AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0645530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645530 MtrunA17_Chr4g0033361 98.973 584 6 0 1 584 1 584 0.0 1216
Msa0645530 MtrunA17_Chr2g0329221 80.100 598 103 4 1 584 1 596 0.0 967
Msa0645530 MtrunA17_Chr3g0110331 70.990 586 154 6 1 582 1 574 0.0 838
Msa0645530 MtrunA17_Chr3g0110341 69.244 582 149 5 1 582 30 581 0.0 791
Msa0645530 MtrunA17_Chr5g0447801 83.746 283 46 0 254 536 3 285 5.71e-177 502
Msa0645530 MtrunA17_Chr4g0038181 41.841 478 233 9 57 519 2 449 4.52e-128 383
Msa0645530 MtrunA17_Chr4g0034371 29.423 537 336 13 18 529 2 520 5.02e-65 222
Msa0645530 MtrunA17_Chr4g0038201 36.438 365 164 11 38 395 10 313 6.45e-61 205
Msa0645530 MtrunA17_Chr4g0038191 56.667 90 38 1 430 519 2 90 1.62e-26 104
Msa0645530 MtrunA17_Chr5g0434721 25.229 218 121 6 117 329 134 314 4.02e-15 76.6
Msa0645530 MtrunA17_Chr3g0103961 24.359 234 166 7 102 329 20 248 1.18e-13 71.2
Msa0645530 MtrunA17_Chr3g0103941 24.123 228 152 9 124 343 33 247 1.10e-12 68.6
Msa0645530 MtrunA17_Chr2g0301841 25.743 202 140 6 129 325 88 284 4.95e-12 67.0
Msa0645530 MtrunA17_Chr4g0029991 26.190 210 135 7 136 331 306 509 1.25e-11 67.4
Msa0645530 MtrunA17_Chr3g0103931 24.402 209 146 7 127 330 43 244 1.62e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645530 AT2G31510.1 72.887 568 138 5 1 559 1 561 0.0 848
Msa0645530 AT1G65430.1 69.338 574 159 4 18 584 4 567 0.0 823
Msa0645530 AT2G31510.3 76.892 489 109 2 74 559 2 489 0.0 793
Msa0645530 AT2G31510.2 74.206 504 118 3 1 498 1 498 0.0 791
Msa0645530 AT1G05890.1 70.385 520 138 4 20 533 16 525 0.0 769
Msa0645530 AT1G05890.2 73.684 475 122 2 59 533 96 567 0.0 754
Msa0645530 AT2G31770.1 56.673 517 195 8 16 522 3 500 0.0 599
Msa0645530 AT2G31760.1 59.140 465 171 6 57 519 40 487 0.0 582
Msa0645530 AT2G31780.1 55.677 458 179 8 1 451 1 441 0.0 520
Msa0645530 AT1G05880.2 39.407 472 253 8 61 523 40 487 1.06e-107 333
Msa0645530 AT1G05880.1 39.195 472 247 10 61 523 40 480 2.98e-103 321
Msa0645530 AT1G05880.3 38.546 454 246 8 61 505 40 469 1.94e-97 305
Msa0645530 AT4G34370.1 30.490 551 330 18 19 535 2 533 9.93e-68 231
Msa0645530 AT2G16090.1 29.573 585 342 18 19 559 2 560 1.63e-63 219
Msa0645530 AT2G16090.3 30.286 525 313 15 19 516 2 500 1.32e-62 216
Msa0645530 AT2G16090.4 29.016 579 347 16 19 559 2 554 2.37e-62 216
Msa0645530 AT3G27710.1 29.412 476 294 14 62 516 45 499 5.78e-59 206
Msa0645530 AT5G63750.1 29.541 501 297 15 57 519 6 488 2.38e-58 204
Msa0645530 AT2G16090.2 29.672 519 303 15 82 559 3 500 2.43e-58 204
Msa0645530 AT2G16090.5 30.501 459 274 12 82 516 3 440 2.82e-57 200
Msa0645530 AT5G08730.1 27.484 473 307 10 58 523 6 449 4.12e-56 197
Msa0645530 AT5G63730.1 27.190 548 315 18 52 580 4 486 2.58e-50 181
Msa0645530 AT4G34370.2 33.333 378 207 14 187 535 5 366 8.94e-48 173
Msa0645530 AT3G27720.1 32.047 337 190 10 199 516 143 459 8.15e-43 160
Msa0645530 AT5G63760.1 27.711 498 270 21 113 580 2 439 1.15e-42 159
Msa0645530 AT5G63760.3 27.711 498 270 21 113 580 2 439 1.15e-42 159
Msa0645530 AT5G63760.2 27.711 498 270 21 113 580 2 439 1.15e-42 159
Msa0645530 AT5G63760.4 28.021 389 207 15 208 580 2 333 1.03e-33 132
Msa0645530 AT5G10370.1 26.693 251 170 9 87 330 1512 1755 6.94e-12 69.3
Msa0645530 AT2G26135.1 26.291 213 139 8 121 325 140 342 1.80e-11 66.6
Msa0645530 AT3G45580.1 29.469 207 124 10 136 329 172 369 2.24e-11 66.6

Find 167 sgRNAs with CRISPR-Local

Find 436 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGAGTCCATTGAAGAATT+TGG 0.153603 4_3:-50864313 None:intergenic
CCAGCAAAATTCAAATTTAC+AGG 0.232442 4_3:-50867722 None:intergenic
ATCGACGTTGATTGCAAATC+TGG 0.244897 4_3:-50871337 None:intergenic
GAATCTAGGGCTTGAGAAAT+TGG 0.246818 4_3:-50864278 None:intergenic
AAGGAATAGAAGTTGAAAAT+TGG 0.256098 4_3:-50864155 None:intergenic
CAAGCCCTAGATTCTCGATT+TGG 0.256493 4_3:+50864287 Msa0645530:five_prime_UTR
TCTTCATCGTCTTCACATAT+TGG 0.270709 4_3:-50871452 None:intergenic
TTCGATTGGTCGCTTGCATT+TGG 0.271459 4_3:-50867662 None:intergenic
GAATTATATACCATATCATT+TGG 0.302570 4_3:+50871714 Msa0645530:three_prime_UTR
GATATCAGATTCCTTCAATA+TGG 0.313478 4_3:-50865239 None:intergenic
TATCTCACCTCGCTAGTATT+AGG 0.330743 4_3:-50865960 None:intergenic
TGGCCCACCGCTCATAATAA+TGG 0.335297 4_3:-50868330 None:intergenic
CCCACTTGTGGCGCTGCTAT+TGG 0.344918 4_3:+50866498 Msa0645530:CDS
GGGAGCAGTAAGGGGAGAGC+TGG 0.349500 4_3:+50871215 Msa0645530:CDS
AGTCATTGAATTCTTTAGAT+TGG 0.359218 4_3:-50870962 None:intergenic
TCGATTGGTCGCTTGCATTT+GGG 0.365336 4_3:-50867661 None:intergenic
ATTACAAATCCCAAATGATA+TGG 0.368424 4_3:-50871724 None:intergenic
TGTCATCTTCCTGTCTTACT+TGG 0.369228 4_3:-50865261 None:intergenic
TTATATACACGAATATATCT+AGG 0.373577 4_3:-50871640 None:intergenic
GTCACAGCTTAAGTTTATTA+CGG 0.378239 4_3:+50870464 Msa0645530:CDS
CCGAAAAGCGGTTGGCTTGT+TGG 0.378590 4_3:+50865917 Msa0645530:CDS
AATCTAGGGCTTGAGAAATT+GGG 0.384209 4_3:-50864277 None:intergenic
TATGCACGATGCTCACGATA+TGG 0.384878 4_3:+50864342 Msa0645530:CDS
TACTACTTCGTCACCACAAT+TGG 0.386991 4_3:+50865332 Msa0645530:CDS
GGGAGAGCTGGGAGAGGAAA+GGG 0.387635 4_3:+50871227 Msa0645530:CDS
CGTGTATATAAATAACCTTA+TGG 0.392253 4_3:+50871652 Msa0645530:three_prime_UTR
GGATCCCAAATCGAGAATCT+AGG 0.392687 4_3:-50864292 None:intergenic
TTATATCGAAGACAATAAAA+AGG 0.396653 4_3:+50866590 Msa0645530:CDS
AATTATATACCATATCATTT+GGG 0.399795 4_3:+50871715 Msa0645530:three_prime_UTR
ATCCATACTGTTTCTCATGC+TGG 0.403926 4_3:+50866155 Msa0645530:CDS
GTATTAGGATGCTGGACAAC+TGG 0.406004 4_3:-50865945 None:intergenic
AACTATCCTCGCTCTGGGAT+TGG 0.407143 4_3:+50866115 Msa0645530:CDS
AAGCCCTAGATTCTCGATTT+GGG 0.408853 4_3:+50864288 Msa0645530:five_prime_UTR
GACTTTCGTACAAAATTAGC+TGG 0.416189 4_3:+50870981 Msa0645530:CDS
GCAGCGCCACAAGTGGGTTC+AGG 0.416212 4_3:-50866492 None:intergenic
TTGGGATCCAAATTCTTCAA+TGG 0.417203 4_3:+50864306 Msa0645530:exon
TCCCAGCATGAGAAACAGTA+TGG 0.418225 4_3:-50866157 None:intergenic
GGGTTCTTCTCATTATATGC+TGG 0.420860 4_3:+50871427 Msa0645530:three_prime_UTR
ACTGCACCAAAGGCTGAGAT+TGG 0.427723 4_3:+50871406 Msa0645530:three_prime_UTR
AACAAATTCAGCTGAGTGAT+AGG 0.433492 4_3:-50871506 None:intergenic
TTTGAAAACTATCCTCGCTC+TGG 0.436202 4_3:+50866109 Msa0645530:CDS
TATCCGATGTAGATGCTAAC+GGG 0.436487 4_3:+50871153 Msa0645530:CDS
GGGGAGAGCTGGGAGAGGAA+AGG 0.438486 4_3:+50871226 Msa0645530:CDS
TTAGTGAGGGCTTTAGAGAA+TGG 0.439616 4_3:+50871128 Msa0645530:CDS
TATATAAATAACCTTATGGT+TGG 0.440179 4_3:+50871656 Msa0645530:three_prime_UTR
GGCCCACCGCTCATAATAAT+GGG 0.441437 4_3:-50868329 None:intergenic
TAAAATGTAACCCAACCATA+AGG 0.442051 4_3:-50871667 None:intergenic
CTGAAATGGACGTATGCATA+TGG 0.442573 4_3:+50870720 Msa0645530:CDS
AAGAACCCAATCTCAGCCTT+TGG 0.445930 4_3:-50871412 None:intergenic
