
ATCGTGAAGCGAGGGTTATG+AGG 0.603818 8_1:+85684640 Msa1221780:CDS
TTCATCATCCGCGCTGGAGT+AGG 0.609886 8_1:-85684285 None:intergenic
CCCGGCCTAGAATTAAAGGC+CGG 0.612766 8_1:+85684736 Msa1221780:CDS
CTATGGCTAATGGAATGTGA+TGG 0.620066 8_1:-85684372 None:intergenic
ATCTTCACTTGACGTAGGAG+TGG 0.622983 8_1:+85684497 Msa1221780:CDS
TCGTCATCTTCACTTGACGT+AGG 0.628545 8_1:+85684492 Msa1221780:CDS
GGGGTGTGAATAGTAACCAA+GGG 0.630822 8_1:+85684583 Msa1221780:CDS
GGATTTGACGACGGATTCAG+CGG 0.633353 8_1:-85683992 None:intergenic
GAAAAGCTTATGCAGAAACC+CGG 0.633617 8_1:+85684718 Msa1221780:CDS
GTGGAATGGATCGTGAAGCG+AGG 0.634097 8_1:+85684631 Msa1221780:CDS
GGAGTCAAAGAAAGGCTCGA+CGG 0.644574 8_1:-85683971 None:intergenic
CACACATCCAGACGCGCTCG+TGG 0.646583 8_1:-85683828 None:intergenic
AGTGGTGCCAGATGCAAACA+CGG 0.653433 8_1:+85684515 Msa1221780:CDS
ATAGATGAAGGAACTGCGAG+AGG 0.656412 8_1:-85684816 None:intergenic
TAAACGAACCGAAATTGACT+CGG 0.658214 8_1:+85684764 Msa1221780:CDS
TTCGTTGTTCCTACTGACGA+CGG 0.659626 8_1:+85684051 Msa1221780:CDS
ATTAGTGATGATGATTCTGT+GGG 0.668921 8_1:+85684953 Msa1221780:three_prime_UTR
CACCCCATCCAATAGGAATG+GGG 0.670692 8_1:-85685473 None:intergenic
GGCGGTGGAGGATTTGACGA+CGG 0.677124 8_1:-85684001 None:intergenic
ATAGAAATGCAGAATCAGAA+CGG 0.678407 8_1:-85683756 None:intergenic
AGTATGAATCTCCTATACCA+TGG 0.679029 8_1:+85684903 Msa1221780:three_prime_UTR
TGAATTTGTTAGATTTGGCG+CGG 0.681844 8_1:+85685177 Msa1221780:three_prime_UTR
AAACAAGGTCAGGATAACAG+AGG 0.687745 8_1:+85684880 Msa1221780:three_prime_UTR
TGTGAATAGTAACCAAGGGG+TGG 0.689533 8_1:+85684587 Msa1221780:CDS
ATACAGCTGGAGAAAAGGAG+TGG 0.692065 8_1:-85685496 None:intergenic
TCGGAATCGATGGTTTCAGG+GGG 0.701775 8_1:+85684564 Msa1221780:CDS
ATGATGCTGAAGCAGCTGCG+TGG 0.709512 8_1:+85684085 Msa1221780:CDS
AACAACGAAATTGAAAGACG+CGG 0.720436 8_1:-85684037 None:intergenic
GGGTGTGAATAGTAACCAAG+GGG 0.734808 8_1:+85684584 Msa1221780:CDS
AAGATGGGTATTGAAAGAGG+AGG 0.750089 8_1:+85683652 Msa1221780:exon
AAACTAAACCTACTCCAGCG+CGG 0.776053 8_1:+85684277 Msa1221780:CDS
GAACTGCGAGAGGATCAGCA+GGG 0.795439 8_1:-85684806 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATTATATTATT+AGG + chr8_1:85685143-85685162 Msa1221780:three_prime_UTR 0.0%
!! ATTATTATTATTATATTATT+AGG + chr8_1:85685143-85685162 Msa1221780:three_prime_UTR 0.0%
!! ATAAAAACAAAATAATCAAA+CGG - chr8_1:85684981-85685000 None:intergenic 10.0%
!! ATAAAAACAAAATAATCAAA+CGG - chr8_1:85684981-85685000 None:intergenic 10.0%
!! TTAATTAATTACTTACGCTA+TGG - chr8_1:85684392-85684411 None:intergenic 20.0%
!! TATATTATTAGGATGAAAAG+TGG + chr8_1:85685154-85685173 Msa1221780:three_prime_UTR 20.0%
!! TAACAAGCAAAAGTAAAAAA+CGG - chr8_1:85685286-85685305 None:intergenic 20.0%
!! CTTCAGAAAAAAGAAAAATA+CGG - chr8_1:85685528-85685547 None:intergenic 20.0%
!! TTAATTAATTACTTACGCTA+TGG - chr8_1:85684392-85684411 None:intergenic 20.0%
!! TATATTATTAGGATGAAAAG+TGG + chr8_1:85685154-85685173 Msa1221780:three_prime_UTR 20.0%
!! TAACAAGCAAAAGTAAAAAA+CGG - chr8_1:85685286-85685305 None:intergenic 20.0%
!! CTTCAGAAAAAAGAAAAATA+CGG - chr8_1:85685528-85685547 None:intergenic 20.0%
!! TGTTTGAATGAATTTGAGTT+GGG - chr8_1:85683537-85683556 None:intergenic 25.0%
! TTGTTTGAATGAATTTGAGT+TGG - chr8_1:85683538-85683557 None:intergenic 25.0%
! TAGCATAACATAACATAAGA+TGG + chr8_1:85683636-85683655 Msa1221780:exon 25.0%
! AGCATAACATAACATAAGAT+GGG + chr8_1:85683637-85683656 Msa1221780:exon 25.0%
! GAGTAATCAAAATCAAGAAA+TGG - chr8_1:85684195-85684214 None:intergenic 25.0%
!! TCAGAGATATCATACAATTT+TGG + chr8_1:85684540-85684559 Msa1221780:CDS 25.0%
!! GATATCATACAATTTTGGAT+CGG + chr8_1:85684545-85684564 Msa1221780:CDS 25.0%
! AACAAGCAAAAGTAAAAAAC+GGG - chr8_1:85685285-85685304 None:intergenic 25.0%
