AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0755220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0755220 MtrunA17_Chr5g0400141 99.184 245 1 1 1 245 1 244 2.96e-179 491
Msa0755220 MtrunA17_Chr4g0048231 27.083 192 129 4 21 208 8 192 1.13e-11 63.9
Msa0755220 MtrunA17_Chr7g0271811 26.291 213 144 5 21 226 73 279 3.53e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0755220 AT2G38740.1 70.870 230 67 0 11 240 12 241 2.45e-123 350
Msa0755220 AT1G56500.2 27.103 214 141 5 21 226 74 280 2.23e-13 69.7
Msa0755220 AT1G56500.1 27.103 214 141 5 21 226 74 280 2.52e-13 69.7
Msa0755220 AT4G21470.1 27.941 204 132 6 10 208 2 195 6.54e-12 65.1

Find 93 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATGCTGCCCACAATTT+TGG 0.109444 5_2:-9010391 None:intergenic
TTCTTTCATGCTGTTATTAT+TGG 0.134310 5_2:+9010073 Msa0755220:CDS
TTTCAAAGCAACACTGATTA+TGG 0.178476 5_2:-9010563 None:intergenic
TCGTTGCAGGATTCTGTTTC+AGG 0.193983 5_2:+9010256 Msa0755220:intron
CAGTAAATCCTCTGGGTTTC+GGG 0.200098 5_2:-9010326 None:intergenic
AGACCTTTCAAGTAGGGTTC+TGG 0.300746 5_2:-9010124 None:intergenic
TGCTTCAATTGGAGCAAGTT+TGG 0.305673 5_2:-9009447 None:intergenic
GAGCAACTGAAGCCGTTAAA+TGG 0.315774 5_2:+9009938 Msa0755220:CDS
GGCATGTGAATTTGATTCTT+TGG 0.325832 5_2:+9008696 Msa0755220:five_prime_UTR
AAAGCCTGCCTTTCTGATAA+AGG 0.327178 5_2:+9010357 Msa0755220:CDS
GTGCGACCGGCATAATTTCT+TGG 0.335993 5_2:+9010457 Msa0755220:three_prime_UTR
TCAGTAAATCCTCTGGGTTT+CGG 0.346064 5_2:-9010327 None:intergenic
GCTGCTGGGATGCCTGTTAT+TGG 0.354239 5_2:+9010295 Msa0755220:CDS
TGAGAGAGAGTGAGGGAGGA+AGG 0.365956 5_2:+9010670 Msa0755220:three_prime_UTR
TTTAAAGTTTGTAGAAGATA+AGG 0.369133 5_2:+9009798 Msa0755220:CDS
CTATAAAGTATAAAGAATAA+TGG 0.379494 5_2:-9010716 None:intergenic
TCCAAAATTGTGGGCAGCAT+TGG 0.379963 5_2:+9010390 Msa0755220:CDS
GCTCCCATCAGTAAATCCTC+TGG 0.391301 5_2:-9010334 None:intergenic
ATGAGTTCTGCATTTGGTCT+TGG 0.393932 5_2:-9010025 None:intergenic
ACAAAATTATACAGGTAATC+TGG 0.395086 5_2:-9010513 None:intergenic
TGCATTTGGTCTTGGAGCAT+TGG 0.395388 5_2:-9010017 None:intergenic
TGAAGCTCTCAAAGCATCTA+AGG 0.401317 5_2:+9010147 Msa0755220:CDS
CGGGTAGATATACCAATAAC+AGG 0.404855 5_2:-9010307 None:intergenic
AGAGAGTGAGGGAGGAAGGG+AGG 0.410107 5_2:+9010674 Msa0755220:three_prime_UTR
GAGAGAATGAGTTCTGCATT+TGG 0.417411 5_2:-9010031 None:intergenic
TTTCACGAAAAGCATAATAG+TGG 0.419783 5_2:-9009514 None:intergenic
TCAAACAGCACTGCTTCAAT+TGG 0.423109 5_2:-9009458 None:intergenic
GCCTTGATAAAGTGAGGAAA+TGG 0.427010 5_2:+9009960 Msa0755220:CDS
ATCAAAGCAGGAGTCGCTGC+TGG 0.427325 5_2:+9010280 Msa0755220:CDS
ACTTTATCAAGGCCATTTAA+CGG 0.428311 5_2:-9009950 None:intergenic
CGAAAAGCATAATAGTGGAT+TGG 0.428774 5_2:-9009509 None:intergenic
GAAAAGCATAATAGTGGATT+GGG 0.432417 5_2:-9009508 None:intergenic
GGATCACACATTTATATTTG+AGG 0.435509 5_2:+9010168 Msa0755220:CDS
GGTTGTCAGATTGGTTTCAA+TGG 0.438195 5_2:+9009676 Msa0755220:intron
TTCAAGTAGGGTTCTGGATG+AGG 0.438758 5_2:-9010118 None:intergenic
CCACACACGAAGCTAAACTA+TGG 0.440508 5_2:+9008788 Msa0755220:exon
ATTGCCTTGGATCTCTTCCC+TGG 0.441811 5_2:+9009760 Msa0755220:CDS
GGATCTCTTCCCTGGTGATC+GGG 0.441858 5_2:+9009768 Msa0755220:CDS
TCCATTTCCTCACTTTATCA+AGG 0.442894 5_2:-9009961 None:intergenic
TGGATCTCTTCCCTGGTGAT+CGG 0.444007 5_2:+9009767 Msa0755220:CDS
TTACCTTTCGACGGAATTCT+CGG 0.446019 5_2:-9008817 None:intergenic
GAGAGTGAGGGAGGAAGGGA+GGG 0.447743 5_2:+9010675 Msa0755220:three_prime_UTR
CTCCCATCAGTAAATCCTCT+GGG 0.451240 5_2:-9010333 None:intergenic
AAACCTCGTTCCCGATCACC+AGG 0.467601 5_2:-9009778 None:intergenic
AAGATAAGGAAGCCATGTTT+CGG 0.470711 5_2:+9009812 Msa0755220:CDS
TATTAAAGTAAAAGAATAAG+TGG 0.477288 5_2:+9008659 Msa0755220:five_prime_UTR
TCACATGTATTGCAATTCCT+TGG 0.482605 5_2:-9010650 None:intergenic
GAGAGAGAGTGAGGGAGGAA+GGG 0.491806 5_2:+9010671 Msa0755220:three_prime_UTR
TTATACTTTACCACGACGAA+TGG 0.497432 5_2:-9008725 None:intergenic
CCCCTGCAACAAAATTATAC+AGG 0.500332 5_2:-9010521 None:intergenic
ATGTGAATTTGATTCTTTGG+CGG 0.501927 5_2:+9008699 Msa0755220:five_prime_UTR
AATGTGATAGTTGGCAATGA+AGG 0.502789 5_2:+9010621 Msa0755220:three_prime_UTR
TAATCCTTTATCAGAAAGGC+AGG 0.505843 5_2:-9010361 None:intergenic
