Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331060 | XP_013464447.1 | 96.970 | 264 | 8 | 0 | 1 | 264 | 158 | 421 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331060 | sp|Q8S948|SPS1_ARATH | 79.923 | 259 | 52 | 0 | 5 | 263 | 147 | 405 | 1.81e-152 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0293000 | Msa0331060 | 0.881960 | 1.553901e-70 | -8.615850e-47 |
| Msa0331060 | Msa0490200 | 0.823298 | 1.493108e-53 | -8.615850e-47 |
| Msa0331060 | Msa0755220 | 0.810668 | 1.028113e-50 | -8.615850e-47 |
| Msa0331060 | Msa0755250 | 0.810963 | 8.877057e-51 | -8.615850e-47 |
| Msa0331060 | Msa0797070 | 0.823919 | 1.068498e-53 | -8.615850e-47 |
| Msa0331060 | Msa1066950 | 0.824203 | 9.164621e-54 | -8.615850e-47 |
| Msa0331060 | Msa1355490 | 0.814267 | 1.680887e-51 | -8.615850e-47 |
| Msa0331060 | Msa1434780 | 0.814701 | 1.347605e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331060 | MtrunA17_Chr2g0313871 | 96.970 | 264 | 8 | 0 | 1 | 264 | 158 | 421 | 0.0 | 521 |
| Msa0331060 | MtrunA17_Chr4g0053631 | 42.678 | 239 | 137 | 0 | 6 | 244 | 153 | 391 | 9.56e-68 | 215 |
| Msa0331060 | MtrunA17_Chr8g0373601 | 38.378 | 185 | 103 | 3 | 18 | 191 | 149 | 333 | 7.08e-31 | 118 |
| Msa0331060 | MtrunA17_Chr5g0403581 | 38.220 | 191 | 107 | 3 | 18 | 197 | 148 | 338 | 8.84e-31 | 117 |
| Msa0331060 | MtrunA17_Chr8g0375771 | 26.490 | 151 | 102 | 3 | 18 | 160 | 232 | 381 | 3.74e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331060 | AT1G78510.2 | 79.923 | 259 | 52 | 0 | 5 | 263 | 108 | 366 | 8.33e-154 | 433 |
| Msa0331060 | AT1G78510.1 | 79.923 | 259 | 52 | 0 | 5 | 263 | 147 | 405 | 1.84e-153 | 434 |
| Msa0331060 | AT1G17050.1 | 77.992 | 259 | 57 | 0 | 5 | 263 | 158 | 416 | 3.49e-152 | 431 |
| Msa0331060 | AT2G34630.1 | 41.909 | 241 | 140 | 0 | 6 | 246 | 57 | 297 | 7.44e-68 | 213 |
| Msa0331060 | AT2G34630.2 | 42.259 | 239 | 138 | 0 | 6 | 244 | 158 | 396 | 3.20e-66 | 212 |
| Msa0331060 | AT2G18620.1 | 41.791 | 201 | 103 | 6 | 18 | 205 | 123 | 322 | 5.05e-32 | 120 |
| Msa0331060 | AT4G36810.1 | 42.105 | 190 | 93 | 6 | 18 | 191 | 144 | 332 | 2.07e-31 | 119 |
| Msa0331060 | AT2G18640.1 | 39.459 | 185 | 101 | 4 | 18 | 191 | 149 | 333 | 7.51e-30 | 115 |
| Msa0331060 | AT3G14510.1 | 38.614 | 202 | 110 | 4 | 18 | 205 | 58 | 259 | 3.68e-29 | 112 |
| Msa0331060 | AT3G20160.1 | 37.234 | 188 | 103 | 5 | 18 | 191 | 119 | 305 | 9.14e-28 | 109 |
| Msa0331060 | AT2G23800.1 | 37.634 | 186 | 103 | 6 | 18 | 191 | 153 | 337 | 2.54e-24 | 100 |
| Msa0331060 | AT3G32040.1 | 37.129 | 202 | 113 | 4 | 18 | 205 | 134 | 335 | 4.14e-24 | 99.8 |
| Msa0331060 | AT3G29430.1 | 37.129 | 202 | 113 | 4 | 18 | 205 | 131 | 332 | 9.16e-23 | 96.3 |
| Msa0331060 | AT3G14530.1 | 37.129 | 202 | 113 | 5 | 18 | 205 | 134 | 335 | 1.36e-22 | 95.5 |
| Msa0331060 | AT3G20160.2 | 34.254 | 181 | 90 | 5 | 18 | 191 | 119 | 277 | 1.53e-22 | 94.7 |
| Msa0331060 | AT3G14550.3 | 37.129 | 202 | 113 | 5 | 18 | 205 | 134 | 335 | 1.60e-22 | 95.5 |
| Msa0331060 | AT3G14550.1 | 37.129 | 202 | 113 | 5 | 18 | 205 | 134 | 335 | 1.60e-22 | 95.5 |
| Msa0331060 | AT3G14550.2 | 37.129 | 202 | 113 | 5 | 18 | 205 | 134 | 335 | 1.60e-22 | 95.5 |
| Msa0331060 | AT1G49530.1 | 31.217 | 189 | 114 | 4 | 18 | 190 | 108 | 296 | 7.31e-19 | 85.1 |
Find 50 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCAACGCGAAAATTAC+AGG | 0.258160 | 2_4:+46418667 | None:intergenic |
| CCAGATCCAAGAAAATAAAA+TGG | 0.265102 | 2_4:+46418204 | None:intergenic |
| TTGATTGCTGCCAGCGTAAA+AGG | 0.270096 | 2_4:-46418862 | Msa0331060:CDS |
| GAAACTGTTCATCAAATGTT+TGG | 0.338601 | 2_4:-46419394 | Msa0331060:CDS |
