AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0797070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797070 MtrunA17_Chr5g0400141 99.184 245 1 1 1 245 1 244 2.96e-179 491
Msa0797070 MtrunA17_Chr4g0048231 27.083 192 129 4 21 208 8 192 1.13e-11 63.9
Msa0797070 MtrunA17_Chr7g0271811 26.291 213 144 5 21 226 73 279 3.53e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797070 AT2G38740.1 70.870 230 67 0 11 240 12 241 2.45e-123 350
Msa0797070 AT1G56500.2 27.103 214 141 5 21 226 74 280 2.23e-13 69.7
Msa0797070 AT1G56500.1 27.103 214 141 5 21 226 74 280 2.52e-13 69.7
Msa0797070 AT4G21470.1 27.941 204 132 6 10 208 2 195 6.54e-12 65.1

Find 92 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATGCTGCCCACAATTT+TGG 0.109444 5_3:-9178035 None:intergenic
TTCTTTCATGCTGTTATTAT+TGG 0.134310 5_3:+9177718 Msa0797070:CDS
TTTCAAAGCAACACTGATTA+TGG 0.178476 5_3:-9178207 None:intergenic
TCGTTGCAGGATTCTGTTTC+AGG 0.193983 5_3:+9177900 Msa0797070:intron
CAGTAAATCCTCTGGGTTTC+GGG 0.200098 5_3:-9177970 None:intergenic
AGACCTTTCAAGTAGGGTTC+TGG 0.300746 5_3:-9177769 None:intergenic
TGCTTCAATTGGAGCAAGTT+TGG 0.305673 5_3:-9177092 None:intergenic
GAGCAACTGAAGCCGTTAAA+TGG 0.315774 5_3:+9177583 Msa0797070:CDS
GGCATGTGAATTTGATTCTT+TGG 0.325832 5_3:+9176341 Msa0797070:five_prime_UTR
AAAGCCTGCCTTTCTGATAA+AGG 0.327178 5_3:+9178001 Msa0797070:CDS
GTGCGACCGGCATAATTTCT+TGG 0.335993 5_3:+9178101 Msa0797070:three_prime_UTR
TCAGTAAATCCTCTGGGTTT+CGG 0.346064 5_3:-9177971 None:intergenic
GCTGCTGGGATGCCTGTTAT+TGG 0.354239 5_3:+9177939 Msa0797070:CDS
TGAGAGAGAGTGAGGGAGGA+AGG 0.365956 5_3:+9178314 Msa0797070:three_prime_UTR
TTTAAAGTTTGTAGAAGATA+AGG 0.369133 5_3:+9177443 Msa0797070:CDS
CTATAAAGTATAATGAATAA+TGG 0.379494 5_3:-9178356 None:intergenic
TCCAAAATTGTGGGCAGCAT+TGG 0.379963 5_3:+9178034 Msa0797070:CDS
GCTCCCATCAGTAAATCCTC+TGG 0.391301 5_3:-9177978 None:intergenic
ATGAGTTCTGCATTTGGTCT+TGG 0.393932 5_3:-9177670 None:intergenic
TGCATTTGGTCTTGGAGCAT+TGG 0.395388 5_3:-9177662 None:intergenic
TGAAGCTCTCAAAGCATCTA+AGG 0.401317 5_3:+9177792 Msa0797070:CDS
CGGGTAGATATACCAATAAC+AGG 0.404855 5_3:-9177951 None:intergenic
AGAGAGTGAGGGAGGAAGGG+AGG 0.410107 5_3:+9178318 Msa0797070:three_prime_UTR
GAGAGAATGAGTTCTGCATT+TGG 0.417411 5_3:-9177676 None:intergenic
TTTCACGAAAAGCATAATAG+TGG 0.419783 5_3:-9177159 None:intergenic
TCAAACAGCACTGCTTCAAT+TGG 0.423109 5_3:-9177103 None:intergenic
GCCTTGATAAAGTGAGGAAA+TGG 0.427010 5_3:+9177605 Msa0797070:CDS
ATCAAAGCAGGAGTCGCTGC+TGG 0.427325 5_3:+9177924 Msa0797070:CDS
ACTTTATCAAGGCCATTTAA+CGG 0.428311 5_3:-9177595 None:intergenic
CGAAAAGCATAATAGTGGAT+TGG 0.428774 5_3:-9177154 None:intergenic
GAAAAGCATAATAGTGGATT+GGG 0.432417 5_3:-9177153 None:intergenic
GGATCACACATTTATATTTG+AGG 0.435509 5_3:+9177813 Msa0797070:CDS
GGTTGTCAGATTGGTTTCAA+TGG 0.438195 5_3:+9177321 Msa0797070:intron
TTCAAGTAGGGTTCTGGATG+AGG 0.438758 5_3:-9177763 None:intergenic
CCACACACGAAGCTAAACTA+TGG 0.440508 5_3:+9176429 Msa0797070:exon
ATTGCCTTGGATCTCTTCCC+TGG 0.441811 5_3:+9177405 Msa0797070:CDS
GGATCTCTTCCCTGGTGATC+GGG 0.441858 5_3:+9177413 Msa0797070:CDS
TCCATTTCCTCACTTTATCA+AGG 0.442894 5_3:-9177606 None:intergenic
TGGATCTCTTCCCTGGTGAT+CGG 0.444007 5_3:+9177412 Msa0797070:CDS
TTACCTTTCGACGGAATTCT+CGG 0.446019 5_3:-9176458 None:intergenic
GAGAGTGAGGGAGGAAGGGA+GGG 0.447743 5_3:+9178319 Msa0797070:three_prime_UTR
CTCCCATCAGTAAATCCTCT+GGG 0.451240 5_3:-9177977 None:intergenic
ACAAAATTATACAGGTGATC+TGG 0.457224 5_3:-9178157 None:intergenic
AATGTGATATTTGGCTATGA+AGG 0.465821 5_3:+9178265 Msa0797070:three_prime_UTR
AAACCTCGTTCCCGATCACC+AGG 0.467601 5_3:-9177423 None:intergenic
AAGATAAGGAAGCCATGTTT+CGG 0.470711 5_3:+9177457 Msa0797070:CDS
AAATAAAGTAAAAGAATAAG+TGG 0.477288 5_3:+9176304 Msa0797070:five_prime_UTR
TCACATGTATTGCAATTCCT+TGG 0.482605 5_3:-9178294 None:intergenic
GAGAGAGAGTGAGGGAGGAA+GGG 0.491806 5_3:+9178315 Msa0797070:three_prime_UTR
ATGTGAATTTGATTCTTTGG+CGG 0.501927 5_3:+9176344 Msa0797070:five_prime_UTR
TAATCCTTTATCAGAAAGGC+AGG 0.505843 5_3:-9178005 None:intergenic
ATCATAATCCTTTATCAGAA+AGG 0.507299 5_3:-9178009 None:intergenic
