Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799940 | sp|Q9FH40|TA14B_ARATH | 66.284 | 261 | 80 | 2 | 10 | 270 | 9 | 261 | 4.97e-128 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799940 | G7JW72 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 542 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048550 | Msa0799940 | 0.903256 | 4.185858e-79 | -8.615850e-47 |
| Msa0754380 | Msa0799940 | 0.896263 | 4.361342e-76 | -8.615850e-47 |
| Msa0799940 | Msa1384190 | 0.900376 | 7.797918e-78 | -8.615850e-47 |
| Msa0799940 | Msa1429120 | 0.883359 | 4.797972e-71 | -8.615850e-47 |
| Msa0128050 | Msa0799940 | 0.821209 | 4.559712e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799940 | MtrunA17_Chr5g0405361 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 542 |
| Msa0799940 | MtrunA17_Chr4g0036171 | 71.308 | 237 | 66 | 1 | 36 | 272 | 32 | 266 | 2.68e-128 | 365 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799940 | AT5G45600.2 | 66.667 | 261 | 78 | 2 | 10 | 270 | 9 | 260 | 4.72e-129 | 367 |
| Msa0799940 | AT5G45600.1 | 66.284 | 261 | 80 | 2 | 10 | 270 | 9 | 261 | 5.05e-129 | 367 |
| Msa0799940 | AT2G18000.2 | 63.203 | 231 | 83 | 1 | 46 | 274 | 33 | 263 | 2.85e-108 | 314 |
| Msa0799940 | AT2G18000.1 | 67.879 | 165 | 51 | 1 | 46 | 208 | 33 | 197 | 7.70e-83 | 248 |
Find 83 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAGAAATTGGGGATTT+AGG | 0.119714 | 5_3:-13375224 | None:intergenic |
| ATTTGTGTTCCTATTGTTTA+TGG | 0.155857 | 5_3:+13375505 | Msa0799940:CDS |
| GGATTTAGGGTTTAGGGTTT+TGG | 0.171824 | 5_3:-13375210 | None:intergenic |
| TTGAGAAATGAAGAAGAAAT+TGG | 0.193899 | 5_3:-13375233 | None:intergenic |
| TATCACCATATAAAATATTT+TGG | 0.199066 | 5_3:-13377623 | None:intergenic |
| AAGAAGAAATTGGGGATTTA+GGG | 0.234618 | 5_3:-13375223 | None:intergenic |
| ATCTTCCCCGTAGATTGTTT+TGG | 0.301941 | 5_3:+13377526 | Msa0799940:three_prime_UTR |
| AAATTGGGGATTTAGGGTTT+AGG | 0.308547 | 5_3:-13375217 | None:intergenic |
| CTAGGTCTCAATCTCATAAA+TGG | 0.308690 | 5_3:+13375847 | Msa0799940:intron |
| CTTCCAAGTTTGACCCTAAA+GGG | 0.311001 | 5_3:-13377467 | None:intergenic |
| TGAGAAATGAAGAAGAAATT+GGG | 0.319935 | 5_3:-13375232 | None:intergenic |
| CTCTGAAGATTCCGACAAAA+AGG | 0.323148 | 5_3:+13375372 | Msa0799940:CDS |
| GTCAAAACAGCCATCTGATT+AGG | 0.323162 | 5_3:+13377398 | Msa0799940:CDS |
| TGCGGACCAGATTCATCTTC+AGG | 0.323612 | 5_3:-13376185 | None:intergenic |
| TTTGTGTTCCTATTGTTTAT+GGG | 0.329826 | 5_3:+13375506 | Msa0799940:CDS |
| AATTGGGGATTTAGGGTTTA+GGG | 0.342091 | 5_3:-13375216 | None:intergenic |
| AGAAGAATAGACATGGTTCT+TGG | 0.350504 | 5_3:+13377590 | Msa0799940:three_prime_UTR |
| GCGAAGACAATTAACTTTGT+TGG | 0.360143 | 5_3:+13377362 | Msa0799940:CDS |
| TGAGATATCTGAATGTGGTT+GGG | 0.370519 | 5_3:+13375986 | Msa0799940:CDS |
| TGTTGTTGTTCCTAAGCTTC+CGG | 0.377160 | 5_3:+13376304 | Msa0799940:CDS |
| CCTCTCCCCTTGTCATTCAT+AGG | 0.378226 | 5_3:-13376464 | None:intergenic |
| GTGATTCAACAACTCTTGTT+GGG | 0.380529 | 5_3:-13375956 | None:intergenic |
| CGTCTGCCTCTGAGAAGTTC+AGG | 0.383496 | 5_3:-13376520 | None:intergenic |
| CTGTGTAGAAGCCAGTTGTT+TGG | 0.386903 | 5_3:+13377561 | Msa0799940:three_prime_UTR |
| TCAAAACAGCCATCTGATTA+GGG | 0.394516 | 5_3:+13377399 | Msa0799940:CDS |
