AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1044520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1044520 MtrunA17_Chr4g0074071 98.879 446 5 0 23 468 1 446 0.0 922
Msa1044520 MtrunA17_Chr2g0305881 66.055 218 66 5 23 237 1 213 9.09e-96 287
Msa1044520 MtrunA17_Chr2g0305861 83.969 131 21 0 338 468 1 131 4.57e-80 244
Msa1044520 MtrunA17_Chr2g0305871 73.077 104 28 0 238 341 6 109 8.22e-52 171
Msa1044520 MtrunA17_Chr5g0430241 27.812 320 215 9 112 419 30 345 7.22e-30 120
Msa1044520 MtrunA17_Chr7g0242601 28.115 313 207 9 119 419 93 399 2.53e-29 119
Msa1044520 MtrunA17_Chr4g0006241 28.660 321 205 10 115 419 81 393 5.52e-29 118
Msa1044520 MtrunA17_Chr3g0105171 30.682 264 162 8 170 419 80 336 6.10e-24 103
Msa1044520 MtrunA17_Chr1g0175301 23.642 313 215 6 127 416 33 344 1.66e-19 90.1
Msa1044520 MtrunA17_Chr7g0258651 23.913 322 219 9 113 416 31 344 1.78e-17 84.0
Msa1044520 MtrunA17_Chr1g0210511 24.569 232 157 5 201 416 10 239 5.75e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1044520 AT4G30950.1 72.197 446 123 1 23 467 1 446 0.0 686
Msa1044520 AT3G11170.1 27.027 370 243 12 91 445 66 423 1.91e-28 117
Msa1044520 AT5G05580.1 28.070 342 222 11 119 445 84 416 4.96e-28 116
Msa1044520 AT2G29980.1 27.526 287 193 7 170 445 79 361 3.07e-27 113
Msa1044520 AT5G05580.2 28.664 307 195 11 119 410 84 381 4.86e-26 109
Msa1044520 AT3G12120.1 27.027 259 171 6 174 416 87 343 1.10e-20 94.0
Msa1044520 AT3G12120.2 27.027 259 171 6 174 416 87 343 1.10e-20 94.0
Msa1044520 AT2G29980.2 27.957 186 123 4 170 346 79 262 6.41e-18 84.3

Find 116 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTCATTACTCCAATTAA+AGG 0.166180 7_2:-2890214 Msa1044520:intron
ATAACTGTAACTTTATTTCT+AGG 0.169896 7_2:+2889588 None:intergenic
CATGGTTGGGCTATCACTTC+TGG 0.189410 7_2:-2887396 Msa1044520:CDS
TTCAATAGTATTGTTTAATA+TGG 0.198719 7_2:-2884344 Msa1044520:three_prime_UTR
CCAGTCTTGTAAATAATTAA+TGG 0.208810 7_2:+2887451 None:intergenic
CTCGTTAAGTTCACGGTTTA+TGG 0.224294 7_2:-2884277 Msa1044520:intron
ATAAATCCATCCAAGAAAAT+TGG 0.226172 7_2:-2884949 Msa1044520:CDS
TTTGTTGCCTGAACCCTTTA+TGG 0.227035 7_2:+2889628 None:intergenic
AAAGAATGAAAACCTTTAAT+TGG 0.227699 7_2:+2890202 None:intergenic
TGGACAGGGACTGCTGTAAC+TGG 0.230223 7_2:-2888845 Msa1044520:CDS
TTCACCCTCTTTATTTCATT+TGG 0.236235 7_2:+2887517 None:intergenic
ACAGGCTTATTTAGCCTAAA+AGG 0.252843 7_2:-2889663 Msa1044520:intron
GCTGCACAAGCACAGCTTAA+TGG 0.258653 7_2:-2885740 Msa1044520:CDS
GGGATATATGGTGTGGAATA+TGG 0.265223 7_2:+2885005 None:intergenic
TTGAGGAAAGCAATAATATA+TGG 0.266288 7_2:-2887743 Msa1044520:CDS
ATAAGAAAATCCACCTTCTT+AGG 0.267567 7_2:+2889423 None:intergenic
CTAATTGGACGAGATTCTTT+AGG 0.270288 7_2:+2884485 None:intergenic
GCCCCACAGTTCTTTGTTAT+AGG 0.274592 7_2:-2888690 Msa1044520:intron
TACTTCCTCTGGCTTGGGCT+TGG 0.300422 7_2:-2888865 Msa1044520:CDS
ATGCCTGATTATGCCTAATT+AGG 0.301317 7_2:-2884446 Msa1044520:exon
TTTGTTCTCAAATTCAAAAC+TGG 0.304706 7_2:+2890087 None:intergenic
TGGCCATCCAATTGCTATAA+AGG 0.318227 7_2:+2887471 None:intergenic
AAATGACAGTACACATTATT+AGG 0.321172 7_2:+2884056 None:intergenic
TGGATAAATTAGTGGCAAAA+AGG 0.327260 7_2:+2888602 None:intergenic
TATCGATCTGCGTCCACATT+TGG 0.337003 7_2:-2890370 None:intergenic
TAAATCCATCCAAGAAAATT+GGG 0.338050 7_2:-2884948 Msa1044520:CDS
AAGCCAACTTGGACCTAATT+AGG 0.340638 7_2:+2884433 None:intergenic
TCATGGGATGGATAAAATTC+TGG 0.348865 7_2:-2887426 Msa1044520:CDS
CCTCTGGCTTGGGCTTGGAC+AGG 0.352571 7_2:-2888860 Msa1044520:CDS
ATCTGCCACTTCCTATGCGC+TGG 0.359174 7_2:-2888921 Msa1044520:CDS
TATACGAGCTGTGGCAATTC+CGG 0.360109 7_2:-2889568 Msa1044520:CDS
GGTGATGGGTTAATCCATAA+AGG 0.366623 7_2:-2889642 Msa1044520:CDS
GTATCTACTTCCTCTGGCTT+GGG 0.367325 7_2:-2888870 Msa1044520:CDS
GGTATCTACTTCCTCTGGCT+TGG 0.369690 7_2:-2888871 Msa1044520:CDS
AAAGAGGGTGAAGATAAGTT+TGG 0.373712 7_2:-2887506 Msa1044520:CDS
ATACTGCTTGGCAGCCTGTT+TGG 0.377429 7_2:-2887793 Msa1044520:CDS
GATATGGTCCATTTCGTTGC+TGG 0.383059 7_2:-2887721 Msa1044520:CDS
TTCATTGTGCTTACCCTCAA+TGG 0.394646 7_2:-2885712 Msa1044520:intron
CTCTGGCTTGGGCTTGGACA+GGG 0.396821 7_2:-2888859 Msa1044520:CDS
TCAAACTCATCCTGCCAAAC+AGG 0.398783 7_2:+2887779 None:intergenic
CCATTAATTATTTACAAGAC+TGG 0.404814 7_2:-2887451 Msa1044520:CDS
AGTTTATCTTTCAGAGAGAC+TGG 0.407699 7_2:-2890294 Msa1044520:CDS
TATTTACAAGACTGGAATCA+TGG 0.410988 7_2:-2887443 Msa1044520:CDS
CATAACAAGGGGAAATTACT+TGG 0.411596 7_2:-2884304 Msa1044520:three_prime_UTR
ATGGTTGGGCTATCACTTCT+GGG 0.416170 7_2:-2887395 Msa1044520:intron
TGCTTGGCAGCCTGTTTGGC+AGG 0.421716 7_2:-2887789 Msa1044520:CDS
CGATCTGCGTCCACATTTGG+AGG 0.427034 7_2:-2890367 Msa1044520:five_prime_UTR
TTAAATCGCCATGGCTCATA+TGG 0.429770 7_2:+2888582 None:intergenic
GGACCTAATTAGGCATAATC+AGG 0.437567 7_2:+2884443 None:intergenic
CTGTACTCCGCACTTTCCAC+TGG 0.440501 7_2:+2889534 None:intergenic
TCCGCACTTTCCACTGGAGC+TGG 0.444789 7_2:+2889540 None:intergenic
TGGAGCTCTCGTTAAGTTCA+CGG 0.447567 7_2:-2884284 Msa1044520:three_prime_UTR
TGAATGAGGCTAGTTGGAAT+TGG 0.451740 7_2:-2884586 Msa1044520:CDS
GGTTAATCCATAAAGGGTTC+AGG 0.453241 7_2:-2889635 Msa1044520:CDS
CATTACTTCTCTTCCTAAGA+AGG 0.455511 7_2:-2889436 Msa1044520:intron
TCAAATTCAAAACTGGCCTC+TGG 0.458016 7_2:+2890094 None:intergenic
TCTGCCACTTCCTATGCGCT+GGG 0.465046 7_2:-2888920 Msa1044520:CDS
GGCTCATATGGATAAATTAG+TGG 0.465890 7_2:+2888594 None:intergenic
ATAGACATCCAGCAACGAAA+TGG 0.467653 7_2:+2887713 None:intergenic