TACTGAAAGAAGAAGGGAAA+TGG 0.451324 4_3:+50868282 Msa0645530:CDS
GGTCGCTTGCATTTGGGACA+TGG 0.453953 4_3:-50867655 None:intergenic
TGTAGAAATCGTCATCTTCA+AGG 0.456356 4_3:-50864369 None:intergenic
CACTGGACGATGAGCCTCCT+CGG 0.458483 4_3:-50867115 None:intergenic
ATGATGATACTGAAAGAAGA+AGG 0.463836 4_3:+50868275 Msa0645530:CDS
GGAGCAGTAAGGGGAGAGCT+GGG 0.464600 4_3:+50871216 Msa0645530:CDS
ACATCCAGGACCATCATTGA+TGG 0.478158 4_3:-50866454 None:intergenic
AGCAGCTAAGCAAGAGGGAG+TGG 0.478756 4_3:+50868161 Msa0645530:CDS
TCCATACTGTTTCTCATGCT+GGG 0.479243 4_3:+50866156 Msa0645530:CDS
AGTGTAGGAGAGTGCTGAAA+TGG 0.479640 4_3:+50870706 Msa0645530:CDS
ATAAGATCTACGAAGGTAAC+GGG 0.483111 4_3:-50866571 None:intergenic
TCAAAGTGGTGTCCTGCCCC+TGG 0.492940 4_3:+50866914 Msa0645530:CDS
CAGAGTCTGAAAACATGAAC+TGG 0.493565 4_3:+50867178 Msa0645530:CDS
GATACATACAGATTGGTTGC+TGG 0.496836 4_3:-50868350 None:intergenic
ATCTGATATCCAAGTAAGAC+AGG 0.497385 4_3:+50865252 Msa0645530:CDS
AGGTGAAGCAGAATCTGGTC+TGG 0.499622 4_3:+50870884 Msa0645530:intron
TATTACGGAGGCCTGGCTGC+AGG 0.501896 4_3:+50870479 Msa0645530:CDS
TCAACAAGATAGTTGACAAA+AGG 0.502770 4_3:-50871748 None:intergenic
ACCAATAGCAGCGCCACAAG+TGG 0.504223 4_3:-50866499 None:intergenic
ATAAACTTAAGCTGTGACTC+AGG 0.505087 4_3:-50870459 None:intergenic
GGAAATGGCGAAGAATTCAT+TGG 0.506032 4_3:+50868297 Msa0645530:CDS
GAAACACTTGTTACGGTGCG+TGG 0.510936 4_3:+50871381 Msa0645530:three_prime_UTR
TACTGTTTCTCATGCTGGGA+AGG 0.514636 4_3:+50866160 Msa0645530:CDS
ATATAAATAACCTTATGGTT+GGG 0.517339 4_3:+50871657 Msa0645530:three_prime_UTR
AAGTTGAAAATTGGAAGATA+AGG 0.517922 4_3:-50864146 None:intergenic
GAAATTGAATTTACCAATTG+TGG 0.519364 4_3:-50865345 None:intergenic
TATCCACATAGGTTATGCCT+TGG 0.520190 4_3:+50868081 Msa0645530:intron
AATCTCAGCCTTTGGTGCAG+TGG 0.521654 4_3:-50871404 None:intergenic
AAATGCTGCAGGGAGCAGTA+AGG 0.522523 4_3:+50871205 Msa0645530:CDS
CCTCGCTAGTATTAGGATGC+TGG 0.523850 4_3:-50865953 None:intergenic
AGCATCGTGCATATCATCTT+CGG 0.523950 4_3:-50864332 None:intergenic
CGATTTCTACAGTGGTGATA+CGG 0.524021 4_3:+50864381 Msa0645530:CDS
TTGAAAACTATCCTCGCTCT+GGG 0.528875 4_3:+50866110 Msa0645530:CDS
CTGCACCAAAGGCTGAGATT+GGG 0.530403 4_3:+50871407 Msa0645530:three_prime_UTR
TCCGTTAGAAACACTTGTTA+CGG 0.532432 4_3:+50871374 Msa0645530:three_prime_UTR
ACCACAGTGCCACAGTCCAC+TGG 0.533681 4_3:-50867132 None:intergenic
TTAAGTTTATTACGGAGGCC+TGG 0.533852 4_3:+50870472 Msa0645530:CDS
GTGCGTGGCCACTGCACCAA+AGG 0.538093 4_3:+50871396 Msa0645530:three_prime_UTR
GATCCCAAATCGAGAATCTA+GGG 0.539031 4_3:-50864291 None:intergenic
CAGCAATTCCTCAGTGCTGA+AGG 0.541611 4_3:+50870939 Msa0645530:CDS
CAAAATTAGCTGGATTGACT+AGG 0.541759 4_3:+50870991 Msa0645530:CDS
GTCGTGAAAGGAAAGAAGAA+AGG 0.546265 4_3:-50864174 None:intergenic
ACGTCCATCAATGATGGTCC+TGG 0.548432 4_3:+50866450 Msa0645530:CDS
TGAGCTCGTTGCTTTGCTGA+AGG 0.552429 4_3:-50871180 None:intergenic
ATCAGCACGTCCATCAATGA+TGG 0.552763 4_3:+50866444 Msa0645530:CDS
CAAATCATTTACCTGCAGCC+AGG 0.554241 4_3:-50870490 None:intergenic
ATAGGTTATGCCTTGGTGCA+TGG 0.554256 4_3:+50868088 Msa0645530:intron
TGATGATACTGAAAGAAGAA+GGG 0.556998 4_3:+50868276 Msa0645530:CDS
TACAGTGGTGATACGGAAGA+AGG 0.559004 4_3:+50864388 Msa0645530:CDS
AATGCTGCAGGGAGCAGTAA+GGG 0.560155 4_3:+50871206 Msa0645530:CDS
ACTTAAGCTGTGACTCAGGT+TGG 0.561742 4_3:-50870455 None:intergenic
GAACTTCTGATGATAGTCAC+TGG 0.562651 4_3:+50871267 Msa0645530:CDS
CAGTTCTTTGAGTATTTGCA+AGG 0.563576 4_3:+50870777 Msa0645530:CDS
AATCAACGTCGATGAAAATG+TGG 0.565537 4_3:+50871347 Msa0645530:exon
CTACTTCGAGAATTTAGTGA+GGG 0.566132 4_3:+50871115 Msa0645530:CDS
AGTAAGGGGAGAGCTGGGAG+AGG 0.566304 4_3:+50871221 Msa0645530:CDS
TGCTGTGGCCAGCTTACATG+TGG 0.566414 4_3:+50866079 Msa0645530:intron
ATCTAGGGCTTGAGAAATTG+GGG 0.572034 4_3:-50864276 None:intergenic
TCTTCCAGATAGTTGAGTGT+AGG 0.573883 4_3:+50870691 Msa0645530:intron
GCATATTCACAACCAGGGGC+AGG 0.573937 4_3:-50866926 None:intergenic
CTATCCGATGTAGATGCTAA+CGG 0.574691 4_3:+50871152 Msa0645530:CDS
CAGCAAAATTCAAATTTACA+GGG 0.574826 4_3:-50867721 None:intergenic
TGTTGTAACATAATAGATGC+TGG 0.575149 4_3:+50871562 Msa0645530:three_prime_UTR
TCAGACCATGGTGAAAGAAC+TGG 0.575256 4_3:+50868111 Msa0645530:CDS
GGGATTGGAATGGCTTCTTG+TGG 0.575363 4_3:+50866130 Msa0645530:CDS
AGTGATTATGATGATGATGC+TGG 0.577389 4_3:+50864427 Msa0645530:CDS
TCCTCGCTCTGGGATTGGAA+TGG 0.579366 4_3:+50866120 Msa0645530:CDS
GTAGAAATCGTCATCTTCAA+GGG 0.579796 4_3:-50864368 None:intergenic
AAATTCAGCTGAGTGATAGG+AGG 0.580861 4_3:-50871503 None:intergenic
ACTGTGGCACTGTGGTAAAG+TGG 0.587937 4_3:+50867139 Msa0645530:CDS
ACACCCATTATTATGAGCGG+TGG 0.591402 4_3:+50868326 Msa0645530:CDS
TATAAGATCTACGAAGGTAA+CGG 0.591928 4_3:-50866572 None:intergenic
GAGCGAGTCCGAAAAGCGGT+TGG 0.598853 4_3:+50865909 Msa0645530:CDS
CATCTCAACATCAAACATCC+AGG 0.599803 4_3:-50866468 None:intergenic
CCAATAGCAGCGCCACAAGT+GGG 0.601504 4_3:-50866498 None:intergenic
AATTCAGCTGAGTGATAGGA+GGG 0.602797 4_3:-50871502 None:intergenic
GTACTATTTACCTGAGCATG+AGG 0.605750 4_3:+50870743 Msa0645530:CDS
ATGCTGCAGGGAGCAGTAAG+GGG 0.605774 4_3:+50871207 Msa0645530:CDS
CACCCATTATTATGAGCGGT+GGG 0.609091 4_3:+50868327 Msa0645530:CDS
TGAAATGGACGTATGCATAT+GGG 0.610291 4_3:+50870721 Msa0645530:CDS
AGATGTCCTGAACCCACTTG+TGG 0.620859 4_3:+50866486 Msa0645530:CDS
CAAAATTCAAATTTACAGGG+TGG 0.621414 4_3:-50867718 None:intergenic
TTATGAAGCAGCTAAGCAAG+AGG 0.623330 4_3:+50868155 Msa0645530:CDS
CGAGGAGGCTCATCGTCCAG+TGG 0.625879 4_3:+50867116 Msa0645530:CDS
TGATACGGAAGAAGGTGCGA+TGG 0.632626 4_3:+50864396 Msa0645530:CDS
GAAGATGACGATTTCTACAG+TGG 0.633360 4_3:+50864373 Msa0645530:CDS
TATGAAGCAGCTAAGCAAGA+GGG 0.635282 4_3:+50868156 Msa0645530:CDS
TGAAGAGCGAGTCCGAAAAG+CGG 0.637498 4_3:+50865905 Msa0645530:CDS
ATCAACGTCGATGAAAATGT+GGG 0.639035 4_3:+50871348 Msa0645530:exon
GATTGAGTCTCGTCGACCTG+AGG 0.639074 4_3:+50864474 Msa0645530:CDS
AATGTGATGATGGTCGTGAA+AGG 0.639781 4_3:-50864186 None:intergenic
GCCATTCCAATCCCAGAGCG+AGG 0.643551 4_3:-50866121 None:intergenic
GACCATGGTGAAAGAACTGG+TGG 0.643713 4_3:+50868114 Msa0645530:CDS
ACAGCTTAAGTTTATTACGG+AGG 0.646409 4_3:+50870467 Msa0645530:CDS
CTTCGATATAAGATCTACGA+AGG 0.648378 4_3:-50866578 None:intergenic
GCTCATCGTCCAGTGGACTG+TGG 0.650054 4_3:+50867123 Msa0645530:CDS
TACTATTTACCTGAGCATGA+GGG 0.652156 4_3:+50870744 Msa0645530:CDS
ACTACTTCGAGAATTTAGTG+AGG 0.655176 4_3:+50871114 Msa0645530:CDS
GTAACTGCATATTCACAACC+AGG 0.655441 4_3:-50866932 None:intergenic
AACAAAAGCTATACGAACAG+AGG 0.655471 4_3:-50866991 None:intergenic
AACTGCATATTCACAACCAG+GGG 0.659172 4_3:-50866930 None:intergenic
ATTGCAAATCTGGCATGTGG+TGG 0.660392 4_3:-50871327 None:intergenic
ACCGTAACAAGTGTTTCTAA+CGG 0.660392 4_3:-50871375 None:intergenic
AACCACCAGTTCTTTCACCA+TGG 0.660461 4_3:-50868116 None:intergenic