| CCAAGTTGTCGACGACATAT+TGG | 0.347498 | 2_4:-46418761 | Msa0331060:CDS |
| ATCTTGAAATGAATGATTGC+AGG | 0.364374 | 2_4:-46419984 | None:intergenic |
| TCAATGATATCCCTCAATTT+CGG | 0.393056 | 2_4:+46418640 | None:intergenic |
| CAGATCCAAGAAAATAAAAT+GGG | 0.409484 | 2_4:+46418205 | None:intergenic |
| AGGAGCTGTCAGGTTACCTT+TGG | 0.418601 | 2_4:+46418687 | None:intergenic |
| CCAATATGTCGTCGACAACT+TGG | 0.427937 | 2_4:+46418761 | None:intergenic |
| GAAGGTGTTGATGGATTTGT+TGG | 0.430526 | 2_4:+46418345 | None:intergenic |
| GAGTCTGAATTTAGCGAGAT+TGG | 0.432083 | 2_4:-46418619 | Msa0331060:CDS |
| ACTGAGAAAATGTTCGAATA+CGG | 0.446574 | 2_4:-46418805 | Msa0331060:CDS |
| GCACAAAGGGAAGGTGTTGA+TGG | 0.450868 | 2_4:+46418336 | None:intergenic |
| ATCAAGTTGGTTAAGAGTTG+TGG | 0.459670 | 2_4:-46418580 | Msa0331060:CDS |
| AGCTTGCTTTATTTCTCCAC+TGG | 0.468481 | 2_4:+46418954 | None:intergenic |
| TCAAGTTGGTTAAGAGTTGT+GGG | 0.479565 | 2_4:-46418579 | Msa0331060:CDS |
| TTGGCGAGGTCCGTGCATGC+AGG | 0.492317 | 2_4:+46418706 | None:intergenic |
| ACAAGAGTGGCAGTGCTGGC+TGG | 0.494391 | 2_4:-46419370 | Msa0331060:CDS |
| TTTCTTGGATCTGGTTGTAA+GGG | 0.496646 | 2_4:-46418195 | Msa0331060:three_prime_UTR |
| ACGCAATCGGCAGAGCAACT+TGG | 0.497280 | 2_4:-46418733 | Msa0331060:CDS |
| CGAAAATTACAGGAGCTGTC+AGG | 0.497944 | 2_4:+46418677 | None:intergenic |
| TTCGAATACGGGAAGAATCT+CGG | 0.498347 | 2_4:-46418793 | Msa0331060:CDS |
| TGGAACAAGAGTGGCAGTGC+TGG | 0.503897 | 2_4:-46419374 | Msa0331060:CDS |
| TGGAGAAAGAACCGAAATTG+AGG | 0.505243 | 2_4:-46418651 | Msa0331060:CDS |
| CTGAGAAAATGTTCGAATAC+GGG | 0.508576 | 2_4:-46418804 | Msa0331060:CDS |
| CATATTGGATTTCACGCAAT+CGG | 0.510526 | 2_4:-46418746 | Msa0331060:CDS |
| TCATGTTTGCACAATCATCA+TGG | 0.521316 | 2_4:-46419342 | Msa0331060:CDS |
| GCTAAACGATACACACTTGG+AGG | 0.522408 | 2_4:+46418487 | None:intergenic |
| AGTCATTAAACTTATCAGCC+AGG | 0.530858 | 2_4:-46419293 | Msa0331060:intron |
| GGAGAAAGAACCGAAATTGA+GGG | 0.533563 | 2_4:-46418650 | Msa0331060:CDS |
| GATGAGAGTGACATGAGAAG+AGG | 0.542931 | 2_4:-46419880 | Msa0331060:intron |
| ACTTGGAAAGCCTGCATGCA+CGG | 0.542947 | 2_4:-46418716 | Msa0331060:CDS |
| TCGTTTAGCTCTTGAGGACA+TGG | 0.571941 | 2_4:-46418473 | Msa0331060:CDS |
| TCTTGAAATGAATGATTGCA+GGG | 0.573966 | 2_4:-46419983 | None:intergenic |
| TGGTGACATATAATCTTCAA+AGG | 0.582035 | 2_4:-46418453 | Msa0331060:CDS |
| AATCGAAAGAGCACAAGAGT+TGG | 0.582560 | 2_4:-46418554 | Msa0331060:CDS |
| GCATGCACGGACCTCGCCAA+AGG | 0.584554 | 2_4:-46418703 | Msa0331060:CDS |
| TGTGTATCGTTTAGCTCTTG+AGG | 0.586196 | 2_4:-46418479 | Msa0331060:CDS |
| AAGTTGGTTAAGAGTTGTGG+GGG | 0.591345 | 2_4:-46418577 | Msa0331060:CDS |
| ATCCTTCAATGTCTATACAC+TGG | 0.592925 | 2_4:+46418299 | None:intergenic |
| TATGTCGTCGACAACTTGGA+AGG | 0.598026 | 2_4:+46418765 | None:intergenic |
| TACCAGTGTATAGACATTGA+AGG | 0.605637 | 2_4:-46418301 | Msa0331060:three_prime_UTR |
| TCAAATGTTTGGAACAAGAG+TGG | 0.606800 | 2_4:-46419383 | Msa0331060:CDS |
| CTGTCAGGTTACCTTTGGCG+AGG | 0.615618 | 2_4:+46418692 | None:intergenic |
| TCTTGACGAAGCGATCAAGT+TGG | 0.618929 | 2_4:-46418593 | Msa0331060:CDS |
| AGAGCTAAACGATACACACT+TGG | 0.629738 | 2_4:+46418484 | None:intergenic |
| CAAGTTGGTTAAGAGTTGTG+GGG | 0.643343 | 2_4:-46418578 | Msa0331060:CDS |
| AGATCCAAGAAAATAAAATG+GGG | 0.695397 | 2_4:+46418206 | None:intergenic |
| TACGCTGGCAGCAATCAAGG+AGG | 0.714158 | 2_4:+46418867 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAAAAAATCATTATTT+CGG | - | chr2_4:46419091-46419110 | Msa0331060:intron | 10.0% |
| !! | TAATGAAAAAATCATTATTT+CGG | - | chr2_4:46419091-46419110 | Msa0331060:intron | 10.0% |