| TCTTCCAAGTTTGACCCTAA+AGG | 0.402244 | 5_3:-13377468 | None:intergenic |
| GGTGATTCAACAACTCTTGT+TGG | 0.404893 | 5_3:-13375957 | None:intergenic |
| ATCTTAGCGCTGTTGTTAAG+AGG | 0.408823 | 5_3:+13375901 | Msa0799940:CDS |
| CTTCTAAACCTCCAAACAAC+TGG | 0.411904 | 5_3:-13377572 | None:intergenic |
| GCAATAGTCCCATAAACAAT+AGG | 0.416181 | 5_3:-13375514 | None:intergenic |
| AGAAAAGCCTCAGAAGGTTC+AGG | 0.431687 | 5_3:-13376257 | None:intergenic |
| ACTAGCGGCCGCTCGCCAAC+AGG | 0.433354 | 5_3:+13376553 | Msa0799940:CDS |
| GATTGTGATCAAGAGGGTTA+AGG | 0.439714 | 5_3:+13375474 | Msa0799940:intron |
| TGGCTTGAATTTACCAAGCC+CGG | 0.441883 | 5_3:+13376328 | Msa0799940:CDS |
| CCACATTCAGATATCTCAAA+AGG | 0.442736 | 5_3:-13375981 | None:intergenic |
| AATATATCCAAAACAATCTA+CGG | 0.450829 | 5_3:-13377533 | None:intergenic |
| AAAAGGAATGTACCCGGGCT+TGG | 0.452777 | 5_3:-13376341 | None:intergenic |
| ACGTTTGAGATTGAGACATT+TGG | 0.453924 | 5_3:-13375264 | None:intergenic |
| TTGTAAGATTCAATGACAAC+AGG | 0.457288 | 5_3:-13376221 | None:intergenic |
| CACATTCAGATATCTCAAAA+GGG | 0.460624 | 5_3:-13375980 | None:intergenic |
| GTGGCTCAGTGGATGATCTT+TGG | 0.461147 | 5_3:-13376492 | None:intergenic |
| CTTGTTGGGTTGTTGAAACT+AGG | 0.464463 | 5_3:-13375942 | None:intergenic |
| TTCAAGCCATCCGGAAGCTT+AGG | 0.466794 | 5_3:-13376314 | None:intergenic |
| TGTAGAAGCCAGTTGTTTGG+AGG | 0.475320 | 5_3:+13377564 | Msa0799940:three_prime_UTR |
| TTGTATCCTGAAGATGAATC+TGG | 0.476586 | 5_3:+13376179 | Msa0799940:CDS |
| TTGAGATATCTGAATGTGGT+TGG | 0.489346 | 5_3:+13375985 | Msa0799940:CDS |
| ATATATCCAAAACAATCTAC+GGG | 0.499169 | 5_3:-13377532 | None:intergenic |
| GAGATATCTGAATGTGGTTG+GGG | 0.508033 | 5_3:+13375987 | Msa0799940:CDS |
| TCATCTTGCTGTCTCTTGAG+TGG | 0.510191 | 5_3:-13375289 | None:intergenic |
| TTTCCCTTTAGGGTCAAACT+TGG | 0.511163 | 5_3:+13377464 | Msa0799940:three_prime_UTR |
| GAGAAATGAAGAAGAAATTG+GGG | 0.514160 | 5_3:-13375231 | None:intergenic |
| AGACAATTAACTTTGTTGGA+AGG | 0.518481 | 5_3:+13377366 | Msa0799940:CDS |
| CTTGGTAAATTCAAGCCATC+CGG | 0.524197 | 5_3:-13376323 | None:intergenic |
| AAGATCATCCACTGAGCCAC+TGG | 0.526941 | 5_3:+13376495 | Msa0799940:CDS |
| AGCTTAGGAACAACAACAGC+AGG | 0.539488 | 5_3:-13376299 | None:intergenic |
| TCTTAGCGCTGTTGTTAAGA+GGG | 0.547459 | 5_3:+13375902 | Msa0799940:CDS |
| CCTATGAATGACAAGGGGAG+AGG | 0.556014 | 5_3:+13376464 | Msa0799940:CDS |
| TGTGCGTGGAGCTTCTAATG+AGG | 0.563078 | 5_3:+13375878 | Msa0799940:CDS |
| TTGTCATTCATAGGTTCGAC+CGG | 0.563658 | 5_3:-13376455 | None:intergenic |
| GGCTTGAATTTACCAAGCCC+GGG | 0.565243 | 5_3:+13376329 | Msa0799940:CDS |
| CATGTACATCCCTAATCAGA+TGG | 0.565284 | 5_3:-13377408 | None:intergenic |
| TGGTTCAGATTGTGATCAAG+AGG | 0.565288 | 5_3:+13375467 | Msa0799940:intron |
| ACAGGTTTCTTTGTATTCTG+CGG | 0.567258 | 5_3:-13376203 | None:intergenic |
| GTTGTTCCTAAGCTTCCGGA+TGG | 0.569025 | 5_3:+13376308 | Msa0799940:CDS |
| ACGAGTAGGTTTGATAGCAG+AGG | 0.604802 | 5_3:-13375332 | None:intergenic |
| AAATGGACTGTTTATGTGCG+TGG | 0.607530 | 5_3:+13375864 | Msa0799940:CDS |
| TTCAGGAACCAGTGGCTCAG+TGG | 0.609060 | 5_3:-13376503 | None:intergenic |
| GGTTCAGATTGTGATCAAGA+GGG | 0.613238 | 5_3:+13375468 | Msa0799940:intron |
| GCAGAGGAATCATCATCAGT+GGG | 0.613682 | 5_3:-13375316 | None:intergenic |
