AlfalfaGEDB | Msa0755250

M. sativa cultivar zhongmu-4 / Msa0755250

KEGG: -
GO: GO:0003674 GO:0003824 GO:0003850 GO:0004346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050308 GO:0050309 GO:0071944
PFAM: PF13419.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0755250	XP_024640187.1	99.592	245	1	0	1	245	1	245	7.65e-178	498

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0755250	sp\|Q9ZVJ5\|SGGP_ARATH	70.870	230	67	0	11	240	12	241	2.41e-122	350

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0755250	G7JYQ1	99.184	245	1	1	1	245	1	244	1.54e-175	491

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0293000	Msa0755250	0.803757	2.992660e-49	-8.615850e-47
Msa0331060	Msa0755250	0.810963	8.877057e-51	-8.615850e-47
Msa0755220	Msa0755250	0.975036	3.191563e-139	-8.615850e-47
Msa0755250	Msa0797070	0.901076	3.861174e-78	-8.615850e-47
Msa0755250	Msa1057320	0.804892	1.736316e-49	-8.615850e-47
Msa0755250	Msa1204260	0.828346	9.461063e-55	-8.615850e-47
Msa0755250	Msa1333160	0.821104	4.820541e-53	-8.615850e-47
Msa0755250	Msa1434780	0.983491	6.890073e-158	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0755250	MtrunA17_Chr5g0400141	99.184	245	1	1	1	245	1	244	2.96e-179	491
Msa0755250	MtrunA17_Chr4g0048231	27.083	192	129	4	21	208	8	192	1.13e-11	63.9
Msa0755250	MtrunA17_Chr7g0271811	26.291	213	144	5	21	226	73	279	3.53e-11	62.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0755250	AT2G38740.1	70.870	230	67	0	11	240	12	241	2.45e-123	350
Msa0755250	AT1G56500.2	27.103	214	141	5	21	226	74	280	2.23e-13	69.7
Msa0755250	AT1G56500.1	27.103	214	141	5	21	226	74	280	2.52e-13	69.7
Msa0755250	AT4G21470.1	27.941	204	132	6	10	208	2	195	6.54e-12	65.1

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Find 93 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCAGAGGATTTACTGA+TGG	0.582964	5_2:-9031562	Msa0755250:CDS
AAACCTCGTTCCCGATCACC+AGG	0.467601	5_2:+9032114	None:intergenic
AAAGCCTGCCTTTCTGATAA+AGG	0.327178	5_2:-9031535	Msa0755250:CDS
AAAGTAAAAGAATAAGTGGG+TGG	0.642601	5_2:-9033229	Msa0755250:five_prime_UTR
AACCCAGAGGATTTACTGAT+GGG	0.570236	5_2:-9031561	Msa0755250:CDS
AACCTCGTTCCCGATCACCA+GGG	0.706366	5_2:+9032115	None:intergenic
AAGATAAGGAAGCCATGTTT+CGG	0.470711	5_2:-9032080	Msa0755250:CDS
AAGGAAGCGTTACCTTTCGA+CGG	0.608896	5_2:+9033070	None:intergenic
AATACATGTGAGAGAGAGTG+AGG	0.586139	5_2:-9031230	Msa0755250:three_prime_UTR
AATGTGATAGTTGGCAATGA+AGG	0.502789	5_2:-9031271	Msa0755250:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTAAAAGAATAAGTGGG+TGG	-	chr5_2:9031215-9031234	Msa0755250:three_prime_UTR	30.0%
ATGTGAATTTGATTCTTTGG+CGG	-	chr5_2:9031251-9031270	Msa0755250:three_prime_UTR	30.0%
CCATCTTATAAAGAAACCAA+CGG	+	chr5_2:9031675-9031694	None:intergenic	30.0%
TATGAACTTCAAAGCAAGTA+AGG	-	chr5_2:9031774-9031793	Msa0755250:CDS	30.0%
ATAAAGTATGGATAGATTCG+AGG	+	chr5_2:9031804-9031823	None:intergenic	30.0%
CTATCCATACTTTATTCCAA+AGG	-	chr5_2:9031809-9031828	Msa0755250:CDS	30.0%
CTTAAAATCTTTGTGCTAAC+CGG	-	chr5_2:9031871-9031890	Msa0755250:CDS	30.0%
TGACACAACATGAAAGTAAT+GGG	+	chr5_2:9031961-9031980	None:intergenic	30.0%
TCTTGAAATTTAGCACAATG+GGG	+	chr5_2:9032424-9032443	None:intergenic	30.0%
GAAACATATTTCCTTGATGA+TGG	-	chr5_2:9032448-9032467	Msa0755250:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	9031162	9033304	9031162	ID=Msa0755250;Name=Msa0755250
chr5_2	mRNA	9031162	9033304	9031162	ID=Msa0755250-mRNA-1;Parent=Msa0755250;Name=Msa0755250-mRNA-1;_AED=0.05;_eAED=0.05;_QI=193\|0.75\|0.8\|1\|1\|1\|5\|311\|245
chr5_2	exon	9031162	9031649	9031162	ID=Msa0755250-mRNA-1:exon:4187;Parent=Msa0755250-mRNA-1
chr5_2	exon	9031725	9031986	9031725	ID=Msa0755250-mRNA-1:exon:4186;Parent=Msa0755250-mRNA-1
chr5_2	exon	9032078	9032229	9032078	ID=Msa0755250-mRNA-1:exon:4185;Parent=Msa0755250-mRNA-1
chr5_2	exon	9032367	9032484	9032367	ID=Msa0755250-mRNA-1:exon:4184;Parent=Msa0755250-mRNA-1
chr5_2	exon	9033083	9033304	9033083	ID=Msa0755250-mRNA-1:exon:4183;Parent=Msa0755250-mRNA-1
chr5_2	five_prime_UTR	9033112	9033304	9033112	ID=Msa0755250-mRNA-1:five_prime_utr;Parent=Msa0755250-mRNA-1
chr5_2	CDS	9033083	9033111	9033083	ID=Msa0755250-mRNA-1:cds;Parent=Msa0755250-mRNA-1
chr5_2	CDS	9032367	9032484	9032367	ID=Msa0755250-mRNA-1:cds;Parent=Msa0755250-mRNA-1
chr5_2	CDS	9032078	9032229	9032078	ID=Msa0755250-mRNA-1:cds;Parent=Msa0755250-mRNA-1
chr5_2	CDS	9031725	9031986	9031725	ID=Msa0755250-mRNA-1:cds;Parent=Msa0755250-mRNA-1
chr5_2	CDS	9031473	9031649	9031473	ID=Msa0755250-mRNA-1:cds;Parent=Msa0755250-mRNA-1
chr5_2	three_prime_UTR	9031162	9031472	9031162	ID=Msa0755250-mRNA-1:three_prime_utr;Parent=Msa0755250-mRNA-1