!!! TACTTTTGCTTGTTAAAGAA+AGG + chr8_1:85685291-85685310 Msa1221780:three_prime_UTR 25.0%
! TTAAAGAAAGGAGAACTTTA+CGG + chr8_1:85685303-85685322 Msa1221780:three_prime_UTR 25.0%
!!! TTTGGTTGATAGTATTAATC+TGG + chr8_1:85685330-85685349 Msa1221780:three_prime_UTR 25.0%
!!! AAGAAAGTGTCTTTTTCTAA+TGG + chr8_1:85685423-85685442 Msa1221780:three_prime_UTR 25.0%
!!! AGAAAGTGTCTTTTTCTAAT+GGG + chr8_1:85685424-85685443 Msa1221780:three_prime_UTR 25.0%
!! TGTTTGAATGAATTTGAGTT+GGG - chr8_1:85683537-85683556 None:intergenic 25.0%
! TTGTTTGAATGAATTTGAGT+TGG - chr8_1:85683538-85683557 None:intergenic 25.0%
! TAGCATAACATAACATAAGA+TGG + chr8_1:85683636-85683655 Msa1221780:exon 25.0%
! AGCATAACATAACATAAGAT+GGG + chr8_1:85683637-85683656 Msa1221780:exon 25.0%
! GAGTAATCAAAATCAAGAAA+TGG - chr8_1:85684195-85684214 None:intergenic 25.0%
!! TCAGAGATATCATACAATTT+TGG + chr8_1:85684540-85684559 Msa1221780:CDS 25.0%
!! GATATCATACAATTTTGGAT+CGG + chr8_1:85684545-85684564 Msa1221780:CDS 25.0%
! AACAAGCAAAAGTAAAAAAC+GGG - chr8_1:85685285-85685304 None:intergenic 25.0%
!!! TACTTTTGCTTGTTAAAGAA+AGG + chr8_1:85685291-85685310 Msa1221780:three_prime_UTR 25.0%
! TTAAAGAAAGGAGAACTTTA+CGG + chr8_1:85685303-85685322 Msa1221780:three_prime_UTR 25.0%
!!! TTTGGTTGATAGTATTAATC+TGG + chr8_1:85685330-85685349 Msa1221780:three_prime_UTR 25.0%
!!! AAGAAAGTGTCTTTTTCTAA+TGG + chr8_1:85685423-85685442 Msa1221780:three_prime_UTR 25.0%
!!! AGAAAGTGTCTTTTTCTAAT+GGG + chr8_1:85685424-85685443 Msa1221780:three_prime_UTR 25.0%
! GTGAGTTTGATGATTTCTTA+GGG - chr8_1:85683515-85683534 None:intergenic 30.0%
GCTTCTTAGCTTATTTGAAT+GGG - chr8_1:85683575-85683594 None:intergenic 30.0%
ATAGAAATGCAGAATCAGAA+CGG - chr8_1:85683759-85683778 None:intergenic 30.0%
ATCTTGAGTTTCATTGAGTT+TGG - chr8_1:85684136-85684155 None:intergenic 30.0%
ATGATGAATCATAACTCAGA+AGG + chr8_1:85684300-85684319 Msa1221780:CDS 30.0%
!! TGATTTGGTTTGTTATTAGC+AGG + chr8_1:85684467-85684486 Msa1221780:intron 30.0%
! GAATAGTCTTCTCGAATTTT+CGG - chr8_1:85684686-85684705 None:intergenic 30.0%
!!! TTCCCACTTTTTAGTAAACA+AGG + chr8_1:85684865-85684884 Msa1221780:exon 30.0%
! GACCTTGTTTACTAAAAAGT+GGG - chr8_1:85684870-85684889 None:intergenic 30.0%
! TGACCTTGTTTACTAAAAAG+TGG - chr8_1:85684871-85684890 None:intergenic 30.0%
!! ACTTTTTAGTAAACAAGGTC+AGG + chr8_1:85684870-85684889 Msa1221780:exon 30.0%
ATTCTAACACATTGAAACCA+TGG - chr8_1:85684923-85684942 None:intergenic 30.0%
! ATTAGTGATGATGATTCTGT+GGG + chr8_1:85684953-85684972 Msa1221780:three_prime_UTR 30.0%
ATTAAAACAGTTGATCCAGT+TGG - chr8_1:85685116-85685135 None:intergenic 30.0%
!! AGTGGTGAATTTGTTAGATT+TGG + chr8_1:85685172-85685191 Msa1221780:three_prime_UTR 30.0%
ACTTGAATTGAAGATTTGTC+TGG + chr8_1:85685249-85685268 Msa1221780:three_prime_UTR 30.0%
TAAAGAAAGGAGAACTTTAC+GGG + chr8_1:85685304-85685323 Msa1221780:three_prime_UTR 30.0%
! GTGAGTTTGATGATTTCTTA+GGG - chr8_1:85683515-85683534 None:intergenic 30.0%
GCTTCTTAGCTTATTTGAAT+GGG - chr8_1:85683575-85683594 None:intergenic 30.0%
ATAGAAATGCAGAATCAGAA+CGG - chr8_1:85683759-85683778 None:intergenic 30.0%
ATCTTGAGTTTCATTGAGTT+TGG - chr8_1:85684136-85684155 None:intergenic 30.0%
ATGATGAATCATAACTCAGA+AGG + chr8_1:85684300-85684319 Msa1221780:CDS 30.0%
!! TGATTTGGTTTGTTATTAGC+AGG + chr8_1:85684467-85684486 Msa1221780:intron 30.0%
! GAATAGTCTTCTCGAATTTT+CGG - chr8_1:85684686-85684705 None:intergenic 30.0%
!!! TTCCCACTTTTTAGTAAACA+AGG + chr8_1:85684865-85684884 Msa1221780:exon 30.0%
! GACCTTGTTTACTAAAAAGT+GGG - chr8_1:85684870-85684889 None:intergenic 30.0%
! TGACCTTGTTTACTAAAAAG+TGG - chr8_1:85684871-85684890 None:intergenic 30.0%