| CTGAGAAGTTCAGGAACCAG+TGG | 0.616400 | 5_3:-13376511 | None:intergenic |
| AGCAGAGGAATCATCATCAG+TGG | 0.616651 | 5_3:-13375317 | None:intergenic |
| ATGCAGAACCTGTTGGCGAG+CGG | 0.618917 | 5_3:-13376561 | None:intergenic |
| CGTGCGAGAAAAGCCTCAGA+AGG | 0.629363 | 5_3:-13376263 | None:intergenic |
| GGTCGAACCTATGAATGACA+AGG | 0.642634 | 5_3:+13376457 | Msa0799940:CDS |
| GTCGAACCTATGAATGACAA+GGG | 0.645605 | 5_3:+13376458 | Msa0799940:CDS |
| ACATTCAGATATCTCAAAAG+GGG | 0.650798 | 5_3:-13375979 | None:intergenic |
| GAGGTTTAGAAGAATAGACA+TGG | 0.671266 | 5_3:+13377583 | Msa0799940:three_prime_UTR |
| TGTCATTGAATCTTACAATG+AGG | 0.676551 | 5_3:+13376226 | Msa0799940:CDS |
| CTGGTTCCTGAACTTCTCAG+AGG | 0.682622 | 5_3:+13376514 | Msa0799940:CDS |
| CATTCAGATATCTCAAAAGG+GGG | 0.698972 | 5_3:-13375978 | None:intergenic |
| TCGAACCTATGAATGACAAG+GGG | 0.714166 | 5_3:+13376459 | Msa0799940:CDS |
| AGACGAGCTCTTAAAACTAG+CGG | 0.761110 | 5_3:+13376538 | Msa0799940:CDS |
| TATATCCAAAACAATCTACG+GGG | 0.771191 | 5_3:-13377531 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTATTCTTCATTATT+TGG | + | chr5_3:13375422-13375441 | Msa0799940:intron | 10.0% |
| !!! | TTTAATAAAGATTGTATTTT+TGG | + | chr5_3:13375447-13375466 | Msa0799940:intron | 10.0% |
| !!! | AAAATAAATACAATCAATTT+TGG | + | chr5_3:13376730-13376749 | Msa0799940:intron | 10.0% |
| !!! | AAATAAATACAATCAATTTT+GGG | + | chr5_3:13376731-13376750 | Msa0799940:intron | 10.0% |
| !! | AGTATTATTGGAAATTTAAT+TGG | + | chr5_3:13375756-13375775 | Msa0799940:intron | 15.0% |
| !! | GTATTATTGGAAATTTAATT+GGG | + | chr5_3:13375757-13375776 | Msa0799940:intron | 15.0% |
| !!! | CATATAATAATGTTACTTTA+AGG | - | chr5_3:13376688-13376707 | None:intergenic | 15.0% |
| !!! | AATAAATACAATCAATTTTG+GGG | + | chr5_3:13376732-13376751 | Msa0799940:intron | 15.0% |
| !!! | ATATCTTGATAGATATTTTT+TGG | + | chr5_3:13377437-13377456 | Msa0799940:three_prime_UTR | 15.0% |
| !!! | TTATGCCAAAATATTTTATA+TGG | + | chr5_3:13377618-13377637 | Msa0799940:three_prime_UTR | 15.0% |
| !!! | TATCACCATATAAAATATTT+TGG | - | chr5_3:13377626-13377645 | None:intergenic | 15.0% |
| !! | AAAAAGTGAAAACAGAATTA+GGG | - | chr5_3:13375404-13375423 | None:intergenic | 20.0% |
| !! | AAAAAAGTGAAAACAGAATT+AGG | - | chr5_3:13375405-13375424 | None:intergenic | 20.0% |
| !!! | TTTTTATTTTCTCAGTGTTT+TGG | + | chr5_3:13375575-13375594 | Msa0799940:intron | 20.0% |
| !! | TTTAATCATTTGATGTTACT+AGG | + | chr5_3:13375829-13375848 | Msa0799940:intron | 20.0% |
| !!! | ATAAAGAAAAGCTTTTGAAA+GGG | - | chr5_3:13376409-13376428 | None:intergenic | 20.0% |
| !!! | TATAAAGAAAAGCTTTTGAA+AGG | - | chr5_3:13376410-13376429 | None:intergenic | 20.0% |
| !!! | TATGCATTTTCTATTTGAAT+AGG | + | chr5_3:13376596-13376615 | Msa0799940:intron | 20.0% |
| !! | AACATTATTATATGCAGTTA+TGG | + | chr5_3:13376694-13376713 | Msa0799940:intron | 20.0% |
| !! | ACATTATTATATGCAGTTAT+GGG | + | chr5_3:13376695-13376714 | Msa0799940:intron | 20.0% |
| !! | ACAAATACAAAAAGCAAAAA+AGG | - | chr5_3:13377014-13377033 | None:intergenic | 20.0% |
| !! | AAAAACAAACTAATCCATTA+AGG | - | chr5_3:13377085-13377104 | None:intergenic | 20.0% |
| !! | TGCAAAACAAATAAAACATT+CGG | - | chr5_3:13377112-13377131 | None:intergenic | 20.0% |
