Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384190 | XP_003612162.1 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 542 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384190 | sp|Q9FH40|TA14B_ARATH | 66.284 | 261 | 80 | 2 | 10 | 270 | 9 | 261 | 4.97e-128 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384190 | G7JW72 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 542 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033950 | Msa1384190 | 0.847126 | 1.408557e-59 | -8.615850e-47 |
| Msa0034030 | Msa1384190 | 0.841279 | 5.231552e-58 | -8.615850e-47 |
| Msa0043660 | Msa1384190 | 0.808066 | 3.717676e-50 | -8.615850e-47 |
| Msa0048550 | Msa1384190 | 0.993496 | 3.855796e-200 | -8.615850e-47 |
| Msa0070700 | Msa1384190 | 0.807489 | 4.929079e-50 | -8.615850e-47 |
| Msa0075500 | Msa1384190 | 0.808698 | 2.725167e-50 | -8.615850e-47 |
| Msa0105620 | Msa1384190 | 0.819403 | 1.182916e-52 | -8.615850e-47 |
| Msa0115400 | Msa1384190 | 0.803057 | 4.179248e-49 | -8.615850e-47 |
| Msa1358250 | Msa1384190 | 0.817454 | 3.269531e-52 | -8.615850e-47 |
| Msa1384190 | Msa1392780 | 0.809072 | 2.267134e-50 | -8.615850e-47 |
| Msa1384190 | Msa1400220 | 0.841753 | 3.924874e-58 | -8.615850e-47 |
| Msa1384190 | Msa1403420 | 0.822782 | 1.970491e-53 | -8.615850e-47 |
| Msa1384190 | Msa1411750 | 0.831592 | 1.529570e-55 | -8.615850e-47 |
| Msa1384190 | Msa1419870 | 0.822784 | 1.967892e-53 | -8.615850e-47 |
| Msa1384190 | Msa1429120 | 0.987753 | 2.075910e-171 | -8.615850e-47 |
| Msa1384190 | Msa1457920 | 0.809993 | 1.437490e-50 | -8.615850e-47 |
| Msa0660490 | Msa1384190 | 0.823068 | 1.689971e-53 | -8.615850e-47 |
| Msa0685140 | Msa1384190 | 0.819021 | 1.444891e-52 | -8.615850e-47 |
| Msa0689260 | Msa1384190 | 0.819284 | 1.258830e-52 | -8.615850e-47 |
| Msa0711780 | Msa1384190 | 0.804321 | 2.285198e-49 | -8.615850e-47 |
| Msa0715700 | Msa1384190 | 0.818375 | 2.026139e-52 | -8.615850e-47 |
| Msa0719610 | Msa1384190 | 0.805198 | 1.498982e-49 | -8.615850e-47 |
| Msa0741230 | Msa1384190 | 0.800331 | 1.515551e-48 | -8.615850e-47 |
| Msa0754380 | Msa1384190 | 0.988527 | 2.266425e-174 | -8.615850e-47 |
| Msa0763330 | Msa1384190 | 0.822314 | 2.531763e-53 | -8.615850e-47 |
| Msa0799260 | Msa1384190 | 0.809194 | 2.134901e-50 | -8.615850e-47 |
| Msa0799310 | Msa1384190 | 0.805580 | 1.246294e-49 | -8.615850e-47 |
| Msa0799940 | Msa1384190 | 0.900376 | 7.797918e-78 | -8.615850e-47 |
| Msa0123360 | Msa1384190 | 0.807969 | 3.897967e-50 | -8.615850e-47 |
| Msa0128050 | Msa1384190 | 0.828249 | 9.983642e-55 | -8.615850e-47 |
| Msa0137550 | Msa1384190 | 0.813295 | 2.751754e-51 | -8.615850e-47 |
| Msa0139350 | Msa1384190 | 0.826002 | 3.445044e-54 | -8.615850e-47 |
| Msa0144370 | Msa1384190 | 0.810500 | 1.117632e-50 | -8.615850e-47 |
| Msa0159170 | Msa1384190 | 0.829702 | 4.440417e-55 | -8.615850e-47 |
| Msa0168230 | Msa1384190 | 0.842717 | 2.180321e-58 | -8.615850e-47 |
| Msa1266990 | Msa1384190 | 0.810886 | 9.220468e-51 | -8.615850e-47 |
| Msa0388700 | Msa1384190 | 0.822877 | 1.872477e-53 | -8.615850e-47 |
| Msa0437360 | Msa1384190 | 0.809797 | 1.584146e-50 | -8.615850e-47 |
| Msa0482130 | Msa1384190 | 0.827669 | 1.376934e-54 | -8.615850e-47 |
| Msa1009820 | Msa1384190 | 0.802730 | 4.883659e-49 | -8.615850e-47 |
| Msa1051200 | Msa1384190 | 0.813376 | 2.640587e-51 | -8.615850e-47 |
| Msa0325590 | Msa1384190 | 0.837821 | 4.145700e-57 | -8.615850e-47 |
| Msa1128570 | Msa1384190 | 0.814755 | 1.310451e-51 | -8.615850e-47 |