TCCACTGGAGCTGGTTCTAC+CGG 0.468139 7_2:+2889549 None:intergenic
AAAGCAATAATATATGGATA+TGG 0.470604 7_2:-2887737 Msa1044520:CDS
AGTATCTGAATGAGGCTAGT+TGG 0.473014 7_2:-2884592 Msa1044520:CDS
GGACAGGGACTGCTGTAACT+GGG 0.473850 7_2:-2888844 Msa1044520:CDS
GAATATGGACATTAATATCA+TGG 0.492331 7_2:+2885020 None:intergenic
AAGCCCCAGCGCATAGGAAG+TGG 0.495190 7_2:+2888916 None:intergenic
GTGATGGGTTAATCCATAAA+GGG 0.495739 7_2:-2889641 Msa1044520:CDS
AATGTAACATTGTCTGGAAG+CGG 0.499209 7_2:+2889468 None:intergenic
TGCATGAAAATAAGCCAACT+TGG 0.501498 7_2:+2884422 None:intergenic
TTCTGGTTGATGCCATGGTT+GGG 0.509958 7_2:-2887409 Msa1044520:CDS
GCCCTGGTATCTACTTCCTC+TGG 0.511022 7_2:-2888876 Msa1044520:CDS
AGAAGACATTGTTGGAACTC+TGG 0.511878 7_2:-2888625 Msa1044520:CDS
GACAGGGACTGCTGTAACTG+GGG 0.512837 7_2:-2888843 Msa1044520:intron
TGCAGGGTTCTTCATTCCAG+AGG 0.514835 7_2:-2890110 Msa1044520:intron
TTATTTAGCCTAAAAGGTGA+TGG 0.518579 7_2:-2889657 Msa1044520:CDS
ATGCCTAATTAGGTCCAAGT+TGG 0.519972 7_2:-2884436 Msa1044520:exon
TTAGACCAAATGAAATAAAG+AGG 0.524360 7_2:-2887522 Msa1044520:CDS
GAGAGAGACTTGTTTGGTGT+GGG 0.525054 7_2:+2890342 None:intergenic
AGAGAGAGACTTGTTTGGTG+TGG 0.525514 7_2:+2890341 None:intergenic
AGCTCTGAGAGACATTCATT+AGG 0.527304 7_2:-2884220 Msa1044520:three_prime_UTR
AGCCAGAGGAAGTAGATACC+AGG 0.530649 7_2:+2888874 None:intergenic
TTTAGGAGCAACTTCATCAA+AGG 0.532877 7_2:+2884502 None:intergenic
TATTTAGCCTAAAAGGTGAT+GGG 0.537194 7_2:-2889656 Msa1044520:CDS
ATTCTGGTTGATGCCATGGT+TGG 0.540405 7_2:-2887410 Msa1044520:CDS
CATAAGAAGCCCCAGCGCAT+AGG 0.540899 7_2:+2888910 None:intergenic
TCGCCTTTATAGCAATTGGA+TGG 0.555332 7_2:-2887474 Msa1044520:CDS
ATTTACAAGACTGGAATCAT+GGG 0.557510 7_2:-2887442 Msa1044520:CDS
TTATGATTTCTAAAGCGCCC+TGG 0.568345 7_2:-2888892 Msa1044520:CDS
TAAAATTCTGGTTGATGCCA+TGG 0.571569 7_2:-2887414 Msa1044520:CDS
GATCTGCGTCCACATTTGGA+GGG 0.574640 7_2:-2890366 Msa1044520:five_prime_UTR
ATTTCTGCTCATTACTCACC+TGG 0.575772 7_2:-2890063 Msa1044520:intron
TCCGGTAGAACCAGCTCCAG+TGG 0.580163 7_2:-2889550 Msa1044520:CDS
GCTGGATGTCTATAGCTCAC+TGG 0.582755 7_2:-2887703 Msa1044520:intron
AAATTGGTAGAAGACATTGT+TGG 0.585428 7_2:-2888633 Msa1044520:CDS
ATCTGCGTCCACATTTGGAG+GGG 0.586870 7_2:-2890365 Msa1044520:five_prime_UTR
GTTTATCTTTCAGAGAGACT+GGG 0.588727 7_2:-2890293 Msa1044520:CDS
CATCCAAGAAAATTGGGGAA+AGG 0.590847 7_2:-2884942 Msa1044520:intron
TAATTTATCCATATGAGCCA+TGG 0.590928 7_2:-2888590 Msa1044520:CDS
GCCAGAGGAAGTAGATACCA+GGG 0.594327 7_2:+2888875 None:intergenic
GCTGCTCGTAAATTATAGCT+TGG 0.594700 7_2:+2884974 None:intergenic
GGTTGAAAGAAGATACTGCT+TGG 0.603426 7_2:-2887805 Msa1044520:CDS
TTGTCATGCTTAAATCGCCA+TGG 0.610770 7_2:+2888573 None:intergenic
ATGCATAAACAGATGTCTAA+CGG 0.613102 7_2:-2884125 Msa1044520:three_prime_UTR
AGATTGATGATGTTAAAGCA+TGG 0.613392 7_2:-2888958 Msa1044520:CDS
TAGACCAAATGAAATAAAGA+GGG 0.614606 7_2:-2887521 Msa1044520:CDS
TTGGAGTAATGAATTTGCAG+AGG 0.616285 7_2:+2890221 None:intergenic
AAACAGCTAGCAGAACGCTA+TGG 0.617716 7_2:-2889510 Msa1044520:CDS
GGTGTGGGCCCCTCCAAATG+TGG 0.623715 7_2:+2890357 None:intergenic
AGTTACAGTTATACGAGCTG+TGG 0.623877 7_2:-2889577 Msa1044520:CDS
CCTGTCCAAGCCCAAGCCAG+AGG 0.628134 7_2:+2888860 None:intergenic
ACCAGCTCCAGTGGAAAGTG+CGG 0.631323 7_2:-2889541 Msa1044520:CDS
AAATCCATCCAAGAAAATTG+GGG 0.635467 7_2:-2884947 Msa1044520:CDS
CAGAAGTGATAGCCCAACCA+TGG 0.650623 7_2:+2887397 None:intergenic
ATAGATGAGCACTTTCACCA+TGG 0.653236 7_2:-2885813 Msa1044520:intron
CTGCCACTTCCTATGCGCTG+GGG 0.655654 7_2:-2888919 Msa1044520:CDS
ACAAGACTGGAATCATGGGA+TGG 0.658676 7_2:-2887438 Msa1044520:CDS
TGGTGCAGTATGATGTACCA+TGG 0.715874 7_2:+2885796 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATAATTATTTTATTAA+AGG - chr7_2:2888268-2888287 Msa1044520:intron 0.0%
!! ATGAAAAATCATTATTTAAA+AGG + chr7_2:2884725-2884744 None:intergenic 10.0%
!!! TAATCATTTTAAATTTTTGA+AGG - chr7_2:2885431-2885450 Msa1044520:intron 10.0%
!! CTGAAATATATATTAATAAT+GGG + chr7_2:2886038-2886057 None:intergenic 10.0%
!! ACTGAAATATATATTAATAA+TGG + chr7_2:2886039-2886058 None:intergenic 10.0%
!!! ATTCATTTTAAAGATAAAAA+TGG - chr7_2:2887937-2887956 Msa1044520:intron 10.0%
!!! GAAAGTTTTTTAAAAAAAAA+AGG + chr7_2:2888442-2888461 None:intergenic 10.0%
!!! AAAGATAAACTCATTTTATT+TGG + chr7_2:2884115-2884134 None:intergenic 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG - chr7_2:2884659-2884678 Msa1044520:intron 15.0%
!! AGAAAAACAAAAAAATAGAA+GGG + chr7_2:2885904-2885923 None:intergenic 15.0%
!! TAGAAAAACAAAAAAATAGA+AGG + chr7_2:2885905-2885924 None:intergenic 15.0%
!!! TTCTATTTTTTTGTTTTTCT+AGG - chr7_2:2885904-2885923 Msa1044520:intron 15.0%
!! ATAAAAAAAGATGAATTCAA+AGG - chr7_2:2886230-2886249 Msa1044520:intron 15.0%
!! AAATAAAAACAAAAAAGACA+CGG + chr7_2:2887088-2887107 None:intergenic 15.0%
!!! TTGTTTTTATTTCTTTTGTT+TGG - chr7_2:2887096-2887115 Msa1044520:intron 15.0%
!! ACAATCTTATATTAAAAGAA+TGG - chr7_2:2887287-2887306 Msa1044520:intron 15.0%
!! TAAAAAAAATCAATGAAGAT+AGG + chr7_2:2888058-2888077 None:intergenic 15.0%
!!! TTTTACATTCGTTTAATAAT+AGG - chr7_2:2888073-2888092 Msa1044520:intron 15.0%
!! ACTACACAATTTATTAATTA+TGG - chr7_2:2888217-2888236 Msa1044520:intron 15.0%
!! TTATGGATAAATATAACATT+AGG - chr7_2:2888234-2888253 Msa1044520:intron 15.0%
!!! TTTTTTAAAAAACTTTCTAG+AGG - chr7_2:2888445-2888464 Msa1044520:intron 15.0%
!!! ACAGTCTAAATATTTTTTTT+GGG + chr7_2:2888510-2888529 None:intergenic 15.0%