| !! | AATATATCCAAAACAATCTA+CGG | - | chr5_3:13377536-13377555 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTTGATTCCTTAG+TGG | - | chr5_3:13375131-13375150 | None:intergenic | 25.0% |
| ! | TGAGAAATGAAGAAGAAATT+GGG | - | chr5_3:13375235-13375254 | None:intergenic | 25.0% |
| ! | TTGAGAAATGAAGAAGAAAT+TGG | - | chr5_3:13375236-13375255 | None:intergenic | 25.0% |
| ! | ATTTGTGTTCCTATTGTTTA+TGG | + | chr5_3:13375505-13375524 | Msa0799940:CDS | 25.0% |
| ! | TTTGTGTTCCTATTGTTTAT+GGG | + | chr5_3:13375506-13375525 | Msa0799940:CDS | 25.0% |
| !!! | TGACTTTTGTTTGTTTTCAT+AGG | + | chr5_3:13376141-13376160 | Msa0799940:intron | 25.0% |
| ! | ACAATCGAAAAATCACTAAA+AGG | - | chr5_3:13376361-13376380 | None:intergenic | 25.0% |
| !!! | TAAAGAAAAGCTTTTGAAAG+GGG | - | chr5_3:13376408-13376427 | None:intergenic | 25.0% |
| ! | CATTATTATATGCAGTTATG+GGG | + | chr5_3:13376696-13376715 | Msa0799940:intron | 25.0% |
| ! | ATCTTGATTAATTGCACATT+AGG | - | chr5_3:13376879-13376898 | None:intergenic | 25.0% |
| !!! | ATGTTTTATTTGTTTTGCAC+TGG | + | chr5_3:13377113-13377132 | Msa0799940:intron | 25.0% |
| !!! | ATGTTTTATTTGTTTTGCAC+TGG | + | chr5_3:13377113-13377132 | Msa0799940:intron | 25.0% |
| !!! | TCTTGATAGATATTTTTTGG+AGG | + | chr5_3:13377440-13377459 | Msa0799940:three_prime_UTR | 25.0% |
| ! | ATATATCCAAAACAATCTAC+GGG | - | chr5_3:13377535-13377554 | None:intergenic | 25.0% |
| AAGAAGAAATTGGGGATTTA+GGG | - | chr5_3:13375226-13375245 | None:intergenic | 30.0% | |
| GAGAAATGAAGAAGAAATTG+GGG | - | chr5_3:13375234-13375253 | None:intergenic | 30.0% | |
| !!! | AATGAAATTTTGAGACGAGT+AGG | - | chr5_3:13375349-13375368 | None:intergenic | 30.0% |
| ! | TAGGGTTTTTACCTTTTTGT+CGG | - | chr5_3:13375386-13375405 | None:intergenic | 30.0% |
| TTTAGATTGAAGACCCAATT+TGG | + | chr5_3:13375607-13375626 | Msa0799940:intron | 30.0% | |
| TCTCGATTATGAAAATGTCA+AGG | + | chr5_3:13375724-13375743 | Msa0799940:intron | 30.0% | |
| ATTATGAAAATGTCAAGGAC+TGG | + | chr5_3:13375729-13375748 | Msa0799940:intron | 30.0% | |
| ACATTCAGATATCTCAAAAG+GGG | - | chr5_3:13375982-13376001 | None:intergenic | 30.0% | |
| CACATTCAGATATCTCAAAA+GGG | - | chr5_3:13375983-13376002 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTTGACTCGTTACT+TGG | + | chr5_3:13376101-13376120 | Msa0799940:intron | 30.0% |
| TTGTAAGATTCAATGACAAC+AGG | - | chr5_3:13376224-13376243 | None:intergenic | 30.0% | |
| TGTCATTGAATCTTACAATG+AGG | + | chr5_3:13376226-13376245 | Msa0799940:CDS | 30.0% | |
| TTCTTTATAATCCCTTCTGT+TGG | + | chr5_3:13376421-13376440 | Msa0799940:intron | 30.0% | |
| TATGACTAGAGAATTGTTAG+CGG | + | chr5_3:13376625-13376644 | Msa0799940:intron | 30.0% | |
| ! | TATTGGCTAGTGAAACTTAT+TGG | + | chr5_3:13376967-13376986 | Msa0799940:intron | 30.0% |
| !!! | TTATTTGTTTTGCACTGGTT+TGG | + | chr5_3:13377118-13377137 | Msa0799940:intron | 30.0% |
| !!! | TTATTTGTTTTGCACTGGTT+TGG | + | chr5_3:13377118-13377137 | Msa0799940:intron | 30.0% |
| !! | AAAGGAAACAGTTGATTTTG+TGG | - | chr5_3:13377193-13377212 | None:intergenic | 30.0% |
| ATGTGGATTTCTCTTAATTG+TGG | + | chr5_3:13377219-13377238 | Msa0799940:intron | 30.0% | |
| AGACAATTAACTTTGTTGGA+AGG | + | chr5_3:13377366-13377385 | Msa0799940:CDS | 30.0% | |
| TATATCCAAAACAATCTACG+GGG | - | chr5_3:13377534-13377553 | None:intergenic | 30.0% | |