ATCATTGTGCTTGCCAGCAA+CGG 0.511684 5_3:-9177379 None:intergenic
GCTTCAAGACCTTTCAAGTA+GGG 0.512510 5_3:-9177775 None:intergenic
GAACTCATTCTCTCAAAACT+TGG 0.514892 5_3:+9177685 Msa0797070:CDS
ATGAATGAATGAGAGAGGTT+AGG 0.516706 5_3:-9176399 None:intergenic
CCCCTGCAACAAAATTATAC+AGG 0.517726 5_3:-9178165 None:intergenic
TTGGAAGAACTTGACAAGTC+CGG 0.524640 5_3:+9178053 Msa0797070:CDS
GCACAATGATGACATTGCCT+TGG 0.533662 5_3:+9177392 Msa0797070:CDS
CATGTGAGAGAGAGTGAGGG+AGG 0.534460 5_3:+9178310 Msa0797070:three_prime_UTR
ATTATGATGATCCAAAATTG+TGG 0.545112 5_3:+9178024 Msa0797070:CDS
GTAGGGTTCTGGATGAGGCT+TGG 0.551862 5_3:-9177758 None:intergenic
CATCCAGAACCCTACTTGAA+AGG 0.553649 5_3:+9177766 Msa0797070:CDS
TCTGTTTCAGGAATCAAAGC+AGG 0.557269 5_3:+9177912 Msa0797070:CDS
TAAGTGGGTGGCGGCATATG+CGG 0.559269 5_3:+9176320 Msa0797070:five_prime_UTR
TGTCAGATTGGTTTCAATGG+AGG 0.559859 5_3:+9177324 Msa0797070:intron
AACCCAGAGGATTTACTGAT+GGG 0.570236 5_3:+9177975 Msa0797070:CDS
TTCCCTGGTGATCGGGAACG+AGG 0.572268 5_3:+9177420 Msa0797070:CDS
TCAAAGCAGGAGTCGCTGCT+GGG 0.574198 5_3:+9177925 Msa0797070:CDS
AAACCCAGAGGATTTACTGA+TGG 0.582964 5_3:+9177974 Msa0797070:CDS
AATACATGTGAGAGAGAGTG+AGG 0.586139 5_3:+9178306 Msa0797070:three_prime_UTR
AGCTTCAAGACCTTTCAAGT+AGG 0.587847 5_3:-9177776 None:intergenic
GGCTATGAAGGTCAATGCCA+AGG 0.588563 5_3:+9178277 Msa0797070:three_prime_UTR
AGGAAATGGATTGAAGATCG+TGG 0.589739 5_3:+9177619 Msa0797070:CDS
AATAAAGTAAAAGAATAAGT+GGG 0.592323 5_3:+9176305 Msa0797070:five_prime_UTR
TAGGGTTTACCTCCGAAACA+TGG 0.604667 5_3:-9177469 None:intergenic
AAGGAAGCGTTACCTTTCGA+CGG 0.608896 5_3:-9176467 None:intergenic
GTAAAAGAATAAGTGGGTGG+CGG 0.612033 5_3:+9176311 Msa0797070:five_prime_UTR
TGGAGGTAATCCTATAACAG+AGG 0.615734 5_3:+9177341 Msa0797070:CDS
CCATAGTTTAGCTTCGTGTG+TGG 0.616267 5_3:-9176429 None:intergenic
TTATGATGATCCAAAATTGT+GGG 0.617657 5_3:+9178025 Msa0797070:CDS
TAAATGGCCTTGATAAAGTG+AGG 0.625840 5_3:+9177599 Msa0797070:CDS
CTTCCGAGAATTCCGTCGAA+AGG 0.626588 5_3:+9176455 Msa0797070:CDS
AATGAATGAATGAATGAGAG+AGG 0.630221 5_3:-9176404 None:intergenic
TTGGCGGATTCCATTCGTCG+TGG 0.639712 5_3:+9176360 Msa0797070:five_prime_UTR
AAAGTAAAAGAATAAGTGGG+TGG 0.642601 5_3:+9176308 Msa0797070:five_prime_UTR
ATAAGGAAGCCATGTTTCGG+AGG 0.643823 5_3:+9177460 Msa0797070:CDS
ATACATGTGAGAGAGAGTGA+GGG 0.649507 5_3:+9178307 Msa0797070:three_prime_UTR
ATCACCAGGGAAGAGATCCA+AGG 0.667902 5_3:-9177409 None:intergenic
GCAGTGCTGTTTGATATAGA+CGG 0.671189 5_3:+9177112 Msa0797070:CDS
AACCTCGTTCCCGATCACCA+GGG 0.706366 5_3:-9177422 None:intergenic
TATATCTACCCGAAACCCAG+AGG 0.748163 5_3:+9177962 Msa0797070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATACTATAATATCTATT+TGG - chr5_3:9177214-9177233 None:intergenic 10.0%
!! TAAATACTATAATATCTATT+TGG - chr5_3:9177214-9177233 None:intergenic 10.0%
!! AAATAAAGTAAAAGAATAAG+TGG + chr5_3:9176304-9176323 Msa0797070:five_prime_UTR 15.0%
!! AATAAAGTAAAAGAATAAGT+GGG + chr5_3:9176305-9176324 Msa0797070:five_prime_UTR 15.0%
!! ATCTTATTATCATGAAAAAT+AGG - chr5_3:9176578-9176597 None:intergenic 15.0%
!!! TTAACACTAAATATATTTTG+AGG - chr5_3:9176701-9176720 None:intergenic 15.0%
!!! TCATATTTTGTATAAAAGAA+TGG - chr5_3:9176852-9176871 None:intergenic 15.0%
!! TATTAGAAATTAACAAATGT+TGG + chr5_3:9177297-9177316 Msa0797070:intron 15.0%
!!! TTTTGTAATAATGTGATATT+TGG + chr5_3:9178256-9178275 Msa0797070:three_prime_UTR 15.0%
!! CTATAAAGTATAATGAATAA+TGG - chr5_3:9178359-9178378 None:intergenic 15.0%
!! AAATAAAGTAAAAGAATAAG+TGG + chr5_3:9176304-9176323 Msa0797070:five_prime_UTR 15.0%
!! AATAAAGTAAAAGAATAAGT+GGG + chr5_3:9176305-9176324 Msa0797070:five_prime_UTR 15.0%
!! ATCTTATTATCATGAAAAAT+AGG - chr5_3:9176578-9176597 None:intergenic 15.0%
!!! TTAACACTAAATATATTTTG+AGG - chr5_3:9176701-9176720 None:intergenic 15.0%
!!! TCATATTTTGTATAAAAGAA+TGG - chr5_3:9176852-9176871 None:intergenic 15.0%
!! TATTAGAAATTAACAAATGT+TGG + chr5_3:9177297-9177316 Msa0797070:intron 15.0%
!!! TTTTGTAATAATGTGATATT+TGG + chr5_3:9178256-9178275 Msa0797070:three_prime_UTR 15.0%
!! CTATAAAGTATAATGAATAA+TGG - chr5_3:9178359-9178378 None:intergenic 15.0%
!!! TATTTTTCATAATTTGTCTG+CGG - chr5_3:9176281-9176300 None:intergenic 20.0%