| !! | TGATCAAATAAATTATAACA+TGG | + | chr2_4:46418446-46418465 | None:intergenic | 15.0% |
| !!! | TTTTAAAAGTTGTATAATGA+TGG | + | chr2_4:46418910-46418929 | None:intergenic | 15.0% |
| !!! | TTTTATTATTGCAAAACTTT+TGG | - | chr2_4:46419168-46419187 | Msa0331060:intron | 15.0% |
| !! | TGATCAAATAAATTATAACA+TGG | + | chr2_4:46418446-46418465 | None:intergenic | 15.0% |
| !!! | TTTTAAAAGTTGTATAATGA+TGG | + | chr2_4:46418910-46418929 | None:intergenic | 15.0% |
| !!! | TTTTATTATTGCAAAACTTT+TGG | - | chr2_4:46419168-46419187 | Msa0331060:intron | 15.0% |
| !! | ATTTCTAAATAAGTATCACT+AGG | + | chr2_4:46418320-46418339 | None:intergenic | 20.0% |
| !! | GTGATGTCAAAAATATTAAA+CGG | + | chr2_4:46418345-46418364 | None:intergenic | 20.0% |
| !!! | TTTGACATCACTTTATTTTT+CGG | - | chr2_4:46418354-46418373 | Msa0331060:three_prime_UTR | 20.0% |
| !!! | TAACTTGCTTTCAAATAATA+GGG | - | chr2_4:46418751-46418770 | Msa0331060:CDS | 20.0% |
| !! | AGTAATTGATATCCATTTAA+GGG | + | chr2_4:46419027-46419046 | None:intergenic | 20.0% |
| !! | AAGTAATTGATATCCATTTA+AGG | + | chr2_4:46419028-46419047 | None:intergenic | 20.0% |
| !! | TAAAAACAATGTTTAGAAAC+TGG | + | chr2_4:46419153-46419172 | None:intergenic | 20.0% |
| !! | ATTTCTAAATAAGTATCACT+AGG | + | chr2_4:46418320-46418339 | None:intergenic | 20.0% |
| !! | GTGATGTCAAAAATATTAAA+CGG | + | chr2_4:46418345-46418364 | None:intergenic | 20.0% |
| !!! | TTTGACATCACTTTATTTTT+CGG | - | chr2_4:46418354-46418373 | Msa0331060:three_prime_UTR | 20.0% |
| !!! | TAACTTGCTTTCAAATAATA+GGG | - | chr2_4:46418751-46418770 | Msa0331060:CDS | 20.0% |
| !! | AGTAATTGATATCCATTTAA+GGG | + | chr2_4:46419027-46419046 | None:intergenic | 20.0% |
| !! | AAGTAATTGATATCCATTTA+AGG | + | chr2_4:46419028-46419047 | None:intergenic | 20.0% |
| !! | TAAAAACAATGTTTAGAAAC+TGG | + | chr2_4:46419153-46419172 | None:intergenic | 20.0% |
| !!! | CCATTTTTCTCAAACTTTAT+GGG | - | chr2_4:46418396-46418415 | Msa0331060:three_prime_UTR | 25.0% |
| ! | TGGTATATACTTTCATAGAA+AGG | - | chr2_4:46418629-46418648 | Msa0331060:CDS | 25.0% |
| ! | TTGATGGAAAAGAAAAAACA+AGG | + | chr2_4:46418686-46418705 | None:intergenic | 25.0% |
| !!! | CTAACTTGCTTTCAAATAAT+AGG | - | chr2_4:46418750-46418769 | Msa0331060:CDS | 25.0% |
| !! | TAATGACTTCAATGTTTTCA+AGG | + | chr2_4:46418866-46418885 | None:intergenic | 25.0% |
| ! | GTAATTGATATCCATTTAAG+GGG | + | chr2_4:46419026-46419045 | None:intergenic | 25.0% |
| ! | AATGGATATCAATTACTTCA+AGG | - | chr2_4:46419030-46419049 | Msa0331060:intron | 25.0% |
| ! | ATGGATATCAATTACTTCAA+GGG | - | chr2_4:46419031-46419050 | Msa0331060:intron | 25.0% |
| !!! | TTTTCCCCATTTTATTTTCT+TGG | - | chr2_4:46419961-46419980 | Msa0331060:CDS | 25.0% |
| ! | AGATCCAAGAAAATAAAATG+GGG | + | chr2_4:46419968-46419987 | None:intergenic | 25.0% |
| ! | CAGATCCAAGAAAATAAAAT+GGG | + | chr2_4:46419969-46419988 | None:intergenic | 25.0% |
| !!! | CCATTTTTCTCAAACTTTAT+GGG | - | chr2_4:46418396-46418415 | Msa0331060:three_prime_UTR | 25.0% |
| ! | TGGTATATACTTTCATAGAA+AGG | - | chr2_4:46418629-46418648 | Msa0331060:CDS | 25.0% |
| ! | TTGATGGAAAAGAAAAAACA+AGG | + | chr2_4:46418686-46418705 | None:intergenic | 25.0% |
| !!! | CTAACTTGCTTTCAAATAAT+AGG | - | chr2_4:46418750-46418769 | Msa0331060:CDS | 25.0% |
| !! | TAATGACTTCAATGTTTTCA+AGG | + | chr2_4:46418866-46418885 | None:intergenic | 25.0% |
| ! | GTAATTGATATCCATTTAAG+GGG | + | chr2_4:46419026-46419045 | None:intergenic | 25.0% |
| ! | AATGGATATCAATTACTTCA+AGG | - | chr2_4:46419030-46419049 | Msa0331060:intron | 25.0% |
| ! | ATGGATATCAATTACTTCAA+GGG | - | chr2_4:46419031-46419050 | Msa0331060:intron | 25.0% |