| !!! | TAGGGTTTTGGAGAGAAATT+GGG | - | chr5_3:13375201-13375220 | None:intergenic | 35.0% |
| !!! | TTAGGGTTTTGGAGAGAAAT+TGG | - | chr5_3:13375202-13375221 | None:intergenic | 35.0% |
| ! | AATTGGGGATTTAGGGTTTA+GGG | - | chr5_3:13375219-13375238 | None:intergenic | 35.0% |
| ! | AAATTGGGGATTTAGGGTTT+AGG | - | chr5_3:13375220-13375239 | None:intergenic | 35.0% |
| GAAGAAGAAATTGGGGATTT+AGG | - | chr5_3:13375227-13375246 | None:intergenic | 35.0% | |
| ! | ACGTTTGAGATTGAGACATT+TGG | - | chr5_3:13375267-13375286 | None:intergenic | 35.0% |
| GCAATAGTCCCATAAACAAT+AGG | - | chr5_3:13375517-13375536 | None:intergenic | 35.0% | |
| ! | TGGGACTATTGCATTTTATC+TGG | + | chr5_3:13375525-13375544 | Msa0799940:CDS | 35.0% |
| ! | GGGACTATTGCATTTTATCT+GGG | + | chr5_3:13375526-13375545 | Msa0799940:CDS | 35.0% |
| ! | CTATTGCATTTTATCTGGGT+AGG | + | chr5_3:13375530-13375549 | Msa0799940:CDS | 35.0% |
| AAATTGCAAGGGACCAAATT+GGG | - | chr5_3:13375623-13375642 | None:intergenic | 35.0% | |
| AAAATTGCAAGGGACCAAAT+TGG | - | chr5_3:13375624-13375643 | None:intergenic | 35.0% | |
| ! | AATTTTCTCGCAGCTCAATT+TGG | + | chr5_3:13375638-13375657 | Msa0799940:intron | 35.0% |
| ACATCTGTTATAATGAGCCA+GGG | - | chr5_3:13375695-13375714 | None:intergenic | 35.0% | |
| AACATCTGTTATAATGAGCC+AGG | - | chr5_3:13375696-13375715 | None:intergenic | 35.0% | |
| !! | AGGACTGGTTTGAGTATTAT+TGG | + | chr5_3:13375744-13375763 | Msa0799940:intron | 35.0% |
| AAAATTGTGAGGGACCAAAT+TGG | + | chr5_3:13375787-13375806 | Msa0799940:intron | 35.0% | |
| AAATTGTGAGGGACCAAATT+GGG | + | chr5_3:13375788-13375807 | Msa0799940:intron | 35.0% | |
| TCAAGAGTAAAGACCCAATT+TGG | - | chr5_3:13375804-13375823 | None:intergenic | 35.0% | |
| CTAGGTCTCAATCTCATAAA+TGG | + | chr5_3:13375847-13375866 | Msa0799940:intron | 35.0% | |
| GTGATTCAACAACTCTTGTT+GGG | - | chr5_3:13375959-13375978 | None:intergenic | 35.0% | |
| CATTCAGATATCTCAAAAGG+GGG | - | chr5_3:13375981-13376000 | None:intergenic | 35.0% | |
| CCACATTCAGATATCTCAAA+AGG | - | chr5_3:13375984-13376003 | None:intergenic | 35.0% | |
| !!! | CCTTTTGAGATATCTGAATG+TGG | + | chr5_3:13375981-13376000 | Msa0799940:CDS | 35.0% |
| TTGAGATATCTGAATGTGGT+TGG | + | chr5_3:13375985-13376004 | Msa0799940:CDS | 35.0% | |
| TGAGATATCTGAATGTGGTT+GGG | + | chr5_3:13375986-13376005 | Msa0799940:CDS | 35.0% | |
| TTGTATCCTGAAGATGAATC+TGG | + | chr5_3:13376179-13376198 | Msa0799940:CDS | 35.0% | |
| ACAGGTTTCTTTGTATTCTG+CGG | - | chr5_3:13376206-13376225 | None:intergenic | 35.0% | |
| ATCACTAAAAGGAATGTACC+CGG | - | chr5_3:13376350-13376369 | None:intergenic | 35.0% | |
| CAATCAGTATTGTCAATTGC+AGG | - | chr5_3:13376841-13376860 | None:intergenic | 35.0% | |
| TGCACATTAGGAATGAATCA+GGG | - | chr5_3:13376867-13376886 | None:intergenic | 35.0% | |
| TTGCACATTAGGAATGAATC+AGG | - | chr5_3:13376868-13376887 | None:intergenic | 35.0% | |
| !!! | GATGTCGAAGAGTGTTTTAT+TGG | + | chr5_3:13376950-13376969 | Msa0799940:intron | 35.0% |
| !!! | CTTCTTGTTTTTAGTGTACG+AGG | + | chr5_3:13377041-13377060 | Msa0799940:intron | 35.0% |
| TAAGGTTCACCATCCAATAA+AGG | - | chr5_3:13377067-13377086 | None:intergenic | 35.0% | |
| TATTGGATGGTGAACCTTAA+TGG | + | chr5_3:13377068-13377087 | Msa0799940:intron | 35.0% | |