!! ACTTTTTAGTAAACAAGGTC+AGG + chr8_1:85684870-85684889 Msa1221780:exon 30.0%
ATTCTAACACATTGAAACCA+TGG - chr8_1:85684923-85684942 None:intergenic 30.0%
! ATTAGTGATGATGATTCTGT+GGG + chr8_1:85684953-85684972 Msa1221780:three_prime_UTR 30.0%
ATTAAAACAGTTGATCCAGT+TGG - chr8_1:85685116-85685135 None:intergenic 30.0%
!! AGTGGTGAATTTGTTAGATT+TGG + chr8_1:85685172-85685191 Msa1221780:three_prime_UTR 30.0%
ACTTGAATTGAAGATTTGTC+TGG + chr8_1:85685249-85685268 Msa1221780:three_prime_UTR 30.0%
TAAAGAAAGGAGAACTTTAC+GGG + chr8_1:85685304-85685323 Msa1221780:three_prime_UTR 30.0%
TGTATGTATAGTCAAGTGAC+TGG - chr8_1:85683476-85683495 None:intergenic 35.0%
! TTTGATGATTTCTTAGGGTG+CGG - chr8_1:85683510-85683529 None:intergenic 35.0%
! GGTGAGTTTGATGATTTCTT+AGG - chr8_1:85683516-85683535 None:intergenic 35.0%
TCTTAGCTTATTTGAATGGG+AGG - chr8_1:85683572-85683591 None:intergenic 35.0%
CGCTTCTTAGCTTATTTGAA+TGG - chr8_1:85683576-85683595 None:intergenic 35.0%
!! CATAAGATGGGTATTGAAAG+AGG + chr8_1:85683649-85683668 Msa1221780:exon 35.0%
TTGCAAGAATCACATAGCTT+AGG - chr8_1:85683712-85683731 None:intergenic 35.0%
AACAACGAAATTGAAAGACG+CGG - chr8_1:85684040-85684059 None:intergenic 35.0%
CTGATTCCGAATCCTAATTT+CGG + chr8_1:85684108-85684127 Msa1221780:CDS 35.0%
TTGGATCCGAAATTAGGATT+CGG - chr8_1:85684117-85684136 None:intergenic 35.0%
TTGAGTTTGGATCCGAAATT+AGG - chr8_1:85684123-85684142 None:intergenic 35.0%
AGAGATGTTCTTCTCTGATA+TGG + chr8_1:85684167-85684186 Msa1221780:CDS 35.0%
TGCTGCAGTTAATATTGTTC+TGG - chr8_1:85684227-85684246 None:intergenic 35.0%
!! GGAATGTGATGGATAGTTAA+AGG - chr8_1:85684364-85684383 None:intergenic 35.0%
ATTACTTACGCTATGGCTAA+TGG - chr8_1:85684385-85684404 None:intergenic 35.0%
AGCAACACAATTATGTGGAA+TGG + chr8_1:85684617-85684636 Msa1221780:CDS 35.0%
TAAACGAACCGAAATTGACT+CGG + chr8_1:85684764-85684783 Msa1221780:CDS 35.0%
AGTTCCTTCATCTATGCTAA+TGG + chr8_1:85684824-85684843 Msa1221780:CDS 35.0%
AGTATGAATCTCCTATACCA+TGG + chr8_1:85684903-85684922 Msa1221780:three_prime_UTR 35.0%
ACACATTGAAACCATGGTAT+AGG - chr8_1:85684917-85684936 None:intergenic 35.0%
! GATTAGTGATGATGATTCTG+TGG + chr8_1:85684952-85684971 Msa1221780:three_prime_UTR 35.0%
!! TGAATTTGTTAGATTTGGCG+CGG + chr8_1:85685177-85685196 Msa1221780:three_prime_UTR 35.0%
TTTCTAATGGGATCAGATCA+CGG + chr8_1:85685436-85685455 Msa1221780:three_prime_UTR 35.0%
TGTATGTATAGTCAAGTGAC+TGG - chr8_1:85683476-85683495 None:intergenic 35.0%
! TTTGATGATTTCTTAGGGTG+CGG - chr8_1:85683510-85683529 None:intergenic 35.0%
! GGTGAGTTTGATGATTTCTT+AGG - chr8_1:85683516-85683535 None:intergenic 35.0%
TCTTAGCTTATTTGAATGGG+AGG - chr8_1:85683572-85683591 None:intergenic 35.0%
CGCTTCTTAGCTTATTTGAA+TGG - chr8_1:85683576-85683595 None:intergenic 35.0%
!! CATAAGATGGGTATTGAAAG+AGG + chr8_1:85683649-85683668 Msa1221780:exon 35.0%
TTGCAAGAATCACATAGCTT+AGG - chr8_1:85683712-85683731 None:intergenic 35.0%
AACAACGAAATTGAAAGACG+CGG - chr8_1:85684040-85684059 None:intergenic 35.0%
CTGATTCCGAATCCTAATTT+CGG + chr8_1:85684108-85684127 Msa1221780:CDS 35.0%
TTGGATCCGAAATTAGGATT+CGG - chr8_1:85684117-85684136 None:intergenic 35.0%
TTGAGTTTGGATCCGAAATT+AGG - chr8_1:85684123-85684142 None:intergenic 35.0%
AGAGATGTTCTTCTCTGATA+TGG + chr8_1:85684167-85684186 Msa1221780:CDS 35.0%
TGCTGCAGTTAATATTGTTC+TGG - chr8_1:85684227-85684246 None:intergenic 35.0%
!! GGAATGTGATGGATAGTTAA+AGG - chr8_1:85684364-85684383 None:intergenic 35.0%
ATTACTTACGCTATGGCTAA+TGG - chr8_1:85684385-85684404 None:intergenic 35.0%
AGCAACACAATTATGTGGAA+TGG + chr8_1:85684617-85684636 Msa1221780:CDS 35.0%
TAAACGAACCGAAATTGACT+CGG + chr8_1:85684764-85684783 Msa1221780:CDS 35.0%
AGTTCCTTCATCTATGCTAA+TGG + chr8_1:85684824-85684843 Msa1221780:CDS 35.0%