| !!! | TTTTCCCCATTTTATTTTCT+TGG | - | chr2_4:46419961-46419980 | Msa0331060:CDS | 25.0% |
| ! | AGATCCAAGAAAATAAAATG+GGG | + | chr2_4:46419968-46419987 | None:intergenic | 25.0% |
| ! | CAGATCCAAGAAAATAAAAT+GGG | + | chr2_4:46419969-46419988 | None:intergenic | 25.0% |
| AGTTTGAGAAAAATGGCTTT+AGG | + | chr2_4:46418392-46418411 | None:intergenic | 30.0% | |
| !!! | GCCATTTTTCTCAAACTTTA+TGG | - | chr2_4:46418395-46418414 | Msa0331060:three_prime_UTR | 30.0% |
| CCCATAAAGTTTGAGAAAAA+TGG | + | chr2_4:46418399-46418418 | None:intergenic | 30.0% | |
| ATTTCCTTTACACATGCATA+TGG | - | chr2_4:46418469-46418488 | Msa0331060:CDS | 30.0% | |
| TTTGTCAATAATCCTTCAGA+AGG | + | chr2_4:46418608-46418627 | None:intergenic | 30.0% | |
| CTGAAGGATTATTGACAAAT+TGG | - | chr2_4:46418609-46418628 | Msa0331060:CDS | 30.0% | |
| TTGCTTTCAAATAATAGGGA+AGG | - | chr2_4:46418755-46418774 | Msa0331060:CDS | 30.0% | |
| GAAACTGTTCATCAAATGTT+TGG | - | chr2_4:46418777-46418796 | Msa0331060:CDS | 30.0% | |
| ATACGTTCTTTCATATTCAC+CGG | + | chr2_4:46418988-46419007 | None:intergenic | 30.0% | |
| AATATGAAAGAACGTATGCT+AGG | - | chr2_4:46418991-46419010 | Msa0331060:intron | 30.0% | |
| TATCAATTACTTCAAGGGAT+TGG | - | chr2_4:46419036-46419055 | Msa0331060:intron | 30.0% | |
| ATCAATTACTTCAAGGGATT+GGG | - | chr2_4:46419037-46419056 | Msa0331060:intron | 30.0% | |
| ACTGAGAAAATGTTCGAATA+CGG | - | chr2_4:46419366-46419385 | Msa0331060:CDS | 30.0% | |
| TCAATGATATCCCTCAATTT+CGG | + | chr2_4:46419534-46419553 | None:intergenic | 30.0% | |
| TGGTGACATATAATCTTCAA+AGG | - | chr2_4:46419718-46419737 | Msa0331060:intron | 30.0% | |
| CCAGATCCAAGAAAATAAAA+TGG | + | chr2_4:46419970-46419989 | None:intergenic | 30.0% | |
| !!! | CCATTTTATTTTCTTGGATC+TGG | - | chr2_4:46419967-46419986 | Msa0331060:CDS | 30.0% |
| AGTTTGAGAAAAATGGCTTT+AGG | + | chr2_4:46418392-46418411 | None:intergenic | 30.0% | |
| !!! | GCCATTTTTCTCAAACTTTA+TGG | - | chr2_4:46418395-46418414 | Msa0331060:three_prime_UTR | 30.0% |
| CCCATAAAGTTTGAGAAAAA+TGG | + | chr2_4:46418399-46418418 | None:intergenic | 30.0% | |
| ATTTCCTTTACACATGCATA+TGG | - | chr2_4:46418469-46418488 | Msa0331060:CDS | 30.0% | |
| TTTGTCAATAATCCTTCAGA+AGG | + | chr2_4:46418608-46418627 | None:intergenic | 30.0% | |
| CTGAAGGATTATTGACAAAT+TGG | - | chr2_4:46418609-46418628 | Msa0331060:CDS | 30.0% | |
| TTGCTTTCAAATAATAGGGA+AGG | - | chr2_4:46418755-46418774 | Msa0331060:CDS | 30.0% | |
| GAAACTGTTCATCAAATGTT+TGG | - | chr2_4:46418777-46418796 | Msa0331060:CDS | 30.0% | |
| ATACGTTCTTTCATATTCAC+CGG | + | chr2_4:46418988-46419007 | None:intergenic | 30.0% | |
| AATATGAAAGAACGTATGCT+AGG | - | chr2_4:46418991-46419010 | Msa0331060:intron | 30.0% | |
| TATCAATTACTTCAAGGGAT+TGG | - | chr2_4:46419036-46419055 | Msa0331060:intron | 30.0% | |
| ATCAATTACTTCAAGGGATT+GGG | - | chr2_4:46419037-46419056 | Msa0331060:intron | 30.0% | |
| ACTGAGAAAATGTTCGAATA+CGG | - | chr2_4:46419366-46419385 | Msa0331060:CDS | 30.0% | |
| TCAATGATATCCCTCAATTT+CGG | + | chr2_4:46419534-46419553 | None:intergenic | 30.0% | |
| TGGTGACATATAATCTTCAA+AGG | - | chr2_4:46419718-46419737 | Msa0331060:intron | 30.0% | |
| CCAGATCCAAGAAAATAAAA+TGG | + | chr2_4:46419970-46419989 | None:intergenic | 30.0% | |
| !!! | CCATTTTATTTTCTTGGATC+TGG | - | chr2_4:46419967-46419986 | Msa0331060:CDS | 30.0% |
| !!! | GGGCGTTTTGATTTTAATCT+TGG | - | chr2_4:46418416-46418435 | Msa0331060:three_prime_UTR | 35.0% |
| ATACATAGCAGATGTAGCTT+TGG | + | chr2_4:46418583-46418602 | None:intergenic | 35.0% | |
| GGAAATCAAATGTCACAGTT+TGG | + | chr2_4:46418665-46418684 | None:intergenic | 35.0% | |