ATCATAATCCTTTATCAGAA+AGG 0.507299 5_2:-9010365 None:intergenic
ATCATTGTGCTTGCCAGCAA+CGG 0.511684 5_2:-9009734 None:intergenic
GCTTCAAGACCTTTCAAGTA+GGG 0.512510 5_2:-9010130 None:intergenic
GAACTCATTCTCTCAAAACT+TGG 0.514892 5_2:+9010040 Msa0755220:CDS
ATGAATGAATGAGAGAGGTT+AGG 0.516706 5_2:-9008754 None:intergenic
TTGGAAGAACTTGACAAGTC+CGG 0.524640 5_2:+9010409 Msa0755220:CDS
GCACAATGATGACATTGCCT+TGG 0.533662 5_2:+9009747 Msa0755220:CDS
CATGTGAGAGAGAGTGAGGG+AGG 0.534460 5_2:+9010666 Msa0755220:three_prime_UTR
ATTATGATGATCCAAAATTG+TGG 0.545112 5_2:+9010380 Msa0755220:CDS
GTAGGGTTCTGGATGAGGCT+TGG 0.551862 5_2:-9010113 None:intergenic
CATCCAGAACCCTACTTGAA+AGG 0.553649 5_2:+9010121 Msa0755220:CDS
TCTGTTTCAGGAATCAAAGC+AGG 0.557269 5_2:+9010268 Msa0755220:CDS
TAAGTGGGTGGCGGCATATG+CGG 0.559269 5_2:+9008675 Msa0755220:five_prime_UTR
TGTCAGATTGGTTTCAATGG+AGG 0.559859 5_2:+9009679 Msa0755220:intron
AACCCAGAGGATTTACTGAT+GGG 0.570236 5_2:+9010331 Msa0755220:CDS
TTCCCTGGTGATCGGGAACG+AGG 0.572268 5_2:+9009775 Msa0755220:CDS
TCAAAGCAGGAGTCGCTGCT+GGG 0.574198 5_2:+9010281 Msa0755220:CDS
AAACCCAGAGGATTTACTGA+TGG 0.582964 5_2:+9010330 Msa0755220:CDS
AATACATGTGAGAGAGAGTG+AGG 0.586139 5_2:+9010662 Msa0755220:three_prime_UTR
AGCTTCAAGACCTTTCAAGT+AGG 0.587847 5_2:-9010131 None:intergenic
GGCAATGAAGGTCAATGCCA+AGG 0.588147 5_2:+9010633 Msa0755220:three_prime_UTR
AGGAAATGGATTGAAGATCG+TGG 0.589739 5_2:+9009974 Msa0755220:CDS
ATTAAAGTAAAAGAATAAGT+GGG 0.592323 5_2:+9008660 Msa0755220:five_prime_UTR
TAGGGTTTACCTCCGAAACA+TGG 0.604667 5_2:-9009824 None:intergenic
AAGGAAGCGTTACCTTTCGA+CGG 0.608896 5_2:-9008826 None:intergenic
GTAAAAGAATAAGTGGGTGG+CGG 0.612033 5_2:+9008666 Msa0755220:five_prime_UTR
TGGAGGTAATCCTATAACAG+AGG 0.615734 5_2:+9009696 Msa0755220:CDS
CCATAGTTTAGCTTCGTGTG+TGG 0.616267 5_2:-9008788 None:intergenic
TTATGATGATCCAAAATTGT+GGG 0.617657 5_2:+9010381 Msa0755220:CDS
AATGAATGAATGAATGAGAG+AGG 0.624716 5_2:-9008759 None:intergenic
TAAATGGCCTTGATAAAGTG+AGG 0.625840 5_2:+9009954 Msa0755220:CDS
CTTCCGAGAATTCCGTCGAA+AGG 0.626588 5_2:+9008814 Msa0755220:CDS
TTGGCGGATTCCATTCGTCG+TGG 0.639712 5_2:+9008715 Msa0755220:five_prime_UTR
AAAGTAAAAGAATAAGTGGG+TGG 0.642601 5_2:+9008663 Msa0755220:five_prime_UTR
ATAAGGAAGCCATGTTTCGG+AGG 0.643823 5_2:+9009815 Msa0755220:CDS
ATACATGTGAGAGAGAGTGA+GGG 0.649507 5_2:+9010663 Msa0755220:three_prime_UTR
ATCACCAGGGAAGAGATCCA+AGG 0.667902 5_2:-9009764 None:intergenic
GCAGTGCTGTTTGATATAGA+CGG 0.671189 5_2:+9009467 Msa0755220:CDS
AACCTCGTTCCCGATCACCA+GGG 0.706366 5_2:-9009777 None:intergenic
TATATCTACCCGAAACCCAG+AGG 0.748163 5_2:+9010318 Msa0755220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATACTATAATATCTATT+TGG - chr5_2:9009569-9009588 None:intergenic 10.0%
!! TAAATACTATAATATCTATT+TGG - chr5_2:9009569-9009588 None:intergenic 10.0%
!! TATTAAAGTAAAAGAATAAG+TGG + chr5_2:9008659-9008678 Msa0755220:five_prime_UTR 15.0%
!! ATTAAAGTAAAAGAATAAGT+GGG + chr5_2:9008660-9008679 Msa0755220:five_prime_UTR 15.0%
!! ATCTTATTATCATGAAAAAT+AGG - chr5_2:9008937-9008956 None:intergenic 15.0%
!!! TTAACACTAAATATATTTTG+AGG - chr5_2:9009060-9009079 None:intergenic 15.0%
!!! TCATATTTTGTATAAAAGAA+TGG - chr5_2:9009207-9009226 None:intergenic 15.0%
!! TATTAGAAATTAACAAATGT+TGG + chr5_2:9009652-9009671 Msa0755220:intron 15.0%
!! CTATAAAGTATAAAGAATAA+TGG - chr5_2:9010719-9010738 None:intergenic 15.0%
!! TATTAAAGTAAAAGAATAAG+TGG + chr5_2:9008659-9008678 Msa0755220:five_prime_UTR 15.0%
!! ATTAAAGTAAAAGAATAAGT+GGG + chr5_2:9008660-9008679 Msa0755220:five_prime_UTR 15.0%
!! ATCTTATTATCATGAAAAAT+AGG - chr5_2:9008937-9008956 None:intergenic 15.0%
!!! TTAACACTAAATATATTTTG+AGG - chr5_2:9009060-9009079 None:intergenic 15.0%
!!! TCATATTTTGTATAAAAGAA+TGG - chr5_2:9009207-9009226 None:intergenic 15.0%
!! TATTAGAAATTAACAAATGT+TGG + chr5_2:9009652-9009671 Msa0755220:intron 15.0%
!! CTATAAAGTATAAAGAATAA+TGG - chr5_2:9010719-9010738 None:intergenic 15.0%
!!! TATTTTTCATAATTTGTCTG+CGG - chr5_2:9008633-9008652 None:intergenic 20.0%
!! AAATGAAATCAAGAATATGA+AGG - chr5_2:9008848-9008867 None:intergenic 20.0%
!!! CACAAAGATTTTAAGTTTAT+CGG - chr5_2:9009314-9009333 None:intergenic 20.0%