AGTATGAATCTCCTATACCA+TGG + chr8_1:85684903-85684922 Msa1221780:three_prime_UTR 35.0%
ACACATTGAAACCATGGTAT+AGG - chr8_1:85684917-85684936 None:intergenic 35.0%
! GATTAGTGATGATGATTCTG+TGG + chr8_1:85684952-85684971 Msa1221780:three_prime_UTR 35.0%
!! TGAATTTGTTAGATTTGGCG+CGG + chr8_1:85685177-85685196 Msa1221780:three_prime_UTR 35.0%
TTTCTAATGGGATCAGATCA+CGG + chr8_1:85685436-85685455 Msa1221780:three_prime_UTR 35.0%
!! AAGATGGGTATTGAAAGAGG+AGG + chr8_1:85683652-85683671 Msa1221780:exon 40.0%
! GGACTAAAGAGTTTTCGAAG+CGG + chr8_1:85683673-85683692 Msa1221780:CDS 40.0%
CAAGAATCACATAGCTTAGG+TGG - chr8_1:85683709-85683728 None:intergenic 40.0%
TTTGTTAGCAGAGTGAATGG+TGG - chr8_1:85683797-85683816 None:intergenic 40.0%
!! GAGTTTGTTAGCAGAGTGAA+TGG - chr8_1:85683800-85683819 None:intergenic 40.0%
!! GGAGTAGGTTTAGTTTGAAC+AGG - chr8_1:85684273-85684292 None:intergenic 40.0%
CTATGGCTAATGGAATGTGA+TGG - chr8_1:85684375-85684394 None:intergenic 40.0%
! CAATTTTGGATCGGAATCGA+TGG + chr8_1:85684554-85684573 Msa1221780:CDS 40.0%
CAAGGAGCAACACAATTATG+TGG + chr8_1:85684612-85684631 Msa1221780:CDS 40.0%
TTATGAGGTACAGAGAGAAG+AGG + chr8_1:85684655-85684674 Msa1221780:CDS 40.0%
GAAAAGCTTATGCAGAAACC+CGG + chr8_1:85684718-85684737 Msa1221780:CDS 40.0%
CAGTCCATTAGCATAGATGA+AGG - chr8_1:85684831-85684850 None:intergenic 40.0%
!! ATGCTAATGGACTGTCCATA+CGG + chr8_1:85684837-85684856 Msa1221780:CDS 40.0%
AAACAAGGTCAGGATAACAG+AGG + chr8_1:85684880-85684899 Msa1221780:three_prime_UTR 40.0%
TGTCTCTGATCTTGATCTGA+GGG - chr8_1:85685036-85685055 None:intergenic 40.0%
TTGTCTCTGATCTTGATCTG+AGG - chr8_1:85685037-85685056 None:intergenic 40.0%
! TCAGTCGATTTCTTACCAAC+TGG + chr8_1:85685098-85685117 Msa1221780:three_prime_UTR 40.0%
! AAGAGCATGGTGAAAAAGCT+TGG + chr8_1:85685222-85685241 Msa1221780:three_prime_UTR 40.0%
ATCTGTATCCCCATTCCTAT+TGG + chr8_1:85685465-85685484 Msa1221780:three_prime_UTR 40.0%
TATCCCCATTCCTATTGGAT+GGG + chr8_1:85685470-85685489 Msa1221780:three_prime_UTR 40.0%
TACAGATACAGCTGGAGAAA+AGG - chr8_1:85685504-85685523 None:intergenic 40.0%
AATACGGATACAGATACAGC+TGG - chr8_1:85685512-85685531 None:intergenic 40.0%
!! AAGATGGGTATTGAAAGAGG+AGG + chr8_1:85683652-85683671 Msa1221780:exon 40.0%
! GGACTAAAGAGTTTTCGAAG+CGG + chr8_1:85683673-85683692 Msa1221780:CDS 40.0%
CAAGAATCACATAGCTTAGG+TGG - chr8_1:85683709-85683728 None:intergenic 40.0%
TTTGTTAGCAGAGTGAATGG+TGG - chr8_1:85683797-85683816 None:intergenic 40.0%
!! GAGTTTGTTAGCAGAGTGAA+TGG - chr8_1:85683800-85683819 None:intergenic 40.0%
!! GGAGTAGGTTTAGTTTGAAC+AGG - chr8_1:85684273-85684292 None:intergenic 40.0%
CTATGGCTAATGGAATGTGA+TGG - chr8_1:85684375-85684394 None:intergenic 40.0%
! CAATTTTGGATCGGAATCGA+TGG + chr8_1:85684554-85684573 Msa1221780:CDS 40.0%
CAAGGAGCAACACAATTATG+TGG + chr8_1:85684612-85684631 Msa1221780:CDS 40.0%
TTATGAGGTACAGAGAGAAG+AGG + chr8_1:85684655-85684674 Msa1221780:CDS 40.0%
GAAAAGCTTATGCAGAAACC+CGG + chr8_1:85684718-85684737 Msa1221780:CDS 40.0%
CAGTCCATTAGCATAGATGA+AGG - chr8_1:85684831-85684850 None:intergenic 40.0%
!! ATGCTAATGGACTGTCCATA+CGG + chr8_1:85684837-85684856 Msa1221780:CDS 40.0%
AAACAAGGTCAGGATAACAG+AGG + chr8_1:85684880-85684899 Msa1221780:three_prime_UTR 40.0%
TGTCTCTGATCTTGATCTGA+GGG - chr8_1:85685036-85685055 None:intergenic 40.0%
TTGTCTCTGATCTTGATCTG+AGG - chr8_1:85685037-85685056 None:intergenic 40.0%
! TCAGTCGATTTCTTACCAAC+TGG + chr8_1:85685098-85685117 Msa1221780:three_prime_UTR 40.0%
! AAGAGCATGGTGAAAAAGCT+TGG + chr8_1:85685222-85685241 Msa1221780:three_prime_UTR 40.0%
ATCTGTATCCCCATTCCTAT+TGG + chr8_1:85685465-85685484 Msa1221780:three_prime_UTR 40.0%
TATCCCCATTCCTATTGGAT+GGG + chr8_1:85685470-85685489 Msa1221780:three_prime_UTR 40.0%