| CAACATCGAGTTAGAATAGA+GGG | + | chr2_4:46418727-46418746 | None:intergenic | 35.0% | |
| ACAACATCGAGTTAGAATAG+AGG | + | chr2_4:46418728-46418747 | None:intergenic | 35.0% | |
| ! | TCAAATGTTTGGAACAAGAG+TGG | - | chr2_4:46418788-46418807 | Msa0331060:CDS | 35.0% |
| TCATGTTTGCACAATCATCA+TGG | - | chr2_4:46418829-46418848 | Msa0331060:CDS | 35.0% | |
| !! | GACTTCAATGTTTTCAAGGT+TGG | + | chr2_4:46418862-46418881 | None:intergenic | 35.0% |
| AGTCATTAAACTTATCAGCC+AGG | - | chr2_4:46418878-46418897 | Msa0331060:CDS | 35.0% | |
| ! | GTATAATGATGGAACTTACC+TGG | + | chr2_4:46418899-46418918 | None:intergenic | 35.0% |
| ! | GTGATTAAAGATTTTGCCAG+TGG | - | chr2_4:46419201-46419220 | Msa0331060:intron | 35.0% |
| CTGAGAAAATGTTCGAATAC+GGG | - | chr2_4:46419367-46419386 | Msa0331060:CDS | 35.0% | |
| CATATTGGATTTCACGCAAT+CGG | - | chr2_4:46419425-46419444 | Msa0331060:intron | 35.0% | |
| !! | ATCAAGTTGGTTAAGAGTTG+TGG | - | chr2_4:46419591-46419610 | Msa0331060:intron | 35.0% |
| !! | TCAAGTTGGTTAAGAGTTGT+GGG | - | chr2_4:46419592-46419611 | Msa0331060:intron | 35.0% |
| !!! | TTCCCTTTGTGCTACTTTTT+GGG | - | chr2_4:46419846-46419865 | Msa0331060:intron | 35.0% |
| TACCAGTGTATAGACATTGA+AGG | - | chr2_4:46419870-46419889 | Msa0331060:intron | 35.0% | |
| ATCCTTCAATGTCTATACAC+TGG | + | chr2_4:46419875-46419894 | None:intergenic | 35.0% | |
| ! | TTTTCTTGGATCTGGTTGTA+AGG | - | chr2_4:46419975-46419994 | Msa0331060:CDS | 35.0% |
| TTTCTTGGATCTGGTTGTAA+GGG | - | chr2_4:46419976-46419995 | Msa0331060:CDS | 35.0% | |
| !!! | GGGCGTTTTGATTTTAATCT+TGG | - | chr2_4:46418416-46418435 | Msa0331060:three_prime_UTR | 35.0% |
| ATACATAGCAGATGTAGCTT+TGG | + | chr2_4:46418583-46418602 | None:intergenic | 35.0% | |
| GGAAATCAAATGTCACAGTT+TGG | + | chr2_4:46418665-46418684 | None:intergenic | 35.0% | |
| CAACATCGAGTTAGAATAGA+GGG | + | chr2_4:46418727-46418746 | None:intergenic | 35.0% | |
| ACAACATCGAGTTAGAATAG+AGG | + | chr2_4:46418728-46418747 | None:intergenic | 35.0% | |
| ! | TCAAATGTTTGGAACAAGAG+TGG | - | chr2_4:46418788-46418807 | Msa0331060:CDS | 35.0% |
| TCATGTTTGCACAATCATCA+TGG | - | chr2_4:46418829-46418848 | Msa0331060:CDS | 35.0% | |
| !! | GACTTCAATGTTTTCAAGGT+TGG | + | chr2_4:46418862-46418881 | None:intergenic | 35.0% |
| AGTCATTAAACTTATCAGCC+AGG | - | chr2_4:46418878-46418897 | Msa0331060:CDS | 35.0% | |
| ! | GTATAATGATGGAACTTACC+TGG | + | chr2_4:46418899-46418918 | None:intergenic | 35.0% |
| ! | GTGATTAAAGATTTTGCCAG+TGG | - | chr2_4:46419201-46419220 | Msa0331060:intron | 35.0% |
| CTGAGAAAATGTTCGAATAC+GGG | - | chr2_4:46419367-46419386 | Msa0331060:CDS | 35.0% | |
| CATATTGGATTTCACGCAAT+CGG | - | chr2_4:46419425-46419444 | Msa0331060:intron | 35.0% | |
| !! | ATCAAGTTGGTTAAGAGTTG+TGG | - | chr2_4:46419591-46419610 | Msa0331060:intron | 35.0% |
| !! | TCAAGTTGGTTAAGAGTTGT+GGG | - | chr2_4:46419592-46419611 | Msa0331060:intron | 35.0% |
| !!! | TTCCCTTTGTGCTACTTTTT+GGG | - | chr2_4:46419846-46419865 | Msa0331060:intron | 35.0% |
| TACCAGTGTATAGACATTGA+AGG | - | chr2_4:46419870-46419889 | Msa0331060:intron | 35.0% | |
| ATCCTTCAATGTCTATACAC+TGG | + | chr2_4:46419875-46419894 | None:intergenic | 35.0% | |
| ! | TTTTCTTGGATCTGGTTGTA+AGG | - | chr2_4:46419975-46419994 | Msa0331060:CDS | 35.0% |
| CAGACCATATGCATGTGTAA+AGG | + | chr2_4:46418476-46418495 | None:intergenic | 40.0% | |
| TGCTATGTATCACCTTCTGA+AGG | - | chr2_4:46418593-46418612 | Msa0331060:CDS | 40.0% | |
| ! | TTCTTTTCCATCAACTCTGC+TGG | - | chr2_4:46418692-46418711 | Msa0331060:CDS | 40.0% |
| ATCATTCCAAGATTCAACCC+TGG | - | chr2_4:46418962-46418981 | Msa0331060:CDS | 40.0% | |