!! ATAAAAAATTCCTCTGTTAT+AGG - chr5_2:9009709-9009728 None:intergenic 20.0%
!!! TTTAAAGTTTGTAGAAGATA+AGG + chr5_2:9009798-9009817 Msa0755220:CDS 20.0%
!! GAATAAGAACAAATTATCTA+AGG - chr5_2:9010214-9010233 None:intergenic 20.0%
!!! TTCAAAATTTTAATGAGAAC+CGG - chr5_2:9010431-9010450 None:intergenic 20.0%
!!! TTTTGTAATAATGTGATAGT+TGG + chr5_2:9010612-9010631 Msa0755220:three_prime_UTR 20.0%
!!! TATTTTTCATAATTTGTCTG+CGG - chr5_2:9008633-9008652 None:intergenic 20.0%
!! AAATGAAATCAAGAATATGA+AGG - chr5_2:9008848-9008867 None:intergenic 20.0%
!!! CACAAAGATTTTAAGTTTAT+CGG - chr5_2:9009314-9009333 None:intergenic 20.0%
!! ATAAAAAATTCCTCTGTTAT+AGG - chr5_2:9009709-9009728 None:intergenic 20.0%
!!! TTTAAAGTTTGTAGAAGATA+AGG + chr5_2:9009798-9009817 Msa0755220:CDS 20.0%
!! GAATAAGAACAAATTATCTA+AGG - chr5_2:9010214-9010233 None:intergenic 20.0%
!!! TTCAAAATTTTAATGAGAAC+CGG - chr5_2:9010431-9010450 None:intergenic 20.0%
!!! TTTTGTAATAATGTGATAGT+TGG + chr5_2:9010612-9010631 Msa0755220:three_prime_UTR 20.0%
! ATCTATAGCAACTTAATTGA+TGG - chr5_2:9009098-9009117 None:intergenic 25.0%
! ATAAAAGAATGGAGATAACA+AGG - chr5_2:9009196-9009215 None:intergenic 25.0%
! TATCCTTACTTTATTCCAAA+GGG + chr5_2:9009258-9009277 Msa0755220:intron 25.0%
! TATAAATTGGCATATGACTA+AGG + chr5_2:9009615-9009634 Msa0755220:intron 25.0%
! TAGAAATTAACAAATGTTGG+TGG + chr5_2:9009655-9009674 Msa0755220:intron 25.0%
! ATCTTGAAATTTAGCACAAT+GGG - chr5_2:9009873-9009892 None:intergenic 25.0%
! AATCTTGAAATTTAGCACAA+TGG - chr5_2:9009874-9009893 None:intergenic 25.0%
! TTCTTTCATGCTGTTATTAT+TGG + chr5_2:9010073-9010092 Msa0755220:CDS 25.0%
! ATCATAATCCTTTATCAGAA+AGG - chr5_2:9010368-9010387 None:intergenic 25.0%
! ATTATGATGATCCAAAATTG+TGG + chr5_2:9010380-9010399 Msa0755220:CDS 25.0%
! TTATGATGATCCAAAATTGT+GGG + chr5_2:9010381-9010400 Msa0755220:CDS 25.0%
!! TTTTTACCAAGAAATTATGC+CGG - chr5_2:9010466-9010485 None:intergenic 25.0%
! ACAAAATTATACAGGTAATC+TGG - chr5_2:9010516-9010535 None:intergenic 25.0%
! ATCTATAGCAACTTAATTGA+TGG - chr5_2:9009098-9009117 None:intergenic 25.0%
! ATAAAAGAATGGAGATAACA+AGG - chr5_2:9009196-9009215 None:intergenic 25.0%
! TATCCTTACTTTATTCCAAA+GGG + chr5_2:9009258-9009277 Msa0755220:intron 25.0%
! TATAAATTGGCATATGACTA+AGG + chr5_2:9009615-9009634 Msa0755220:intron 25.0%
! TAGAAATTAACAAATGTTGG+TGG + chr5_2:9009655-9009674 Msa0755220:intron 25.0%
! ATCTTGAAATTTAGCACAAT+GGG - chr5_2:9009873-9009892 None:intergenic 25.0%
! AATCTTGAAATTTAGCACAA+TGG - chr5_2:9009874-9009893 None:intergenic 25.0%
! TTCTTTCATGCTGTTATTAT+TGG + chr5_2:9010073-9010092 Msa0755220:CDS 25.0%
! ATCATAATCCTTTATCAGAA+AGG - chr5_2:9010368-9010387 None:intergenic 25.0%
! ATTATGATGATCCAAAATTG+TGG + chr5_2:9010380-9010399 Msa0755220:CDS 25.0%
! TTATGATGATCCAAAATTGT+GGG + chr5_2:9010381-9010400 Msa0755220:CDS 25.0%
!! TTTTTACCAAGAAATTATGC+CGG - chr5_2:9010466-9010485 None:intergenic 25.0%
! ACAAAATTATACAGGTAATC+TGG - chr5_2:9010516-9010535 None:intergenic 25.0%
AAAGTAAAAGAATAAGTGGG+TGG + chr5_2:9008663-9008682 Msa0755220:five_prime_UTR 30.0%
ATGTGAATTTGATTCTTTGG+CGG + chr5_2:9008699-9008718 Msa0755220:five_prime_UTR 30.0%
AATGAATGAATGAATGAGAG+AGG - chr5_2:9008762-9008781 None:intergenic 30.0%
CCATCTTATAAAGAAACCAA+CGG - chr5_2:9009127-9009146 None:intergenic 30.0%
TATGAACTTCAAAGCAAGTA+AGG + chr5_2:9009222-9009241 Msa0755220:intron 30.0%
ATAAAGTAAGGATAGATTCG+AGG - chr5_2:9009252-9009271 None:intergenic 30.0%
CTATCCTTACTTTATTCCAA+AGG + chr5_2:9009257-9009276 Msa0755220:intron 30.0%
CTTAAAATCTTTGTGCTAAC+CGG + chr5_2:9009319-9009338 Msa0755220:intron 30.0%
TGACACAACATGAAAGTAAT+GGG - chr5_2:9009409-9009428 None:intergenic 30.0%
!! GAAAAGCATAATAGTGGATT+GGG - chr5_2:9009511-9009530 None:intergenic 30.0%
! TTTCACGAAAAGCATAATAG+TGG - chr5_2:9009517-9009536 None:intergenic 30.0%
TCTTGAAATTTAGCACAATG+GGG - chr5_2:9009872-9009891 None:intergenic 30.0%
GAAACATATTTCCTTGATGA+TGG + chr5_2:9009896-9009915 Msa0755220:intron 30.0%
ACTTTATCAAGGCCATTTAA+CGG - chr5_2:9009953-9009972 None:intergenic 30.0%
GGATCACACATTTATATTTG+AGG + chr5_2:9010168-9010187 Msa0755220:CDS 30.0%
! TACCTGTATAATTTTGTTGC+AGG + chr5_2:9010519-9010538 Msa0755220:three_prime_UTR 30.0%
! ACCTGTATAATTTTGTTGCA+GGG + chr5_2:9010520-9010539 Msa0755220:three_prime_UTR 30.0%