TCAGTAAAGTGCATGATGCA+TGG 0.665829 4_3:+50865874 Msa0645530:CDS
TAACTGCATATTCACAACCA+GGG 0.669788 4_3:-50866931 None:intergenic
TAGATTGGCCTTCAGCACTG+AGG 0.685503 4_3:-50870947 None:intergenic
GATACACCCATTATTATGAG+CGG 0.686220 4_3:+50868323 Msa0645530:CDS
TTGATTGCAAATCTGGCATG+TGG 0.691443 4_3:-50871330 None:intergenic
CCAGCATCCTAATACTAGCG+AGG 0.692364 4_3:+50865953 Msa0645530:CDS
GAATCTACAGTGCACCGAGG+AGG 0.695123 4_3:+50867101 Msa0645530:intron
AGCCCCGTTAGCATCTACAT+CGG 0.697364 4_3:-50871156 None:intergenic
CATGGTCTGACCATGCACCA+AGG 0.699416 4_3:-50868098 None:intergenic
CTTGGTGCATGGTCAGACCA+TGG 0.701151 4_3:+50868099 Msa0645530:CDS
ATCCGATGTAGATGCTAACG+GGG 0.717867 4_3:+50871154 Msa0645530:CDS
TCCAGTGGACTGTGGCACTG+TGG 0.734400 4_3:+50867131 Msa0645530:CDS
GGCAGATTTGACATTCACAG+AGG 0.749917 4_3:-50871306 None:intergenic
ACTGAATCTACAGTGCACCG+AGG 0.790165 4_3:+50867098 Msa0645530:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTCTCTATATAATTTTT+TGG + chr4_3:50866046-50866065 Msa0645530:intron 10.0%
!!! TAAGAATTTTATAAATGAAA+TGG + chr4_3:50867401-50867420 Msa0645530:intron 10.0%
!!! TTTTGAACAATTATTTTTTT+GGG + chr4_3:50867996-50868015 Msa0645530:intron 10.0%
!! AATTAGATTTAGATAATATA+AGG - chr4_3:50869428-50869447 None:intergenic 10.0%
!!! ATTTGATGATAATTATTTAT+AGG - chr4_3:50869540-50869559 None:intergenic 10.0%
!! ATAAAATAAAAATGTGATGA+TGG - chr4_3:50864199-50864218 None:intergenic 15.0%
!!! TGTTTTTTTTTTTTTTGATC+AGG + chr4_3:50864669-50864688 Msa0645530:intron 15.0%
!! AATCAACATTAAAAAAAACA+GGG - chr4_3:50864751-50864770 None:intergenic 15.0%
!! TAATCAACATTAAAAAAAAC+AGG - chr4_3:50864752-50864771 None:intergenic 15.0%
!! AAAAAAAACATATTCAAAAC+AGG - chr4_3:50865376-50865395 None:intergenic 15.0%
!!! TACAAAACATAATCAATTTT+AGG - chr4_3:50865402-50865421 None:intergenic 15.0%
!!! AAATTGATTATGTTTTGTAA+AGG + chr4_3:50865403-50865422 Msa0645530:intron 15.0%
!!! AAAAAAAAAGTGTTTTTGTA+TGG + chr4_3:50865689-50865708 Msa0645530:intron 15.0%
!! ATAAATATAACATATGAAAC+AGG - chr4_3:50866342-50866361 None:intergenic 15.0%
!! AATATATCTAATGTCTTAAA+CGG + chr4_3:50867278-50867297 Msa0645530:intron 15.0%
!! ATTTGATTAAAAAACATGTT+GGG - chr4_3:50867769-50867788 None:intergenic 15.0%
!! AATTTGATTAAAAAACATGT+TGG - chr4_3:50867770-50867789 None:intergenic 15.0%
!! TAGTTTATATAACATAGAAA+AGG + chr4_3:50867933-50867952 Msa0645530:intron 15.0%
!! CAAAAAAATAATTGTTCAAA+AGG - chr4_3:50867997-50868016 None:intergenic 15.0%
!!! CTTTTGAACAATTATTTTTT+TGG + chr4_3:50867995-50868014 Msa0645530:intron 15.0%
!!! TTTGAACAATTATTTTTTTG+GGG + chr4_3:50867997-50868016 Msa0645530:intron 15.0%
!!! AAATCAATTTAGTTTTACAT+GGG - chr4_3:50869329-50869348 None:intergenic 15.0%
!!! AAAATCAATTTAGTTTTACA+TGG - chr4_3:50869330-50869349 None:intergenic 15.0%
!!! TATTTTTATGATCTTTATGT+TGG + chr4_3:50870583-50870602 Msa0645530:intron 15.0%
!!! CATTTTAAAAAATCATGATA+AGG + chr4_3:50871683-50871702 Msa0645530:three_prime_UTR 15.0%
!! AATTATATACCATATCATTT+GGG + chr4_3:50871715-50871734 Msa0645530:three_prime_UTR 15.0%
!!! TAATGTTGTTTATGTGAATT+TGG + chr4_3:50864591-50864610 Msa0645530:intron 20.0%
!! TACAGAATTTATGAAATGTT+TGG + chr4_3:50864809-50864828 Msa0645530:intron 20.0%
!!! AAAAAAAACAAGCTTTTGTT+TGG - chr4_3:50864894-50864913 None:intergenic 20.0%
!!! TCACTAAATCAATCTTTTTA+AGG - chr4_3:50864926-50864945 None:intergenic 20.0%
!!! TAGATTCTGTTTTTTTTTGT+AGG + chr4_3:50865022-50865041 Msa0645530:intron 20.0%
!! AAATGAATATGATTCAAATG+AGG + chr4_3:50865568-50865587 Msa0645530:intron 20.0%
!!! TGTTAATTCTGATCAAATTT+TGG + chr4_3:50866213-50866232 Msa0645530:intron 20.0%
!!! ATATGTCCTTTTTATTGTTT+TGG + chr4_3:50866249-50866268 Msa0645530:intron 20.0%
!!! TATGTCCTTTTTATTGTTTT+GGG + chr4_3:50866250-50866269 Msa0645530:intron 20.0%
!! TTATATCGAAGACAATAAAA+AGG + chr4_3:50866590-50866609 Msa0645530:CDS 20.0%
!! CAAAAGAAGTAAAAAAAATG+AGG - chr4_3:50866883-50866902 None:intergenic 20.0%
!! AAATTCTTATAAATGAAGTG+AGG - chr4_3:50867390-50867409 None:intergenic 20.0%
!! ATCAATAATTTATAGTTGCT+AGG + chr4_3:50868443-50868462 Msa0645530:intron 20.0%
!!! CTAATATTTTGATAGCTAAA+TGG + chr4_3:50868470-50868489 Msa0645530:intron 20.0%
!!! AGATAAGACTTTTTTTTTAG+TGG - chr4_3:50868907-50868926 None:intergenic 20.0%
!!! CTAAAAAAAAAGTCTTATCT+CGG + chr4_3:50868907-50868926 Msa0645530:intron 20.0%
!! ATGTATATAATTGATGTGAA+AGG - chr4_3:50869234-50869253 None:intergenic 20.0%
!! CATCAATTATATACATGTAT+AGG + chr4_3:50869238-50869257 Msa0645530:intron 20.0%
!!! AATCAATTTAGTTTTACATG+GGG - chr4_3:50869328-50869347 None:intergenic 20.0%
!! TATCGAATAAGTATTAAACT+CGG - chr4_3:50869387-50869406 None:intergenic 20.0%
!! TATCTAAATCTCAGAATATT+TGG + chr4_3:50869454-50869473 Msa0645530:intron 20.0%
!!! TGAATTTTAATACATTGTCA+AGG + chr4_3:50869659-50869678 Msa0645530:intron 20.0%
!! ACTATAAAGTATAAACTAAC+CGG - chr4_3:50869853-50869872 None:intergenic 20.0%
!!! CAGTTTAAAATATAGAATCA+AGG - chr4_3:50869905-50869924 None:intergenic 20.0%
!! AGCTACAATACAAAATTAAA+AGG - chr4_3:50870151-50870170 None:intergenic 20.0%
!! AAAAAAAATCTAACTAGCAA+GGG - chr4_3:50870318-50870337 None:intergenic 20.0%
!!! TAATTAGAAACATGTGTTTT+TGG + chr4_3:50870821-50870840 Msa0645530:intron 20.0%
!! TATAGTTGAGTATTAATCAT+GGG - chr4_3:50870854-50870873 None:intergenic 20.0%
!! ATATAGTTGAGTATTAATCA+TGG - chr4_3:50870855-50870874 None:intergenic 20.0%
!!! TATTCTTAATTTTGATTTCC+TGG + chr4_3:50871065-50871084 Msa0645530:intron 20.0%
!!! TGTTGTTTATTTTCTGTTAT+AGG + chr4_3:50871525-50871544 Msa0645530:three_prime_UTR 20.0%
!! TTATATACACGAATATATCT+AGG - chr4_3:50871643-50871662 None:intergenic 20.0%
!! TATATAAATAACCTTATGGT+TGG + chr4_3:50871656-50871675 Msa0645530:three_prime_UTR 20.0%
!! ATATAAATAACCTTATGGTT+GGG + chr4_3:50871657-50871676 Msa0645530:three_prime_UTR 20.0%
!! GAATTATATACCATATCATT+TGG + chr4_3:50871714-50871733 Msa0645530:three_prime_UTR 20.0%
! AAGGAATAGAAGTTGAAAAT+TGG - chr4_3:50864158-50864177 None:intergenic 25.0%
!! AAAAAAACAGGGTTTTTGTT+TGG - chr4_3:50864740-50864759 None:intergenic 25.0%
!! GTTGATTATGTGAATTTGTT+TGG + chr4_3:50864764-50864783 Msa0645530:intron 25.0%
!! TTTGGTTTCTTGAAATTACT+TGG + chr4_3:50864782-50864801 Msa0645530:intron 25.0%
! TTGGTTTCTTGAAATTACTT+GGG + chr4_3:50864783-50864802 Msa0645530:intron 25.0%
!! AAGATTGATTTAGTGATTAG+TGG + chr4_3:50864930-50864949 Msa0645530:intron 25.0%
!!! AGATAAGATGTTGGTTTTAA+TGG + chr4_3:50864998-50865017 Msa0645530:intron 25.0%
!!! ATTCTGTTTTTTTTTGTAGG+TGG + chr4_3:50865025-50865044 Msa0645530:intron 25.0%
!!! AACTGTGTTTGTTTTTTTGT+TGG + chr4_3:50865099-50865118 Msa0645530:intron 25.0%
!!! GTTTTTTTGTTGGTTTTGAA+TGG + chr4_3:50865109-50865128 Msa0645530:intron 25.0%
!! GCAAAATTTTACCATATTGA+AGG + chr4_3:50865228-50865247 Msa0645530:intron 25.0%