| GAAAGAACGTATGCTAGGAT+AGG | - | chr2_4:46418996-46419015 | Msa0331060:intron | 40.0% | |
| !! | CAAAACTTTTGGTGTGTGAC+AGG | - | chr2_4:46419179-46419198 | Msa0331060:intron | 40.0% |
| !! | AGCTTGCTTTATTTCTCCAC+TGG | + | chr2_4:46419220-46419239 | None:intergenic | 40.0% |
| TTCGAATACGGGAAGAATCT+CGG | - | chr2_4:46419378-46419397 | Msa0331060:CDS | 40.0% | |
| TTCTCCAACGCGAAAATTAC+AGG | + | chr2_4:46419507-46419526 | None:intergenic | 40.0% | |
| TGGAGAAAGAACCGAAATTG+AGG | - | chr2_4:46419520-46419539 | Msa0331060:intron | 40.0% | |
| GGAGAAAGAACCGAAATTGA+GGG | - | chr2_4:46419521-46419540 | Msa0331060:intron | 40.0% | |
| GAGTCTGAATTTAGCGAGAT+TGG | - | chr2_4:46419552-46419571 | Msa0331060:intron | 40.0% | |
| !! | CAAGTTGGTTAAGAGTTGTG+GGG | - | chr2_4:46419593-46419612 | Msa0331060:intron | 40.0% |
| ! | AAGTTGGTTAAGAGTTGTGG+GGG | - | chr2_4:46419594-46419613 | Msa0331060:intron | 40.0% |
| ! | AATCGAAAGAGCACAAGAGT+TGG | - | chr2_4:46419617-46419636 | Msa0331060:intron | 40.0% |
| AGAGCTAAACGATACACACT+TGG | + | chr2_4:46419690-46419709 | None:intergenic | 40.0% | |
| !! | TGTGTATCGTTTAGCTCTTG+AGG | - | chr2_4:46419692-46419711 | Msa0331060:intron | 40.0% |
| !! | GAAGGTGTTGATGGATTTGT+TGG | + | chr2_4:46419829-46419848 | None:intergenic | 40.0% |
| CAAAAAGTAGCACAAAGGGA+AGG | + | chr2_4:46419847-46419866 | None:intergenic | 40.0% | |
| !!! | CTTCCCTTTGTGCTACTTTT+TGG | - | chr2_4:46419845-46419864 | Msa0331060:intron | 40.0% |
| !!! | TCCCTTTGTGCTACTTTTTG+GGG | - | chr2_4:46419847-46419866 | Msa0331060:intron | 40.0% |
| ACCCCAAAAAGTAGCACAAA+GGG | + | chr2_4:46419851-46419870 | None:intergenic | 40.0% | |
| TACCCCAAAAAGTAGCACAA+AGG | + | chr2_4:46419852-46419871 | None:intergenic | 40.0% | |
| CAGACCATATGCATGTGTAA+AGG | + | chr2_4:46418476-46418495 | None:intergenic | 40.0% | |
| TGCTATGTATCACCTTCTGA+AGG | - | chr2_4:46418593-46418612 | Msa0331060:CDS | 40.0% | |
| ! | TTCTTTTCCATCAACTCTGC+TGG | - | chr2_4:46418692-46418711 | Msa0331060:CDS | 40.0% |
| ATCATTCCAAGATTCAACCC+TGG | - | chr2_4:46418962-46418981 | Msa0331060:CDS | 40.0% | |
| GAAAGAACGTATGCTAGGAT+AGG | - | chr2_4:46418996-46419015 | Msa0331060:intron | 40.0% | |
| !! | CAAAACTTTTGGTGTGTGAC+AGG | - | chr2_4:46419179-46419198 | Msa0331060:intron | 40.0% |
| !! | AGCTTGCTTTATTTCTCCAC+TGG | + | chr2_4:46419220-46419239 | None:intergenic | 40.0% |
| TTCGAATACGGGAAGAATCT+CGG | - | chr2_4:46419378-46419397 | Msa0331060:CDS | 40.0% | |
| TTCTCCAACGCGAAAATTAC+AGG | + | chr2_4:46419507-46419526 | None:intergenic | 40.0% | |
| TGGAGAAAGAACCGAAATTG+AGG | - | chr2_4:46419520-46419539 | Msa0331060:intron | 40.0% | |
| GGAGAAAGAACCGAAATTGA+GGG | - | chr2_4:46419521-46419540 | Msa0331060:intron | 40.0% | |
| GAGTCTGAATTTAGCGAGAT+TGG | - | chr2_4:46419552-46419571 | Msa0331060:intron | 40.0% | |
| !! | CAAGTTGGTTAAGAGTTGTG+GGG | - | chr2_4:46419593-46419612 | Msa0331060:intron | 40.0% |
| ! | AAGTTGGTTAAGAGTTGTGG+GGG | - | chr2_4:46419594-46419613 | Msa0331060:intron | 40.0% |
| ! | AATCGAAAGAGCACAAGAGT+TGG | - | chr2_4:46419617-46419636 | Msa0331060:intron | 40.0% |
| AGAGCTAAACGATACACACT+TGG | + | chr2_4:46419690-46419709 | None:intergenic | 40.0% | |
| !! | TGTGTATCGTTTAGCTCTTG+AGG | - | chr2_4:46419692-46419711 | Msa0331060:intron | 40.0% |
| !! | GAAGGTGTTGATGGATTTGT+TGG | + | chr2_4:46419829-46419848 | None:intergenic | 40.0% |
| CAAAAAGTAGCACAAAGGGA+AGG | + | chr2_4:46419847-46419866 | None:intergenic | 40.0% | |
| !!! | CTTCCCTTTGTGCTACTTTT+TGG | - | chr2_4:46419845-46419864 | Msa0331060:intron | 40.0% |
| !!! | TCCCTTTGTGCTACTTTTTG+GGG | - | chr2_4:46419847-46419866 | Msa0331060:intron | 40.0% |