! TTTCAAAGCAACACTGATTA+TGG - chr5_2:9010566-9010585 None:intergenic 30.0%
AAAGTAAAAGAATAAGTGGG+TGG + chr5_2:9008663-9008682 Msa0755220:five_prime_UTR 30.0%
ATGTGAATTTGATTCTTTGG+CGG + chr5_2:9008699-9008718 Msa0755220:five_prime_UTR 30.0%
AATGAATGAATGAATGAGAG+AGG - chr5_2:9008762-9008781 None:intergenic 30.0%
CCATCTTATAAAGAAACCAA+CGG - chr5_2:9009127-9009146 None:intergenic 30.0%
TATGAACTTCAAAGCAAGTA+AGG + chr5_2:9009222-9009241 Msa0755220:intron 30.0%
ATAAAGTAAGGATAGATTCG+AGG - chr5_2:9009252-9009271 None:intergenic 30.0%
CTATCCTTACTTTATTCCAA+AGG + chr5_2:9009257-9009276 Msa0755220:intron 30.0%
CTTAAAATCTTTGTGCTAAC+CGG + chr5_2:9009319-9009338 Msa0755220:intron 30.0%
TGACACAACATGAAAGTAAT+GGG - chr5_2:9009409-9009428 None:intergenic 30.0%
!! GAAAAGCATAATAGTGGATT+GGG - chr5_2:9009511-9009530 None:intergenic 30.0%
! TTTCACGAAAAGCATAATAG+TGG - chr5_2:9009517-9009536 None:intergenic 30.0%
TCTTGAAATTTAGCACAATG+GGG - chr5_2:9009872-9009891 None:intergenic 30.0%
GAAACATATTTCCTTGATGA+TGG + chr5_2:9009896-9009915 Msa0755220:intron 30.0%
ACTTTATCAAGGCCATTTAA+CGG - chr5_2:9009953-9009972 None:intergenic 30.0%
GGATCACACATTTATATTTG+AGG + chr5_2:9010168-9010187 Msa0755220:CDS 30.0%
! TACCTGTATAATTTTGTTGC+AGG + chr5_2:9010519-9010538 Msa0755220:three_prime_UTR 30.0%
! ACCTGTATAATTTTGTTGCA+GGG + chr5_2:9010520-9010539 Msa0755220:three_prime_UTR 30.0%
! TTTCAAAGCAACACTGATTA+TGG - chr5_2:9010566-9010585 None:intergenic 30.0%
!! TTTTCATAATTTGTCTGCGG+AGG - chr5_2:9008630-9008649 None:intergenic 35.0%
GGCATGTGAATTTGATTCTT+TGG + chr5_2:9008696-9008715 Msa0755220:five_prime_UTR 35.0%
TTATACTTTACCACGACGAA+TGG - chr5_2:9008728-9008747 None:intergenic 35.0%
ATGAATGAATGAGAGAGGTT+AGG - chr5_2:9008757-9008776 None:intergenic 35.0%
!! TTTTGATCTTTAAGAGTGCG+AGG - chr5_2:9008976-9008995 None:intergenic 35.0%
ATTGAAGATGCACCCAATTT+AGG + chr5_2:9008995-9009014 Msa0755220:intron 35.0%
TTGAAGATGCACCCAATTTA+GGG + chr5_2:9008996-9009015 Msa0755220:intron 35.0%
! TTAGCAGAAGAAAGTGTGAA+TGG - chr5_2:9009034-9009053 None:intergenic 35.0%
TGCTATAGATATATTGCCGT+TGG + chr5_2:9009108-9009127 Msa0755220:intron 35.0%
!! CCGTTGGTTTCTTTATAAGA+TGG + chr5_2:9009124-9009143 Msa0755220:intron 35.0%
TCTTTATAAGATGGCATTCG+AGG + chr5_2:9009133-9009152 Msa0755220:intron 35.0%
TCTAGACTATATGGCCATAA+AGG - chr5_2:9009166-9009185 None:intergenic 35.0%
AACTTCAAAGCAAGTAAGGT+AGG + chr5_2:9009226-9009245 Msa0755220:intron 35.0%
!! GTTCCCTTTGGAATAAAGTA+AGG - chr5_2:9009264-9009283 None:intergenic 35.0%
GATTTCAAGAAAGTTCCCTT+TGG - chr5_2:9009276-9009295 None:intergenic 35.0%
AATCAACTCATGTCATGAAC+CGG - chr5_2:9009341-9009360 None:intergenic 35.0%
CTGACACAACATGAAAGTAA+TGG - chr5_2:9009410-9009429 None:intergenic 35.0%
!! CGAAAAGCATAATAGTGGAT+TGG - chr5_2:9009512-9009531 None:intergenic 35.0%
! TTTTCGTGAAATGCTTCAAG+AGG + chr5_2:9009526-9009545 Msa0755220:CDS 35.0%
AAGATAAGGAAGCCATGTTT+CGG + chr5_2:9009812-9009831 Msa0755220:CDS 35.0%
ATCTAGATAGTCCATCATCA+AGG - chr5_2:9009910-9009929 None:intergenic 35.0%
! TAAATGGCCTTGATAAAGTG+AGG + chr5_2:9009954-9009973 Msa0755220:CDS 35.0%
TCCATTTCCTCACTTTATCA+AGG - chr5_2:9009964-9009983 None:intergenic 35.0%
GAACTCATTCTCTCAAAACT+TGG + chr5_2:9010040-9010059 Msa0755220:CDS 35.0%
TGTTCTTATTCTGCTTCTGA+CGG + chr5_2:9010223-9010242 Msa0755220:intron 35.0%
TAATCCTTTATCAGAAAGGC+AGG - chr5_2:9010364-9010383 None:intergenic 35.0%
! TTTTGAATTACTAGTGCGAC+CGG + chr5_2:9010444-9010463 Msa0755220:three_prime_UTR 35.0%
! CCTGTATAATTTTGTTGCAG+GGG + chr5_2:9010521-9010540 Msa0755220:three_prime_UTR 35.0%
! CTGTATAATTTTGTTGCAGG+GGG + chr5_2:9010522-9010541 Msa0755220:three_prime_UTR 35.0%
AATGTGATAGTTGGCAATGA+AGG + chr5_2:9010621-9010640 Msa0755220:three_prime_UTR 35.0%
TCACATGTATTGCAATTCCT+TGG - chr5_2:9010653-9010672 None:intergenic 35.0%
GGAGGACAAAATTATAGACT+AGG - chr5_2:9008612-9008631 None:intergenic 35.0%
!! TTTTCATAATTTGTCTGCGG+AGG - chr5_2:9008630-9008649 None:intergenic 35.0%
GGCATGTGAATTTGATTCTT+TGG + chr5_2:9008696-9008715 Msa0755220:five_prime_UTR 35.0%
TTATACTTTACCACGACGAA+TGG - chr5_2:9008728-9008747 None:intergenic 35.0%
ATGAATGAATGAGAGAGGTT+AGG - chr5_2:9008757-9008776 None:intergenic 35.0%