! GAAATTGAATTTACCAATTG+TGG - chr4_3:50865348-50865367 None:intergenic 25.0%
!! TGAAGTCTTTTAAACCTTAT+TGG + chr4_3:50865635-50865654 Msa0645530:intron 25.0%
! GAAACAAATATCAACCAATA+AGG - chr4_3:50865652-50865671 None:intergenic 25.0%
! GAAAGTTAAAACACTAAAGA+AGG - chr4_3:50865726-50865745 None:intergenic 25.0%
! TCAGAATTAACAAAAGAAGA+GGG - chr4_3:50866205-50866224 None:intergenic 25.0%
! ATCAGAATTAACAAAAGAAG+AGG - chr4_3:50866206-50866225 None:intergenic 25.0%
! TATCACCCAAAACAATAAAA+AGG - chr4_3:50866258-50866277 None:intergenic 25.0%
! AAAAAACTTAAGATGGGTAT+AGG - chr4_3:50866305-50866324 None:intergenic 25.0%
!!! TATACCCATCTTAAGTTTTT+TGG + chr4_3:50866304-50866323 Msa0645530:intron 25.0%
!!! AAGTTTTTTGGTAGCTTTTA+TGG + chr4_3:50866316-50866335 Msa0645530:intron 25.0%
! AAAGAACAAAAAAGAACTGA+AGG - chr4_3:50866384-50866403 None:intergenic 25.0%
!!! TGACATTTTTTTGTCCTTTT+CGG + chr4_3:50866408-50866427 Msa0645530:intron 25.0%
! TTGACATATTTATTATGTCC+TGG + chr4_3:50866729-50866748 Msa0645530:intron 25.0%
! GGAATTGTTTCCAATTATTA+CGG + chr4_3:50867031-50867050 Msa0645530:intron 25.0%
! AAATCCAATACCGTAATAAT+TGG - chr4_3:50867044-50867063 None:intergenic 25.0%
! TCAACTTAAGCATGAAAATA+TGG - chr4_3:50867339-50867358 None:intergenic 25.0%
! AGTTATAGTCCAAACATAAA+GGG - chr4_3:50867444-50867463 None:intergenic 25.0%
! AAGTTATAGTCCAAACATAA+AGG - chr4_3:50867445-50867464 None:intergenic 25.0%
!! AATAATCCATGGACTATATT+AGG + chr4_3:50867478-50867497 Msa0645530:intron 25.0%
!!! ATGAATAAATTGCTGCTTTT+TGG + chr4_3:50867563-50867582 Msa0645530:intron 25.0%
! AATTAAATTAACAGTCAGCT+CGG - chr4_3:50867608-50867627 None:intergenic 25.0%
! CTGTTAATTTAATTACTTGC+AGG + chr4_3:50867614-50867633 Msa0645530:intron 25.0%
! CAGCAAAATTCAAATTTACA+GGG - chr4_3:50867724-50867743 None:intergenic 25.0%
! TATATTGCATTCTATGTTCT+TGG + chr4_3:50867789-50867808 Msa0645530:intron 25.0%
! TTTCAAGAAAGTTACAAGTA+TGG + chr4_3:50867854-50867873 Msa0645530:intron 25.0%
! TTCAAGAAAGTTACAAGTAT+GGG + chr4_3:50867855-50867874 Msa0645530:intron 25.0%
!! TTGATACATTTTATCCACAT+AGG + chr4_3:50868070-50868089 Msa0645530:intron 25.0%
! AAGTTTATTATTTCGTTGCA+TGG + chr4_3:50868501-50868520 Msa0645530:intron 25.0%
!!! CTTATGTATTTTTTGTTCAC+TGG + chr4_3:50868547-50868566 Msa0645530:intron 25.0%
!! TCATAAAAGCTTAAGTTGTT+AGG - chr4_3:50868610-50868629 None:intergenic 25.0%
!! TGCACAAACATAAAATTTTG+CGG - chr4_3:50868933-50868952 None:intergenic 25.0%
! TTAACCATATAATCCACATA+GGG - chr4_3:50869031-50869050 None:intergenic 25.0%
!! GAAGATTTTTCTATAACTAG+AGG - chr4_3:50869119-50869138 None:intergenic 25.0%
! TCGTTGTAAATATCTTTACT+TGG + chr4_3:50869158-50869177 Msa0645530:intron 25.0%
! TGTGAAAGGAAAAATAATGA+TGG - chr4_3:50869220-50869239 None:intergenic 25.0%
! TTTATGTGATGTGAATATCT+TGG + chr4_3:50869347-50869366 Msa0645530:intron 25.0%
! TTCGATATATGTTTATCATG+TGG + chr4_3:50869400-50869419 Msa0645530:intron 25.0%
! AGCTAAACTTAATGCTAAAT+TGG - chr4_3:50869502-50869521 None:intergenic 25.0%
! TGTTGAATGATTGACTAATA+AGG + chr4_3:50869760-50869779 Msa0645530:intron 25.0%
! TTTGAATATGCAAACTTACA+TGG + chr4_3:50869814-50869833 Msa0645530:intron 25.0%
! ATAAGCTACTATTGTAGAAA+TGG - chr4_3:50870292-50870311 None:intergenic 25.0%
! CAAAAAAAATCTAACTAGCA+AGG - chr4_3:50870319-50870338 None:intergenic 25.0%
! GAAATGAACTTCAGAAATTA+TGG - chr4_3:50870631-50870650 None:intergenic 25.0%
!!! AATTTCTGAAGTTCATTTCA+AGG + chr4_3:50870632-50870651 Msa0645530:intron 25.0%
! ATAGTTGAGTATTAATCATG+GGG - chr4_3:50870853-50870872 None:intergenic 25.0%
!!! CTCAACTATATTTTGTTTTC+AGG + chr4_3:50870864-50870883 Msa0645530:intron 25.0%
! AGTCATTGAATTCTTTAGAT+TGG - chr4_3:50870965-50870984 None:intergenic 25.0%
! CGTGTATATAAATAACCTTA+TGG + chr4_3:50871652-50871671 Msa0645530:three_prime_UTR 25.0%
! ATTACAAATCCCAAATGATA+TGG - chr4_3:50871727-50871746 None:intergenic 25.0%
GAGAAATTGATATATACCTC+AGG - chr4_3:50864493-50864512 None:intergenic 30.0%
GAAAACATGTTCAGAAAATG+TGG - chr4_3:50864712-50864731 None:intergenic 30.0%
! TTGTTTGGTTTCAGAAAATG+TGG - chr4_3:50864879-50864898 None:intergenic 30.0%
! ATTGATTTAGTGATTAGTGG+TGG + chr4_3:50864933-50864952 Msa0645530:intron 30.0%
AGGTTAATTGCAGTAATTGT+TGG + chr4_3:50864963-50864982 Msa0645530:intron 30.0%
GCTATAATGAGATAAGATGT+TGG + chr4_3:50864989-50865008 Msa0645530:intron 30.0%
AACCAAACTAATCAGTTACA+CGG - chr4_3:50865200-50865219 None:intergenic 30.0%
GATATCAGATTCCTTCAATA+TGG - chr4_3:50865242-50865261 None:intergenic 30.0%
!!! ATGTGTTTTAGTCCTCATAA+AGG + chr4_3:50865501-50865520 Msa0645530:intron 30.0%
TTAGACTTTAGTCCTTTATG+AGG - chr4_3:50865516-50865535 None:intergenic 30.0%
CAGAATTAACAAAAGAAGAG+GGG - chr4_3:50866204-50866223 None:intergenic 30.0%
GCTACCAAAAAACTTAAGAT+GGG - chr4_3:50866311-50866330 None:intergenic 30.0%
AGCTACCAAAAAACTTAAGA+TGG - chr4_3:50866312-50866331 None:intergenic 30.0%
ACAAAAAAGAACTGAAGGAA+AGG - chr4_3:50866379-50866398 None:intergenic 30.0%
TATAAGATCTACGAAGGTAA+CGG - chr4_3:50866575-50866594 None:intergenic 30.0%
TGGATAACATATAGTCTACA+TGG - chr4_3:50866658-50866677 None:intergenic 30.0%
CGCATGATGAAAATGAAATA+TGG - chr4_3:50866678-50866697 None:intergenic 30.0%
TTGATTGAGAAAAGTAGTGA+AGG - chr4_3:50866809-50866828 None:intergenic 30.0%
!!! TTGTTTTTGTCTAGTCAAAG+TGG + chr4_3:50866900-50866919 Msa0645530:intron 30.0%
GTTTCCAATTATTACGGTAT+TGG + chr4_3:50867037-50867056 Msa0645530:intron 30.0%
ATGTCTTAAACGGATACTAA+TGG + chr4_3:50867288-50867307 Msa0645530:intron 30.0%
!! ACTAATGGAGAGTATTTAAG+CGG + chr4_3:50867303-50867322 Msa0645530:intron 30.0%
!!! TTTTCATGCTTAAGTTGAAG+TGG + chr4_3:50867341-50867360 Msa0645530:intron 30.0%
TAGAATCCTAATATAGTCCA+TGG - chr4_3:50867487-50867506 None:intergenic 30.0%
ATTAAATTAACAGTCAGCTC+GGG - chr4_3:50867607-50867626 None:intergenic 30.0%
!!! CATCCTTGATTTTTTTCGAT+TGG - chr4_3:50867679-50867698 None:intergenic 30.0%
CAAAATTCAAATTTACAGGG+TGG - chr4_3:50867721-50867740 None:intergenic 30.0%
CCAGCAAAATTCAAATTTAC+AGG - chr4_3:50867725-50867744 None:intergenic 30.0%
! CCTGTAAATTTGAATTTTGC+TGG + chr4_3:50867722-50867741 Msa0645530:CDS 30.0%
AGTTACAAGTATGGGTATAT+TGG + chr4_3:50867863-50867882 Msa0645530:intron 30.0%
! GAACAAACTTTTCTTGATTC+AGG + chr4_3:50868199-50868218 Msa0645530:intron 30.0%
ATGATGATACTGAAAGAAGA+AGG + chr4_3:50868275-50868294 Msa0645530:CDS 30.0%
TGATGATACTGAAAGAAGAA+GGG + chr4_3:50868276-50868295 Msa0645530:CDS 30.0%
ATAGAGTGATACATACAGAT+TGG - chr4_3:50868360-50868379 None:intergenic 30.0%
TCACTCTATACTTACTTGTT+CGG + chr4_3:50868371-50868390 Msa0645530:intron 30.0%
!! GAAAGTACATCTATGGTTTT+CGG - chr4_3:50868586-50868605 None:intergenic 30.0%
TTTCTTTGGTCTCTCTTAAA+AGG + chr4_3:50868817-50868836 Msa0645530:intron 30.0%