!! AAATGAAATCAAGAATATGA+AGG - chr5_3:9176489-9176508 None:intergenic 20.0%
!!! CACAAAGATTTTAAGTTTAT+CGG - chr5_3:9176959-9176978 None:intergenic 20.0%
!! ATAAAAAATTCCTCTGTTAT+AGG - chr5_3:9177354-9177373 None:intergenic 20.0%
!!! TTTAAAGTTTGTAGAAGATA+AGG + chr5_3:9177443-9177462 Msa0797070:CDS 20.0%
!! GAATAAGAACAAATTATCTA+AGG - chr5_3:9177858-9177877 None:intergenic 20.0%
!!! TTCAAAATTTTAATGAGAAC+CGG - chr5_3:9178075-9178094 None:intergenic 20.0%
!!! TATTTTTCATAATTTGTCTG+CGG - chr5_3:9176281-9176300 None:intergenic 20.0%
!! AAATGAAATCAAGAATATGA+AGG - chr5_3:9176489-9176508 None:intergenic 20.0%
!!! CACAAAGATTTTAAGTTTAT+CGG - chr5_3:9176959-9176978 None:intergenic 20.0%
!! ATAAAAAATTCCTCTGTTAT+AGG - chr5_3:9177354-9177373 None:intergenic 20.0%
!!! TTTAAAGTTTGTAGAAGATA+AGG + chr5_3:9177443-9177462 Msa0797070:CDS 20.0%
!! GAATAAGAACAAATTATCTA+AGG - chr5_3:9177858-9177877 None:intergenic 20.0%
!!! TTCAAAATTTTAATGAGAAC+CGG - chr5_3:9178075-9178094 None:intergenic 20.0%
! ATAAAAGAATGGAGATAACA+AGG - chr5_3:9176841-9176860 None:intergenic 25.0%
! TATCCATACTTTATTCCAAA+GGG + chr5_3:9176903-9176922 Msa0797070:intron 25.0%
! TATAAATTGGCATATGACTA+AGG + chr5_3:9177260-9177279 Msa0797070:intron 25.0%
! TAGAAATTAACAAATGTTGG+TGG + chr5_3:9177300-9177319 Msa0797070:intron 25.0%
! ATCTTGAAATTTAGCACAAT+GGG - chr5_3:9177518-9177537 None:intergenic 25.0%
! AATCTTGAAATTTAGCACAA+TGG - chr5_3:9177519-9177538 None:intergenic 25.0%
! TTCTTTCATGCTGTTATTAT+TGG + chr5_3:9177718-9177737 Msa0797070:CDS 25.0%
! ATCATAATCCTTTATCAGAA+AGG - chr5_3:9178012-9178031 None:intergenic 25.0%
! ATTATGATGATCCAAAATTG+TGG + chr5_3:9178024-9178043 Msa0797070:CDS 25.0%
! TTATGATGATCCAAAATTGT+GGG + chr5_3:9178025-9178044 Msa0797070:CDS 25.0%
!! TTTTTACCAAGAAATTATGC+CGG - chr5_3:9178110-9178129 None:intergenic 25.0%
! ATAAAAGAATGGAGATAACA+AGG - chr5_3:9176841-9176860 None:intergenic 25.0%
! TATCCATACTTTATTCCAAA+GGG + chr5_3:9176903-9176922 Msa0797070:intron 25.0%
! TATAAATTGGCATATGACTA+AGG + chr5_3:9177260-9177279 Msa0797070:intron 25.0%
! TAGAAATTAACAAATGTTGG+TGG + chr5_3:9177300-9177319 Msa0797070:intron 25.0%
! ATCTTGAAATTTAGCACAAT+GGG - chr5_3:9177518-9177537 None:intergenic 25.0%
! AATCTTGAAATTTAGCACAA+TGG - chr5_3:9177519-9177538 None:intergenic 25.0%
! TTCTTTCATGCTGTTATTAT+TGG + chr5_3:9177718-9177737 Msa0797070:CDS 25.0%
! ATCATAATCCTTTATCAGAA+AGG - chr5_3:9178012-9178031 None:intergenic 25.0%
! ATTATGATGATCCAAAATTG+TGG + chr5_3:9178024-9178043 Msa0797070:CDS 25.0%
! TTATGATGATCCAAAATTGT+GGG + chr5_3:9178025-9178044 Msa0797070:CDS 25.0%
!! TTTTTACCAAGAAATTATGC+CGG - chr5_3:9178110-9178129 None:intergenic 25.0%
AAAGTAAAAGAATAAGTGGG+TGG + chr5_3:9176308-9176327 Msa0797070:five_prime_UTR 30.0%
ATGTGAATTTGATTCTTTGG+CGG + chr5_3:9176344-9176363 Msa0797070:five_prime_UTR 30.0%
! TTATATTTTACCACGACGAA+TGG - chr5_3:9176373-9176392 None:intergenic 30.0%
AATGAATGAATGAATGAGAG+AGG - chr5_3:9176407-9176426 None:intergenic 30.0%
CCATCTTATAAAGAAACCAA+CGG - chr5_3:9176768-9176787 None:intergenic 30.0%
TATGAACTTCAAAGCAAGTA+AGG + chr5_3:9176867-9176886 Msa0797070:intron 30.0%
ATAAAGTATGGATAGATTCG+AGG - chr5_3:9176897-9176916 None:intergenic 30.0%
CTATCCATACTTTATTCCAA+AGG + chr5_3:9176902-9176921 Msa0797070:intron 30.0%
CTTAAAATCTTTGTGCTAAC+CGG + chr5_3:9176964-9176983 Msa0797070:intron 30.0%
TGACACAACATGAAAGTAAT+GGG - chr5_3:9177054-9177073 None:intergenic 30.0%
!! GAAAAGCATAATAGTGGATT+GGG - chr5_3:9177156-9177175 None:intergenic 30.0%
! TTTCACGAAAAGCATAATAG+TGG - chr5_3:9177162-9177181 None:intergenic 30.0%
TCTTGAAATTTAGCACAATG+GGG - chr5_3:9177517-9177536 None:intergenic 30.0%
GAAACATATTTCCTTGATGA+TGG + chr5_3:9177541-9177560 Msa0797070:intron 30.0%
ACTTTATCAAGGCCATTTAA+CGG - chr5_3:9177598-9177617 None:intergenic 30.0%
GGATCACACATTTATATTTG+AGG + chr5_3:9177813-9177832 Msa0797070:CDS 30.0%
ACAAAATTATACAGGTGATC+TGG - chr5_3:9178160-9178179 None:intergenic 30.0%
! ACCTGTATAATTTTGTTGCA+GGG + chr5_3:9178164-9178183 Msa0797070:three_prime_UTR 30.0%
! TTTCAAAGCAACACTGATTA+TGG - chr5_3:9178210-9178229 None:intergenic 30.0%
AATGTGATATTTGGCTATGA+AGG + chr5_3:9178265-9178284 Msa0797070:three_prime_UTR 30.0%