!! TTTTGATCTTTAAGAGTGCG+AGG - chr5_2:9008976-9008995 None:intergenic 35.0%
ATTGAAGATGCACCCAATTT+AGG + chr5_2:9008995-9009014 Msa0755220:intron 35.0%
TTGAAGATGCACCCAATTTA+GGG + chr5_2:9008996-9009015 Msa0755220:intron 35.0%
! TTAGCAGAAGAAAGTGTGAA+TGG - chr5_2:9009034-9009053 None:intergenic 35.0%
TGCTATAGATATATTGCCGT+TGG + chr5_2:9009108-9009127 Msa0755220:intron 35.0%
!! CCGTTGGTTTCTTTATAAGA+TGG + chr5_2:9009124-9009143 Msa0755220:intron 35.0%
TCTTTATAAGATGGCATTCG+AGG + chr5_2:9009133-9009152 Msa0755220:intron 35.0%
TCTAGACTATATGGCCATAA+AGG - chr5_2:9009166-9009185 None:intergenic 35.0%
AACTTCAAAGCAAGTAAGGT+AGG + chr5_2:9009226-9009245 Msa0755220:intron 35.0%
!! GTTCCCTTTGGAATAAAGTA+AGG - chr5_2:9009264-9009283 None:intergenic 35.0%
GATTTCAAGAAAGTTCCCTT+TGG - chr5_2:9009276-9009295 None:intergenic 35.0%
AATCAACTCATGTCATGAAC+CGG - chr5_2:9009341-9009360 None:intergenic 35.0%
CTGACACAACATGAAAGTAA+TGG - chr5_2:9009410-9009429 None:intergenic 35.0%
!! CGAAAAGCATAATAGTGGAT+TGG - chr5_2:9009512-9009531 None:intergenic 35.0%
! TTTTCGTGAAATGCTTCAAG+AGG + chr5_2:9009526-9009545 Msa0755220:CDS 35.0%
AAGATAAGGAAGCCATGTTT+CGG + chr5_2:9009812-9009831 Msa0755220:CDS 35.0%
ATCTAGATAGTCCATCATCA+AGG - chr5_2:9009910-9009929 None:intergenic 35.0%
! TAAATGGCCTTGATAAAGTG+AGG + chr5_2:9009954-9009973 Msa0755220:CDS 35.0%
TCCATTTCCTCACTTTATCA+AGG - chr5_2:9009964-9009983 None:intergenic 35.0%
GAACTCATTCTCTCAAAACT+TGG + chr5_2:9010040-9010059 Msa0755220:CDS 35.0%
TGTTCTTATTCTGCTTCTGA+CGG + chr5_2:9010223-9010242 Msa0755220:intron 35.0%
TAATCCTTTATCAGAAAGGC+AGG - chr5_2:9010364-9010383 None:intergenic 35.0%
! TTTTGAATTACTAGTGCGAC+CGG + chr5_2:9010444-9010463 Msa0755220:three_prime_UTR 35.0%
! CCTGTATAATTTTGTTGCAG+GGG + chr5_2:9010521-9010540 Msa0755220:three_prime_UTR 35.0%
! CTGTATAATTTTGTTGCAGG+GGG + chr5_2:9010522-9010541 Msa0755220:three_prime_UTR 35.0%
AATGTGATAGTTGGCAATGA+AGG + chr5_2:9010621-9010640 Msa0755220:three_prime_UTR 35.0%
TCACATGTATTGCAATTCCT+TGG - chr5_2:9010653-9010672 None:intergenic 35.0%
GTAAAAGAATAAGTGGGTGG+CGG + chr5_2:9008666-9008685 Msa0755220:five_prime_UTR 40.0%
TTACCTTTCGACGGAATTCT+CGG - chr5_2:9008820-9008839 None:intergenic 40.0%
TCACTGCAGATCCCTAAATT+GGG - chr5_2:9009010-9009029 None:intergenic 40.0%
TTCACTGCAGATCCCTAAAT+TGG - chr5_2:9009011-9009030 None:intergenic 40.0%
TTCGAGGCATAGAACCTTTA+TGG + chr5_2:9009149-9009168 Msa0755220:intron 40.0%
GGACAGAACTCTAGACTATA+TGG - chr5_2:9009175-9009194 None:intergenic 40.0%
TGCTTCAATTGGAGCAAGTT+TGG - chr5_2:9009450-9009469 None:intergenic 40.0%
TCAAACAGCACTGCTTCAAT+TGG - chr5_2:9009461-9009480 None:intergenic 40.0%
!! GCAGTGCTGTTTGATATAGA+CGG + chr5_2:9009467-9009486 Msa0755220:CDS 40.0%
!! AATGTTGGTGGTTGTCAGAT+TGG + chr5_2:9009667-9009686 Msa0755220:intron 40.0%
!! GGTTGTCAGATTGGTTTCAA+TGG + chr5_2:9009676-9009695 Msa0755220:intron 40.0%
!! TGTCAGATTGGTTTCAATGG+AGG + chr5_2:9009679-9009698 Msa0755220:intron 40.0%
TGGAGGTAATCCTATAACAG+AGG + chr5_2:9009696-9009715 Msa0755220:CDS 40.0%
!!! TTTTTTATTGCGACCGTTGC+TGG + chr5_2:9009721-9009740 Msa0755220:CDS 40.0%
AGCACAATGGGGATATAGTT+CGG - chr5_2:9009861-9009880 None:intergenic 40.0%
GCCTTGATAAAGTGAGGAAA+TGG + chr5_2:9009960-9009979 Msa0755220:CDS 40.0%
!! AGGAAATGGATTGAAGATCG+TGG + chr5_2:9009974-9009993 Msa0755220:CDS 40.0%
ATGAGTTCTGCATTTGGTCT+TGG - chr5_2:9010028-9010047 None:intergenic 40.0%
GAGAGAATGAGTTCTGCATT+TGG - chr5_2:9010034-9010053 None:intergenic 40.0%
! GCTTCAAGACCTTTCAAGTA+GGG - chr5_2:9010133-9010152 None:intergenic 40.0%
! AGCTTCAAGACCTTTCAAGT+AGG - chr5_2:9010134-9010153 None:intergenic 40.0%
! TGAAGCTCTCAAAGCATCTA+AGG + chr5_2:9010147-9010166 Msa0755220:CDS 40.0%
TCTGTTTCAGGAATCAAAGC+AGG + chr5_2:9010268-9010287 Msa0755220:CDS 40.0%
CGGGTAGATATACCAATAAC+AGG - chr5_2:9010310-9010329 None:intergenic 40.0%
TCAGTAAATCCTCTGGGTTT+CGG - chr5_2:9010330-9010349 None:intergenic 40.0%
AAACCCAGAGGATTTACTGA+TGG + chr5_2:9010330-9010349 Msa0755220:CDS 40.0%
AACCCAGAGGATTTACTGAT+GGG + chr5_2:9010331-9010350 Msa0755220:CDS 40.0%
AAAGCCTGCCTTTCTGATAA+AGG + chr5_2:9010357-9010376 Msa0755220:CDS 40.0%
TTGGAAGAACTTGACAAGTC+CGG + chr5_2:9010409-9010428 Msa0755220:CDS 40.0%