TACAGATACAGCTGGAGAAA+AGG - chr8_1:85685504-85685523 None:intergenic 40.0%
AATACGGATACAGATACAGC+TGG - chr8_1:85685512-85685531 None:intergenic 40.0%
! TAAAGAGTTTTCGAAGCGGC+TGG + chr8_1:85683677-85683696 Msa1221780:CDS 45.0%
ATCAGAACGGCAAAAAAGCG+CGG - chr8_1:85683746-85683765 None:intergenic 45.0%
GATTCAGCGGAGTCAAAGAA+AGG - chr8_1:85683982-85684001 None:intergenic 45.0%
TTCGTTGTTCCTACTGACGA+CGG + chr8_1:85684051-85684070 Msa1221780:CDS 45.0%
AGGAACAACGCTATCGTTCA+TGG - chr8_1:85684253-85684272 None:intergenic 45.0%
AAACTAAACCTACTCCAGCG+CGG + chr8_1:85684277-85684296 Msa1221780:CDS 45.0%
TTATGATTCATCATCCGCGC+TGG - chr8_1:85684294-85684313 None:intergenic 45.0%
TCGTCATCTTCACTTGACGT+AGG + chr8_1:85684492-85684511 Msa1221780:CDS 45.0%
ATCTTCACTTGACGTAGGAG+TGG + chr8_1:85684497-85684516 Msa1221780:CDS 45.0%
GATCGGAATCGATGGTTTCA+GGG + chr8_1:85684562-85684581 Msa1221780:CDS 45.0%
ATCGGAATCGATGGTTTCAG+GGG + chr8_1:85684563-85684582 Msa1221780:CDS 45.0%
GGGGTGTGAATAGTAACCAA+GGG + chr8_1:85684583-85684602 Msa1221780:CDS 45.0%
GGGTGTGAATAGTAACCAAG+GGG + chr8_1:85684584-85684603 Msa1221780:CDS 45.0%
TGTGAATAGTAACCAAGGGG+TGG + chr8_1:85684587-85684606 Msa1221780:CDS 45.0%
GAAACCCGGCCTAGAATTAA+AGG + chr8_1:85684732-85684751 Msa1221780:CDS 45.0%
! TTTCGGTTCGTTTAGCGAAC+CGG - chr8_1:85684758-85684777 None:intergenic 45.0%
!! AACCGAAATTGACTCGGATG+TGG + chr8_1:85684770-85684789 Msa1221780:CDS 45.0%
GTCCACATCCGAGTCAATTT+CGG - chr8_1:85684775-85684794 None:intergenic 45.0%
GATCAGCAGGGTTATAGAGA+CGG - chr8_1:85684797-85684816 None:intergenic 45.0%
ATAGATGAAGGAACTGCGAG+AGG - chr8_1:85684819-85684838 None:intergenic 45.0%
TTACACATCGCGCACTAATG+AGG + chr8_1:85685069-85685088 Msa1221780:three_prime_UTR 45.0%
TTAGATTTGGCGCGGTTGTA+CGG + chr8_1:85685185-85685204 Msa1221780:three_prime_UTR 45.0%
! GGAGAACTTTACGGGACTTT+TGG + chr8_1:85685312-85685331 Msa1221780:three_prime_UTR 45.0%
GTATCCCCATTCCTATTGGA+TGG + chr8_1:85685469-85685488 Msa1221780:three_prime_UTR 45.0%
ATCCCCATTCCTATTGGATG+GGG + chr8_1:85685471-85685490 Msa1221780:three_prime_UTR 45.0%
ATACAGCTGGAGAAAAGGAG+TGG - chr8_1:85685499-85685518 None:intergenic 45.0%
! GTATAGTCAAGTGACTGGTC+AGG - chr8_1:85683471-85683490 None:intergenic 45.0%
! TAAAGAGTTTTCGAAGCGGC+TGG + chr8_1:85683677-85683696 Msa1221780:CDS 45.0%
ATCAGAACGGCAAAAAAGCG+CGG - chr8_1:85683746-85683765 None:intergenic 45.0%
GATTCAGCGGAGTCAAAGAA+AGG - chr8_1:85683982-85684001 None:intergenic 45.0%
TTCGTTGTTCCTACTGACGA+CGG + chr8_1:85684051-85684070 Msa1221780:CDS 45.0%
AGGAACAACGCTATCGTTCA+TGG - chr8_1:85684253-85684272 None:intergenic 45.0%
AAACTAAACCTACTCCAGCG+CGG + chr8_1:85684277-85684296 Msa1221780:CDS 45.0%
TTATGATTCATCATCCGCGC+TGG - chr8_1:85684294-85684313 None:intergenic 45.0%
TCGTCATCTTCACTTGACGT+AGG + chr8_1:85684492-85684511 Msa1221780:CDS 45.0%
ATCTTCACTTGACGTAGGAG+TGG + chr8_1:85684497-85684516 Msa1221780:CDS 45.0%
GATCGGAATCGATGGTTTCA+GGG + chr8_1:85684562-85684581 Msa1221780:CDS 45.0%
ATCGGAATCGATGGTTTCAG+GGG + chr8_1:85684563-85684582 Msa1221780:CDS 45.0%
GGGGTGTGAATAGTAACCAA+GGG + chr8_1:85684583-85684602 Msa1221780:CDS 45.0%
GGGTGTGAATAGTAACCAAG+GGG + chr8_1:85684584-85684603 Msa1221780:CDS 45.0%
TGTGAATAGTAACCAAGGGG+TGG + chr8_1:85684587-85684606 Msa1221780:CDS 45.0%
GAAACCCGGCCTAGAATTAA+AGG + chr8_1:85684732-85684751 Msa1221780:CDS 45.0%
! TTTCGGTTCGTTTAGCGAAC+CGG - chr8_1:85684758-85684777 None:intergenic 45.0%
!! AACCGAAATTGACTCGGATG+TGG + chr8_1:85684770-85684789 Msa1221780:CDS 45.0%
GTCCACATCCGAGTCAATTT+CGG - chr8_1:85684775-85684794 None:intergenic 45.0%
GATCAGCAGGGTTATAGAGA+CGG - chr8_1:85684797-85684816 None:intergenic 45.0%
ATAGATGAAGGAACTGCGAG+AGG - chr8_1:85684819-85684838 None:intergenic 45.0%