!! TTCAATAGTATTGTTTAATA+TGG - chr7_2:2890074-2890093 Msa1044520:CDS 15.0%
!! AAATTCATTACTCCAATTAA+AGG - chr7_2:2884204-2884223 Msa1044520:three_prime_UTR 20.0%
!! AAAGAATGAAAACCTTTAAT+TGG + chr7_2:2884219-2884238 None:intergenic 20.0%
!! GTATTTATTTAAGAGTTGAA+AGG + chr7_2:2884253-2884272 None:intergenic 20.0%
!!! CAAAATATCTTAGCTTTATA+CGG - chr7_2:2884272-2884291 Msa1044520:intron 20.0%
!! GCAAAATAGTAAAGTAATTA+AGG + chr7_2:2884396-2884415 None:intergenic 20.0%
!!! ATAACTGTAACTTTATTTCT+AGG + chr7_2:2884833-2884852 None:intergenic 20.0%
!!! ATCATTAAGTTTTAGAACAT+AGG - chr7_2:2885051-2885070 Msa1044520:intron 20.0%
!!! TCATTAAGTTTTAGAACATA+GGG - chr7_2:2885052-2885071 Msa1044520:intron 20.0%
!!! GTAATTTTTTGCCAAAAATA+TGG + chr7_2:2885324-2885343 None:intergenic 20.0%
!!! ATCATTTTCAACAAACAAAT+TGG - chr7_2:2885769-2885788 Msa1044520:CDS 20.0%
!!! TATATTAATAATGGGTTTTC+AGG + chr7_2:2886030-2886049 None:intergenic 20.0%
!! AAAGCAATAATATATGGATA+TGG - chr7_2:2886681-2886700 Msa1044520:intron 20.0%
!! AACAATATAAAAACGTTTCA+AGG + chr7_2:2886746-2886765 None:intergenic 20.0%
!!! TTTTATTTCTTTTGTTTGGA+TGG - chr7_2:2887100-2887119 Msa1044520:intron 20.0%
!! TTTATGTATTGAAGTAGAAT+TGG - chr7_2:2887220-2887239 Msa1044520:intron 20.0%
!! ACTATATATACATTAAAGCT+CGG + chr7_2:2887259-2887278 None:intergenic 20.0%
!! TTTAATATAAGATTGTGAGT+GGG + chr7_2:2887283-2887302 None:intergenic 20.0%
!!! TTTTAATATAAGATTGTGAG+TGG + chr7_2:2887284-2887303 None:intergenic 20.0%
!!! TTTTAACCTACTATAAGATA+TGG + chr7_2:2887564-2887583 None:intergenic 20.0%
!!! ACTTTATATTTTTACTCTGT+TGG - chr7_2:2888179-2888198 Msa1044520:intron 20.0%
!!! AGTCTAAATATTTTTTTTGG+GGG + chr7_2:2888508-2888527 None:intergenic 20.0%
!!! CAGTCTAAATATTTTTTTTG+GGG + chr7_2:2888509-2888528 None:intergenic 20.0%
!!! CACAGTCTAAATATTTTTTT+TGG + chr7_2:2888511-2888530 None:intergenic 20.0%
!! AAAAAATACATTACCATTGA+GGG + chr7_2:2888722-2888741 None:intergenic 20.0%
!! TAAAATATGATCAGAGAAAA+TGG - chr7_2:2888960-2888979 Msa1044520:CDS 20.0%
!! TAAGCATTAAAACATTTCTA+AGG + chr7_2:2889138-2889157 None:intergenic 20.0%
!! TCTTTCACAAATGTAATATA+AGG + chr7_2:2889218-2889237 None:intergenic 20.0%
!!! AAATTATAGCTTGGTATTTT+CGG + chr7_2:2889438-2889457 None:intergenic 20.0%
!!! TTATATCGAAAAGTATGTTT+TGG + chr7_2:2889629-2889648 None:intergenic 20.0%
!!! AAACTTTCAAATCTTTTATC+TGG + chr7_2:2889654-2889673 None:intergenic 20.0%
!!! ATGACATTTTAGCTAATTAT+TGG - chr7_2:2889778-2889797 Msa1044520:intron 20.0%
!! ACTTTCTTCAAAAATCTAAT+TGG + chr7_2:2889951-2889970 None:intergenic 20.0%
!! TTGTTATGTGATATGAAAAA+TGG + chr7_2:2890102-2890121 None:intergenic 20.0%
!!! ATTTTTCATATCACATAACA+AGG - chr7_2:2890101-2890120 Msa1044520:CDS 20.0%
!!! TTTTTCATATCACATAACAA+GGG - chr7_2:2890102-2890121 Msa1044520:CDS 20.0%
! CTCAATTTCATCTCAAAAAA+TGG - chr7_2:2884168-2884187 Msa1044520:three_prime_UTR 25.0%
! TTTGTTCTCAAATTCAAAAC+TGG + chr7_2:2884334-2884353 None:intergenic 25.0%
! GCAATTATGTATGAATGATA+TGG - chr7_2:2884553-2884572 Msa1044520:CDS 25.0%
! TTTGAGAAAATGACATAACT+CGG + chr7_2:2884652-2884671 None:intergenic 25.0%
!! TCTTTTAATGTAACATTGTC+TGG + chr7_2:2884959-2884978 None:intergenic 25.0%
! AAAGTGAGAAAAAACAAGAA+TGG + chr7_2:2885301-2885320 None:intergenic 25.0%
!! TTTCTCACTTTCCATATTTT+TGG - chr7_2:2885310-2885329 Msa1044520:intron 25.0%
! ATTATTACAAAAAGGAAGAC+AGG + chr7_2:2885366-2885385 None:intergenic 25.0%
!! TCCTTTTTGTAATAATTCCA+TGG - chr7_2:2885370-2885389 Msa1044520:intron 25.0%
! ACCATGGAATTATTACAAAA+AGG + chr7_2:2885374-2885393 None:intergenic 25.0%
! ATATTTCAGTAGCTTAATCA+AGG - chr7_2:2886049-2886068 Msa1044520:intron 25.0%
! TATTTCAGTAGCTTAATCAA+GGG - chr7_2:2886050-2886069 Msa1044520:intron 25.0%
! TAAATCATCTCTAATGATAC+AGG - chr7_2:2886592-2886611 Msa1044520:intron 25.0%
! ATTATTGCTTTCCTCAAAAA+TGG + chr7_2:2886672-2886691 None:intergenic 25.0%
! TTGAGGAAAGCAATAATATA+TGG - chr7_2:2886675-2886694 Msa1044520:intron 25.0%
!! ACGTTTTTATATTGTTCCTA+AGG - chr7_2:2886750-2886769 Msa1044520:intron 25.0%
! AAGTTAATGAAATAGTCCTT+AGG + chr7_2:2886769-2886788 None:intergenic 25.0%
!!! AATTAGTTTGCATCAAGATA+CGG + chr7_2:2886839-2886858 None:intergenic 25.0%
! TTAGACCAAATGAAATAAAG+AGG - chr7_2:2886896-2886915 Msa1044520:intron 25.0%
! TAGACCAAATGAAATAAAGA+GGG - chr7_2:2886897-2886916 Msa1044520:intron 25.0%
!! CCAGTCTTGTAAATAATTAA+TGG + chr7_2:2886970-2886989 None:intergenic 25.0%
! CCATTAATTATTTACAAGAC+TGG - chr7_2:2886967-2886986 Msa1044520:intron 25.0%
! ATAAACTACGTGTAATATAG+TGG + chr7_2:2887433-2887452 None:intergenic 25.0%
! CAACAAATTTAGTGACTTAA+GGG + chr7_2:2887477-2887496 None:intergenic 25.0%
! TCAACAAATTTAGTGACTTA+AGG + chr7_2:2887478-2887497 None:intergenic 25.0%
! AAGAGATATTTAGAGGTAAA+TGG + chr7_2:2887593-2887612 None:intergenic 25.0%
! GACTATTAAGAGATATTTAG+AGG + chr7_2:2887600-2887619 None:intergenic 25.0%
! CTAAATATCTCTTAATAGTC+TGG - chr7_2:2887600-2887619 Msa1044520:intron 25.0%
! CCACTATAGAAAAAGATAAT+AGG + chr7_2:2887750-2887769 None:intergenic 25.0%
!! CCTATTATCTTTTTCTATAG+TGG - chr7_2:2887747-2887766 Msa1044520:CDS 25.0%
! TTCAAGTATTAAACAACTCA+AGG - chr7_2:2887976-2887995 Msa1044520:intron 25.0%
!! AAGTGTAAAATAAAGTGTCT+TGG - chr7_2:2888291-2888310 Msa1044520:intron 25.0%
! TTACATGAATGCTTTCAAAT+TGG + chr7_2:2888317-2888336 None:intergenic 25.0%
! TAACCTGATAACATATTTAG+AGG + chr7_2:2888346-2888365 None:intergenic 25.0%
!!! TCTAAATATTTTTTTTGGGG+GGG + chr7_2:2888506-2888525 None:intergenic 25.0%