AAAGTAAAAGAATAAGTGGG+TGG + chr5_3:9176308-9176327 Msa0797070:five_prime_UTR 30.0%
ATGTGAATTTGATTCTTTGG+CGG + chr5_3:9176344-9176363 Msa0797070:five_prime_UTR 30.0%
! TTATATTTTACCACGACGAA+TGG - chr5_3:9176373-9176392 None:intergenic 30.0%
AATGAATGAATGAATGAGAG+AGG - chr5_3:9176407-9176426 None:intergenic 30.0%
CCATCTTATAAAGAAACCAA+CGG - chr5_3:9176768-9176787 None:intergenic 30.0%
TATGAACTTCAAAGCAAGTA+AGG + chr5_3:9176867-9176886 Msa0797070:intron 30.0%
ATAAAGTATGGATAGATTCG+AGG - chr5_3:9176897-9176916 None:intergenic 30.0%
CTATCCATACTTTATTCCAA+AGG + chr5_3:9176902-9176921 Msa0797070:intron 30.0%
CTTAAAATCTTTGTGCTAAC+CGG + chr5_3:9176964-9176983 Msa0797070:intron 30.0%
TGACACAACATGAAAGTAAT+GGG - chr5_3:9177054-9177073 None:intergenic 30.0%
!! GAAAAGCATAATAGTGGATT+GGG - chr5_3:9177156-9177175 None:intergenic 30.0%
! TTTCACGAAAAGCATAATAG+TGG - chr5_3:9177162-9177181 None:intergenic 30.0%
TCTTGAAATTTAGCACAATG+GGG - chr5_3:9177517-9177536 None:intergenic 30.0%
GAAACATATTTCCTTGATGA+TGG + chr5_3:9177541-9177560 Msa0797070:intron 30.0%
ACTTTATCAAGGCCATTTAA+CGG - chr5_3:9177598-9177617 None:intergenic 30.0%
GGATCACACATTTATATTTG+AGG + chr5_3:9177813-9177832 Msa0797070:CDS 30.0%
ACAAAATTATACAGGTGATC+TGG - chr5_3:9178160-9178179 None:intergenic 30.0%
! ACCTGTATAATTTTGTTGCA+GGG + chr5_3:9178164-9178183 Msa0797070:three_prime_UTR 30.0%
! TTTCAAAGCAACACTGATTA+TGG - chr5_3:9178210-9178229 None:intergenic 30.0%
AATGTGATATTTGGCTATGA+AGG + chr5_3:9178265-9178284 Msa0797070:three_prime_UTR 30.0%
!! TTTTCATAATTTGTCTGCGG+AGG - chr5_3:9176278-9176297 None:intergenic 35.0%
GGCATGTGAATTTGATTCTT+TGG + chr5_3:9176341-9176360 Msa0797070:five_prime_UTR 35.0%
ATGAATGAATGAGAGAGGTT+AGG - chr5_3:9176402-9176421 None:intergenic 35.0%
!! TTTTGATCTTTAAGAGTGCG+AGG - chr5_3:9176617-9176636 None:intergenic 35.0%
ATTGAAGATGCACCCAATTT+AGG + chr5_3:9176636-9176655 Msa0797070:intron 35.0%
TTGAAGATGCACCCAATTTA+GGG + chr5_3:9176637-9176656 Msa0797070:intron 35.0%
! TTAGCAGAAGAAAGTGTGAA+TGG - chr5_3:9176675-9176694 None:intergenic 35.0%
TGCTATAGATATATTGCCGT+TGG + chr5_3:9176749-9176768 Msa0797070:intron 35.0%
!! CCGTTGGTTTCTTTATAAGA+TGG + chr5_3:9176765-9176784 Msa0797070:intron 35.0%
TCTAGACTATATGGCCATAA+AGG - chr5_3:9176811-9176830 None:intergenic 35.0%
AACTTCAAAGCAAGTAAGGT+AGG + chr5_3:9176871-9176890 Msa0797070:intron 35.0%
!! GTTCCCTTTGGAATAAAGTA+TGG - chr5_3:9176909-9176928 None:intergenic 35.0%
GATTTCAAGAAAGTTCCCTT+TGG - chr5_3:9176921-9176940 None:intergenic 35.0%
AATCAACTCATGTCATGAAC+CGG - chr5_3:9176986-9177005 None:intergenic 35.0%
CTGACACAACATGAAAGTAA+TGG - chr5_3:9177055-9177074 None:intergenic 35.0%
!! CGAAAAGCATAATAGTGGAT+TGG - chr5_3:9177157-9177176 None:intergenic 35.0%
! TTTTCGTGAAATGCTTCAAG+AGG + chr5_3:9177171-9177190 Msa0797070:CDS 35.0%
AAGATAAGGAAGCCATGTTT+CGG + chr5_3:9177457-9177476 Msa0797070:CDS 35.0%
ATCTAGATAGTCCATCATCA+AGG - chr5_3:9177555-9177574 None:intergenic 35.0%
! TAAATGGCCTTGATAAAGTG+AGG + chr5_3:9177599-9177618 Msa0797070:CDS 35.0%
TCCATTTCCTCACTTTATCA+AGG - chr5_3:9177609-9177628 None:intergenic 35.0%
GAACTCATTCTCTCAAAACT+TGG + chr5_3:9177685-9177704 Msa0797070:CDS 35.0%
TGTTCTTATTCTGCTTCTGA+CGG + chr5_3:9177867-9177886 Msa0797070:intron 35.0%
TAATCCTTTATCAGAAAGGC+AGG - chr5_3:9178008-9178027 None:intergenic 35.0%
! TTTTGAATTACTAGTGCGAC+CGG + chr5_3:9178088-9178107 Msa0797070:three_prime_UTR 35.0%
! CACCTGTATAATTTTGTTGC+AGG + chr5_3:9178163-9178182 Msa0797070:three_prime_UTR 35.0%
! CCTGTATAATTTTGTTGCAG+GGG + chr5_3:9178165-9178184 Msa0797070:three_prime_UTR 35.0%
! CTGTATAATTTTGTTGCAGG+GGG + chr5_3:9178166-9178185 Msa0797070:three_prime_UTR 35.0%
TCACATGTATTGCAATTCCT+TGG - chr5_3:9178297-9178316 None:intergenic 35.0%
GGAGGACAAAATTATAGACT+AGG - chr5_3:9176260-9176279 None:intergenic 35.0%
!! TTTTCATAATTTGTCTGCGG+AGG - chr5_3:9176278-9176297 None:intergenic 35.0%
GGCATGTGAATTTGATTCTT+TGG + chr5_3:9176341-9176360 Msa0797070:five_prime_UTR 35.0%
ATGAATGAATGAGAGAGGTT+AGG - chr5_3:9176402-9176421 None:intergenic 35.0%
!! TTTTGATCTTTAAGAGTGCG+AGG - chr5_3:9176617-9176636 None:intergenic 35.0%