| AACTGTGTTTGCAATGTCTT+AGG | + | chr5_3:13377317-13377336 | Msa0799940:intron | 35.0% | |
| GCGAAGACAATTAACTTTGT+TGG | + | chr5_3:13377362-13377381 | Msa0799940:CDS | 35.0% | |
| TCAAAACAGCCATCTGATTA+GGG | + | chr5_3:13377399-13377418 | Msa0799940:CDS | 35.0% | |
| !! | TTTTTGGAGGATTTCCCTTT+AGG | + | chr5_3:13377453-13377472 | Msa0799940:three_prime_UTR | 35.0% |
| !! | TTTTGGAGGATTTCCCTTTA+GGG | + | chr5_3:13377454-13377473 | Msa0799940:three_prime_UTR | 35.0% |
| GAGGTTTAGAAGAATAGACA+TGG | + | chr5_3:13377583-13377602 | Msa0799940:three_prime_UTR | 35.0% | |
| AGAAGAATAGACATGGTTCT+TGG | + | chr5_3:13377590-13377609 | Msa0799940:three_prime_UTR | 35.0% | |
| !! | GGATTTAGGGTTTAGGGTTT+TGG | - | chr5_3:13375213-13375232 | None:intergenic | 40.0% |
| ! | CTTTTTGTCGGAATCTTCAG+AGG | - | chr5_3:13375374-13375393 | None:intergenic | 40.0% |
| ! | CTCTGAAGATTCCGACAAAA+AGG | + | chr5_3:13375372-13375391 | Msa0799940:CDS | 40.0% |
| TGGTTCAGATTGTGATCAAG+AGG | + | chr5_3:13375467-13375486 | Msa0799940:intron | 40.0% | |
| GGTTCAGATTGTGATCAAGA+GGG | + | chr5_3:13375468-13375487 | Msa0799940:intron | 40.0% | |
| GATTGTGATCAAGAGGGTTA+AGG | + | chr5_3:13375474-13375493 | Msa0799940:intron | 40.0% | |
| ! | TGCATTTTATCTGGGTAGGA+AGG | + | chr5_3:13375534-13375553 | Msa0799940:CDS | 40.0% |
| TCTCCGGCAAAAAATTAGTC+CGG | + | chr5_3:13375661-13375680 | Msa0799940:intron | 40.0% | |
| !! | AAATGGACTGTTTATGTGCG+TGG | + | chr5_3:13375864-13375883 | Msa0799940:CDS | 40.0% |
| ATCTTAGCGCTGTTGTTAAG+AGG | + | chr5_3:13375901-13375920 | Msa0799940:CDS | 40.0% | |
| TCTTAGCGCTGTTGTTAAGA+GGG | + | chr5_3:13375902-13375921 | Msa0799940:CDS | 40.0% | |
| ! | CTTGTTGGGTTGTTGAAACT+AGG | - | chr5_3:13375945-13375964 | None:intergenic | 40.0% |
| GGTGATTCAACAACTCTTGT+TGG | - | chr5_3:13375960-13375979 | None:intergenic | 40.0% | |
| GAGATATCTGAATGTGGTTG+GGG | + | chr5_3:13375987-13376006 | Msa0799940:CDS | 40.0% | |
| TGATGCCTGTGAAAAACAGT+TGG | + | chr5_3:13376046-13376065 | Msa0799940:CDS | 40.0% | |
| !! | CAGATCCAACTGTTTTTCAC+AGG | - | chr5_3:13376054-13376073 | None:intergenic | 40.0% |
| ACAGTTGGATCTGTAAGCTT+CGG | + | chr5_3:13376061-13376080 | Msa0799940:intron | 40.0% | |
| ! | TGTTTTTCCTGAACCTTCTG+AGG | + | chr5_3:13376250-13376269 | Msa0799940:CDS | 40.0% |
| ! | TGTTGTTGTTCCTAAGCTTC+CGG | + | chr5_3:13376304-13376323 | Msa0799940:CDS | 40.0% |
| CTTGGTAAATTCAAGCCATC+CGG | - | chr5_3:13376326-13376345 | None:intergenic | 40.0% | |
| TCACTAAAAGGAATGTACCC+GGG | - | chr5_3:13376349-13376368 | None:intergenic | 40.0% | |
| TACTGCAGAAACCAACAGAA+GGG | - | chr5_3:13376435-13376454 | None:intergenic | 40.0% | |
| TTGTCATTCATAGGTTCGAC+CGG | - | chr5_3:13376458-13376477 | None:intergenic | 40.0% | |
| GTCGAACCTATGAATGACAA+GGG | + | chr5_3:13376458-13376477 | Msa0799940:CDS | 40.0% | |
| TCGAACCTATGAATGACAAG+GGG | + | chr5_3:13376459-13376478 | Msa0799940:CDS | 40.0% | |
| AGACGAGCTCTTAAAACTAG+CGG | + | chr5_3:13376538-13376557 | Msa0799940:CDS | 40.0% | |
| TTAGTGTACGAGGCCTTTAT+TGG | + | chr5_3:13377051-13377070 | Msa0799940:intron | 40.0% | |
| AGAAATCCACATGTGCACAA+AGG | - | chr5_3:13377211-13377230 | None:intergenic | 40.0% | |
| GTCAAAACAGCCATCTGATT+AGG | + | chr5_3:13377398-13377417 | Msa0799940:CDS | 40.0% | |