TTACACATCGCGCACTAATG+AGG + chr8_1:85685069-85685088 Msa1221780:three_prime_UTR 45.0%
TTAGATTTGGCGCGGTTGTA+CGG + chr8_1:85685185-85685204 Msa1221780:three_prime_UTR 45.0%
! GGAGAACTTTACGGGACTTT+TGG + chr8_1:85685312-85685331 Msa1221780:three_prime_UTR 45.0%
GTATCCCCATTCCTATTGGA+TGG + chr8_1:85685469-85685488 Msa1221780:three_prime_UTR 45.0%
ATCCCCATTCCTATTGGATG+GGG + chr8_1:85685471-85685490 Msa1221780:three_prime_UTR 45.0%
ATACAGCTGGAGAAAAGGAG+TGG - chr8_1:85685499-85685518 None:intergenic 45.0%
!! TTAATTAATTAATAATGATT+TGG + chr8_1:85684452-85684471 Msa1221780:intron 5.0%
!! TTAATTAATTAATAATGATT+TGG + chr8_1:85684452-85684471 Msa1221780:intron 5.0%
GAGTCAAAGAAAGGCTCGAC+GGG - chr8_1:85683973-85683992 None:intergenic 50.0%
GGAGTCAAAGAAAGGCTCGA+CGG - chr8_1:85683974-85683993 None:intergenic 50.0%
! GGATTTGACGACGGATTCAG+CGG - chr8_1:85683995-85684014 None:intergenic 50.0%
GTTCCTACTGACGACGGTTA+CGG + chr8_1:85684057-85684076 Msa1221780:CDS 50.0%
! AGTGGTGCCAGATGCAAACA+CGG + chr8_1:85684515-85684534 Msa1221780:CDS 50.0%
TCTGACACCGTGTTTGCATC+TGG - chr8_1:85684525-85684544 None:intergenic 50.0%
GGATCGGAATCGATGGTTTC+AGG + chr8_1:85684561-85684580 Msa1221780:CDS 50.0%
TCGGAATCGATGGTTTCAGG+GGG + chr8_1:85684564-85684583 Msa1221780:CDS 50.0%
! GGGGGTGTGAATAGTAACCA+AGG + chr8_1:85684582-85684601 Msa1221780:CDS 50.0%
TGGAATGGATCGTGAAGCGA+GGG + chr8_1:85684632-85684651 Msa1221780:CDS 50.0%
ATCGTGAAGCGAGGGTTATG+AGG + chr8_1:85684640-85684659 Msa1221780:CDS 50.0%
ACCGGCCTTTAATTCTAGGC+CGG - chr8_1:85684740-85684759 None:intergenic 50.0%
GCGAACCGGCCTTTAATTCT+AGG - chr8_1:85684744-85684763 None:intergenic 50.0%
GCATGGTGAAAAAGCTTGGC+TGG + chr8_1:85685226-85685245 Msa1221780:three_prime_UTR 50.0%
CACCCCATCCAATAGGAATG+GGG - chr8_1:85685476-85685495 None:intergenic 50.0%
GCACCCCATCCAATAGGAAT+GGG - chr8_1:85685477-85685496 None:intergenic 50.0%
GAGTCAAAGAAAGGCTCGAC+GGG - chr8_1:85683973-85683992 None:intergenic 50.0%
GGAGTCAAAGAAAGGCTCGA+CGG - chr8_1:85683974-85683993 None:intergenic 50.0%
! GGATTTGACGACGGATTCAG+CGG - chr8_1:85683995-85684014 None:intergenic 50.0%
GTTCCTACTGACGACGGTTA+CGG + chr8_1:85684057-85684076 Msa1221780:CDS 50.0%
! AGTGGTGCCAGATGCAAACA+CGG + chr8_1:85684515-85684534 Msa1221780:CDS 50.0%
TCTGACACCGTGTTTGCATC+TGG - chr8_1:85684525-85684544 None:intergenic 50.0%
GGATCGGAATCGATGGTTTC+AGG + chr8_1:85684561-85684580 Msa1221780:CDS 50.0%
TCGGAATCGATGGTTTCAGG+GGG + chr8_1:85684564-85684583 Msa1221780:CDS 50.0%
! GGGGGTGTGAATAGTAACCA+AGG + chr8_1:85684582-85684601 Msa1221780:CDS 50.0%
TGGAATGGATCGTGAAGCGA+GGG + chr8_1:85684632-85684651 Msa1221780:CDS 50.0%
ATCGTGAAGCGAGGGTTATG+AGG + chr8_1:85684640-85684659 Msa1221780:CDS 50.0%
ACCGGCCTTTAATTCTAGGC+CGG - chr8_1:85684740-85684759 None:intergenic 50.0%
GCGAACCGGCCTTTAATTCT+AGG - chr8_1:85684744-85684763 None:intergenic 50.0%
GCATGGTGAAAAAGCTTGGC+TGG + chr8_1:85685226-85685245 Msa1221780:three_prime_UTR 50.0%
CACCCCATCCAATAGGAATG+GGG - chr8_1:85685476-85685495 None:intergenic 50.0%
GCACCCCATCCAATAGGAAT+GGG - chr8_1:85685477-85685496 None:intergenic 50.0%
! AGAACGGCAAAAAAGCGCGG+CGG - chr8_1:85683743-85683762 None:intergenic 55.0%
TGCGTCAGCTTTGCACGTGA+CGG - chr8_1:85683878-85683897 None:intergenic 55.0%
!! TGGATTGGCGGAGTGGATGT+CGG - chr8_1:85683926-85683945 None:intergenic 55.0%
TGACCGTAACCGTCGTCAGT+AGG - chr8_1:85684063-85684082 None:intergenic 55.0%
ATGATGCTGAAGCAGCTGCG+TGG + chr8_1:85684085-85684104 Msa1221780:CDS 55.0%
TTCATCATCCGCGCTGGAGT+AGG - chr8_1:85684288-85684307 None:intergenic 55.0%
AGTAACCAAGGGGTGGTGCA+AGG + chr8_1:85684594-85684613 Msa1221780:CDS 55.0%
GTGGAATGGATCGTGAAGCG+AGG + chr8_1:85684631-85684650 Msa1221780:CDS 55.0%