CCCCTGCAACAAAATTATAC+AGG - chr5_2:9010524-9010543 None:intergenic 40.0%
AATACATGTGAGAGAGAGTG+AGG + chr5_2:9010662-9010681 Msa0755220:three_prime_UTR 40.0%
ATACATGTGAGAGAGAGTGA+GGG + chr5_2:9010663-9010682 Msa0755220:three_prime_UTR 40.0%
GTAAAAGAATAAGTGGGTGG+CGG + chr5_2:9008666-9008685 Msa0755220:five_prime_UTR 40.0%
TTACCTTTCGACGGAATTCT+CGG - chr5_2:9008820-9008839 None:intergenic 40.0%
TCACTGCAGATCCCTAAATT+GGG - chr5_2:9009010-9009029 None:intergenic 40.0%
TTCACTGCAGATCCCTAAAT+TGG - chr5_2:9009011-9009030 None:intergenic 40.0%
TTCGAGGCATAGAACCTTTA+TGG + chr5_2:9009149-9009168 Msa0755220:intron 40.0%
GGACAGAACTCTAGACTATA+TGG - chr5_2:9009175-9009194 None:intergenic 40.0%
TGCTTCAATTGGAGCAAGTT+TGG - chr5_2:9009450-9009469 None:intergenic 40.0%
TCAAACAGCACTGCTTCAAT+TGG - chr5_2:9009461-9009480 None:intergenic 40.0%
!! GCAGTGCTGTTTGATATAGA+CGG + chr5_2:9009467-9009486 Msa0755220:CDS 40.0%
!! AATGTTGGTGGTTGTCAGAT+TGG + chr5_2:9009667-9009686 Msa0755220:intron 40.0%
!! GGTTGTCAGATTGGTTTCAA+TGG + chr5_2:9009676-9009695 Msa0755220:intron 40.0%
!! TGTCAGATTGGTTTCAATGG+AGG + chr5_2:9009679-9009698 Msa0755220:intron 40.0%
TGGAGGTAATCCTATAACAG+AGG + chr5_2:9009696-9009715 Msa0755220:CDS 40.0%
!!! TTTTTTATTGCGACCGTTGC+TGG + chr5_2:9009721-9009740 Msa0755220:CDS 40.0%
AGCACAATGGGGATATAGTT+CGG - chr5_2:9009861-9009880 None:intergenic 40.0%
GCCTTGATAAAGTGAGGAAA+TGG + chr5_2:9009960-9009979 Msa0755220:CDS 40.0%
!! AGGAAATGGATTGAAGATCG+TGG + chr5_2:9009974-9009993 Msa0755220:CDS 40.0%
ATGAGTTCTGCATTTGGTCT+TGG - chr5_2:9010028-9010047 None:intergenic 40.0%
GAGAGAATGAGTTCTGCATT+TGG - chr5_2:9010034-9010053 None:intergenic 40.0%
! GCTTCAAGACCTTTCAAGTA+GGG - chr5_2:9010133-9010152 None:intergenic 40.0%
! AGCTTCAAGACCTTTCAAGT+AGG - chr5_2:9010134-9010153 None:intergenic 40.0%
! TGAAGCTCTCAAAGCATCTA+AGG + chr5_2:9010147-9010166 Msa0755220:CDS 40.0%
TCTGTTTCAGGAATCAAAGC+AGG + chr5_2:9010268-9010287 Msa0755220:CDS 40.0%
CGGGTAGATATACCAATAAC+AGG - chr5_2:9010310-9010329 None:intergenic 40.0%
TCAGTAAATCCTCTGGGTTT+CGG - chr5_2:9010330-9010349 None:intergenic 40.0%
AAACCCAGAGGATTTACTGA+TGG + chr5_2:9010330-9010349 Msa0755220:CDS 40.0%
AACCCAGAGGATTTACTGAT+GGG + chr5_2:9010331-9010350 Msa0755220:CDS 40.0%
AAAGCCTGCCTTTCTGATAA+AGG + chr5_2:9010357-9010376 Msa0755220:CDS 40.0%
TTGGAAGAACTTGACAAGTC+CGG + chr5_2:9010409-9010428 Msa0755220:CDS 40.0%
CCCCTGCAACAAAATTATAC+AGG - chr5_2:9010524-9010543 None:intergenic 40.0%
AATACATGTGAGAGAGAGTG+AGG + chr5_2:9010662-9010681 Msa0755220:three_prime_UTR 40.0%
ATACATGTGAGAGAGAGTGA+GGG + chr5_2:9010663-9010682 Msa0755220:three_prime_UTR 40.0%
! CCATAGTTTAGCTTCGTGTG+TGG - chr5_2:9008791-9008810 None:intergenic 45.0%
CCACACACGAAGCTAAACTA+TGG + chr5_2:9008788-9008807 Msa0755220:exon 45.0%
!! AAGGAAGCGTTACCTTTCGA+CGG - chr5_2:9008829-9008848 None:intergenic 45.0%
ATCATTGTGCTTGCCAGCAA+CGG - chr5_2:9009737-9009756 None:intergenic 45.0%
GCACAATGATGACATTGCCT+TGG + chr5_2:9009747-9009766 Msa0755220:CDS 45.0%
ATAAGGAAGCCATGTTTCGG+AGG + chr5_2:9009815-9009834 Msa0755220:CDS 45.0%
TAGGGTTTACCTCCGAAACA+TGG - chr5_2:9009827-9009846 None:intergenic 45.0%
ACAATGGGGATATAGTTCGG+GGG - chr5_2:9009858-9009877 None:intergenic 45.0%
CACAATGGGGATATAGTTCG+GGG - chr5_2:9009859-9009878 None:intergenic 45.0%
GCACAATGGGGATATAGTTC+GGG - chr5_2:9009860-9009879 None:intergenic 45.0%
GAGCAACTGAAGCCGTTAAA+TGG + chr5_2:9009938-9009957 Msa0755220:CDS 45.0%
!! TGCATTTGGTCTTGGAGCAT+TGG - chr5_2:9010020-9010039 None:intergenic 45.0%
!! TTCAAGTAGGGTTCTGGATG+AGG - chr5_2:9010121-9010140 None:intergenic 45.0%
CATCCAGAACCCTACTTGAA+AGG + chr5_2:9010121-9010140 Msa0755220:CDS 45.0%
! AGACCTTTCAAGTAGGGTTC+TGG - chr5_2:9010127-9010146 None:intergenic 45.0%
GAATCCTGCAACGACAAAAC+AGG - chr5_2:9010250-9010269 None:intergenic 45.0%
TCGTTGCAGGATTCTGTTTC+AGG + chr5_2:9010256-9010275 Msa0755220:intron 45.0%
TATATCTACCCGAAACCCAG+AGG + chr5_2:9010318-9010337 Msa0755220:CDS 45.0%
CAGTAAATCCTCTGGGTTTC+GGG - chr5_2:9010329-9010348 None:intergenic 45.0%
CTCCCATCAGTAAATCCTCT+GGG - chr5_2:9010336-9010355 None:intergenic 45.0%
TCCAAAATTGTGGGCAGCAT+TGG + chr5_2:9010390-9010409 Msa0755220:CDS 45.0%