!!! GTCTAAATATTTTTTTTGGG+GGG + chr7_2:2888507-2888526 None:intergenic 25.0%
! TCATGATGTAATTAATACTG+TGG - chr7_2:2888546-2888565 Msa1044520:intron 25.0%
! CATGATGTAATTAATACTGT+GGG - chr7_2:2888547-2888566 Msa1044520:intron 25.0%
! GAAAAAATACATTACCATTG+AGG + chr7_2:2888723-2888742 None:intergenic 25.0%
!! ATTTTTCTTTCATTGCTCTT+TGG - chr7_2:2888832-2888851 Msa1044520:intron 25.0%
!!! ATGAGTGTTATTTTATTCTG+TGG - chr7_2:2888857-2888876 Msa1044520:CDS 25.0%
!! TTTGTCCTTTTTCCTTAATA+CGG + chr7_2:2888931-2888950 None:intergenic 25.0%
! ACATACAAATCCATAATTGA+CGG - chr7_2:2889073-2889092 Msa1044520:intron 25.0%
! ACTTAAAGTTAACAATTCAC+AGG + chr7_2:2889191-2889210 None:intergenic 25.0%
! GAATATGGACATTAATATCA+TGG + chr7_2:2889401-2889420 None:intergenic 25.0%
!! AATTATAGCTTGGTATTTTC+GGG + chr7_2:2889437-2889456 None:intergenic 25.0%
!!! ATTTTCTTGGATGGATTTAT+GGG + chr7_2:2889469-2889488 None:intergenic 25.0%
!!! AATTTTCTTGGATGGATTTA+TGG + chr7_2:2889470-2889489 None:intergenic 25.0%
! ATAAATCCATCCAAGAAAAT+TGG - chr7_2:2889469-2889488 Msa1044520:CDS 25.0%
! TAAATCCATCCAAGAAAATT+GGG - chr7_2:2889470-2889489 Msa1044520:CDS 25.0%
! TAATATAAGACTGCAAAAAG+TGG + chr7_2:2889565-2889584 None:intergenic 25.0%
!!! TCATCTAGAAATTTTAACCA+TGG + chr7_2:2889762-2889781 None:intergenic 25.0%
!!! TTGGTATTATTTTGTTGTGT+TGG - chr7_2:2889797-2889816 Msa1044520:intron 25.0%
!! TTTTATGTATCAGAGTAGTT+AGG - chr7_2:2890024-2890043 Msa1044520:intron 25.0%
!! TTTTCATATCACATAACAAG+GGG - chr7_2:2890103-2890122 Msa1044520:CDS 25.0%
! AAATGACAGTACACATTATT+AGG + chr7_2:2890365-2890384 None:intergenic 25.0%
TTCAATTCTTTCTCATCTTG+TGG - chr7_2:2884426-2884445 Msa1044520:three_prime_UTR 30.0%
! TTTTTCATTCTTTGTGTCAC+AGG - chr7_2:2884737-2884756 Msa1044520:intron 30.0%
TTATTTAGCCTAAAAGGTGA+TGG - chr7_2:2884761-2884780 Msa1044520:intron 30.0%
TATTTAGCCTAAAAGGTGAT+GGG - chr7_2:2884762-2884781 Msa1044520:intron 30.0%
ATAAGAAAATCCACCTTCTT+AGG + chr7_2:2884998-2885017 None:intergenic 30.0%
TTCTCCTAAATAACACTTTC+TGG - chr7_2:2885108-2885127 Msa1044520:intron 30.0%
ATGTACACAACTATGCTATA+AGG + chr7_2:2885172-2885191 None:intergenic 30.0%
TACATGATTATTCTGTCTCT+AGG - chr7_2:2885275-2885294 Msa1044520:intron 30.0%
ATTACACTAACCAAACAGAA+AGG - chr7_2:2885339-2885358 Msa1044520:intron 30.0%
AAAATGAAATCTGAACACCA+TGG + chr7_2:2885390-2885409 None:intergenic 30.0%
!! AGATTGATGATGTTAAAGCA+TGG - chr7_2:2885460-2885479 Msa1044520:intron 30.0%
AGCAGTAACGAGTAATTATA+AGG + chr7_2:2885620-2885639 None:intergenic 30.0%
AAGATCTTGGACATATGATT+TGG - chr7_2:2885675-2885694 Msa1044520:intron 30.0%
AGATCTTGGACATATGATTT+GGG - chr7_2:2885676-2885695 Msa1044520:intron 30.0%
AAATTGGTAGAAGACATTGT+TGG - chr7_2:2885785-2885804 Msa1044520:CDS 30.0%
TGGATAAATTAGTGGCAAAA+AGG + chr7_2:2885819-2885838 None:intergenic 30.0%
TAATTTATCCATATGAGCCA+TGG - chr7_2:2885828-2885847 Msa1044520:intron 30.0%
TGCAAAAACAAACATGTAAG+TGG - chr7_2:2885874-2885893 Msa1044520:intron 30.0%
AATGTATGTTATAGACAGAC+TGG - chr7_2:2885953-2885972 Msa1044520:intron 30.0%
GAGTTATATCAAGTACACAT+TGG + chr7_2:2886176-2886195 None:intergenic 30.0%
CTTGATATAACTCGCAAATT+AGG - chr7_2:2886183-2886202 Msa1044520:intron 30.0%
TCATTTATGCATTTGTTCCT+AGG + chr7_2:2886295-2886314 None:intergenic 30.0%
CATGTGATTCTGATATATGA+GGG + chr7_2:2886338-2886357 None:intergenic 30.0%
GATGCAAACTAATTTCTTTC+AGG - chr7_2:2886845-2886864 Msa1044520:intron 30.0%
! CAAACTAATTTCTTTCAGGT+TGG - chr7_2:2886849-2886868 Msa1044520:intron 30.0%
! TTCACCCTCTTTATTTCATT+TGG + chr7_2:2886904-2886923 None:intergenic 30.0%
TATTTACAAGACTGGAATCA+TGG - chr7_2:2886975-2886994 Msa1044520:intron 30.0%
ATTTACAAGACTGGAATCAT+GGG - chr7_2:2886976-2886995 Msa1044520:intron 30.0%
AAAATCCAGTGACTGTTTAT+TGG + chr7_2:2887161-2887180 None:intergenic 30.0%
TTTAAAGAGTAATCAGTCAC+TGG - chr7_2:2887185-2887204 Msa1044520:intron 30.0%
GAACAATATAAAACTATCCC+TGG - chr7_2:2887309-2887328 Msa1044520:intron 30.0%
!! TCATCTTGCTCTAAATTTTC+CGG + chr7_2:2887354-2887373 None:intergenic 30.0%
! GAAAATTTAGAGCAAGATGA+GGG - chr7_2:2887354-2887373 Msa1044520:intron 30.0%
AATTAGAACCATCGTTTGTA+GGG + chr7_2:2887401-2887420 None:intergenic 30.0%
AAATTAGAACCATCGTTTGT+AGG + chr7_2:2887402-2887421 None:intergenic 30.0%
GTGATTCCATATCTTATAGT+AGG - chr7_2:2887555-2887574 Msa1044520:intron 30.0%
AGATAATAGGATACTGTCTT+GGG + chr7_2:2887737-2887756 None:intergenic 30.0%
AAGATAATAGGATACTGTCT+TGG + chr7_2:2887738-2887757 None:intergenic 30.0%
TTATAGTGAAGACAACCTAT+AGG + chr7_2:2887780-2887799 None:intergenic 30.0%
ATGCATTTATAGCAGCTATA+GGG + chr7_2:2887805-2887824 None:intergenic 30.0%
AATGCATTTATAGCAGCTAT+AGG + chr7_2:2887806-2887825 None:intergenic 30.0%
AAGCCTCTAAATATGTTATC+AGG - chr7_2:2888340-2888359 Msa1044520:intron 30.0%
!! AACGGTTTGGTAAAACATAA+AGG + chr7_2:2888376-2888395 None:intergenic 30.0%
! TTATGTTTTACCAAACCGTT+AGG - chr7_2:2888376-2888395 Msa1044520:intron 30.0%
!!! ATTTTTCAGGTACAACCTAA+CGG + chr7_2:2888394-2888413 None:intergenic 30.0%
!! AGCATGATAACGTATTTTTC+AGG + chr7_2:2888407-2888426 None:intergenic 30.0%
!!! TAAATATTTTTTTTGGGGGG+GGG + chr7_2:2888504-2888523 None:intergenic 30.0%
!!! CTAAATATTTTTTTTGGGGG+GGG + chr7_2:2888505-2888524 None:intergenic 30.0%
! CATTCTTCTGAGTTTTTGAA+TGG + chr7_2:2888654-2888673 None:intergenic 30.0%
CATTCAAAAACTCAGAAGAA+TGG - chr7_2:2888652-2888671 Msa1044520:CDS 30.0%
TCGAGAATGTTTACTATCTA+CGG - chr7_2:2888987-2889006 Msa1044520:intron 30.0%