Gene Sequence

>Msa0755250

ATGGCTACTTCCGAGAATTCCGTCGAAAGCAGCAAGAGTTCTCTTACCAAACTTGCTCCAATTGAAGCAGTGCTGTTTGATATAGACGGAACTCTTTGTGATTCTGACCCAATCCACTATTATGCTTTTCGTGAAATGCTTCAAGAGATTGGTTTCAATGGAGGTAATCCTATAACAGAGGAATTTTTTATTGCGACCGTTGCTGGCAAGCACAATGATGACATTGCCTTGGATCTCTTCCCTGGTGATCGGGAACGAGGTTTAAAGTTTGTAGAAGATAAGGAAGCCATGTTTCGGAGATTAGCAGCTGAGCAACTGAAGCCGTTAAATGGCCTTGATAAAGTGAGGAAATGGATTGAAGATCGTGGATTGAAGCGAGCTGCAGTTACCAATGCTCCAAGACCAAATGCAGAACTCATTCTCTCAAAACTTGGTCTCTCAGATTTCTTTCATGCTGTTATTATTGGTGATGAATGTGAACATGCCAAGCCTCATCCAGAACCCTACTTGAAAGGTCTTGAAGCTCTCAAAGCATCTAAGGATCACACATTTATATTTGAGGATTCTGTTTCAGGAATCAAAGCAGGAGTCGCTGCTGGGATGCCTGTTATTGGTATATCTACCCGAAACCCAGAGGATTTACTGATGGGAGCAAAGCCTGCCTTTCTGATAAAGGATTATGATGATCCAAAATTGTGGGCAGCATTGGAAGAACTTGACAAGTCCGGTTCTCATTAA

Protein sequence

>Msa0755250

MATSENSVESSKSSLTKLAPIEAVLFDIDGTLCDSDPIHYYAFREMLQEIGFNGGNPITEEFFIATVAGKHNDDIALDLFPGDRERGLKFVEDKEAMFRRLAAEQLKPLNGLDKVRKWIEDRGLKRAAVTNAPRPNAELILSKLGLSDFFHAVIIGDECEHAKPHPEPYLKGLEALKASKDHTFIFEDSVSGIKAGVAAGMPVIGISTRNPEDLLMGAKPAFLIKDYDDPKLWAALEELDKSGSH*