| CATGTACATCCCTAATCAGA+TGG | - | chr5_3:13377411-13377430 | None:intergenic | 40.0% | |
| !! | TTTCCCTTTAGGGTCAAACT+TGG | + | chr5_3:13377464-13377483 | Msa0799940:three_prime_UTR | 40.0% |
| CTTCCAAGTTTGACCCTAAA+GGG | - | chr5_3:13377470-13377489 | None:intergenic | 40.0% | |
| TCTTCCAAGTTTGACCCTAA+AGG | - | chr5_3:13377471-13377490 | None:intergenic | 40.0% | |
| ! | ATCTTCCCCGTAGATTGTTT+TGG | + | chr5_3:13377526-13377545 | Msa0799940:three_prime_UTR | 40.0% |
| CTTCTAAACCTCCAAACAAC+TGG | - | chr5_3:13377575-13377594 | None:intergenic | 40.0% | |
| ! | TCATCTTGCTGTCTCTTGAG+TGG | - | chr5_3:13375292-13375311 | None:intergenic | 45.0% |
| GCAGAGGAATCATCATCAGT+GGG | - | chr5_3:13375319-13375338 | None:intergenic | 45.0% | |
| AGCAGAGGAATCATCATCAG+TGG | - | chr5_3:13375320-13375339 | None:intergenic | 45.0% | |
| ! | ACGAGTAGGTTTGATAGCAG+AGG | - | chr5_3:13375335-13375354 | None:intergenic | 45.0% |
| GAGCTGCGAGAAAATTGCAA+GGG | - | chr5_3:13375634-13375653 | None:intergenic | 45.0% | |
| TGAGCTGCGAGAAAATTGCA+AGG | - | chr5_3:13375635-13375654 | None:intergenic | 45.0% | |
| CTCCGGCAAAAAATTAGTCC+GGG | + | chr5_3:13375662-13375681 | Msa0799940:intron | 45.0% | |
| TCCGGCAAAAAATTAGTCCG+GGG | + | chr5_3:13375663-13375682 | Msa0799940:intron | 45.0% | |
| !!! | TCCCCGGACTAATTTTTTGC+CGG | - | chr5_3:13375667-13375686 | None:intergenic | 45.0% |
| TGGGTCACGAGAAAATTGTG+AGG | + | chr5_3:13375776-13375795 | Msa0799940:intron | 45.0% | |
| GGGTCACGAGAAAATTGTGA+GGG | + | chr5_3:13375777-13375796 | Msa0799940:intron | 45.0% | |
| ! | GTTTTTCACAGGCATCACTG+TGG | - | chr5_3:13376043-13376062 | None:intergenic | 45.0% |
| AGAAAAGCCTCAGAAGGTTC+AGG | - | chr5_3:13376260-13376279 | None:intergenic | 45.0% | |
| AGCTTAGGAACAACAACAGC+AGG | - | chr5_3:13376302-13376321 | None:intergenic | 45.0% | |
| TGGCTTGAATTTACCAAGCC+CGG | + | chr5_3:13376328-13376347 | Msa0799940:CDS | 45.0% | |
| GTACTGCAGAAACCAACAGA+AGG | - | chr5_3:13376436-13376455 | None:intergenic | 45.0% | |
| !! | TCTGTTGGTTTCTGCAGTAC+CGG | + | chr5_3:13376436-13376455 | Msa0799940:intron | 45.0% |
| GGTCGAACCTATGAATGACA+AGG | + | chr5_3:13376457-13376476 | Msa0799940:CDS | 45.0% | |
| ACAAAGCATGCAGAACCTGT+TGG | - | chr5_3:13376571-13376590 | None:intergenic | 45.0% | |
| GTGCTACAGCATTGTTGCAT+AGG | + | chr5_3:13376785-13376804 | Msa0799940:intron | 45.0% | |
| TTGCAGGTCGCAGAAAATAG+TGG | - | chr5_3:13376825-13376844 | None:intergenic | 45.0% | |
| TGTACGAGGCCTTTATTGGA+TGG | + | chr5_3:13377055-13377074 | Msa0799940:intron | 45.0% | |
| CTGTTTCCTTTGTGCACATG+TGG | + | chr5_3:13377202-13377221 | Msa0799940:intron | 45.0% | |
| !!! | TCAGATGGCTGTTTTGACTG+AGG | - | chr5_3:13377396-13377415 | None:intergenic | 45.0% |
| CTGTGTAGAAGCCAGTTGTT+TGG | + | chr5_3:13377561-13377580 | Msa0799940:three_prime_UTR | 45.0% | |
| TGTAGAAGCCAGTTGTTTGG+AGG | + | chr5_3:13377564-13377583 | Msa0799940:three_prime_UTR | 45.0% | |
| TCGCAGCTCAATTTGGTCTC+CGG | + | chr5_3:13375645-13375664 | Msa0799940:intron | 50.0% | |
| TGTGCGTGGAGCTTCTAATG+AGG | + | chr5_3:13375878-13375897 | Msa0799940:CDS | 50.0% | |
| TGCGGACCAGATTCATCTTC+AGG | - | chr5_3:13376188-13376207 | None:intergenic | 50.0% | |
| GTTGTTCCTAAGCTTCCGGA+TGG | + | chr5_3:13376308-13376327 | Msa0799940:CDS | 50.0% | |