TTTGAAGAAATCATGAGAAG+GGG + chr7_2:2889291-2889310 None:intergenic 30.0%
! CTTTGAAGAAATCATGAGAA+GGG + chr7_2:2889292-2889311 None:intergenic 30.0%
! ACTTTGAAGAAATCATGAGA+AGG + chr7_2:2889293-2889312 None:intergenic 30.0%
! ATATAGCGGTTAGTCAATAT+TGG + chr7_2:2889342-2889361 None:intergenic 30.0%
GAAAAGAAGTCAGAATATAG+CGG + chr7_2:2889356-2889375 None:intergenic 30.0%
! ATTATAGCTTGGTATTTTCG+GGG + chr7_2:2889436-2889455 None:intergenic 30.0%
AAATCCATCCAAGAAAATTG+GGG - chr7_2:2889471-2889490 Msa1044520:CDS 30.0%
TATGCTTCATGAAAGAAATG+AGG - chr7_2:2889525-2889544 Msa1044520:CDS 30.0%
!! TATCGAAAAGTATGTTTTGG+TGG + chr7_2:2889626-2889645 None:intergenic 30.0%
CTAACTAAACTCTAATTCCA+TGG - chr7_2:2889742-2889761 Msa1044520:intron 30.0%
GGAAAAATAGTATCTGAATG+AGG - chr7_2:2889818-2889837 Msa1044520:intron 30.0%
! ATCTGAACGTGATTTTTGTT+AGG - chr7_2:2890241-2890260 Msa1044520:CDS 30.0%
! TCTGAACGTGATTTTTGTTA+GGG - chr7_2:2890242-2890261 Msa1044520:CDS 30.0%
ATGCATAAACAGATGTCTAA+CGG - chr7_2:2890293-2890312 Msa1044520:CDS 30.0%
! CTAACGGATAAAAAATCATG+TGG - chr7_2:2890309-2890328 Msa1044520:exon 30.0%
AGTTTATCTTTCAGAGAGAC+TGG - chr7_2:2884124-2884143 Msa1044520:three_prime_UTR 35.0%
GTTTATCTTTCAGAGAGACT+GGG - chr7_2:2884125-2884144 Msa1044520:three_prime_UTR 35.0%
TTGGAGTAATGAATTTGCAG+AGG + chr7_2:2884200-2884219 None:intergenic 35.0%
AAGAGTTGAAAGGAATGAGA+GGG + chr7_2:2884243-2884262 None:intergenic 35.0%
TAAGAGTTGAAAGGAATGAG+AGG + chr7_2:2884244-2884263 None:intergenic 35.0%
!!! ACGGTTTTGTTTGTTTTTGC+AGG - chr7_2:2884291-2884310 Msa1044520:three_prime_UTR 35.0%
!!! CGGTTTTGTTTGTTTTTGCA+GGG - chr7_2:2884292-2884311 Msa1044520:three_prime_UTR 35.0%
AGGAAGATGAATAGAATACC+AGG + chr7_2:2884376-2884395 None:intergenic 35.0%
!! AAAATGACATAACTCGGTGT+CGG + chr7_2:2884646-2884665 None:intergenic 35.0%
TGTCTATGTATGTGCTTCAT+AGG - chr7_2:2884697-2884716 Msa1044520:intron 35.0%
ACAGGCTTATTTAGCCTAAA+AGG - chr7_2:2884755-2884774 Msa1044520:intron 35.0%
!! GTGATGGGTTAATCCATAAA+GGG - chr7_2:2884777-2884796 Msa1044520:intron 35.0%
AATGTAACATTGTCTGGAAG+CGG + chr7_2:2884953-2884972 None:intergenic 35.0%
CATTACTTCTCTTCCTAAGA+AGG - chr7_2:2884982-2885001 Msa1044520:CDS 35.0%
!! CACACCAGAAAGTGTTATTT+AGG + chr7_2:2885115-2885134 None:intergenic 35.0%
!! TTTCTGGTGTGTTTTCTTCT+TGG - chr7_2:2885124-2885143 Msa1044520:intron 35.0%
! TTCTGGTGTGTTTTCTTCTT+GGG - chr7_2:2885125-2885144 Msa1044520:intron 35.0%
CTTCTTGGGTAAGGATATTA+AGG - chr7_2:2885139-2885158 Msa1044520:intron 35.0%
ATATGTCCAAGATCTTCAAG+AGG + chr7_2:2885671-2885690 None:intergenic 35.0%
TCCTATAACAAAGAACTGTG+GGG + chr7_2:2885732-2885751 None:intergenic 35.0%
GTCCTATAACAAAGAACTGT+GGG + chr7_2:2885733-2885752 None:intergenic 35.0%
TGTCCTATAACAAAGAACTG+TGG + chr7_2:2885734-2885753 None:intergenic 35.0%
GGCTCATATGGATAAATTAG+TGG + chr7_2:2885827-2885846 None:intergenic 35.0%
AATGCATGAAGTGTGAAACT+TGG - chr7_2:2885991-2886010 Msa1044520:intron 35.0%
ACACATTTAACAGAACGATG+TGG + chr7_2:2886120-2886139 None:intergenic 35.0%
AACTCGCAAATTAGGAACAA+TGG - chr7_2:2886191-2886210 Msa1044520:intron 35.0%
ATTCAAAGGCTCTACAACAA+AGG - chr7_2:2886244-2886263 Msa1044520:intron 35.0%
ATATATGAGGGAGAGAGAAT+AGG + chr7_2:2886326-2886345 None:intergenic 35.0%
CCATGTGATTCTGATATATG+AGG + chr7_2:2886339-2886358 None:intergenic 35.0%
CCTCATATATCAGAATCACA+TGG - chr7_2:2886336-2886355 Msa1044520:intron 35.0%
! GTGCTGAAAGTGTAAAATTC+AGG - chr7_2:2886466-2886485 Msa1044520:intron 35.0%
!! TTGAGTCAAGTCCATTTTTG+AGG - chr7_2:2886658-2886677 Msa1044520:intron 35.0%
AAAGAGGGTGAAGATAAGTT+TGG - chr7_2:2886912-2886931 Msa1044520:intron 35.0%
! GTTTTCGCCTTTATAGCAAT+TGG - chr7_2:2886940-2886959 Msa1044520:intron 35.0%
TCATGGGATGGATAAAATTC+TGG - chr7_2:2886992-2887011 Msa1044520:intron 35.0%
! TAAAATTCTGGTTGATGCCA+TGG - chr7_2:2887004-2887023 Msa1044520:intron 35.0%
! GGAAAATTTAGAGCAAGATG+AGG - chr7_2:2887353-2887372 Msa1044520:intron 35.0%
! GTCTGGTCTATAGTTTTTCT+TGG - chr7_2:2887617-2887636 Msa1044520:intron 35.0%
CATAGGAGCAACAATAAAGA+GGG + chr7_2:2887687-2887706 None:intergenic 35.0%
TCATAGGAGCAACAATAAAG+AGG + chr7_2:2887688-2887707 None:intergenic 35.0%
CATGTTAGGAGAATACTCAT+AGG + chr7_2:2887704-2887723 None:intergenic 35.0%
GATAATAGGATACTGTCTTG+GGG + chr7_2:2887736-2887755 None:intergenic 35.0%
! TATAGTGGAAGCTATCCTAT+AGG - chr7_2:2887762-2887781 Msa1044520:CDS 35.0%
TGCATTTATAGCAGCTATAG+GGG + chr7_2:2887804-2887823 None:intergenic 35.0%
GCTGCTATAAATGCATTCAA+TGG - chr7_2:2887809-2887828 Msa1044520:intron 35.0%
!!! AAATATTTTTTTTGGGGGGG+GGG + chr7_2:2888503-2888522 None:intergenic 35.0%
AAGGATACCTCTTAGACATA+TGG + chr7_2:2888573-2888592 None:intergenic 35.0%
CATCTATGATTGAGAGCAAA+AGG + chr7_2:2888592-2888611 None:intergenic 35.0%
! GAGTTTTTGAATGGTATGTG+TGG + chr7_2:2888645-2888664 None:intergenic 35.0%
! ACATCCATGCGTCTTATTAA+TGG + chr7_2:2888778-2888797 None:intergenic 35.0%
ATTAATAAGACGCATGGATG+TGG - chr7_2:2888777-2888796 Msa1044520:intron 35.0%
TTTGCATTTGCACCGTATTA+AGG - chr7_2:2888916-2888935 Msa1044520:CDS 35.0%
TTGCACCGTATTAAGGAAAA+AGG - chr7_2:2888923-2888942 Msa1044520:CDS 35.0%
AGAATGTTTACTATCTACGG+TGG - chr7_2:2888990-2889009 Msa1044520:intron 35.0%
ACAAATCCATAATTGACGGA+TGG - chr7_2:2889077-2889096 Msa1044520:intron 35.0%
AAGAGATTTACATGGACATC+GGG + chr7_2:2889167-2889186 None:intergenic 35.0%
CAAGAGATTTACATGGACAT+CGG + chr7_2:2889168-2889187 None:intergenic 35.0%
TCATGATTTCTTCAAAGTGC+AGG - chr7_2:2889295-2889314 Msa1044520:intron 35.0%