! ATTTTCCTTTTGAACTTGAG+TGG + chr4_3:50868957-50868976 Msa0645530:intron 30.0%
GTTAACCATATAATCCACAT+AGG - chr4_3:50869032-50869051 None:intergenic 30.0%
!!! TTATCTTTTAGTCTTGGTTC+TGG - chr4_3:50869071-50869090 None:intergenic 30.0%
AGAACCAAGACTAAAAGATA+AGG + chr4_3:50869070-50869089 Msa0645530:intron 30.0%
! TTTTTCTATAACTAGAGGTG+TGG - chr4_3:50869114-50869133 None:intergenic 30.0%
!! CTAAGAAAGGTGTTATGATT+GGG - chr4_3:50869193-50869212 None:intergenic 30.0%
AGATTGATGGAAAGATATCA+GGG - chr4_3:50869276-50869295 None:intergenic 30.0%
AAGATTGATGGAAAGATATC+AGG - chr4_3:50869277-50869296 None:intergenic 30.0%
CTACTTACTACAAAGATTGA+TGG - chr4_3:50869289-50869308 None:intergenic 30.0%
!! TATTCTGAGATTTAGATAGC+AGG - chr4_3:50869452-50869471 None:intergenic 30.0%
AGAATCAAACTTTATACCAC+AGG - chr4_3:50869611-50869630 None:intergenic 30.0%
TCAATCATTCAACATAGTCA+AGG - chr4_3:50869754-50869773 None:intergenic 30.0%
ATATGCAAACTTACATGGAA+TGG + chr4_3:50869819-50869838 Msa0645530:intron 30.0%
AGTGATTTCTTTCTTGATTG+AGG + chr4_3:50869870-50869889 Msa0645530:intron 30.0%
!! TGTATTTTGTGTTACTACTC+TGG + chr4_3:50869923-50869942 Msa0645530:intron 30.0%
CAATACAAAATTAAAAGGCC+AGG - chr4_3:50870146-50870165 None:intergenic 30.0%
GTCACAGCTTAAGTTTATTA+CGG + chr4_3:50870464-50870483 Msa0645530:CDS 30.0%
TCATTTCAAGGTGAAATAGA+AGG + chr4_3:50870644-50870663 Msa0645530:intron 30.0%
ACACTACGAAAAAATATACC+AGG - chr4_3:50871086-50871105 None:intergenic 30.0%
TGTTGTAACATAATAGATGC+TGG + chr4_3:50871562-50871581 Msa0645530:three_prime_UTR 30.0%
TAAAATGTAACCCAACCATA+AGG - chr4_3:50871670-50871689 None:intergenic 30.0%
TCAACAAGATAGTTGACAAA+AGG - chr4_3:50871751-50871770 None:intergenic 30.0%
! AATCTAGGGCTTGAGAAATT+GGG - chr4_3:50864280-50864299 None:intergenic 35.0%
TTGGGATCCAAATTCTTCAA+TGG + chr4_3:50864306-50864325 Msa0645530:exon 35.0%
GTAGAAATCGTCATCTTCAA+GGG - chr4_3:50864371-50864390 None:intergenic 35.0%
TGTAGAAATCGTCATCTTCA+AGG - chr4_3:50864372-50864391 None:intergenic 35.0%
! AGTGATTATGATGATGATGC+TGG + chr4_3:50864427-50864446 Msa0645530:CDS 35.0%
ATTTAGTGATTAGTGGTGGT+TGG + chr4_3:50864937-50864956 Msa0645530:intron 35.0%
!!! CTGTTTTTTTTTGTAGGTGG+TGG + chr4_3:50865028-50865047 Msa0645530:intron 35.0%
CTAATCAGTTACACGGAAAT+CGG - chr4_3:50865193-50865212 None:intergenic 35.0%
! TTCCGTGTAACTGATTAGTT+TGG + chr4_3:50865195-50865214 Msa0645530:intron 35.0%
!! GTGTAACTGATTAGTTTGGT+TGG + chr4_3:50865199-50865218 Msa0645530:intron 35.0%
ATCTGATATCCAAGTAAGAC+AGG + chr4_3:50865252-50865271 Msa0645530:CDS 35.0%
!!! TTGATTTTTTCTCCTGCTGT+GGG + chr4_3:50866019-50866038 Msa0645530:intron 35.0%
!! TTTGGTATTTGTTTCTGCTG+TGG + chr4_3:50866064-50866083 Msa0645530:intron 35.0%
TTAACAAAAGAAGAGGGGAA+TGG - chr4_3:50866199-50866218 None:intergenic 35.0%
GGGTGATAGAATATGCAATT+TGG + chr4_3:50866270-50866289 Msa0645530:intron 35.0%
ATAAGATCTACGAAGGTAAC+GGG - chr4_3:50866574-50866593 None:intergenic 35.0%
CTTCGATATAAGATCTACGA+AGG - chr4_3:50866581-50866600 None:intergenic 35.0%
TAGTCTACATGGATTCGAAT+TGG - chr4_3:50866647-50866666 None:intergenic 35.0%
!! TTACTAGTTTAGCTTTAGCC+AGG - chr4_3:50866750-50866769 None:intergenic 35.0%
TAACTGCATATTCACAACCA+GGG - chr4_3:50866934-50866953 None:intergenic 35.0%
!!! TATGCAGTTACTTTTGATGC+TGG + chr4_3:50866944-50866963 Msa0645530:CDS 35.0%
AACAAAAGCTATACGAACAG+AGG - chr4_3:50866994-50867013 None:intergenic 35.0%
! TCTGTTCGTATAGCTTTTGT+TGG + chr4_3:50866993-50867012 Msa0645530:CDS 35.0%
TAGATTCAGTCACATTAGTC+AGG - chr4_3:50867088-50867107 None:intergenic 35.0%
AGTAGAAAGAGAGAGTAATG+TGG + chr4_3:50867240-50867259 Msa0645530:intron 35.0%
!! CCATGGATTATTAGTTTGTC+TGG - chr4_3:50867470-50867489 None:intergenic 35.0%
CCAGACAAACTAATAATCCA+TGG + chr4_3:50867467-50867486 Msa0645530:intron 35.0%
ATTAGGATTCTACATTCGCT+TGG + chr4_3:50867495-50867514 Msa0645530:intron 35.0%
CGACCAATCGAAAAAAATCA+AGG + chr4_3:50867673-50867692 Msa0645530:CDS 35.0%
GCATTCTATGTTCTTGGATA+AGG + chr4_3:50867795-50867814 Msa0645530:intron 35.0%
GCTCAATCAGTTTGAAAACA+TGG - chr4_3:50868040-50868059 None:intergenic 35.0%
!! CTTTTCTTGATTCAGGTTTC+TGG + chr4_3:50868206-50868225 Msa0645530:intron 35.0%
TACTGAAAGAAGAAGGGAAA+TGG + chr4_3:50868282-50868301 Msa0645530:CDS 35.0%
GATACACCCATTATTATGAG+CGG + chr4_3:50868323-50868342 Msa0645530:CDS 35.0%
! GTTAGGTGAAAGTACATCTA+TGG - chr4_3:50868593-50868612 None:intergenic 35.0%
!! TCAAATAAGAAGTGTCTTGC+AGG - chr4_3:50868668-50868687 None:intergenic 35.0%
! TGTCACTTCAGGTTTATCAA+AGG - chr4_3:50868727-50868746 None:intergenic 35.0%
! AAAAAGAACTCTGTCACTTC+AGG - chr4_3:50868738-50868757 None:intergenic 35.0%
TTGTATACTTCTCCTCCTAA+TGG + chr4_3:50868781-50868800 Msa0645530:intron 35.0%
GAGAGACCAAAGAAAACTAT+AGG - chr4_3:50868812-50868831 None:intergenic 35.0%
! GGTACCTTATCTTTTAGTCT+TGG - chr4_3:50869077-50869096 None:intergenic 35.0%
!! GCTAAGAAAGGTGTTATGAT+TGG - chr4_3:50869194-50869213 None:intergenic 35.0%
! TAATGATGGAGTGCTAAGAA+AGG - chr4_3:50869206-50869225 None:intergenic 35.0%
ACATGGAATGGAAAGTTAAC+CGG + chr4_3:50869831-50869850 Msa0645530:intron 35.0%
! AAAAATGTTTCGCCTTGTTC+AGG + chr4_3:50870260-50870279 Msa0645530:intron 35.0%
AAATGGCATATTCCTGAACA+AGG - chr4_3:50870275-50870294 None:intergenic 35.0%
AGTGAAAGATGAGGATTAAC+TGG - chr4_3:50870400-50870419 None:intergenic 35.0%
AATCCTCATCTTTCACTTTC+TGG + chr4_3:50870403-50870422 Msa0645530:intron 35.0%
ATAAACTTAAGCTGTGACTC+AGG - chr4_3:50870462-50870481 None:intergenic 35.0%
ACAGCTTAAGTTTATTACGG+AGG + chr4_3:50870467-50870486 Msa0645530:CDS 35.0%
TGAAATGGACGTATGCATAT+GGG + chr4_3:50870721-50870740 Msa0645530:CDS 35.0%
TACTATTTACCTGAGCATGA+GGG + chr4_3:50870744-50870763 Msa0645530:CDS 35.0%
CAGTTCTTTGAGTATTTGCA+AGG + chr4_3:50870777-50870796 Msa0645530:CDS 35.0%
GACTTTCGTACAAAATTAGC+TGG + chr4_3:50870981-50871000 Msa0645530:CDS 35.0%
CAAAATTAGCTGGATTGACT+AGG + chr4_3:50870991-50871010 Msa0645530:CDS 35.0%
ACTACTTCGAGAATTTAGTG+AGG + chr4_3:50871114-50871133 Msa0645530:CDS 35.0%
CTACTTCGAGAATTTAGTGA+GGG + chr4_3:50871115-50871134 Msa0645530:CDS 35.0%
AATCAACGTCGATGAAAATG+TGG + chr4_3:50871347-50871366 Msa0645530:exon 35.0%
ATCAACGTCGATGAAAATGT+GGG + chr4_3:50871348-50871367 Msa0645530:exon 35.0%
! TCCGTTAGAAACACTTGTTA+CGG + chr4_3:50871374-50871393 Msa0645530:three_prime_UTR 35.0%
! ACCGTAACAAGTGTTTCTAA+CGG - chr4_3:50871378-50871397 None:intergenic 35.0%
TCTTCATCGTCTTCACATAT+TGG - chr4_3:50871455-50871474 None:intergenic 35.0%
AACAAATTCAGCTGAGTGAT+AGG - chr4_3:50871509-50871528 None:intergenic 35.0%
GTCGTGAAAGGAAAGAAGAA+AGG - chr4_3:50864177-50864196 None:intergenic 40.0%
!! AATGTGATGATGGTCGTGAA+AGG - chr4_3:50864189-50864208 None:intergenic 40.0%
! ATCTAGGGCTTGAGAAATTG+GGG - chr4_3:50864279-50864298 None:intergenic 40.0%