! TCCAATGCTGCCCACAATTT+TGG - chr5_2:9010394-9010413 None:intergenic 45.0%
! CCATAGTTTAGCTTCGTGTG+TGG - chr5_2:9008791-9008810 None:intergenic 45.0%
CCACACACGAAGCTAAACTA+TGG + chr5_2:9008788-9008807 Msa0755220:exon 45.0%
!! AAGGAAGCGTTACCTTTCGA+CGG - chr5_2:9008829-9008848 None:intergenic 45.0%
ATCATTGTGCTTGCCAGCAA+CGG - chr5_2:9009737-9009756 None:intergenic 45.0%
GCACAATGATGACATTGCCT+TGG + chr5_2:9009747-9009766 Msa0755220:CDS 45.0%
ATAAGGAAGCCATGTTTCGG+AGG + chr5_2:9009815-9009834 Msa0755220:CDS 45.0%
TAGGGTTTACCTCCGAAACA+TGG - chr5_2:9009827-9009846 None:intergenic 45.0%
ACAATGGGGATATAGTTCGG+GGG - chr5_2:9009858-9009877 None:intergenic 45.0%
CACAATGGGGATATAGTTCG+GGG - chr5_2:9009859-9009878 None:intergenic 45.0%
GCACAATGGGGATATAGTTC+GGG - chr5_2:9009860-9009879 None:intergenic 45.0%
GAGCAACTGAAGCCGTTAAA+TGG + chr5_2:9009938-9009957 Msa0755220:CDS 45.0%
!! TGCATTTGGTCTTGGAGCAT+TGG - chr5_2:9010020-9010039 None:intergenic 45.0%
!! TTCAAGTAGGGTTCTGGATG+AGG - chr5_2:9010121-9010140 None:intergenic 45.0%
CATCCAGAACCCTACTTGAA+AGG + chr5_2:9010121-9010140 Msa0755220:CDS 45.0%
! AGACCTTTCAAGTAGGGTTC+TGG - chr5_2:9010127-9010146 None:intergenic 45.0%
GAATCCTGCAACGACAAAAC+AGG - chr5_2:9010250-9010269 None:intergenic 45.0%
TCGTTGCAGGATTCTGTTTC+AGG + chr5_2:9010256-9010275 Msa0755220:intron 45.0%
TATATCTACCCGAAACCCAG+AGG + chr5_2:9010318-9010337 Msa0755220:CDS 45.0%
CAGTAAATCCTCTGGGTTTC+GGG - chr5_2:9010329-9010348 None:intergenic 45.0%
CTCCCATCAGTAAATCCTCT+GGG - chr5_2:9010336-9010355 None:intergenic 45.0%
TCCAAAATTGTGGGCAGCAT+TGG + chr5_2:9010390-9010409 Msa0755220:CDS 45.0%
! TCCAATGCTGCCCACAATTT+TGG - chr5_2:9010394-9010413 None:intergenic 45.0%
!! TTTATTGAATTATTATAAAT+TGG + chr5_2:9009602-9009621 Msa0755220:intron 5.0%
!! TTTATTGAATTATTATAAAT+TGG + chr5_2:9009602-9009621 Msa0755220:intron 5.0%
CTTCCGAGAATTCCGTCGAA+AGG + chr5_2:9008814-9008833 Msa0755220:CDS 50.0%
ATTGCCTTGGATCTCTTCCC+TGG + chr5_2:9009760-9009779 Msa0755220:CDS 50.0%
ATCACCAGGGAAGAGATCCA+AGG - chr5_2:9009767-9009786 None:intergenic 50.0%
TGGATCTCTTCCCTGGTGAT+CGG + chr5_2:9009767-9009786 Msa0755220:CDS 50.0%
CAATGGGGATATAGTTCGGG+GGG - chr5_2:9009857-9009876 None:intergenic 50.0%
GCTCCCATCAGTAAATCCTC+TGG - chr5_2:9010337-9010356 None:intergenic 50.0%
GTGCGACCGGCATAATTTCT+TGG + chr5_2:9010457-9010476 Msa0755220:three_prime_UTR 50.0%
GGCAATGAAGGTCAATGCCA+AGG + chr5_2:9010633-9010652 Msa0755220:three_prime_UTR 50.0%
CTTCCGAGAATTCCGTCGAA+AGG + chr5_2:9008814-9008833 Msa0755220:CDS 50.0%
ATTGCCTTGGATCTCTTCCC+TGG + chr5_2:9009760-9009779 Msa0755220:CDS 50.0%
ATCACCAGGGAAGAGATCCA+AGG - chr5_2:9009767-9009786 None:intergenic 50.0%
TGGATCTCTTCCCTGGTGAT+CGG + chr5_2:9009767-9009786 Msa0755220:CDS 50.0%
CAATGGGGATATAGTTCGGG+GGG - chr5_2:9009857-9009876 None:intergenic 50.0%
GCTCCCATCAGTAAATCCTC+TGG - chr5_2:9010337-9010356 None:intergenic 50.0%
GTGCGACCGGCATAATTTCT+TGG + chr5_2:9010457-9010476 Msa0755220:three_prime_UTR 50.0%
GGCAATGAAGGTCAATGCCA+AGG + chr5_2:9010633-9010652 Msa0755220:three_prime_UTR 50.0%
! TAAGTGGGTGGCGGCATATG+CGG + chr5_2:9008675-9008694 Msa0755220:five_prime_UTR 55.0%
!! TTGGCGGATTCCATTCGTCG+TGG + chr5_2:9008715-9008734 Msa0755220:five_prime_UTR 55.0%
GGATCTCTTCCCTGGTGATC+GGG + chr5_2:9009768-9009787 Msa0755220:CDS 55.0%
AACCTCGTTCCCGATCACCA+GGG - chr5_2:9009780-9009799 None:intergenic 55.0%
AAACCTCGTTCCCGATCACC+AGG - chr5_2:9009781-9009800 None:intergenic 55.0%
!! GTAGGGTTCTGGATGAGGCT+TGG - chr5_2:9010116-9010135 None:intergenic 55.0%
! CGGACCTGTTTTGTCGTTGC+AGG + chr5_2:9010243-9010262 Msa0755220:intron 55.0%
ATCAAAGCAGGAGTCGCTGC+TGG + chr5_2:9010280-9010299 Msa0755220:CDS 55.0%
TCAAAGCAGGAGTCGCTGCT+GGG + chr5_2:9010281-9010300 Msa0755220:CDS 55.0%
GCTGCTGGGATGCCTGTTAT+TGG + chr5_2:9010295-9010314 Msa0755220:CDS 55.0%
CATGTGAGAGAGAGTGAGGG+AGG + chr5_2:9010666-9010685 Msa0755220:three_prime_UTR 55.0%
TGAGAGAGAGTGAGGGAGGA+AGG + chr5_2:9010670-9010689 Msa0755220:three_prime_UTR 55.0%
GAGAGAGAGTGAGGGAGGAA+GGG + chr5_2:9010671-9010690 Msa0755220:three_prime_UTR 55.0%
! TAAGTGGGTGGCGGCATATG+CGG + chr5_2:9008675-9008694 Msa0755220:five_prime_UTR 55.0%
!! TTGGCGGATTCCATTCGTCG+TGG + chr5_2:9008715-9008734 Msa0755220:five_prime_UTR 55.0%