| TTCAAGCCATCCGGAAGCTT+AGG | - | chr5_3:13376317-13376336 | None:intergenic | 50.0% | |
| GGCTTGAATTTACCAAGCCC+GGG | + | chr5_3:13376329-13376348 | Msa0799940:CDS | 50.0% | |
| AAAAGGAATGTACCCGGGCT+TGG | - | chr5_3:13376344-13376363 | None:intergenic | 50.0% | |
| CCTCTCCCCTTGTCATTCAT+AGG | - | chr5_3:13376467-13376486 | None:intergenic | 50.0% | |
| CCTATGAATGACAAGGGGAG+AGG | + | chr5_3:13376464-13376483 | Msa0799940:CDS | 50.0% | |
| GTGGCTCAGTGGATGATCTT+TGG | - | chr5_3:13376495-13376514 | None:intergenic | 50.0% | |
| AAGATCATCCACTGAGCCAC+TGG | + | chr5_3:13376495-13376514 | Msa0799940:CDS | 50.0% | |
| CTGAGAAGTTCAGGAACCAG+TGG | - | chr5_3:13376514-13376533 | None:intergenic | 50.0% | |
| CTGGTTCCTGAACTTCTCAG+AGG | + | chr5_3:13376514-13376533 | Msa0799940:CDS | 50.0% | |
| CGTGCGAGAAAAGCCTCAGA+AGG | - | chr5_3:13376266-13376285 | None:intergenic | 55.0% | |
| TTCAGGAACCAGTGGCTCAG+TGG | - | chr5_3:13376506-13376525 | None:intergenic | 55.0% | |
| ! | CGTCTGCCTCTGAGAAGTTC+AGG | - | chr5_3:13376523-13376542 | None:intergenic | 55.0% |
| ATGCAGAACCTGTTGGCGAG+CGG | - | chr5_3:13376564-13376583 | None:intergenic | 55.0% | |
| TTAGTCCGGGGACAAGTCCC+TGG | + | chr5_3:13375675-13375694 | Msa0799940:intron | 60.0% | |
| ATGAGCCAGGGACTTGTCCC+CGG | - | chr5_3:13375683-13375702 | None:intergenic | 60.0% | |
| ACTAGCGGCCGCTCGCCAAC+AGG | + | chr5_3:13376553-13376572 | Msa0799940:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 13375119 | 13377705 | 13375119 | ID=Msa0799940;Name=Msa0799940 |
| chr5_3 | mRNA | 13375119 | 13377705 | 13375119 | ID=Msa0799940-mRNA-1;Parent=Msa0799940;Name=Msa0799940-mRNA-1;_AED=0.10;_eAED=0.10;_QI=149|1|1|1|1|1|6|286|275 |
| chr5_3 | exon | 13375119 | 13375393 | 13375119 | ID=Msa0799940-mRNA-1:exon:5453;Parent=Msa0799940-mRNA-1 |
| chr5_3 | exon | 13375475 | 13375563 | 13375475 | ID=Msa0799940-mRNA-1:exon:5454;Parent=Msa0799940-mRNA-1 |
| chr5_3 | exon | 13375851 | 13376072 | 13375851 | ID=Msa0799940-mRNA-1:exon:5455;Parent=Msa0799940-mRNA-1 |
| chr5_3 | exon | 13376163 | 13376350 | 13376163 | ID=Msa0799940-mRNA-1:exon:5456;Parent=Msa0799940-mRNA-1 |
| chr5_3 | exon | 13376453 | 13376574 | 13376453 | ID=Msa0799940-mRNA-1:exon:5457;Parent=Msa0799940-mRNA-1 |
| chr5_3 | exon | 13377339 | 13377705 | 13377339 | ID=Msa0799940-mRNA-1:exon:5458;Parent=Msa0799940-mRNA-1 |
| chr5_3 | five_prime_UTR | 13375119 | 13375267 | 13375119 | ID=Msa0799940-mRNA-1:five_prime_utr;Parent=Msa0799940-mRNA-1 |
| chr5_3 | CDS | 13375268 | 13375393 | 13375268 | ID=Msa0799940-mRNA-1:cds;Parent=Msa0799940-mRNA-1 |
| chr5_3 | CDS | 13375475 | 13375563 | 13375475 | ID=Msa0799940-mRNA-1:cds;Parent=Msa0799940-mRNA-1 |
| chr5_3 | CDS | 13375851 | 13376072 | 13375851 | ID=Msa0799940-mRNA-1:cds;Parent=Msa0799940-mRNA-1 |
| chr5_3 | CDS | 13376163 | 13376350 | 13376163 | ID=Msa0799940-mRNA-1:cds;Parent=Msa0799940-mRNA-1 |
| chr5_3 | CDS | 13376453 | 13376574 | 13376453 | ID=Msa0799940-mRNA-1:cds;Parent=Msa0799940-mRNA-1 |
| chr5_3 | CDS | 13377339 | 13377419 | 13377339 | ID=Msa0799940-mRNA-1:cds;Parent=Msa0799940-mRNA-1 |
| chr5_3 | three_prime_UTR | 13377420 | 13377705 | 13377420 | ID=Msa0799940-mRNA-1:three_prime_utr;Parent=Msa0799940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