CCGGCCTTTAATTCTAGGCC+GGG - chr8_1:85684739-85684758 None:intergenic 55.0%
CCCGGCCTAGAATTAAAGGC+CGG + chr8_1:85684736-85684755 Msa1221780:CDS 55.0%
GAACTGCGAGAGGATCAGCA+GGG - chr8_1:85684809-85684828 None:intergenic 55.0%
AAAGTGGGAACGACGCCGTA+TGG - chr8_1:85684855-85684874 None:intergenic 55.0%
TTTGGCGCGGTTGTACGGTA+TGG + chr8_1:85685190-85685209 Msa1221780:three_prime_UTR 55.0%
TTGGCGCGGTTGTACGGTAT+GGG + chr8_1:85685191-85685210 Msa1221780:three_prime_UTR 55.0%
GGCACCCCATCCAATAGGAA+TGG - chr8_1:85685478-85685497 None:intergenic 55.0%
! AGAACGGCAAAAAAGCGCGG+CGG - chr8_1:85683743-85683762 None:intergenic 55.0%
TGCGTCAGCTTTGCACGTGA+CGG - chr8_1:85683878-85683897 None:intergenic 55.0%
!! TGGATTGGCGGAGTGGATGT+CGG - chr8_1:85683926-85683945 None:intergenic 55.0%
TGACCGTAACCGTCGTCAGT+AGG - chr8_1:85684063-85684082 None:intergenic 55.0%
ATGATGCTGAAGCAGCTGCG+TGG + chr8_1:85684085-85684104 Msa1221780:CDS 55.0%
TTCATCATCCGCGCTGGAGT+AGG - chr8_1:85684288-85684307 None:intergenic 55.0%
AGTAACCAAGGGGTGGTGCA+AGG + chr8_1:85684594-85684613 Msa1221780:CDS 55.0%
GTGGAATGGATCGTGAAGCG+AGG + chr8_1:85684631-85684650 Msa1221780:CDS 55.0%
CCGGCCTTTAATTCTAGGCC+GGG - chr8_1:85684739-85684758 None:intergenic 55.0%
CCCGGCCTAGAATTAAAGGC+CGG + chr8_1:85684736-85684755 Msa1221780:CDS 55.0%
GAACTGCGAGAGGATCAGCA+GGG - chr8_1:85684809-85684828 None:intergenic 55.0%
AAAGTGGGAACGACGCCGTA+TGG - chr8_1:85684855-85684874 None:intergenic 55.0%
TTTGGCGCGGTTGTACGGTA+TGG + chr8_1:85685190-85685209 Msa1221780:three_prime_UTR 55.0%
TTGGCGCGGTTGTACGGTAT+GGG + chr8_1:85685191-85685210 Msa1221780:three_prime_UTR 55.0%
GGCACCCCATCCAATAGGAA+TGG - chr8_1:85685478-85685497 None:intergenic 55.0%
! GAACGGCAAAAAAGCGCGGC+GGG - chr8_1:85683742-85683761 None:intergenic 60.0%
! GCTTTGCACGTGACGGAAGC+TGG - chr8_1:85683871-85683890 None:intergenic 60.0%
!! ACGACGAGCGAGTGGATTGG+CGG - chr8_1:85683938-85683957 None:intergenic 60.0%
GTGACGACGAGCGAGTGGAT+TGG - chr8_1:85683941-85683960 None:intergenic 60.0%
GGCGGTGGAGGATTTGACGA+CGG - chr8_1:85684004-85684023 None:intergenic 60.0%
TTGCTCCTTGCACCACCCCT+TGG - chr8_1:85684602-85684621 None:intergenic 60.0%
GGAACTGCGAGAGGATCAGC+AGG - chr8_1:85684810-85684829 None:intergenic 60.0%
TGGCGCGGTTGTACGGTATG+GGG + chr8_1:85685192-85685211 Msa1221780:three_prime_UTR 60.0%
ATGGGGGCAGAGCAAGAGCA+TGG + chr8_1:85685209-85685228 Msa1221780:three_prime_UTR 60.0%
GGAGTGGCACCCCATCCAAT+AGG - chr8_1:85685483-85685502 None:intergenic 60.0%
! GAACGGCAAAAAAGCGCGGC+GGG - chr8_1:85683742-85683761 None:intergenic 60.0%
! GCTTTGCACGTGACGGAAGC+TGG - chr8_1:85683871-85683890 None:intergenic 60.0%
!! ACGACGAGCGAGTGGATTGG+CGG - chr8_1:85683938-85683957 None:intergenic 60.0%
GTGACGACGAGCGAGTGGAT+TGG - chr8_1:85683941-85683960 None:intergenic 60.0%
GGCGGTGGAGGATTTGACGA+CGG - chr8_1:85684004-85684023 None:intergenic 60.0%
TTGCTCCTTGCACCACCCCT+TGG - chr8_1:85684602-85684621 None:intergenic 60.0%
GGAACTGCGAGAGGATCAGC+AGG - chr8_1:85684810-85684829 None:intergenic 60.0%
TGGCGCGGTTGTACGGTATG+GGG + chr8_1:85685192-85685211 Msa1221780:three_prime_UTR 60.0%
ATGGGGGCAGAGCAAGAGCA+TGG + chr8_1:85685209-85685228 Msa1221780:three_prime_UTR 60.0%
GGAGTGGCACCCCATCCAAT+AGG - chr8_1:85685483-85685502 None:intergenic 60.0%
ACATCCAGACGCGCTCGTGG+CGG - chr8_1:85683828-85683847 None:intergenic 65.0%
CACACATCCAGACGCGCTCG+TGG - chr8_1:85683831-85683850 None:intergenic 65.0%
!! GAGCGAGTGGATTGGCGGAG+TGG - chr8_1:85683933-85683952 None:intergenic 65.0%
CGTTCGTGACGACGAGCGAG+TGG - chr8_1:85683946-85683965 None:intergenic 65.0%
GGCGCGGTTGTACGGTATGG+GGG + chr8_1:85685193-85685212 Msa1221780:three_prime_UTR 65.0%