GGATCTCTTCCCTGGTGATC+GGG + chr5_2:9009768-9009787 Msa0755220:CDS 55.0%
AACCTCGTTCCCGATCACCA+GGG - chr5_2:9009780-9009799 None:intergenic 55.0%
AAACCTCGTTCCCGATCACC+AGG - chr5_2:9009781-9009800 None:intergenic 55.0%
!! GTAGGGTTCTGGATGAGGCT+TGG - chr5_2:9010116-9010135 None:intergenic 55.0%
! CGGACCTGTTTTGTCGTTGC+AGG + chr5_2:9010243-9010262 Msa0755220:intron 55.0%
ATCAAAGCAGGAGTCGCTGC+TGG + chr5_2:9010280-9010299 Msa0755220:CDS 55.0%
TCAAAGCAGGAGTCGCTGCT+GGG + chr5_2:9010281-9010300 Msa0755220:CDS 55.0%
GCTGCTGGGATGCCTGTTAT+TGG + chr5_2:9010295-9010314 Msa0755220:CDS 55.0%
CATGTGAGAGAGAGTGAGGG+AGG + chr5_2:9010666-9010685 Msa0755220:three_prime_UTR 55.0%
TGAGAGAGAGTGAGGGAGGA+AGG + chr5_2:9010670-9010689 Msa0755220:three_prime_UTR 55.0%
GAGAGAGAGTGAGGGAGGAA+GGG + chr5_2:9010671-9010690 Msa0755220:three_prime_UTR 55.0%
TTCCCTGGTGATCGGGAACG+AGG + chr5_2:9009775-9009794 Msa0755220:CDS 60.0%
AGTTCGGGGGGAGGTGAGTA+GGG - chr5_2:9009845-9009864 None:intergenic 60.0%
TAGTTCGGGGGGAGGTGAGT+AGG - chr5_2:9009846-9009865 None:intergenic 60.0%
TGGGGATATAGTTCGGGGGG+AGG - chr5_2:9009854-9009873 None:intergenic 60.0%
AGAGAGTGAGGGAGGAAGGG+AGG + chr5_2:9010674-9010693 Msa0755220:three_prime_UTR 60.0%
GAGAGTGAGGGAGGAAGGGA+GGG + chr5_2:9010675-9010694 Msa0755220:three_prime_UTR 60.0%
TTCCCTGGTGATCGGGAACG+AGG + chr5_2:9009775-9009794 Msa0755220:CDS 60.0%
AGTTCGGGGGGAGGTGAGTA+GGG - chr5_2:9009845-9009864 None:intergenic 60.0%
TAGTTCGGGGGGAGGTGAGT+AGG - chr5_2:9009846-9009865 None:intergenic 60.0%
TGGGGATATAGTTCGGGGGG+AGG - chr5_2:9009854-9009873 None:intergenic 60.0%
AGAGAGTGAGGGAGGAAGGG+AGG + chr5_2:9010674-9010693 Msa0755220:three_prime_UTR 60.0%
GAGAGTGAGGGAGGAAGGGA+GGG + chr5_2:9010675-9010694 Msa0755220:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 9008610 9010752 9008610 ID=Msa0755220;Name=Msa0755220
chr5_2 mRNA 9008610 9010752 9008610 ID=Msa0755220-mRNA-1;Parent=Msa0755220;Name=Msa0755220-mRNA-1;_AED=0.05;_eAED=0.05;_QI=197|0.75|0.8|1|1|1|5|311|245
chr5_2 exon 9008610 9008835 9008610 ID=Msa0755220-mRNA-1:exon:4155;Parent=Msa0755220-mRNA-1
chr5_2 exon 9009430 9009547 9009430 ID=Msa0755220-mRNA-1:exon:4156;Parent=Msa0755220-mRNA-1
chr5_2 exon 9009685 9009836 9009685 ID=Msa0755220-mRNA-1:exon:4157;Parent=Msa0755220-mRNA-1
chr5_2 exon 9009928 9010189 9009928 ID=Msa0755220-mRNA-1:exon:4158;Parent=Msa0755220-mRNA-1
chr5_2 exon 9010265 9010752 9010265 ID=Msa0755220-mRNA-1:exon:4159;Parent=Msa0755220-mRNA-1
chr5_2 five_prime_UTR 9008610 9008806 9008610 ID=Msa0755220-mRNA-1:five_prime_utr;Parent=Msa0755220-mRNA-1
chr5_2 CDS 9008807 9008835 9008807 ID=Msa0755220-mRNA-1:cds;Parent=Msa0755220-mRNA-1
chr5_2 CDS 9009430 9009547 9009430 ID=Msa0755220-mRNA-1:cds;Parent=Msa0755220-mRNA-1
chr5_2 CDS 9009685 9009836 9009685 ID=Msa0755220-mRNA-1:cds;Parent=Msa0755220-mRNA-1
chr5_2 CDS 9009928 9010189 9009928 ID=Msa0755220-mRNA-1:cds;Parent=Msa0755220-mRNA-1
chr5_2 CDS 9010265 9010441 9010265 ID=Msa0755220-mRNA-1:cds;Parent=Msa0755220-mRNA-1
chr5_2 three_prime_UTR 9010442 9010752 9010442 ID=Msa0755220-mRNA-1:three_prime_utr;Parent=Msa0755220-mRNA-1
Gene Sequence

>Msa0755220

ATGGCTACTTCCGAGAATTCCGTCGAAAGCAGCAAGAGTTCTCTTACCAAACTTGCTCCAATTGAAGCAGTGCTGTTTGATATAGACGGAACTCTTTGTGATTCTGACCCAATCCACTATTATGCTTTTCGTGAAATGCTTCAAGAGATTGGTTTCAATGGAGGTAATCCTATAACAGAGGAATTTTTTATTGCGACCGTTGCTGGCAAGCACAATGATGACATTGCCTTGGATCTCTTCCCTGGTGATCGGGAACGAGGTTTAAAGTTTGTAGAAGATAAGGAAGCCATGTTTCGGAGATTAGCAGCTGAGCAACTGAAGCCGTTAAATGGCCTTGATAAAGTGAGGAAATGGATTGAAGATCGTGGATTGAAGCGAGCTGCAGTTACCAATGCTCCAAGACCAAATGCAGAACTCATTCTCTCAAAACTTGGTCTCTCAGATTTCTTTCATGCTGTTATTATTGGTGATGAATGTGAACATGCCAAGCCTCATCCAGAACCCTACTTGAAAGGTCTTGAAGCTCTCAAAGCATCTAAGGATCACACATTTATATTTGAGGATTCTGTTTCAGGAATCAAAGCAGGAGTCGCTGCTGGGATGCCTGTTATTGGTATATCTACCCGAAACCCAGAGGATTTACTGATGGGAGCAAAGCCTGCCTTTCTGATAAAGGATTATGATGATCCAAAATTGTGGGCAGCATTGGAAGAACTTGACAAGTCCGGTTCTCATTAA
Protein sequence

>Msa0755220

MATSENSVESSKSSLTKLAPIEAVLFDIDGTLCDSDPIHYYAFREMLQEIGFNGGNPITEEFFIATVAGKHNDDIALDLFPGDRERGLKFVEDKEAMFRRLAAEQLKPLNGLDKVRKWIEDRGLKRAAVTNAPRPNAELILSKLGLSDFFHAVIIGDECEHAKPHPEPYLKGLEALKASKDHTFIFEDSVSGIKAGVAAGMPVIGISTRNPEDLLMGAKPAFLIKDYDDPKLWAALEELDKSGSH*