| ACCCCAAAAAGTAGCACAAA+GGG | + | chr2_4:46419851-46419870 | None:intergenic | 40.0% | |
| TACCCCAAAAAGTAGCACAA+AGG | + | chr2_4:46419852-46419871 | None:intergenic | 40.0% | |
| GATGAGAGTGACATGAGAAG+AGG | - | chr2_4:46418291-46418310 | Msa0331060:three_prime_UTR | 45.0% | |
| ACTGAAACCAGCAGAGTTGA+TGG | + | chr2_4:46418702-46418721 | None:intergenic | 45.0% | |
| TCTTTCATATTCACCGGCCA+GGG | + | chr2_4:46418982-46419001 | None:intergenic | 45.0% | |
| TTCTTTCATATTCACCGGCC+AGG | + | chr2_4:46418983-46419002 | None:intergenic | 45.0% | |
| GGATAGGTCAACCCCTTAAA+TGG | - | chr2_4:46419012-46419031 | Msa0331060:intron | 45.0% | |
| ! | TTTTACGCTGGCAGCAATCA+AGG | + | chr2_4:46419310-46419329 | None:intergenic | 45.0% |
| TTGATTGCTGCCAGCGTAAA+AGG | - | chr2_4:46419309-46419328 | Msa0331060:CDS | 45.0% | |
| ! | AAAGGAGCTGCAGTTTTCAG+CGG | - | chr2_4:46419327-46419346 | Msa0331060:CDS | 45.0% |
| TATGTCGTCGACAACTTGGA+AGG | + | chr2_4:46419409-46419428 | None:intergenic | 45.0% | |
| CCAATATGTCGTCGACAACT+TGG | + | chr2_4:46419413-46419432 | None:intergenic | 45.0% | |
| CCAAGTTGTCGACGACATAT+TGG | - | chr2_4:46419410-46419429 | Msa0331060:intron | 45.0% | |
| CGAAAATTACAGGAGCTGTC+AGG | + | chr2_4:46419497-46419516 | None:intergenic | 45.0% | |
| ! | AGCTCCTGTAATTTTCGCGT+TGG | - | chr2_4:46419500-46419519 | Msa0331060:intron | 45.0% |
| TCTTGACGAAGCGATCAAGT+TGG | - | chr2_4:46419578-46419597 | Msa0331060:intron | 45.0% | |
| GCTAAACGATACACACTTGG+AGG | + | chr2_4:46419687-46419706 | None:intergenic | 45.0% | |
| !! | TCGTTTAGCTCTTGAGGACA+TGG | - | chr2_4:46419698-46419717 | Msa0331060:intron | 45.0% |
| GATGAGAGTGACATGAGAAG+AGG | - | chr2_4:46418291-46418310 | Msa0331060:three_prime_UTR | 45.0% | |
| ACTGAAACCAGCAGAGTTGA+TGG | + | chr2_4:46418702-46418721 | None:intergenic | 45.0% | |
| TCTTTCATATTCACCGGCCA+GGG | + | chr2_4:46418982-46419001 | None:intergenic | 45.0% | |
| TTCTTTCATATTCACCGGCC+AGG | + | chr2_4:46418983-46419002 | None:intergenic | 45.0% | |
| GGATAGGTCAACCCCTTAAA+TGG | - | chr2_4:46419012-46419031 | Msa0331060:intron | 45.0% | |
| ! | TTTTACGCTGGCAGCAATCA+AGG | + | chr2_4:46419310-46419329 | None:intergenic | 45.0% |
| TTGATTGCTGCCAGCGTAAA+AGG | - | chr2_4:46419309-46419328 | Msa0331060:CDS | 45.0% | |
| ! | AAAGGAGCTGCAGTTTTCAG+CGG | - | chr2_4:46419327-46419346 | Msa0331060:CDS | 45.0% |
| TATGTCGTCGACAACTTGGA+AGG | + | chr2_4:46419409-46419428 | None:intergenic | 45.0% | |
| CCAATATGTCGTCGACAACT+TGG | + | chr2_4:46419413-46419432 | None:intergenic | 45.0% | |
| CCAAGTTGTCGACGACATAT+TGG | - | chr2_4:46419410-46419429 | Msa0331060:intron | 45.0% | |
| CGAAAATTACAGGAGCTGTC+AGG | + | chr2_4:46419497-46419516 | None:intergenic | 45.0% | |
| ! | AGCTCCTGTAATTTTCGCGT+TGG | - | chr2_4:46419500-46419519 | Msa0331060:intron | 45.0% |
| TCTTGACGAAGCGATCAAGT+TGG | - | chr2_4:46419578-46419597 | Msa0331060:intron | 45.0% | |
| GCTAAACGATACACACTTGG+AGG | + | chr2_4:46419687-46419706 | None:intergenic | 45.0% | |
| !! | TCGTTTAGCTCTTGAGGACA+TGG | - | chr2_4:46419698-46419717 | Msa0331060:intron | 45.0% |
| TTCCAAGATTCAACCCTGGC+CGG | - | chr2_4:46418966-46418985 | Msa0331060:CDS | 50.0% | |
| ! | AACTGCAGCTCCTTTTACGC+TGG | + | chr2_4:46419322-46419341 | None:intergenic | 50.0% |
| ACTTGGAAAGCCTGCATGCA+CGG | - | chr2_4:46419455-46419474 | Msa0331060:intron | 50.0% | |
| AGGAGCTGTCAGGTTACCTT+TGG | + | chr2_4:46419487-46419506 | None:intergenic | 50.0% | |
| !! | GCACAAAGGGAAGGTGTTGA+TGG | + | chr2_4:46419838-46419857 | None:intergenic | 50.0% |
| TTCCAAGATTCAACCCTGGC+CGG | - | chr2_4:46418966-46418985 | Msa0331060:CDS | 50.0% | |