ATTGAAGATGCACCCAATTT+AGG + chr5_3:9176636-9176655 Msa0797070:intron 35.0%
TTGAAGATGCACCCAATTTA+GGG + chr5_3:9176637-9176656 Msa0797070:intron 35.0%
! TTAGCAGAAGAAAGTGTGAA+TGG - chr5_3:9176675-9176694 None:intergenic 35.0%
TGCTATAGATATATTGCCGT+TGG + chr5_3:9176749-9176768 Msa0797070:intron 35.0%
!! CCGTTGGTTTCTTTATAAGA+TGG + chr5_3:9176765-9176784 Msa0797070:intron 35.0%
TCTAGACTATATGGCCATAA+AGG - chr5_3:9176811-9176830 None:intergenic 35.0%
AACTTCAAAGCAAGTAAGGT+AGG + chr5_3:9176871-9176890 Msa0797070:intron 35.0%
!! GTTCCCTTTGGAATAAAGTA+TGG - chr5_3:9176909-9176928 None:intergenic 35.0%
GATTTCAAGAAAGTTCCCTT+TGG - chr5_3:9176921-9176940 None:intergenic 35.0%
AATCAACTCATGTCATGAAC+CGG - chr5_3:9176986-9177005 None:intergenic 35.0%
CTGACACAACATGAAAGTAA+TGG - chr5_3:9177055-9177074 None:intergenic 35.0%
!! CGAAAAGCATAATAGTGGAT+TGG - chr5_3:9177157-9177176 None:intergenic 35.0%
! TTTTCGTGAAATGCTTCAAG+AGG + chr5_3:9177171-9177190 Msa0797070:CDS 35.0%
AAGATAAGGAAGCCATGTTT+CGG + chr5_3:9177457-9177476 Msa0797070:CDS 35.0%
ATCTAGATAGTCCATCATCA+AGG - chr5_3:9177555-9177574 None:intergenic 35.0%
! TAAATGGCCTTGATAAAGTG+AGG + chr5_3:9177599-9177618 Msa0797070:CDS 35.0%
TCCATTTCCTCACTTTATCA+AGG - chr5_3:9177609-9177628 None:intergenic 35.0%
GAACTCATTCTCTCAAAACT+TGG + chr5_3:9177685-9177704 Msa0797070:CDS 35.0%
TGTTCTTATTCTGCTTCTGA+CGG + chr5_3:9177867-9177886 Msa0797070:intron 35.0%
TAATCCTTTATCAGAAAGGC+AGG - chr5_3:9178008-9178027 None:intergenic 35.0%
! TTTTGAATTACTAGTGCGAC+CGG + chr5_3:9178088-9178107 Msa0797070:three_prime_UTR 35.0%
! CACCTGTATAATTTTGTTGC+AGG + chr5_3:9178163-9178182 Msa0797070:three_prime_UTR 35.0%
! CCTGTATAATTTTGTTGCAG+GGG + chr5_3:9178165-9178184 Msa0797070:three_prime_UTR 35.0%
! CTGTATAATTTTGTTGCAGG+GGG + chr5_3:9178166-9178185 Msa0797070:three_prime_UTR 35.0%
TCACATGTATTGCAATTCCT+TGG - chr5_3:9178297-9178316 None:intergenic 35.0%
GTAAAAGAATAAGTGGGTGG+CGG + chr5_3:9176311-9176330 Msa0797070:five_prime_UTR 40.0%
TTACCTTTCGACGGAATTCT+CGG - chr5_3:9176461-9176480 None:intergenic 40.0%
TCACTGCAGATCCCTAAATT+GGG - chr5_3:9176651-9176670 None:intergenic 40.0%
TTCACTGCAGATCCCTAAAT+TGG - chr5_3:9176652-9176671 None:intergenic 40.0%
TATAAGATGGCATTCGTTCG+AGG + chr5_3:9176778-9176797 Msa0797070:intron 40.0%
TTCGAGGCATAGAACCTTTA+TGG + chr5_3:9176794-9176813 Msa0797070:intron 40.0%
GGACAGAACTCTAGACTATA+TGG - chr5_3:9176820-9176839 None:intergenic 40.0%
TGCTTCAATTGGAGCAAGTT+TGG - chr5_3:9177095-9177114 None:intergenic 40.0%
TCAAACAGCACTGCTTCAAT+TGG - chr5_3:9177106-9177125 None:intergenic 40.0%
!! GCAGTGCTGTTTGATATAGA+CGG + chr5_3:9177112-9177131 Msa0797070:CDS 40.0%
!! AATGTTGGTGGTTGTCAGAT+TGG + chr5_3:9177312-9177331 Msa0797070:intron 40.0%
!! GGTTGTCAGATTGGTTTCAA+TGG + chr5_3:9177321-9177340 Msa0797070:intron 40.0%
!! TGTCAGATTGGTTTCAATGG+AGG + chr5_3:9177324-9177343 Msa0797070:intron 40.0%
TGGAGGTAATCCTATAACAG+AGG + chr5_3:9177341-9177360 Msa0797070:CDS 40.0%
!!! TTTTTTATTGCGACCGTTGC+TGG + chr5_3:9177366-9177385 Msa0797070:CDS 40.0%
ACAATGGGGATATAGTTCAG+GGG - chr5_3:9177503-9177522 None:intergenic 40.0%
CACAATGGGGATATAGTTCA+GGG - chr5_3:9177504-9177523 None:intergenic 40.0%
GCCTTGATAAAGTGAGGAAA+TGG + chr5_3:9177605-9177624 Msa0797070:CDS 40.0%
!! AGGAAATGGATTGAAGATCG+TGG + chr5_3:9177619-9177638 Msa0797070:CDS 40.0%
ATGAGTTCTGCATTTGGTCT+TGG - chr5_3:9177673-9177692 None:intergenic 40.0%
GAGAGAATGAGTTCTGCATT+TGG - chr5_3:9177679-9177698 None:intergenic 40.0%
! GCTTCAAGACCTTTCAAGTA+GGG - chr5_3:9177778-9177797 None:intergenic 40.0%
! AGCTTCAAGACCTTTCAAGT+AGG - chr5_3:9177779-9177798 None:intergenic 40.0%
! TGAAGCTCTCAAAGCATCTA+AGG + chr5_3:9177792-9177811 Msa0797070:CDS 40.0%
TCTGTTTCAGGAATCAAAGC+AGG + chr5_3:9177912-9177931 Msa0797070:CDS 40.0%
CGGGTAGATATACCAATAAC+AGG - chr5_3:9177954-9177973 None:intergenic 40.0%
TCAGTAAATCCTCTGGGTTT+CGG - chr5_3:9177974-9177993 None:intergenic 40.0%
AAACCCAGAGGATTTACTGA+TGG + chr5_3:9177974-9177993 Msa0797070:CDS 40.0%
AACCCAGAGGATTTACTGAT+GGG + chr5_3:9177975-9177994 Msa0797070:CDS 40.0%
AAAGCCTGCCTTTCTGATAA+AGG + chr5_3:9178001-9178020 Msa0797070:CDS 40.0%
TTGGAAGAACTTGACAAGTC+CGG + chr5_3:9178053-9178072 Msa0797070:CDS 40.0%