! GAATCTAGGGCTTGAGAAAT+TGG - chr4_3:50864281-50864300 None:intergenic 40.0%
AAGCCCTAGATTCTCGATTT+GGG + chr4_3:50864288-50864307 Msa0645530:five_prime_UTR 40.0%
GATCCCAAATCGAGAATCTA+GGG - chr4_3:50864294-50864313 None:intergenic 40.0%
TCGGAGTCCATTGAAGAATT+TGG - chr4_3:50864316-50864335 None:intergenic 40.0%
AGCATCGTGCATATCATCTT+CGG - chr4_3:50864335-50864354 None:intergenic 40.0%
GAAGATGACGATTTCTACAG+TGG + chr4_3:50864373-50864392 Msa0645530:CDS 40.0%
CGATTTCTACAGTGGTGATA+CGG + chr4_3:50864381-50864400 Msa0645530:CDS 40.0%
TGTCATCTTCCTGTCTTACT+TGG - chr4_3:50865264-50865283 None:intergenic 40.0%
TACTACTTCGTCACCACAAT+TGG + chr4_3:50865332-50865351 Msa0645530:CDS 40.0%
TGAGAGATGCTTTGTGTTGT+AGG + chr4_3:50865847-50865866 Msa0645530:intron 40.0%
TCAGTAAAGTGCATGATGCA+TGG + chr4_3:50865874-50865893 Msa0645530:CDS 40.0%
TATCTCACCTCGCTAGTATT+AGG - chr4_3:50865963-50865982 None:intergenic 40.0%
AATACTAGCGAGGTGAGATA+TGG + chr4_3:50865963-50865982 Msa0645530:intron 40.0%
!!! CTTGATTTTTTCTCCTGCTG+TGG + chr4_3:50866018-50866037 Msa0645530:intron 40.0%
TTTGAAAACTATCCTCGCTC+TGG + chr4_3:50866109-50866128 Msa0645530:CDS 40.0%
TTGAAAACTATCCTCGCTCT+GGG + chr4_3:50866110-50866129 Msa0645530:CDS 40.0%
! ATCCATACTGTTTCTCATGC+TGG + chr4_3:50866155-50866174 Msa0645530:CDS 40.0%
! TCCATACTGTTTCTCATGCT+GGG + chr4_3:50866156-50866175 Msa0645530:CDS 40.0%
CATCTCAACATCAAACATCC+AGG - chr4_3:50866471-50866490 None:intergenic 40.0%
AACTGCATATTCACAACCAG+GGG - chr4_3:50866933-50866952 None:intergenic 40.0%
GTAACTGCATATTCACAACC+AGG - chr4_3:50866935-50866954 None:intergenic 40.0%
TGTTGGAATGTAAGTTCTGC+TGG + chr4_3:50867010-50867029 Msa0645530:intron 40.0%
CAGAGTCTGAAAACATGAAC+TGG + chr4_3:50867178-50867197 Msa0645530:CDS 40.0%
TTGAAGTGGACCTTGGTTAA+AGG + chr4_3:50867355-50867374 Msa0645530:intron 40.0%
TGAAGTGGACCTTGGTTAAA+GGG + chr4_3:50867356-50867375 Msa0645530:intron 40.0%
TAGTCCAAACATAAAGGGCT+AGG - chr4_3:50867439-50867458 None:intergenic 40.0%
GAGTTTCTCTGCATTTCTGT+AGG + chr4_3:50867535-50867554 Msa0645530:intron 40.0%
TATCCACATAGGTTATGCCT+TGG + chr4_3:50868081-50868100 Msa0645530:intron 40.0%
TTATGAAGCAGCTAAGCAAG+AGG + chr4_3:50868155-50868174 Msa0645530:CDS 40.0%
TATGAAGCAGCTAAGCAAGA+GGG + chr4_3:50868156-50868175 Msa0645530:CDS 40.0%
GGAAATGGCGAAGAATTCAT+TGG + chr4_3:50868297-50868316 Msa0645530:CDS 40.0%
! GATACATACAGATTGGTTGC+TGG - chr4_3:50868353-50868372 None:intergenic 40.0%
TTGTTCGGTAGTCATGTCTT+AGG + chr4_3:50868386-50868405 Msa0645530:intron 40.0%
TGTTCGGTAGTCATGTCTTA+GGG + chr4_3:50868387-50868406 Msa0645530:intron 40.0%
!! AATAAGAAGTGTCTTGCAGG+AGG - chr4_3:50868665-50868684 None:intergenic 40.0%
CAAAGGAATAACCAGTCAAG+AGG - chr4_3:50868710-50868729 None:intergenic 40.0%
AAACTATAGGCCAGACCATT+AGG - chr4_3:50868799-50868818 None:intergenic 40.0%
! GTCTGGCCTATAGTTTTCTT+TGG + chr4_3:50868803-50868822 Msa0645530:intron 40.0%
AAGCACCACTCAAGTTCAAA+AGG - chr4_3:50868965-50868984 None:intergenic 40.0%
TTTGTTTCAACCTCCCTATG+TGG + chr4_3:50869015-50869034 Msa0645530:intron 40.0%
! ACCTCCCTATGTGGATTATA+TGG + chr4_3:50869024-50869043 Msa0645530:intron 40.0%
ACCATATAATCCACATAGGG+AGG - chr4_3:50869028-50869047 None:intergenic 40.0%
CAGCTTCAACATTCCTCTAA+GGG - chr4_3:50869692-50869711 None:intergenic 40.0%
ACAGCTTCAACATTCCTCTA+AGG - chr4_3:50869693-50869712 None:intergenic 40.0%
AGAGGAATGTTGAAGCTGTT+GGG + chr4_3:50869694-50869713 Msa0645530:intron 40.0%
! TTTTTCTCGTCTCACAGTCA+AGG + chr4_3:50870049-50870068 Msa0645530:intron 40.0%
CATCAACGACAGATTATGCA+AGG - chr4_3:50870356-50870375 None:intergenic 40.0%
AATCTGTCGTTGATGCTTCT+AGG + chr4_3:50870361-50870380 Msa0645530:intron 40.0%
ATCTGTCGTTGATGCTTCTA+GGG + chr4_3:50870362-50870381 Msa0645530:intron 40.0%
TTAAGTTTATTACGGAGGCC+TGG + chr4_3:50870472-50870491 Msa0645530:CDS 40.0%
TCTTCCAGATAGTTGAGTGT+AGG + chr4_3:50870691-50870710 Msa0645530:intron 40.0%
CTGAAATGGACGTATGCATA+TGG + chr4_3:50870720-50870739 Msa0645530:CDS 40.0%
GTACTATTTACCTGAGCATG+AGG + chr4_3:50870743-50870762 Msa0645530:CDS 40.0%
!!! TTTTCAGGTGAAGCAGAATC+TGG + chr4_3:50870879-50870898 Msa0645530:intron 40.0%
!! TTAGTGAGGGCTTTAGAGAA+TGG + chr4_3:50871128-50871147 Msa0645530:CDS 40.0%
CTATCCGATGTAGATGCTAA+CGG + chr4_3:50871152-50871171 Msa0645530:CDS 40.0%
TATCCGATGTAGATGCTAAC+GGG + chr4_3:50871153-50871172 Msa0645530:CDS 40.0%
GAACTTCTGATGATAGTCAC+TGG + chr4_3:50871267-50871286 Msa0645530:CDS 40.0%
TTGATTGCAAATCTGGCATG+TGG - chr4_3:50871333-50871352 None:intergenic 40.0%
! ATCGACGTTGATTGCAAATC+TGG - chr4_3:50871340-50871359 None:intergenic 40.0%
GGGTTCTTCTCATTATATGC+TGG + chr4_3:50871427-50871446 Msa0645530:three_prime_UTR 40.0%
AATTCAGCTGAGTGATAGGA+GGG - chr4_3:50871505-50871524 None:intergenic 40.0%
AAATTCAGCTGAGTGATAGG+AGG - chr4_3:50871506-50871525 None:intergenic 40.0%
CAAGCCCTAGATTCTCGATT+TGG + chr4_3:50864287-50864306 Msa0645530:five_prime_UTR 45.0%
GGATCCCAAATCGAGAATCT+AGG - chr4_3:50864295-50864314 None:intergenic 45.0%
TATGCACGATGCTCACGATA+TGG + chr4_3:50864342-50864361 Msa0645530:CDS 45.0%
TACAGTGGTGATACGGAAGA+AGG + chr4_3:50864388-50864407 Msa0645530:CDS 45.0%
TGATTAGTGGTGGTTGGATG+AGG + chr4_3:50864943-50864962 Msa0645530:intron 45.0%
GTATTAGGATGCTGGACAAC+TGG - chr4_3:50865948-50865967 None:intergenic 45.0%
TAGCGAGGTGAGATATGGAT+GGG + chr4_3:50865968-50865987 Msa0645530:intron 45.0%
AACAGATGCCACATGTAAGC+TGG - chr4_3:50866090-50866109 None:intergenic 45.0%
TCCCAGCATGAGAAACAGTA+TGG - chr4_3:50866160-50866179 None:intergenic 45.0%
! TACTGTTTCTCATGCTGGGA+AGG + chr4_3:50866160-50866179 Msa0645530:CDS 45.0%
! TTTGTCCTTTTCGGCATGCT+AGG + chr4_3:50866417-50866436 Msa0645530:intron 45.0%
TGTATCCTAGCATGCCGAAA+AGG - chr4_3:50866425-50866444 None:intergenic 45.0%
ATCAGCACGTCCATCAATGA+TGG + chr4_3:50866444-50866463 Msa0645530:CDS 45.0%
ACATCCAGGACCATCATTGA+TGG - chr4_3:50866457-50866476 None:intergenic 45.0%
CTACATGGATTCGAATTGGC+AGG - chr4_3:50866643-50866662 None:intergenic 45.0%
!!! GCAGTTACTTTTGATGCTGG+AGG + chr4_3:50866947-50866966 Msa0645530:CDS 45.0%
!!! GTTACTTTTGATGCTGGAGG+TGG + chr4_3:50866950-50866969 Msa0645530:CDS 45.0%
!! GCTTAAGTTGAAGTGGACCT+TGG + chr4_3:50867348-50867367 Msa0645530:intron 45.0%
GAAGTGGACCTTGGTTAAAG+GGG + chr4_3:50867357-50867376 Msa0645530:intron 45.0%
GATGCCTAGCCCTTTATGTT+TGG + chr4_3:50867432-50867451 Msa0645530:intron 45.0%
! TCGATTGGTCGCTTGCATTT+GGG - chr4_3:50867664-50867683 None:intergenic 45.0%
! TTCGATTGGTCGCTTGCATT+TGG - chr4_3:50867665-50867684 None:intergenic 45.0%
! ATAGGTTATGCCTTGGTGCA+TGG + chr4_3:50868088-50868107 Msa0645530:intron 45.0%
TCAGACCATGGTGAAAGAAC+TGG + chr4_3:50868111-50868130 Msa0645530:CDS 45.0%
AACCACCAGTTCTTTCACCA+TGG - chr4_3:50868119-50868138 None:intergenic 45.0%
ACACCCATTATTATGAGCGG+TGG + chr4_3:50868326-50868345 Msa0645530:CDS 45.0%