! TTCTGACTTCTTTTCTGTAC+AGG - chr7_2:2889361-2889380 Msa1044520:intron 35.0%
!! TTGGTATTTTCGGGGATATA+TGG + chr7_2:2889428-2889447 None:intergenic 35.0%
! TTACCTTTCCCCAATTTTCT+TGG + chr7_2:2889482-2889501 None:intergenic 35.0%
CTGCAAAAAGTGGAAGAAAA+TGG + chr7_2:2889555-2889574 None:intergenic 35.0%
TTTAGGAGCAACTTCATCAA+AGG + chr7_2:2889919-2889938 None:intergenic 35.0%
CTAATTGGACGAGATTCTTT+AGG + chr7_2:2889936-2889955 None:intergenic 35.0%
ATGCCTGATTATGCCTAATT+AGG - chr7_2:2889972-2889991 Msa1044520:intron 35.0%
TGCATGAAAATAAGCCAACT+TGG + chr7_2:2889999-2890018 None:intergenic 35.0%
CATAACAAGGGGAAATTACT+TGG - chr7_2:2890114-2890133 Msa1044520:intron 35.0%
! TCAAATTCAAAACTGGCCTC+TGG + chr7_2:2884327-2884346 None:intergenic 40.0%
ATTTCTGCTCATTACTCACC+TGG - chr7_2:2884355-2884374 Msa1044520:three_prime_UTR 40.0%
TGCTAATGCATGCAATGCAA+TGG - chr7_2:2884502-2884521 Msa1044520:CDS 40.0%
GCTAATGCATGCAATGCAAT+GGG - chr7_2:2884503-2884522 Msa1044520:CDS 40.0%
CTAATGCATGCAATGCAATG+GGG - chr7_2:2884504-2884523 Msa1044520:CDS 40.0%
!! GATTAGACGTGTACTGGTTT+CGG - chr7_2:2884607-2884626 Msa1044520:intron 40.0%
! GGATTAACCCATCACCTTTT+AGG + chr7_2:2884772-2884791 None:intergenic 40.0%
!! GGTGATGGGTTAATCCATAA+AGG - chr7_2:2884776-2884795 Msa1044520:intron 40.0%
GGTTAATCCATAAAGGGTTC+AGG - chr7_2:2884783-2884802 Msa1044520:intron 40.0%
TTTGTTGCCTGAACCCTTTA+TGG + chr7_2:2884793-2884812 None:intergenic 40.0%
AGTTACAGTTATACGAGCTG+TGG - chr7_2:2884841-2884860 Msa1044520:intron 40.0%
!!! CGCTATGGTTTTGAGCAAAT+CGG - chr7_2:2884923-2884942 Msa1044520:intron 40.0%
TACTTCTCTTCCTAAGAAGG+TGG - chr7_2:2884985-2885004 Msa1044520:CDS 40.0%
! GTGTGTTTTCTTCTTGGGTA+AGG - chr7_2:2885130-2885149 Msa1044520:intron 40.0%
CTTCTCTCTCTCATAAAGTG+TGG + chr7_2:2885232-2885251 None:intergenic 40.0%
CACACTTTATGAGAGAGAGA+AGG - chr7_2:2885230-2885249 Msa1044520:intron 40.0%
!! TTATGATTTCTAAAGCGCCC+TGG - chr7_2:2885526-2885545 Msa1044520:intron 40.0%
TCTTCTCCTCTTGAAGATCT+TGG - chr7_2:2885662-2885681 Msa1044520:intron 40.0%
AGAAGACATTGTTGGAACTC+TGG - chr7_2:2885793-2885812 Msa1044520:CDS 40.0%
TTAAATCGCCATGGCTCATA+TGG + chr7_2:2885839-2885858 None:intergenic 40.0%
TTGTCATGCTTAAATCGCCA+TGG + chr7_2:2885848-2885867 None:intergenic 40.0%
TCAGAATCACATGGAATCCA+TGG - chr7_2:2886345-2886364 Msa1044520:intron 40.0%
CCATATGGAAAGTCTATACG+AGG + chr7_2:2886422-2886441 None:intergenic 40.0%
CCTCGTATAGACTTTCCATA+TGG - chr7_2:2886419-2886438 Msa1044520:intron 40.0%
CGTATAGACTTTCCATATGG+TGG - chr7_2:2886422-2886441 Msa1044520:intron 40.0%
ATAGAAGCAACTCCACCATA+TGG + chr7_2:2886437-2886456 None:intergenic 40.0%
GGTTGAAAGAAGATACTGCT+TGG - chr7_2:2886613-2886632 Msa1044520:intron 40.0%
ATAGACATCCAGCAACGAAA+TGG + chr7_2:2886708-2886727 None:intergenic 40.0%
ATGTCTATAGCTCACTGGTA+TGG - chr7_2:2886720-2886739 Msa1044520:intron 40.0%
TCGCCTTTATAGCAATTGGA+TGG - chr7_2:2886944-2886963 Msa1044520:intron 40.0%
TGGCCATCCAATTGCTATAA+AGG + chr7_2:2886950-2886969 None:intergenic 40.0%
!! TATTGGCTTCGTCTCTATCT+AGG + chr7_2:2887144-2887163 None:intergenic 40.0%
!!! AATATTTTTTTTGGGGGGGG+GGG + chr7_2:2888502-2888521 None:intergenic 40.0%
ATAGATGAGCACTTTCACCA+TGG - chr7_2:2888605-2888624 Msa1044520:CDS 40.0%
TTCATTGTGCTTACCCTCAA+TGG - chr7_2:2888706-2888725 Msa1044520:intron 40.0%
CTTGCCATTAATAAGACGCA+TGG - chr7_2:2888771-2888790 Msa1044520:intron 40.0%
GAGATACCATCCGTCAATTA+TGG + chr7_2:2889086-2889105 None:intergenic 40.0%
! TAATTGACGGATGGTATCTC+AGG - chr7_2:2889086-2889105 Msa1044520:intron 40.0%
TCACAGGCAAGAGATTTACA+TGG + chr7_2:2889175-2889194 None:intergenic 40.0%
GGTTTGCGAAATTAACTCGA+TGG - chr7_2:2889316-2889335 Msa1044520:intron 40.0%
GGGATATATGGTGTGGAATA+TGG + chr7_2:2889416-2889435 None:intergenic 40.0%
!! ATTTTCGGGGATATATGGTG+TGG + chr7_2:2889423-2889442 None:intergenic 40.0%
GCTGCTCGTAAATTATAGCT+TGG + chr7_2:2889447-2889466 None:intergenic 40.0%
! CTTTCCCCAATTTTCTTGGA+TGG + chr7_2:2889478-2889497 None:intergenic 40.0%
CATCCAAGAAAATTGGGGAA+AGG - chr7_2:2889476-2889495 Msa1044520:CDS 40.0%
AGTATCTGAATGAGGCTAGT+TGG - chr7_2:2889826-2889845 Msa1044520:intron 40.0%
! TGAATGAGGCTAGTTGGAAT+TGG - chr7_2:2889832-2889851 Msa1044520:intron 40.0%
GGACCTAATTAGGCATAATC+AGG + chr7_2:2889978-2889997 None:intergenic 40.0%
ATGCCTAATTAGGTCCAAGT+TGG - chr7_2:2889982-2890001 Msa1044520:intron 40.0%
AAGCCAACTTGGACCTAATT+AGG + chr7_2:2889988-2890007 None:intergenic 40.0%
CTCGTTAAGTTCACGGTTTA+TGG - chr7_2:2890141-2890160 Msa1044520:intron 40.0%
!! AGCTCTGAGAGACATTCATT+AGG - chr7_2:2890198-2890217 Msa1044520:intron 40.0%
! TTTTGTTAGGGCAATCGCAT+TGG - chr7_2:2890254-2890273 Msa1044520:CDS 40.0%
!! GAGAGAGACTTGTTTGGTGT+GGG + chr7_2:2884079-2884098 None:intergenic 45.0%
! AGAGAGAGACTTGTTTGGTG+TGG + chr7_2:2884080-2884099 None:intergenic 45.0%
! GAGAGAGAGAGAGACTTGTT+TGG + chr7_2:2884085-2884104 None:intergenic 45.0%
TCCTCAGATTAGACGTGTAC+TGG - chr7_2:2884601-2884620 Msa1044520:intron 45.0%
ACCAGTACACGTCTAATCTG+AGG + chr7_2:2884605-2884624 None:intergenic 45.0%
TATACGAGCTGTGGCAATTC+CGG - chr7_2:2884850-2884869 Msa1044520:intron 45.0%
AAACAGCTAGCAGAACGCTA+TGG - chr7_2:2884908-2884927 Msa1044520:intron 45.0%
GAAGACAGGTCCTTTCTGTT+TGG + chr7_2:2885352-2885371 None:intergenic 45.0%
! GTATCTACTTCCTCTGGCTT+GGG - chr7_2:2885548-2885567 Msa1044520:intron 45.0%
GAGAAGATCTGTCGAGAGAT+AGG + chr7_2:2885649-2885668 None:intergenic 45.0%