CCCCTGCAACAAAATTATAC+AGG - chr5_3:9178168-9178187 None:intergenic 40.0%
AATACATGTGAGAGAGAGTG+AGG + chr5_3:9178306-9178325 Msa0797070:three_prime_UTR 40.0%
ATACATGTGAGAGAGAGTGA+GGG + chr5_3:9178307-9178326 Msa0797070:three_prime_UTR 40.0%
GTAAAAGAATAAGTGGGTGG+CGG + chr5_3:9176311-9176330 Msa0797070:five_prime_UTR 40.0%
TTACCTTTCGACGGAATTCT+CGG - chr5_3:9176461-9176480 None:intergenic 40.0%
TCACTGCAGATCCCTAAATT+GGG - chr5_3:9176651-9176670 None:intergenic 40.0%
TTCACTGCAGATCCCTAAAT+TGG - chr5_3:9176652-9176671 None:intergenic 40.0%
TATAAGATGGCATTCGTTCG+AGG + chr5_3:9176778-9176797 Msa0797070:intron 40.0%
TTCGAGGCATAGAACCTTTA+TGG + chr5_3:9176794-9176813 Msa0797070:intron 40.0%
GGACAGAACTCTAGACTATA+TGG - chr5_3:9176820-9176839 None:intergenic 40.0%
TGCTTCAATTGGAGCAAGTT+TGG - chr5_3:9177095-9177114 None:intergenic 40.0%
TCAAACAGCACTGCTTCAAT+TGG - chr5_3:9177106-9177125 None:intergenic 40.0%
!! GCAGTGCTGTTTGATATAGA+CGG + chr5_3:9177112-9177131 Msa0797070:CDS 40.0%
!! AATGTTGGTGGTTGTCAGAT+TGG + chr5_3:9177312-9177331 Msa0797070:intron 40.0%
!! GGTTGTCAGATTGGTTTCAA+TGG + chr5_3:9177321-9177340 Msa0797070:intron 40.0%
!! TGTCAGATTGGTTTCAATGG+AGG + chr5_3:9177324-9177343 Msa0797070:intron 40.0%
TGGAGGTAATCCTATAACAG+AGG + chr5_3:9177341-9177360 Msa0797070:CDS 40.0%
!!! TTTTTTATTGCGACCGTTGC+TGG + chr5_3:9177366-9177385 Msa0797070:CDS 40.0%
ACAATGGGGATATAGTTCAG+GGG - chr5_3:9177503-9177522 None:intergenic 40.0%
CACAATGGGGATATAGTTCA+GGG - chr5_3:9177504-9177523 None:intergenic 40.0%
GCCTTGATAAAGTGAGGAAA+TGG + chr5_3:9177605-9177624 Msa0797070:CDS 40.0%
!! AGGAAATGGATTGAAGATCG+TGG + chr5_3:9177619-9177638 Msa0797070:CDS 40.0%
ATGAGTTCTGCATTTGGTCT+TGG - chr5_3:9177673-9177692 None:intergenic 40.0%
GAGAGAATGAGTTCTGCATT+TGG - chr5_3:9177679-9177698 None:intergenic 40.0%
! GCTTCAAGACCTTTCAAGTA+GGG - chr5_3:9177778-9177797 None:intergenic 40.0%
! AGCTTCAAGACCTTTCAAGT+AGG - chr5_3:9177779-9177798 None:intergenic 40.0%
! TGAAGCTCTCAAAGCATCTA+AGG + chr5_3:9177792-9177811 Msa0797070:CDS 40.0%
TCTGTTTCAGGAATCAAAGC+AGG + chr5_3:9177912-9177931 Msa0797070:CDS 40.0%
CGGGTAGATATACCAATAAC+AGG - chr5_3:9177954-9177973 None:intergenic 40.0%
TCAGTAAATCCTCTGGGTTT+CGG - chr5_3:9177974-9177993 None:intergenic 40.0%
AAACCCAGAGGATTTACTGA+TGG + chr5_3:9177974-9177993 Msa0797070:CDS 40.0%
AACCCAGAGGATTTACTGAT+GGG + chr5_3:9177975-9177994 Msa0797070:CDS 40.0%
AAAGCCTGCCTTTCTGATAA+AGG + chr5_3:9178001-9178020 Msa0797070:CDS 40.0%
TTGGAAGAACTTGACAAGTC+CGG + chr5_3:9178053-9178072 Msa0797070:CDS 40.0%
CCCCTGCAACAAAATTATAC+AGG - chr5_3:9178168-9178187 None:intergenic 40.0%
AATACATGTGAGAGAGAGTG+AGG + chr5_3:9178306-9178325 Msa0797070:three_prime_UTR 40.0%
ATACATGTGAGAGAGAGTGA+GGG + chr5_3:9178307-9178326 Msa0797070:three_prime_UTR 40.0%
! CCATAGTTTAGCTTCGTGTG+TGG - chr5_3:9176432-9176451 None:intergenic 45.0%
CCACACACGAAGCTAAACTA+TGG + chr5_3:9176429-9176448 Msa0797070:exon 45.0%
!! AAGGAAGCGTTACCTTTCGA+CGG - chr5_3:9176470-9176489 None:intergenic 45.0%
ATCATTGTGCTTGCCAGCAA+CGG - chr5_3:9177382-9177401 None:intergenic 45.0%
GCACAATGATGACATTGCCT+TGG + chr5_3:9177392-9177411 Msa0797070:CDS 45.0%
ATAAGGAAGCCATGTTTCGG+AGG + chr5_3:9177460-9177479 Msa0797070:CDS 45.0%
TAGGGTTTACCTCCGAAACA+TGG - chr5_3:9177472-9177491 None:intergenic 45.0%
CAATGGGGATATAGTTCAGG+GGG - chr5_3:9177502-9177521 None:intergenic 45.0%
GCACAATGGGGATATAGTTC+AGG - chr5_3:9177505-9177524 None:intergenic 45.0%
GAGCAACTGAAGCCGTTAAA+TGG + chr5_3:9177583-9177602 Msa0797070:CDS 45.0%
!! TGCATTTGGTCTTGGAGCAT+TGG - chr5_3:9177665-9177684 None:intergenic 45.0%
!! TTCAAGTAGGGTTCTGGATG+AGG - chr5_3:9177766-9177785 None:intergenic 45.0%
CATCCAGAACCCTACTTGAA+AGG + chr5_3:9177766-9177785 Msa0797070:CDS 45.0%
! AGACCTTTCAAGTAGGGTTC+TGG - chr5_3:9177772-9177791 None:intergenic 45.0%
GAATCCTGCAACGACAAAAC+AGG - chr5_3:9177894-9177913 None:intergenic 45.0%
TCGTTGCAGGATTCTGTTTC+AGG + chr5_3:9177900-9177919 Msa0797070:intron 45.0%
TATATCTACCCGAAACCCAG+AGG + chr5_3:9177962-9177981 Msa0797070:CDS 45.0%
CAGTAAATCCTCTGGGTTTC+GGG - chr5_3:9177973-9177992 None:intergenic 45.0%