CACCCATTATTATGAGCGGT+GGG + chr4_3:50868327-50868346 Msa0645530:CDS 45.0%
TACTTCTCCTCCTAATGGTC+TGG + chr4_3:50868786-50868805 Msa0645530:intron 45.0%
TGGTCTCTCTTAAAAGGTCC+AGG + chr4_3:50868823-50868842 Msa0645530:intron 45.0%
GGTCTCTCTTAAAAGGTCCA+GGG + chr4_3:50868824-50868843 Msa0645530:intron 45.0%
! ATAAGGTACCCCAAGTCTCT+TGG + chr4_3:50869087-50869106 Msa0645530:intron 45.0%
! TAAGGTACCCCAAGTCTCTT+GGG + chr4_3:50869088-50869107 Msa0645530:intron 45.0%
ATCTGTTCTGTGTCATCCTG+TGG + chr4_3:50869592-50869611 Msa0645530:intron 45.0%
! CAACATTCCTCTAAGGGAGT+TGG - chr4_3:50869686-50869705 None:intergenic 45.0%
CAGCTTCAACATTCCTCTGA+GGG - chr4_3:50869717-50869736 None:intergenic 45.0%
ACAGCTTCAACATTCCTCTG+AGG - chr4_3:50869718-50869737 None:intergenic 45.0%
CAGAGGAATGTTGAAGCTGT+TGG + chr4_3:50869718-50869737 Msa0645530:intron 45.0%
TTAAAAGGCCAGGAGAGAGA+TGG - chr4_3:50870136-50870155 None:intergenic 45.0%
CTGCCAGAAAGTGAAAGATG+AGG - chr4_3:50870409-50870428 None:intergenic 45.0%
ACTTAAGCTGTGACTCAGGT+TGG - chr4_3:50870458-50870477 None:intergenic 45.0%
CAAATCATTTACCTGCAGCC+AGG - chr4_3:50870493-50870512 None:intergenic 45.0%
CTCTCCTACACTCAACTATC+TGG - chr4_3:50870698-50870717 None:intergenic 45.0%
!! AGTGTAGGAGAGTGCTGAAA+TGG + chr4_3:50870706-50870725 Msa0645530:CDS 45.0%
!!! TTTTTTGCACCCTCATGCTC+AGG - chr4_3:50870756-50870775 None:intergenic 45.0%
ATCCGATGTAGATGCTAACG+GGG + chr4_3:50871154-50871173 Msa0645530:CDS 45.0%
ACGAGCTCAAAAAATGCTGC+AGG + chr4_3:50871194-50871213 Msa0645530:CDS 45.0%
CGAGCTCAAAAAATGCTGCA+GGG + chr4_3:50871195-50871214 Msa0645530:CDS 45.0%
GGCAGATTTGACATTCACAG+AGG - chr4_3:50871309-50871328 None:intergenic 45.0%
ATTGCAAATCTGGCATGTGG+TGG - chr4_3:50871330-50871349 None:intergenic 45.0%
AAGAACCCAATCTCAGCCTT+TGG - chr4_3:50871415-50871434 None:intergenic 45.0%
!!! CATTTTTATTTTATTTTTTT+TGG + chr4_3:50864205-50864224 Msa0645530:five_prime_UTR 5.0%
!! TTAAAAATATTACAAATAAT+TGG + chr4_3:50869567-50869586 Msa0645530:intron 5.0%
!! ATAAAATAAAATACAAAAAA+AGG - chr4_3:50871614-50871633 None:intergenic 5.0%
! TGATACGGAAGAAGGTGCGA+TGG + chr4_3:50864396-50864415 Msa0645530:CDS 50.0%
TGAAGAGCGAGTCCGAAAAG+CGG + chr4_3:50865905-50865924 Msa0645530:CDS 50.0%
!! CCAACAAGCCAACCGCTTTT+CGG - chr4_3:50865920-50865939 None:intergenic 50.0%
CCTCGCTAGTATTAGGATGC+TGG - chr4_3:50865956-50865975 None:intergenic 50.0%
CCAGCATCCTAATACTAGCG+AGG + chr4_3:50865953-50865972 Msa0645530:CDS 50.0%
CTAGCGAGGTGAGATATGGA+TGG + chr4_3:50865967-50865986 Msa0645530:intron 50.0%
GAGAATATAGCTCCCACAGC+AGG - chr4_3:50866034-50866053 None:intergenic 50.0%
!! AACTATCCTCGCTCTGGGAT+TGG + chr4_3:50866115-50866134 Msa0645530:CDS 50.0%
GGGATTGGAATGGCTTCTTG+TGG + chr4_3:50866130-50866149 Msa0645530:CDS 50.0%
ACGTCCATCAATGATGGTCC+TGG + chr4_3:50866450-50866469 Msa0645530:CDS 50.0%
AGATGTCCTGAACCCACTTG+TGG + chr4_3:50866486-50866505 Msa0645530:CDS 50.0%
ACTGAATCTACAGTGCACCG+AGG + chr4_3:50867098-50867117 Msa0645530:intron 50.0%
ACTGTGGCACTGTGGTAAAG+TGG + chr4_3:50867139-50867158 Msa0645530:CDS 50.0%
GACTCACACCCCTTTAACCA+AGG - chr4_3:50867368-50867387 None:intergenic 50.0%
GCACCAAGGCATAACCTATG+TGG - chr4_3:50868087-50868106 None:intergenic 50.0%
GACCATGGTGAAAGAACTGG+TGG + chr4_3:50868114-50868133 Msa0645530:CDS 50.0%
AAGCAAGAGGGAGTGGTAAG+AGG + chr4_3:50868168-50868187 Msa0645530:intron 50.0%
GGCCCACCGCTCATAATAAT+GGG - chr4_3:50868332-50868351 None:intergenic 50.0%
TGGCCCACCGCTCATAATAA+TGG - chr4_3:50868333-50868352 None:intergenic 50.0%
!! TCTTGCAGGAGGAGCATTGT+TGG - chr4_3:50868654-50868673 None:intergenic 50.0%
!! CCAGTCAAGAGGAGTACTCT+TGG - chr4_3:50868699-50868718 None:intergenic 50.0%
!! CCAAGAGTACTCCTCTTGAC+TGG + chr4_3:50868696-50868715 Msa0645530:intron 50.0%
CTATAGGCCAGACCATTAGG+AGG - chr4_3:50868796-50868815 None:intergenic 50.0%
! AAGGTCCAGGGTTCAAGTTC+TGG + chr4_3:50868836-50868855 Msa0645530:intron 50.0%
TCAAGGACCAACTCCCTTAG+AGG + chr4_3:50869676-50869695 Msa0645530:intron 50.0%
TGTTGAAGCTGTTCCCTCAG+AGG + chr4_3:50869701-50869720 Msa0645530:intron 50.0%
GTTGAAGCTGTTGGGTGAGT+TGG + chr4_3:50869727-50869746 Msa0645530:intron 50.0%
AGGTGAAGCAGAATCTGGTC+TGG + chr4_3:50870884-50870903 Msa0645530:intron 50.0%
! CAGCAATTCCTCAGTGCTGA+AGG + chr4_3:50870939-50870958 Msa0645530:CDS 50.0%
!! TAGATTGGCCTTCAGCACTG+AGG - chr4_3:50870950-50870969 None:intergenic 50.0%
AGCCCCGTTAGCATCTACAT+CGG - chr4_3:50871159-50871178 None:intergenic 50.0%
! TGAGCTCGTTGCTTTGCTGA+AGG - chr4_3:50871183-50871202 None:intergenic 50.0%
AAATGCTGCAGGGAGCAGTA+AGG + chr4_3:50871205-50871224 Msa0645530:CDS 50.0%
AATGCTGCAGGGAGCAGTAA+GGG + chr4_3:50871206-50871225 Msa0645530:CDS 50.0%
! GAAACACTTGTTACGGTGCG+TGG + chr4_3:50871381-50871400 Msa0645530:three_prime_UTR 50.0%
! AATCTCAGCCTTTGGTGCAG+TGG - chr4_3:50871407-50871426 None:intergenic 50.0%
ACTGCACCAAAGGCTGAGAT+TGG + chr4_3:50871406-50871425 Msa0645530:three_prime_UTR 50.0%
CTGCACCAAAGGCTGAGATT+GGG + chr4_3:50871407-50871426 Msa0645530:three_prime_UTR 50.0%
GATTGAGTCTCGTCGACCTG+AGG + chr4_3:50864474-50864493 Msa0645530:CDS 55.0%
!! CCGAAAAGCGGTTGGCTTGT+TGG + chr4_3:50865917-50865936 Msa0645530:CDS 55.0%
TGCTGTGGCCAGCTTACATG+TGG + chr4_3:50866079-50866098 Msa0645530:intron 55.0%
!! TCCTCGCTCTGGGATTGGAA+TGG + chr4_3:50866120-50866139 Msa0645530:CDS 55.0%
CCAATAGCAGCGCCACAAGT+GGG - chr4_3:50866501-50866520 None:intergenic 55.0%
ACCAATAGCAGCGCCACAAG+TGG - chr4_3:50866502-50866521 None:intergenic 55.0%
GCATATTCACAACCAGGGGC+AGG - chr4_3:50866929-50866948 None:intergenic 55.0%
GAATCTACAGTGCACCGAGG+AGG + chr4_3:50867101-50867120 Msa0645530:intron 55.0%
! GGTCGCTTGCATTTGGGACA+TGG - chr4_3:50867658-50867677 None:intergenic 55.0%
CATGGTCTGACCATGCACCA+AGG - chr4_3:50868101-50868120 None:intergenic 55.0%
! CTTGGTGCATGGTCAGACCA+TGG + chr4_3:50868099-50868118 Msa0645530:CDS 55.0%
AGCAGCTAAGCAAGAGGGAG+TGG + chr4_3:50868161-50868180 Msa0645530:CDS 55.0%
CCTTGCCAGAACTTGAACCC+TGG - chr4_3:50868844-50868863 None:intergenic 55.0%
! CCAGGGTTCAAGTTCTGGCA+AGG + chr4_3:50868841-50868860 Msa0645530:intron 55.0%
AGGTGTGGCCCAAGAGACTT+GGG - chr4_3:50869099-50869118 None:intergenic 55.0%
GTACTCAGCCATCTCTCTCC+TGG + chr4_3:50870125-50870144 Msa0645530:intron 55.0%
ATGCTGCAGGGAGCAGTAAG+GGG + chr4_3:50871207-50871226 Msa0645530:CDS 55.0%
GAGCGAGTCCGAAAAGCGGT+TGG + chr4_3:50865909-50865928 Msa0645530:CDS 60.0%
GCCATTCCAATCCCAGAGCG+AGG - chr4_3:50866124-50866143 None:intergenic 60.0%
CCCACTTGTGGCGCTGCTAT+TGG + chr4_3:50866498-50866517 Msa0645530:CDS 60.0%
TCAAAGTGGTGTCCTGCCCC+TGG + chr4_3:50866914-50866933 Msa0645530:CDS 60.0%
CACTGGACGATGAGCCTCCT+CGG - chr4_3:50867118-50867137 None:intergenic 60.0%
!! GCTCATCGTCCAGTGGACTG+TGG + chr4_3:50867123-50867142 Msa0645530:CDS 60.0%