ACATCCAGACGCGCTCGTGG+CGG - chr8_1:85683828-85683847 None:intergenic 65.0%
CACACATCCAGACGCGCTCG+TGG - chr8_1:85683831-85683850 None:intergenic 65.0%
!! GAGCGAGTGGATTGGCGGAG+TGG - chr8_1:85683933-85683952 None:intergenic 65.0%
CGTTCGTGACGACGAGCGAG+TGG - chr8_1:85683946-85683965 None:intergenic 65.0%
GGCGCGGTTGTACGGTATGG+GGG + chr8_1:85685193-85685212 Msa1221780:three_prime_UTR 65.0%
CATCCAGACGCGCTCGTGGC+GGG - chr8_1:85683827-85683846 None:intergenic 70.0%
AGACGCGGCTGCTGCAGCAG+CGG - chr8_1:85684025-85684044 None:intergenic 70.0%
CATCCAGACGCGCTCGTGGC+GGG - chr8_1:85683827-85683846 None:intergenic 70.0%
AGACGCGGCTGCTGCAGCAG+CGG - chr8_1:85684025-85684044 None:intergenic 70.0%
CTTCCCGCCACGAGCGCGTC+TGG + chr8_1:85683821-85683840 Msa1221780:CDS 75.0%
TGCTGCAGCAGCGGCGGTGG+AGG - chr8_1:85684016-85684035 None:intergenic 75.0%
CTTCCCGCCACGAGCGCGTC+TGG + chr8_1:85683821-85683840 Msa1221780:CDS 75.0%
TGCTGCAGCAGCGGCGGTGG+AGG - chr8_1:85684016-85684035 None:intergenic 75.0%
! GGCTGCTGCAGCAGCGGCGG+TGG - chr8_1:85684019-85684038 None:intergenic 80.0%
! CGCGGCTGCTGCAGCAGCGG+CGG - chr8_1:85684022-85684041 None:intergenic 80.0%
! GGCTGCTGCAGCAGCGGCGG+TGG - chr8_1:85684019-85684038 None:intergenic 80.0%
! CGCGGCTGCTGCAGCAGCGG+CGG - chr8_1:85684022-85684041 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 85683470 85685583 85683470 ID=Msa1221780;Name=Msa1221780
chr8_1 mRNA 85683470 85685583 85683470 ID=Msa1221780-mRNA-1;Parent=Msa1221780;Name=Msa1221780-mRNA-1;_AED=0.02;_eAED=0.02;_QI=185|1|1|1|1|1|2|705|376
chr8_1 exon 85683470 85684395 85683470 ID=Msa1221780-mRNA-1:exon:30777;Parent=Msa1221780-mRNA-1
chr8_1 exon 85684489 85685583 85684489 ID=Msa1221780-mRNA-1:exon:30778;Parent=Msa1221780-mRNA-1
chr8_1 five_prime_UTR 85683470 85683654 85683470 ID=Msa1221780-mRNA-1:five_prime_utr;Parent=Msa1221780-mRNA-1
chr8_1 CDS 85683655 85684395 85683655 ID=Msa1221780-mRNA-1:cds;Parent=Msa1221780-mRNA-1
chr8_1 CDS 85684489 85684878 85684489 ID=Msa1221780-mRNA-1:cds;Parent=Msa1221780-mRNA-1
chr8_1 three_prime_UTR 85684879 85685583 85684879 ID=Msa1221780-mRNA-1:three_prime_utr;Parent=Msa1221780-mRNA-1
Gene Sequence

>Msa1221780

ATGGGTATTGAAAGAGGAGGACTAAAGAGTTTTCGAAGCGGCTGGAGTGTGCCACCTAAGCTATGTGATTCTTGCAAGCTTACTCCCGCCGCGCTTTTTTGCCGTTCTGATTCTGCATTTCTATGCATCAACTGTGATTCCACCATTCACTCTGCTAACAAACTCTCTTCCCGCCACGAGCGCGTCTGGATGTGTGAAGTTTGTGAACAAGCACCAGCTTCCGTCACGTGCAAAGCTGACGCAGCTGCTCTATGCGTCACGTGCGATTCCGACATCCACTCCGCCAATCCACTCGCTCGTCGTCACGAACGTGTTCCCGTCGAGCCTTTCTTTGACTCCGCTGAATCCGTCGTCAAATCCTCCACCGCCGCTGCTGCAGCAGCCGCGTCTTTCAATTTCGTTGTTCCTACTGACGACGGTTACGGTCAAGATGATGCTGAAGCAGCTGCGTGGCTGATTCCGAATCCTAATTTCGGATCCAAACTCAATGAAACTCAAGATATCAAAACTAGAGAGATGTTCTTCTCTGATATGGATCCATTTCTTGATTTTGATTACTCAAACAATTTCCAGAACAATATTAACTGCAGCAACGCCATGAACGATAGCGTTGTTCCTGTTCAAACTAAACCTACTCCAGCGCGGATGATGAATCATAACTCAGAAGGTTGCTTTGACATTGATTTTTGCAGATCGAAGCTATCTTCCTTTAACTATCCATCACATTCCATTAGCCATAGCGTTTCGTCATCTTCACTTGACGTAGGAGTGGTGCCAGATGCAAACACGGTGTCAGAGATATCATACAATTTTGGATCGGAATCGATGGTTTCAGGGGGTGTGAATAGTAACCAAGGGGTGGTGCAAGGAGCAACACAATTATGTGGAATGGATCGTGAAGCGAGGGTTATGAGGTACAGAGAGAAGAGGAAGAACCGAAAATTCGAGAAGACTATTCGTTATGCTTCGCGAAAAGCTTATGCAGAAACCCGGCCTAGAATTAAAGGCCGGTTCGCTAAACGAACCGAAATTGACTCGGATGTGGACCGTCTCTATAACCCTGCTGATCCTCTCGCAGTTCCTTCATCTATGCTAATGGACTGTCCATACGGCGTCGTTCCCACTTTTTAG

Protein sequence

>Msa1221780

MGIERGGLKSFRSGWSVPPKLCDSCKLTPAALFCRSDSAFLCINCDSTIHSANKLSSRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSAESVVKSSTAAAAAAASFNFVVPTDDGYGQDDAEAAAWLIPNPNFGSKLNETQDIKTREMFFSDMDPFLDFDYSNNFQNNINCSNAMNDSVVPVQTKPTPARMMNHNSEGCFDIDFCRSKLSSFNYPSHSISHSVSSSSLDVGVVPDANTVSEISYNFGSESMVSGGVNSNQGVVQGATQLCGMDREARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVDRLYNPADPLAVPSSMLMDCPYGVVPTF*