! GCCCCACAGTTCTTTGTTAT+AGG - chr7_2:2885728-2885747 Msa1044520:CDS 45.0%
GAACGCGTGTACATTGGAAA+AGG + chr7_2:2886148-2886167 None:intergenic 45.0%
TATGAGGGAGAGAGAATAGG+TGG + chr7_2:2886323-2886342 None:intergenic 45.0%
GTTAGTTAGCGAAGAGTCCA+TGG + chr7_2:2886365-2886384 None:intergenic 45.0%
ATACGAGGAGAAAGACAGCA+GGG + chr7_2:2886407-2886426 None:intergenic 45.0%
TATACGAGGAGAAAGACAGC+AGG + chr7_2:2886408-2886427 None:intergenic 45.0%
TAGCATCCATGTATGCACTG+AGG - chr7_2:2886538-2886557 Msa1044520:intron 45.0%
GCTATACCTCAGTGCATACA+TGG + chr7_2:2886547-2886566 None:intergenic 45.0%
TCAAACTCATCCTGCCAAAC+AGG + chr7_2:2886642-2886661 None:intergenic 45.0%
GATATGGTCCATTTCGTTGC+TGG - chr7_2:2886697-2886716 Msa1044520:intron 45.0%
ACAAGACTGGAATCATGGGA+TGG - chr7_2:2886980-2886999 Msa1044520:intron 45.0%
! ATTCTGGTTGATGCCATGGT+TGG - chr7_2:2887008-2887027 Msa1044520:intron 45.0%
! TTCTGGTTGATGCCATGGTT+GGG - chr7_2:2887009-2887028 Msa1044520:intron 45.0%
ATGGTTGGGCTATCACTTCT+GGG - chr7_2:2887023-2887042 Msa1044520:intron 45.0%
CGAAGCCAATAAACAGTCAC+TGG - chr7_2:2887153-2887172 Msa1044520:intron 45.0%
CCATCGTTTGTAGGGAATCA+GGG + chr7_2:2887393-2887412 None:intergenic 45.0%
ACCATCGTTTGTAGGGAATC+AGG + chr7_2:2887394-2887413 None:intergenic 45.0%
TCACCTTGTGCGATAAAGCA+TGG + chr7_2:2887508-2887527 None:intergenic 45.0%
ATGCTTTATCGCACAAGGTG+AGG - chr7_2:2887507-2887526 Msa1044520:CDS 45.0%
GAGAATAGTGCAACACCTAC+AGG + chr7_2:2887653-2887672 None:intergenic 45.0%
GTGTTGCACTATTCTCCATC+TGG - chr7_2:2887657-2887676 Msa1044520:intron 45.0%
AATAAAGAGGGCTGACCAGA+TGG + chr7_2:2887675-2887694 None:intergenic 45.0%
ATAGGATACTGTCTTGGGGT+GGG + chr7_2:2887732-2887751 None:intergenic 45.0%
AATAGGATACTGTCTTGGGG+TGG + chr7_2:2887733-2887752 None:intergenic 45.0%
TCAGGTACAACCTAACGGTT+TGG + chr7_2:2888389-2888408 None:intergenic 45.0%
!!! ATATTTTTTTTGGGGGGGGG+GGG + chr7_2:2888501-2888520 None:intergenic 45.0%
TGGTGCAGTATGATGTACCA+TGG + chr7_2:2888625-2888644 None:intergenic 45.0%
CACAGACAAATCTGCATGAC+TGG + chr7_2:2889685-2889704 None:intergenic 45.0%
TGGAGCTCTCGTTAAGTTCA+CGG - chr7_2:2890134-2890153 Msa1044520:intron 45.0%
!!! ATTTTTATAAAAGTAAAAAA+TGG - chr7_2:2887451-2887470 Msa1044520:CDS 5.0%
GATCTGCGTCCACATTTGGA+GGG - chr7_2:2884052-2884071 Msa1044520:three_prime_UTR 50.0%
ATCTGCGTCCACATTTGGAG+GGG - chr7_2:2884053-2884072 Msa1044520:three_prime_UTR 50.0%
TGCAGGGTTCTTCATTCCAG+AGG - chr7_2:2884308-2884327 Msa1044520:three_prime_UTR 50.0%
GCCAGAGGAAGTAGATACCA+GGG + chr7_2:2885546-2885565 None:intergenic 50.0%
AGCCAGAGGAAGTAGATACC+AGG + chr7_2:2885547-2885566 None:intergenic 50.0%
GGTATCTACTTCCTCTGGCT+TGG - chr7_2:2885547-2885566 Msa1044520:intron 50.0%
CTGTGGGGCAAAAACGAAAG+AGG + chr7_2:2885717-2885736 None:intergenic 50.0%
GACAGAGAACGCGTGTACAT+TGG + chr7_2:2886154-2886173 None:intergenic 50.0%
ATCCAGAGTCACAGTCTCCT+AGG - chr7_2:2886275-2886294 Msa1044520:intron 50.0%
TTCCTAGGAGACTGTGACTC+TGG + chr7_2:2886280-2886299 None:intergenic 50.0%
ATACTGCTTGGCAGCCTGTT+TGG - chr7_2:2886625-2886644 Msa1044520:intron 50.0%
GCTGGATGTCTATAGCTCAC+TGG - chr7_2:2886715-2886734 Msa1044520:intron 50.0%
CAGAAGTGATAGCCCAACCA+TGG + chr7_2:2887024-2887043 None:intergenic 50.0%
CATGGTTGGGCTATCACTTC+TGG - chr7_2:2887022-2887041 Msa1044520:intron 50.0%
GCATACAACGCATGCAACCA+GGG + chr7_2:2887329-2887348 None:intergenic 50.0%
AGCATACAACGCATGCAACC+AGG + chr7_2:2887330-2887349 None:intergenic 50.0%
TTGCATGCGTTGTATGCTGC+CGG - chr7_2:2887332-2887351 Msa1044520:intron 50.0%
CAAGATGAGGGAGTTCAGCA+GGG - chr7_2:2887366-2887385 Msa1044520:intron 50.0%
AAGATGAGGGAGTTCAGCAG+GGG - chr7_2:2887367-2887386 Msa1044520:intron 50.0%
CCCTGATTCCCTACAAACGA+TGG - chr7_2:2887390-2887409 Msa1044520:intron 50.0%
CAGCCATGCTTTATCGCACA+AGG - chr7_2:2887502-2887521 Msa1044520:CDS 50.0%
CTTGGTCTCTCTCTACCTGT+AGG - chr7_2:2887635-2887654 Msa1044520:intron 50.0%
!!! TATTTTTTTTGGGGGGGGGG+GGG + chr7_2:2888500-2888519 None:intergenic 50.0%
CTGTGGGCCATATGTCTAAG+AGG - chr7_2:2888563-2888582 Msa1044520:CDS 50.0%
GCTGCACAAGCACAGCTTAA+TGG - chr7_2:2888678-2888697 Msa1044520:CDS 50.0%
!! TCCACTGGAGCTGGTTCTAC+CGG + chr7_2:2884872-2884891 None:intergenic 55.0%
ACCAGCTCCAGTGGAAAGTG+CGG - chr7_2:2884877-2884896 Msa1044520:intron 55.0%
CTGTACTCCGCACTTTCCAC+TGG + chr7_2:2884887-2884906 None:intergenic 55.0%
! ATCTGCCACTTCCTATGCGC+TGG - chr7_2:2885497-2885516 Msa1044520:intron 55.0%
! TCTGCCACTTCCTATGCGCT+GGG - chr7_2:2885498-2885517 Msa1044520:intron 55.0%
CATAAGAAGCCCCAGCGCAT+AGG + chr7_2:2885511-2885530 None:intergenic 55.0%
GCCCTGGTATCTACTTCCTC+TGG - chr7_2:2885542-2885561 Msa1044520:intron 55.0%
!! TACTTCCTCTGGCTTGGGCT+TGG - chr7_2:2885553-2885572 Msa1044520:intron 55.0%
TGGACAGGGACTGCTGTAAC+TGG - chr7_2:2885573-2885592 Msa1044520:intron 55.0%
GGACAGGGACTGCTGTAACT+GGG - chr7_2:2885574-2885593 Msa1044520:intron 55.0%
GACAGGGACTGCTGTAACTG+GGG - chr7_2:2885575-2885594 Msa1044520:intron 55.0%
GGGAGAGAGAATAGGTGGCT+GGG + chr7_2:2886318-2886337 None:intergenic 55.0%
AGGGAGAGAGAATAGGTGGC+TGG + chr7_2:2886319-2886338 None:intergenic 55.0%
TAACTAGCCGTCTCCCCTTC+TGG - chr7_2:2886381-2886400 Msa1044520:intron 55.0%
AAAGACAGCAGGGCCAGAAG+GGG + chr7_2:2886397-2886416 None:intergenic 55.0%
GAAAGACAGCAGGGCCAGAA+GGG + chr7_2:2886398-2886417 None:intergenic 55.0%
AGAAAGACAGCAGGGCCAGA+AGG + chr7_2:2886399-2886418 None:intergenic 55.0%
GCAAGATGAGGGAGTTCAGC+AGG - chr7_2:2887365-2887384 Msa1044520:intron 55.0%