!! TCCAGTGGACTGTGGCACTG+TGG + chr4_3:50867131-50867150 Msa0645530:CDS 60.0%
ACCACAGTGCCACAGTCCAC+TGG - chr4_3:50867135-50867154 None:intergenic 60.0%
GGTGTGGCCCAAGAGACTTG+GGG - chr4_3:50869098-50869117 None:intergenic 60.0%
GAGGTGTGGCCCAAGAGACT+TGG - chr4_3:50869100-50869119 None:intergenic 60.0%
TATTACGGAGGCCTGGCTGC+AGG + chr4_3:50870479-50870498 Msa0645530:CDS 60.0%
GGAGCAGTAAGGGGAGAGCT+GGG + chr4_3:50871216-50871235 Msa0645530:CDS 60.0%
AGTAAGGGGAGAGCTGGGAG+AGG + chr4_3:50871221-50871240 Msa0645530:CDS 60.0%
GGGAGAGCTGGGAGAGGAAA+GGG + chr4_3:50871227-50871246 Msa0645530:CDS 60.0%
! GCAGCGCCACAAGTGGGTTC+AGG - chr4_3:50866495-50866514 None:intergenic 65.0%
CGAGGAGGCTCATCGTCCAG+TGG + chr4_3:50867116-50867135 Msa0645530:CDS 65.0%
GGGAGCAGTAAGGGGAGAGC+TGG + chr4_3:50871215-50871234 Msa0645530:CDS 65.0%
GGGGAGAGCTGGGAGAGGAA+AGG + chr4_3:50871226-50871245 Msa0645530:CDS 65.0%
GTGCGTGGCCACTGCACCAA+AGG + chr4_3:50871396-50871415 Msa0645530:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 50864148 50871777 50864148 ID=Msa0645530;Name=Msa0645530
chr4_3 mRNA 50864148 50871777 50864148 ID=Msa0645530-mRNA-1;Parent=Msa0645530;Name=Msa0645530-mRNA-1;_AED=0.06;_eAED=0.06;_QI=177|1|1|1|0.85|0.93|15|416|584
chr4_3 exon 50864148 50864495 50864148 ID=Msa0645530-mRNA-1:exon:12110;Parent=Msa0645530-mRNA-1
chr4_3 exon 50865229 50865353 50865229 ID=Msa0645530-mRNA-1:exon:12111;Parent=Msa0645530-mRNA-1
chr4_3 exon 50865869 50865974 50865869 ID=Msa0645530-mRNA-1:exon:12112;Parent=Msa0645530-mRNA-1
chr4_3 exon 50866091 50866181 50866091 ID=Msa0645530-mRNA-1:exon:12113;Parent=Msa0645530-mRNA-1
chr4_3 exon 50866439 50866611 50866439 ID=Msa0645530-mRNA-1:exon:12114;Parent=Msa0645530-mRNA-1
chr4_3 exon 50866914 50867018 50866914 ID=Msa0645530-mRNA-1:exon:12115;Parent=Msa0645530-mRNA-1
chr4_3 exon 50867111 50867199 50867111 ID=Msa0645530-mRNA-1:exon:12116;Parent=Msa0645530-mRNA-1
chr4_3 exon 50867636 50867743 50867636 ID=Msa0645530-mRNA-1:exon:12117;Parent=Msa0645530-mRNA-1
chr4_3 exon 50868092 50868182 50868092 ID=Msa0645530-mRNA-1:exon:12118;Parent=Msa0645530-mRNA-1
chr4_3 exon 50868274 50868363 50868274 ID=Msa0645530-mRNA-1:exon:12119;Parent=Msa0645530-mRNA-1
chr4_3 exon 50870066 50870113 50870066 ID=Msa0645530-mRNA-1:exon:12120;Parent=Msa0645530-mRNA-1
chr4_3 exon 50870429 50870500 50870429 ID=Msa0645530-mRNA-1:exon:12121;Parent=Msa0645530-mRNA-1
chr4_3 exon 50870699 50870798 50870699 ID=Msa0645530-mRNA-1:exon:12122;Parent=Msa0645530-mRNA-1
chr4_3 exon 50870886 50871012 50870886 ID=Msa0645530-mRNA-1:exon:12123;Parent=Msa0645530-mRNA-1
chr4_3 exon 50871103 50871777 50871103 ID=Msa0645530-mRNA-1:exon:12124;Parent=Msa0645530-mRNA-1
chr4_3 five_prime_UTR 50864148 50864324 50864148 ID=Msa0645530-mRNA-1:five_prime_utr;Parent=Msa0645530-mRNA-1
chr4_3 CDS 50864325 50864495 50864325 ID=Msa0645530-mRNA-1:cds;Parent=Msa0645530-mRNA-1
chr4_3 CDS 50865229 50865353 50865229 ID=Msa0645530-mRNA-1:cds;Parent=Msa0645530-mRNA-1
chr4_3 CDS 50865869 50865974 50865869 ID=Msa0645530-mRNA-1:cds;Parent=Msa0645530-mRNA-1
chr4_3 CDS 50866091 50866181 50866091 ID=Msa0645530-mRNA-1:cds;Parent=Msa0645530-mRNA-1
chr4_3 CDS 50866439 50866611 50866439 ID=Msa0645530-mRNA-1:cds;Parent=Msa0645530-mRNA-1
chr4_3 CDS 50866914 50867018 50866914 ID=Msa0645530-mRNA-1:cds;Parent=Msa0645530-mRNA-1
chr4_3 CDS 50867111 50867199 50867111 ID=Msa0645530-mRNA-1:cds;Parent=Msa0645530-mRNA-1
chr4_3 CDS 50867636 50867743 50867636 ID=Msa0645530-mRNA-1:cds;Parent=Msa0645530-mRNA-1
chr4_3 CDS 50868092 50868182 50868092 ID=Msa0645530-mRNA-1:cds;Parent=Msa0645530-mRNA-1
chr4_3 CDS 50868274 50868363 50868274 ID=Msa0645530-mRNA-1:cds;Parent=Msa0645530-mRNA-1
chr4_3 CDS 50870066 50870113 50870066 ID=Msa0645530-mRNA-1:cds;Parent=Msa0645530-mRNA-1
chr4_3 CDS 50870429 50870500 50870429 ID=Msa0645530-mRNA-1:cds;Parent=Msa0645530-mRNA-1
chr4_3 CDS 50870699 50870798 50870699 ID=Msa0645530-mRNA-1:cds;Parent=Msa0645530-mRNA-1
chr4_3 CDS 50870886 50871012 50870886 ID=Msa0645530-mRNA-1:cds;Parent=Msa0645530-mRNA-1
chr4_3 CDS 50871103 50871361 50871103 ID=Msa0645530-mRNA-1:cds;Parent=Msa0645530-mRNA-1
chr4_3 three_prime_UTR 50871362 50871777 50871362 ID=Msa0645530-mRNA-1:three_prime_utr;Parent=Msa0645530-mRNA-1
Gene Sequence

>Msa0645530

ATGGACTCCGAAGATGATATGCACGATGCTCACGATATGGAGTCCCTTGAAGATGACGATTTCTACAGTGGTGATACGGAAGAAGGTGCGATGGATTATTATAGTGATTATGATGATGATGCTGGTGATTACTTTGATGATGCTGATAAGATTGAGTCTCGTCGACCTGAGCAAAATTTTACCATATTGAAGGAATCTGATATCCAAGTAAGACAGGAAGATGACATTGATACAGTTGCAGCTGTTCTTTCTGTATCAAAAGTTGCTGCAAGCATACTACTTCGTCACCACAATTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGAGCGAGTCCGAAAAGCGGTTGGCTTGTTGGAGAAGCCAGTTGTCCAGCATCCTAATACTAGCGAGCTTACATGTGGCATCTGTTTTGAAAACTATCCTCGCTCTGGGATTGGAATGGCTTCTTGTGGTCATCCATACTGTTTCTCATGCTGGGAAGGATACATCAGCACGTCCATCAATGATGGTCCTGGATGTTTGATGTTGAGATGTCCTGAACCCACTTGTGGCGCTGCTATTGGTCAAGATATGATTGATTCATTAGCATGTAATGAAGATAAAGAAAAGTATGCCCGTTACCTTCGTAGATCTTATATCGAAGACAATAAAAAGTCAAAGTGGTGTCCTGCCCCTGGTTGTGAATATGCAGTTACTTTTGATGCTGGAGGTGGAAATTATGATGTCTCTTGCCTCTGTTCGTATAGCTTTTGTTGGAATTGCACCGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTGGTAAAGTGGATTATGAAAAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAATGCAAGCGACCAATCGAAAAAAATCAAGGATGCATGCACATCACGTGCACTCCACCCTGTAAATTTGAATTTTGCTGGTTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAGCAAGAGGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCGAAGAATTCATTGGAGAGATACACCCATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAGAAAGCTCTTGCAGATCTAGAACAGATGCAAAATGTTCATATTGAGAAGCTTAGTGACACGCAGTGCCAACCTGAGTCACAGCTTAAGTTTATTACGGAGGCCTGGCTGCAGATAGTTGAGTGTAGGAGAGTGCTGAAATGGACGTATGCATATGGGTACTATTTACCTGAGCATGAGGGTGCAAAAAAACAGTTCTTTGAGTATTTGCAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCTGAAAAAGAGCTACAGCAATTCCTCAGTGCTGAAGGCCAATCTAAAGAATTCAATGACTTTCGTACAAAATTAGCTGGATTGACTAGTGTGACTAAAAACTACTTCGAGAATTTAGTGAGGGCTTTAGAGAATGGTCTATCCGATGTAGATGCTAACGGGGCTTCCTTCAGCAAAGCAACGAGCTCAAAAAATGCTGCAGGGAGCAGTAAGGGGAGAGCTGGGAGAGGAAAGGGAGCTTTGCGAACAAACAGAACTTCTGATGATAGTCACTGGAGCTGTGAACATTGTACCTCTGTGAATGTCAAATCTGCCACCACATGCCAGATTTGCAATCAACGTCGATGA
Protein sequence

>Msa0645530

MDSEDDMHDAHDMESLEDDDFYSGDTEEGAMDYYSDYDDDAGDYFDDADKIESRRPEQNFTILKESDIQVRQEDDIDTVAAVLSVSKVAASILLRHHNWSVSKVHDAWFADEERVRKAVGLLEKPVVQHPNTSELTCGICFENYPRSGIGMASCGHPYCFSCWEGYISTSINDGPGCLMLRCPEPTCGAAIGQDMIDSLACNEDKEKYARYLRRSYIEDNKKSKWCPAPGCEYAVTFDAGGGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVVKWIMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLEQMQNVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEGAKKQFFEYLQGEAESGLERLHQCAEKELQQFLSAEGQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDANGASFSKATSSKNAAGSSKGRAGRGKGALRTNRTSDDSHWSCEHCTSVNVKSATTCQICNQRR*