| ! | AACTGCAGCTCCTTTTACGC+TGG | + | chr2_4:46419322-46419341 | None:intergenic | 50.0% |
| ACTTGGAAAGCCTGCATGCA+CGG | - | chr2_4:46419455-46419474 | Msa0331060:intron | 50.0% | |
| AGGAGCTGTCAGGTTACCTT+TGG | + | chr2_4:46419487-46419506 | None:intergenic | 50.0% | |
| !! | GCACAAAGGGAAGGTGTTGA+TGG | + | chr2_4:46419838-46419857 | None:intergenic | 50.0% |
| TGGAACAAGAGTGGCAGTGC+TGG | - | chr2_4:46418797-46418816 | Msa0331060:CDS | 55.0% | |
| ACTTGCGCGCAGGGTTACTT+TGG | - | chr2_4:46419066-46419085 | Msa0331060:intron | 55.0% | |
| TACGCTGGCAGCAATCAAGG+AGG | + | chr2_4:46419307-46419326 | None:intergenic | 55.0% | |
| ACGCAATCGGCAGAGCAACT+TGG | - | chr2_4:46419438-46419457 | Msa0331060:intron | 55.0% | |
| CTGTCAGGTTACCTTTGGCG+AGG | + | chr2_4:46419482-46419501 | None:intergenic | 55.0% | |
| TGGAACAAGAGTGGCAGTGC+TGG | - | chr2_4:46418797-46418816 | Msa0331060:CDS | 55.0% | |
| ACTTGCGCGCAGGGTTACTT+TGG | - | chr2_4:46419066-46419085 | Msa0331060:intron | 55.0% | |
| TACGCTGGCAGCAATCAAGG+AGG | + | chr2_4:46419307-46419326 | None:intergenic | 55.0% | |
| ACGCAATCGGCAGAGCAACT+TGG | - | chr2_4:46419438-46419457 | Msa0331060:intron | 55.0% | |
| CTGTCAGGTTACCTTTGGCG+AGG | + | chr2_4:46419482-46419501 | None:intergenic | 55.0% | |
| !! | ACAAGAGTGGCAGTGCTGGC+TGG | - | chr2_4:46418801-46418820 | Msa0331060:CDS | 60.0% |
| CACCGGCCAGGGTTGAATCT+TGG | + | chr2_4:46418971-46418990 | None:intergenic | 60.0% | |
| AGTAACCCTGCGCGCAAGTG+TGG | + | chr2_4:46419065-46419084 | None:intergenic | 60.0% | |
| !! | ACAAGAGTGGCAGTGCTGGC+TGG | - | chr2_4:46418801-46418820 | Msa0331060:CDS | 60.0% |
| CACCGGCCAGGGTTGAATCT+TGG | + | chr2_4:46418971-46418990 | None:intergenic | 60.0% | |
| AGTAACCCTGCGCGCAAGTG+TGG | + | chr2_4:46419065-46419084 | None:intergenic | 60.0% | |
| TTGGCGAGGTCCGTGCATGC+AGG | + | chr2_4:46419468-46419487 | None:intergenic | 65.0% | |
| GCATGCACGGACCTCGCCAA+AGG | - | chr2_4:46419468-46419487 | Msa0331060:intron | 65.0% | |
| TTGGCGAGGTCCGTGCATGC+AGG | + | chr2_4:46419468-46419487 | None:intergenic | 65.0% | |
| GCATGCACGGACCTCGCCAA+AGG | - | chr2_4:46419468-46419487 | Msa0331060:intron | 65.0% | |
| TGGGCTCCACACTTGCGCGC+AGG | - | chr2_4:46419056-46419075 | Msa0331060:intron | 70.0% | |
| GGGCTCCACACTTGCGCGCA+GGG | - | chr2_4:46419057-46419076 | Msa0331060:intron | 70.0% | |
| TGGGCTCCACACTTGCGCGC+AGG | - | chr2_4:46419056-46419075 | Msa0331060:intron | 70.0% | |
| GGGCTCCACACTTGCGCGCA+GGG | - | chr2_4:46419057-46419076 | Msa0331060:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 46418195 | 46419998 | 46418195 | ID=Msa0331060;Name=Msa0331060 |
| chr2_4 | mRNA | 46418195 | 46419998 | 46418195 | ID=Msa0331060-mRNA-1;Parent=Msa0331060;Name=Msa0331060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.5|0.33|1|1|1|3|249|264 |
| chr2_4 | exon | 46418195 | 46418992 | 46418195 | ID=Msa0331060-mRNA-1:exon:14073;Parent=Msa0331060-mRNA-1 |
| chr2_4 | exon | 46419294 | 46419421 | 46419294 | ID=Msa0331060-mRNA-1:exon:14072;Parent=Msa0331060-mRNA-1 |
| chr2_4 | exon | 46419881 | 46419998 | 46419881 | ID=Msa0331060-mRNA-1:exon:14071;Parent=Msa0331060-mRNA-1 |
| chr2_4 | CDS | 46419881 | 46419998 | 46419881 | ID=Msa0331060-mRNA-1:cds;Parent=Msa0331060-mRNA-1 |
| chr2_4 | CDS | 46419294 | 46419421 | 46419294 | ID=Msa0331060-mRNA-1:cds;Parent=Msa0331060-mRNA-1 |
| chr2_4 | CDS | 46418444 | 46418992 | 46418444 | ID=Msa0331060-mRNA-1:cds;Parent=Msa0331060-mRNA-1 |
| chr2_4 | three_prime_UTR | 46418195 | 46418443 | 46418195 | ID=Msa0331060-mRNA-1:three_prime_utr;Parent=Msa0331060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