!! TGGGGTGGGTTGGACATGTT+AGG + chr7_2:2887718-2887737 None:intergenic 55.0%
GATACTGTCTTGGGGTGGGT+TGG + chr7_2:2887728-2887747 None:intergenic 55.0%
!!! ATTTTTTTTGGGGGGGGGGG+GGG + chr7_2:2888499-2888518 None:intergenic 55.0%
TCCGGTAGAACCAGCTCCAG+TGG - chr7_2:2884868-2884887 Msa1044520:intron 60.0%
TCCGCACTTTCCACTGGAGC+TGG + chr7_2:2884881-2884900 None:intergenic 60.0%
! CTGCCACTTCCTATGCGCTG+GGG - chr7_2:2885499-2885518 Msa1044520:intron 60.0%
AAGCCCCAGCGCATAGGAAG+TGG + chr7_2:2885505-2885524 None:intergenic 60.0%
!! CTCTGGCTTGGGCTTGGACA+GGG - chr7_2:2885559-2885578 Msa1044520:intron 60.0%
TGCTTGGCAGCCTGTTTGGC+AGG - chr7_2:2886629-2886648 Msa1044520:intron 60.0%
GGTGTGGGCCCCTCCAAATG+TGG + chr7_2:2884064-2884083 None:intergenic 65.0%
CCTGTCCAAGCCCAAGCCAG+AGG + chr7_2:2885561-2885580 None:intergenic 65.0%
!! CCTCTGGCTTGGGCTTGGAC+AGG - chr7_2:2885558-2885577 Msa1044520:intron 65.0%
AGCAGGGCCAGAAGGGGAGA+CGG + chr7_2:2886391-2886410 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 2884052 2890388 2884052 ID=Msa1044520;Name=Msa1044520
chr7_2 mRNA 2884052 2890388 2884052 ID=Msa1044520-mRNA-1;Parent=Msa1044520;Name=Msa1044520-mRNA-1;_AED=0.09;_eAED=0.09;_QI=69|1|1|1|0.9|0.81|11|379|468
chr7_2 exon 2884052 2884257 2884052 ID=Msa1044520-mRNA-1:exon:816;Parent=Msa1044520-mRNA-1
chr7_2 exon 2884278 2884612 2884278 ID=Msa1044520-mRNA-1:exon:815;Parent=Msa1044520-mRNA-1
chr7_2 exon 2884943 2885057 2884943 ID=Msa1044520-mRNA-1:exon:814;Parent=Msa1044520-mRNA-1
chr7_2 exon 2885713 2885831 2885713 ID=Msa1044520-mRNA-1:exon:813;Parent=Msa1044520-mRNA-1
chr7_2 exon 2887396 2887573 2887396 ID=Msa1044520-mRNA-1:exon:812;Parent=Msa1044520-mRNA-1
chr7_2 exon 2887704 2887826 2887704 ID=Msa1044520-mRNA-1:exon:811;Parent=Msa1044520-mRNA-1
chr7_2 exon 2888552 2888703 2888552 ID=Msa1044520-mRNA-1:exon:810;Parent=Msa1044520-mRNA-1
chr7_2 exon 2888844 2888987 2888844 ID=Msa1044520-mRNA-1:exon:809;Parent=Msa1044520-mRNA-1
chr7_2 exon 2889437 2889681 2889437 ID=Msa1044520-mRNA-1:exon:808;Parent=Msa1044520-mRNA-1
chr7_2 exon 2890064 2890127 2890064 ID=Msa1044520-mRNA-1:exon:807;Parent=Msa1044520-mRNA-1
chr7_2 exon 2890215 2890388 2890215 ID=Msa1044520-mRNA-1:exon:806;Parent=Msa1044520-mRNA-1
chr7_2 five_prime_UTR 2890320 2890388 2890320 ID=Msa1044520-mRNA-1:five_prime_utr;Parent=Msa1044520-mRNA-1
chr7_2 CDS 2890215 2890319 2890215 ID=Msa1044520-mRNA-1:cds;Parent=Msa1044520-mRNA-1
chr7_2 CDS 2890064 2890127 2890064 ID=Msa1044520-mRNA-1:cds;Parent=Msa1044520-mRNA-1
chr7_2 CDS 2889437 2889681 2889437 ID=Msa1044520-mRNA-1:cds;Parent=Msa1044520-mRNA-1
chr7_2 CDS 2888844 2888987 2888844 ID=Msa1044520-mRNA-1:cds;Parent=Msa1044520-mRNA-1
chr7_2 CDS 2888552 2888703 2888552 ID=Msa1044520-mRNA-1:cds;Parent=Msa1044520-mRNA-1
chr7_2 CDS 2887704 2887826 2887704 ID=Msa1044520-mRNA-1:cds;Parent=Msa1044520-mRNA-1
chr7_2 CDS 2887396 2887573 2887396 ID=Msa1044520-mRNA-1:cds;Parent=Msa1044520-mRNA-1
chr7_2 CDS 2885713 2885831 2885713 ID=Msa1044520-mRNA-1:cds;Parent=Msa1044520-mRNA-1
chr7_2 CDS 2884943 2885057 2884943 ID=Msa1044520-mRNA-1:cds;Parent=Msa1044520-mRNA-1
chr7_2 CDS 2884451 2884612 2884451 ID=Msa1044520-mRNA-1:cds;Parent=Msa1044520-mRNA-1
chr7_2 three_prime_UTR 2884278 2884450 2884278 ID=Msa1044520-mRNA-1:three_prime_utr;Parent=Msa1044520-mRNA-1
chr7_2 three_prime_UTR 2884052 2884257 2884052 ID=Msa1044520-mRNA-1:three_prime_utr;Parent=Msa1044520-mRNA-1
Gene Sequence

>Msa1044520

ATGAGTTTATCTTTCAGAGAGACTGGGAGAGAGAGAGAGAGAGAGAGCTCAATTTCATCTCAAAAAATGGCTTGCACCTCTGCAAATTCATTACTCCAATTAAAGGGTTCTTCATTCCAGAGGCCAGTTTTGAATTTGAGAACAAACATTTCTGCTCATTACTCACCTGGCTTATTTAGCCTAAAAGGTGATGGGTTAATCCATAAAGGGTTCAGGCAACAAAGTCAAAAACATTTGATACCTAGAAATAAAGTTACAGTTATACGAGCTGTGGCAATTCCGGTAGAACCAGCTCCAGTGGAAAGTGCGGAGTACAGAAAACAGCTAGCAGAACGCTATGGTTTTGAGCAAATCGGAGAGCCGCTTCCAGACAATGTTACATTAAAAGATGTCATTACTTCTCTTCCTAAGAAGGTTTTTGAGATTGATGATGTTAAAGCATGGAAGTCTGTTTTGATATCTGCCACTTCCTATGCGCTGGGGCTTCTTATGATTTCTAAAGCGCCCTGGTATCTACTTCCTCTGGCTTGGGCTTGGACAGGGACTGCTGTAACTGGGTTCTTTGTTATAGGACATGATTGCGCTCACAAATCATTTTCAACAAACAAATTGGTAGAAGACATTGTTGGAACTCTGGCCTTTTTGCCACTAATTTATCCATATGAGCCATGGCGATTTAAGCATGACAAACATCATGCAAAAACAAACATGTTGAAAGAAGATACTGCTTGGCAGCCTGTTTGGCAGGATGAGTTTGAGTCAAGTCCATTTTTGAGGAAAGCAATAATATATGGATATGGTCCATTTCGTTGCTGGATGTCTATAGCTCACTGGTTGGTCTCTCACTTCGATTTGAAGACGTTTAGACCAAATGAAATAAAGAGGGTGAAGATAAGTTTGGCTTGTGTTTTCGCCTTTATAGCAATTGGATGGCCATTAATTATTTACAAGACTGGAATCATGGGATGGATAAAATTCTGGTTGATGCCATGGTTGGGCTATCACTTCTGGATGAGCACTTTCACCATGGTACATCATACTGCACCACACATACCATTCAAAAACTCAGAAGAATGGAATGCTGCACAAGCACAGCTTAATGGAACTGTTCATTGTGCTTACCCTCAATGGATCGAGATCTTATGCCATGATATTAATGTCCATATTCCACACCATATATCCCCGAAAATACCAAGCTATAATTTACGAGCAGCCCATAAATCCATCCAAGAAAATTGGGGAAAGTATCTGAATGAGGCTAGTTGGAATTGGCGATTGATGAAGACAATCATGACAGTGTGTCATGTGTACGATAAGCAGCAAAATTATGTCTCCTTTGATGAAGTTGCTCCTAAAGAATCTCGTCCAATTAGATTTTTGAAGAAAGTAATGCCTGATTATGCCTAA

Protein sequence

>Msa1044520

MSLSFRETGRERERESSISSQKMACTSANSLLQLKGSSFQRPVLNLRTNISAHYSPGLFSLKGDGLIHKGFRQQSQKHLIPRNKVTVIRAVAIPVEPAPVESAEYRKQLAERYGFEQIGEPLPDNVTLKDVITSLPKKVFEIDDVKAWKSVLISATSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSTNKLVEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLKEDTAWQPVWQDEFESSPFLRKAIIYGYGPFRCWMSIAHWLVSHFDLKTFRPNEIKRVKISLACVFAFIAIGWPLIIYKTGIMGWIKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKNSEEWNAAQAQLNGTVHCAYPQWIEILCHDINVHIPHHISPKIPSYNLRAAHKSIQENWGKYLNEASWNWRLMKTIMTVCHVYDKQQNYVSFDEVAPKESRPIRFLKKVMPDYA*