CTCCCATCAGTAAATCCTCT+GGG - chr5_3:9177980-9177999 None:intergenic 45.0%
TCCAAAATTGTGGGCAGCAT+TGG + chr5_3:9178034-9178053 Msa0797070:CDS 45.0%
! TCCAATGCTGCCCACAATTT+TGG - chr5_3:9178038-9178057 None:intergenic 45.0%
! CCATAGTTTAGCTTCGTGTG+TGG - chr5_3:9176432-9176451 None:intergenic 45.0%
CCACACACGAAGCTAAACTA+TGG + chr5_3:9176429-9176448 Msa0797070:exon 45.0%
!! AAGGAAGCGTTACCTTTCGA+CGG - chr5_3:9176470-9176489 None:intergenic 45.0%
ATCATTGTGCTTGCCAGCAA+CGG - chr5_3:9177382-9177401 None:intergenic 45.0%
GCACAATGATGACATTGCCT+TGG + chr5_3:9177392-9177411 Msa0797070:CDS 45.0%
ATAAGGAAGCCATGTTTCGG+AGG + chr5_3:9177460-9177479 Msa0797070:CDS 45.0%
TAGGGTTTACCTCCGAAACA+TGG - chr5_3:9177472-9177491 None:intergenic 45.0%
CAATGGGGATATAGTTCAGG+GGG - chr5_3:9177502-9177521 None:intergenic 45.0%
GCACAATGGGGATATAGTTC+AGG - chr5_3:9177505-9177524 None:intergenic 45.0%
GAGCAACTGAAGCCGTTAAA+TGG + chr5_3:9177583-9177602 Msa0797070:CDS 45.0%
!! TGCATTTGGTCTTGGAGCAT+TGG - chr5_3:9177665-9177684 None:intergenic 45.0%
!! TTCAAGTAGGGTTCTGGATG+AGG - chr5_3:9177766-9177785 None:intergenic 45.0%
CATCCAGAACCCTACTTGAA+AGG + chr5_3:9177766-9177785 Msa0797070:CDS 45.0%
! AGACCTTTCAAGTAGGGTTC+TGG - chr5_3:9177772-9177791 None:intergenic 45.0%
GAATCCTGCAACGACAAAAC+AGG - chr5_3:9177894-9177913 None:intergenic 45.0%
TCGTTGCAGGATTCTGTTTC+AGG + chr5_3:9177900-9177919 Msa0797070:intron 45.0%
TATATCTACCCGAAACCCAG+AGG + chr5_3:9177962-9177981 Msa0797070:CDS 45.0%
CAGTAAATCCTCTGGGTTTC+GGG - chr5_3:9177973-9177992 None:intergenic 45.0%
CTCCCATCAGTAAATCCTCT+GGG - chr5_3:9177980-9177999 None:intergenic 45.0%
TCCAAAATTGTGGGCAGCAT+TGG + chr5_3:9178034-9178053 Msa0797070:CDS 45.0%
! TCCAATGCTGCCCACAATTT+TGG - chr5_3:9178038-9178057 None:intergenic 45.0%
!! TTTATTGAATTATTATAAAT+TGG + chr5_3:9177247-9177266 Msa0797070:intron 5.0%
!! TTTATTGAATTATTATAAAT+TGG + chr5_3:9177247-9177266 Msa0797070:intron 5.0%
CTTCCGAGAATTCCGTCGAA+AGG + chr5_3:9176455-9176474 Msa0797070:CDS 50.0%
ATTGCCTTGGATCTCTTCCC+TGG + chr5_3:9177405-9177424 Msa0797070:CDS 50.0%
ATCACCAGGGAAGAGATCCA+AGG - chr5_3:9177412-9177431 None:intergenic 50.0%
TGGATCTCTTCCCTGGTGAT+CGG + chr5_3:9177412-9177431 Msa0797070:CDS 50.0%
GCTCCCATCAGTAAATCCTC+TGG - chr5_3:9177981-9178000 None:intergenic 50.0%
GTGCGACCGGCATAATTTCT+TGG + chr5_3:9178101-9178120 Msa0797070:three_prime_UTR 50.0%
GGCTATGAAGGTCAATGCCA+AGG + chr5_3:9178277-9178296 Msa0797070:three_prime_UTR 50.0%
CTTCCGAGAATTCCGTCGAA+AGG + chr5_3:9176455-9176474 Msa0797070:CDS 50.0%
ATTGCCTTGGATCTCTTCCC+TGG + chr5_3:9177405-9177424 Msa0797070:CDS 50.0%
ATCACCAGGGAAGAGATCCA+AGG - chr5_3:9177412-9177431 None:intergenic 50.0%
TGGATCTCTTCCCTGGTGAT+CGG + chr5_3:9177412-9177431 Msa0797070:CDS 50.0%
GCTCCCATCAGTAAATCCTC+TGG - chr5_3:9177981-9178000 None:intergenic 50.0%
GTGCGACCGGCATAATTTCT+TGG + chr5_3:9178101-9178120 Msa0797070:three_prime_UTR 50.0%
GGCTATGAAGGTCAATGCCA+AGG + chr5_3:9178277-9178296 Msa0797070:three_prime_UTR 50.0%
! TAAGTGGGTGGCGGCATATG+CGG + chr5_3:9176320-9176339 Msa0797070:five_prime_UTR 55.0%
!! TTGGCGGATTCCATTCGTCG+TGG + chr5_3:9176360-9176379 Msa0797070:five_prime_UTR 55.0%
GGATCTCTTCCCTGGTGATC+GGG + chr5_3:9177413-9177432 Msa0797070:CDS 55.0%
AACCTCGTTCCCGATCACCA+GGG - chr5_3:9177425-9177444 None:intergenic 55.0%
AAACCTCGTTCCCGATCACC+AGG - chr5_3:9177426-9177445 None:intergenic 55.0%
AGTTCAGGGGGAGGTGAGTA+GGG - chr5_3:9177490-9177509 None:intergenic 55.0%
TAGTTCAGGGGGAGGTGAGT+AGG - chr5_3:9177491-9177510 None:intergenic 55.0%
TGGGGATATAGTTCAGGGGG+AGG - chr5_3:9177499-9177518 None:intergenic 55.0%
!! GTAGGGTTCTGGATGAGGCT+TGG - chr5_3:9177761-9177780 None:intergenic 55.0%
! CGGACCTGTTTTGTCGTTGC+AGG + chr5_3:9177887-9177906 Msa0797070:intron 55.0%
ATCAAAGCAGGAGTCGCTGC+TGG + chr5_3:9177924-9177943 Msa0797070:CDS 55.0%
TCAAAGCAGGAGTCGCTGCT+GGG + chr5_3:9177925-9177944 Msa0797070:CDS 55.0%
GCTGCTGGGATGCCTGTTAT+TGG + chr5_3:9177939-9177958 Msa0797070:CDS 55.0%
CATGTGAGAGAGAGTGAGGG+AGG + chr5_3:9178310-9178329 Msa0797070:three_prime_UTR 55.0%
TGAGAGAGAGTGAGGGAGGA+AGG + chr5_3:9178314-9178333 Msa0797070:three_prime_UTR 55.0%
GAGAGAGAGTGAGGGAGGAA+GGG + chr5_3:9178315-9178334 Msa0797070:three_prime_UTR 55.0%
! TAAGTGGGTGGCGGCATATG+CGG + chr5_3:9176320-9176339 Msa0797070:five_prime_UTR 55.0%
!! TTGGCGGATTCCATTCGTCG+TGG + chr5_3:9176360-9176379 Msa0797070:five_prime_UTR 55.0%
GGATCTCTTCCCTGGTGATC+GGG + chr5_3:9177413-9177432 Msa0797070:CDS 55.0%
AACCTCGTTCCCGATCACCA+GGG - chr5_3:9177425-9177444 None:intergenic 55.0%
AAACCTCGTTCCCGATCACC+AGG - chr5_3:9177426-9177445 None:intergenic 55.0%
AGTTCAGGGGGAGGTGAGTA+GGG - chr5_3:9177490-9177509 None:intergenic 55.0%
TAGTTCAGGGGGAGGTGAGT+AGG - chr5_3:9177491-9177510 None:intergenic 55.0%
TGGGGATATAGTTCAGGGGG+AGG - chr5_3:9177499-9177518 None:intergenic 55.0%
!! GTAGGGTTCTGGATGAGGCT+TGG - chr5_3:9177761-9177780 None:intergenic 55.0%
! CGGACCTGTTTTGTCGTTGC+AGG + chr5_3:9177887-9177906 Msa0797070:intron 55.0%
ATCAAAGCAGGAGTCGCTGC+TGG + chr5_3:9177924-9177943 Msa0797070:CDS 55.0%
TCAAAGCAGGAGTCGCTGCT+GGG + chr5_3:9177925-9177944 Msa0797070:CDS 55.0%
GCTGCTGGGATGCCTGTTAT+TGG + chr5_3:9177939-9177958 Msa0797070:CDS 55.0%
CATGTGAGAGAGAGTGAGGG+AGG + chr5_3:9178310-9178329 Msa0797070:three_prime_UTR 55.0%
TGAGAGAGAGTGAGGGAGGA+AGG + chr5_3:9178314-9178333 Msa0797070:three_prime_UTR 55.0%
GAGAGAGAGTGAGGGAGGAA+GGG + chr5_3:9178315-9178334 Msa0797070:three_prime_UTR 55.0%
TTCCCTGGTGATCGGGAACG+AGG + chr5_3:9177420-9177439 Msa0797070:CDS 60.0%
AGAGAGTGAGGGAGGAAGGG+AGG + chr5_3:9178318-9178337 Msa0797070:three_prime_UTR 60.0%
GAGAGTGAGGGAGGAAGGGA+GGG + chr5_3:9178319-9178338 Msa0797070:three_prime_UTR 60.0%
TTCCCTGGTGATCGGGAACG+AGG + chr5_3:9177420-9177439 Msa0797070:CDS 60.0%
AGAGAGTGAGGGAGGAAGGG+AGG + chr5_3:9178318-9178337 Msa0797070:three_prime_UTR 60.0%
GAGAGTGAGGGAGGAAGGGA+GGG + chr5_3:9178319-9178338 Msa0797070:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 9176258 9178392 9176258 ID=Msa0797070;Name=Msa0797070
chr5_3 mRNA 9176258 9178392 9176258 ID=Msa0797070-mRNA-1;Parent=Msa0797070;Name=Msa0797070-mRNA-1;_AED=0.04;_eAED=0.04;_QI=190|0.75|0.8|1|1|1|5|307|245
chr5_3 exon 9176258 9176476 9176258 ID=Msa0797070-mRNA-1:exon:3883;Parent=Msa0797070-mRNA-1
chr5_3 exon 9177075 9177192 9177075 ID=Msa0797070-mRNA-1:exon:3884;Parent=Msa0797070-mRNA-1
chr5_3 exon 9177330 9177481 9177330 ID=Msa0797070-mRNA-1:exon:3885;Parent=Msa0797070-mRNA-1
chr5_3 exon 9177573 9177834 9177573 ID=Msa0797070-mRNA-1:exon:3886;Parent=Msa0797070-mRNA-1
chr5_3 exon 9177909 9178392 9177909 ID=Msa0797070-mRNA-1:exon:3887;Parent=Msa0797070-mRNA-1
chr5_3 five_prime_UTR 9176258 9176447 9176258 ID=Msa0797070-mRNA-1:five_prime_utr;Parent=Msa0797070-mRNA-1
chr5_3 CDS 9176448 9176476 9176448 ID=Msa0797070-mRNA-1:cds;Parent=Msa0797070-mRNA-1
chr5_3 CDS 9177075 9177192 9177075 ID=Msa0797070-mRNA-1:cds;Parent=Msa0797070-mRNA-1
chr5_3 CDS 9177330 9177481 9177330 ID=Msa0797070-mRNA-1:cds;Parent=Msa0797070-mRNA-1
chr5_3 CDS 9177573 9177834 9177573 ID=Msa0797070-mRNA-1:cds;Parent=Msa0797070-mRNA-1
chr5_3 CDS 9177909 9178085 9177909 ID=Msa0797070-mRNA-1:cds;Parent=Msa0797070-mRNA-1
chr5_3 three_prime_UTR 9178086 9178392 9178086 ID=Msa0797070-mRNA-1:three_prime_utr;Parent=Msa0797070-mRNA-1
Gene Sequence

>Msa0797070

ATGGCTACTTCCGAGAATTCCGTCGAAAGCAGCAAGAGTTCTCTTACCAAACTTGCTCCAATTGAAGCAGTGCTGTTTGATATAGACGGAACTCTTTGTGATTCTGACCCAATCCACTATTATGCTTTTCGTGAAATGCTTCAAGAGATTGGTTTCAATGGAGGTAATCCTATAACAGAGGAATTTTTTATTGCGACCGTTGCTGGCAAGCACAATGATGACATTGCCTTGGATCTCTTCCCTGGTGATCGGGAACGAGGTTTAAAGTTTGTAGAAGATAAGGAAGCCATGTTTCGGAGATTAGCAGCTGAGCAACTGAAGCCGTTAAATGGCCTTGATAAAGTGAGGAAATGGATTGAAGATCGTGGATTGAAGCGAGCTGCAGTTACCAATGCTCCAAGACCAAATGCAGAACTCATTCTCTCAAAACTTGGTCTCTCAGATTTCTTTCATGCTGTTATTATTGGTGATGAATGTGAACATGCCAAGCCTCATCCAGAACCCTACTTGAAAGGTCTTGAAGCTCTCAAAGCATCTAAGGATCACACATTTATATTTGAGGATTCTGTTTCAGGAATCAAAGCAGGAGTCGCTGCTGGGATGCCTGTTATTGGTATATCTACCCGAAACCCAGAGGATTTACTGATGGGAGCAAAGCCTGCCTTTCTGATAAAGGATTATGATGATCCAAAATTGTGGGCAGCATTGGAAGAACTTGACAAGTCCGGTTCTCATTAA
Protein sequence

>Msa0797070

MATSENSVESSKSSLTKLAPIEAVLFDIDGTLCDSDPIHYYAFREMLQEIGFNGGNPITEEFFIATVAGKHNDDIALDLFPGDRERGLKFVEDKEAMFRRLAAEQLKPLNGLDKVRKWIEDRGLKRAAVTNAPRPNAELILSKLGLSDFFHAVIIGDECEHAKPHPEPYLKGLEALKASKDHTFIFEDSVSGIKAGVAAGMPVIGISTRNPEDLLMGAKPAFLIKDYDDPKLWAALEELDKSGSH*