| Msa1137700 | Msa1384190 | 0.811652 | 6.291318e-51 | -8.615850e-47 |
| Msa1153060 | Msa1384190 | 0.847043 | 1.484447e-59 | -8.615850e-47 |
| Msa1160590 | Msa1384190 | 0.822798 | 1.953329e-53 | -8.615850e-47 |
| Msa1174470 | Msa1384190 | 0.813306 | 2.736495e-51 | -8.615850e-47 |
| Msa1209260 | Msa1384190 | 0.813229 | 2.845434e-51 | -8.615850e-47 |
| Msa0493410 | Msa1384190 | 0.822503 | 2.288274e-53 | -8.615850e-47 |
| Msa0542090 | Msa1384190 | 0.835130 | 2.007372e-56 | -8.615850e-47 |
| Msa0542130 | Msa1384190 | 0.834699 | 2.577063e-56 | -8.615850e-47 |
| Msa0566100 | Msa1384190 | 0.804199 | 2.423049e-49 | -8.615850e-47 |
| Msa0585510 | Msa1384190 | 0.818314 | 2.091417e-52 | -8.615850e-47 |
| Msa0861860 | Msa1384190 | 0.801099 | 1.056373e-48 | -8.615850e-47 |
| Msa0945440 | Msa1384190 | 0.819772 | 9.745052e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384190 | MtrunA17_Chr5g0405361 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 542 |
| Msa1384190 | MtrunA17_Chr4g0036171 | 71.308 | 237 | 66 | 1 | 36 | 272 | 32 | 266 | 2.68e-128 | 365 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384190 | AT5G45600.2 | 66.667 | 261 | 78 | 2 | 10 | 270 | 9 | 260 | 4.72e-129 | 367 |
| Msa1384190 | AT5G45600.1 | 66.284 | 261 | 80 | 2 | 10 | 270 | 9 | 261 | 5.05e-129 | 367 |
| Msa1384190 | AT2G18000.2 | 63.203 | 231 | 83 | 1 | 46 | 274 | 33 | 263 | 2.85e-108 | 314 |
| Msa1384190 | AT2G18000.1 | 67.879 | 165 | 51 | 1 | 46 | 208 | 33 | 197 | 7.70e-83 | 248 |
Find 83 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAGAAATTGGGGATTT+AGG | 0.119714 | tig0020645:+72113 | None:intergenic |
| ATTTGTGTTCCTATTGTTTA+TGG | 0.155857 | tig0020645:-71832 | Msa1384190:CDS |
| GGATTTAGGGTTTAGGGTTT+TGG | 0.171824 | tig0020645:+72127 | None:intergenic |
| TTGAGAAATGAAGAAGAAAT+TGG | 0.193899 | tig0020645:+72104 | None:intergenic |
| TATCACCATATAAAATATTT+TGG | 0.199066 | tig0020645:+69691 | None:intergenic |
| AAGAAGAAATTGGGGATTTA+GGG | 0.234618 | tig0020645:+72114 | None:intergenic |
| ATCTTCCCCGTAGATTGTTT+TGG | 0.301941 | tig0020645:-69788 | Msa1384190:three_prime_UTR |
| AAATTGGGGATTTAGGGTTT+AGG | 0.308547 | tig0020645:+72120 | None:intergenic |
| CTAGGTCTCAATCTCATAAA+TGG | 0.308690 | tig0020645:-71467 | Msa1384190:intron |
| CTTCCAAGTTTGACCCTAAA+GGG | 0.311001 | tig0020645:+69847 | None:intergenic |
| TGAGAAATGAAGAAGAAATT+GGG | 0.319935 | tig0020645:+72105 | None:intergenic |
| CTCTGAAGATTCCGACAAAA+AGG | 0.323148 | tig0020645:-71965 | Msa1384190:intron |
| GTCAAAACAGCCATCTGATT+AGG | 0.323162 | tig0020645:-69916 | Msa1384190:exon |
| TGCGGACCAGATTCATCTTC+AGG | 0.323612 | tig0020645:+71129 | None:intergenic |
| TTTGTGTTCCTATTGTTTAT+GGG | 0.329826 | tig0020645:-71831 | Msa1384190:CDS |
| AATTGGGGATTTAGGGTTTA+GGG | 0.342091 | tig0020645:+72121 | None:intergenic |
| AGAAGAATAGACATGGTTCT+TGG | 0.350504 | tig0020645:-69724 | Msa1384190:three_prime_UTR |
| GCGAAGACAATTAACTTTGT+TGG | 0.360143 | tig0020645:-69952 | Msa1384190:CDS |
| TGAGATATCTGAATGTGGTT+GGG | 0.370519 | tig0020645:-71328 | Msa1384190:CDS |
| TGTTGTTGTTCCTAAGCTTC+CGG | 0.377160 | tig0020645:-71010 | Msa1384190:CDS |
| CCTCTCCCCTTGTCATTCAT+AGG | 0.378226 | tig0020645:+70850 | None:intergenic |
| GTGATTCAACAACTCTTGTT+GGG | 0.380529 | tig0020645:+71358 | None:intergenic |
| CGTCTGCCTCTGAGAAGTTC+AGG | 0.383496 | tig0020645:+70794 | None:intergenic |
| CTGTGTAGAAGCCAGTTGTT+TGG | 0.386903 | tig0020645:-69753 | Msa1384190:three_prime_UTR |
| TCAAAACAGCCATCTGATTA+GGG | 0.394516 | tig0020645:-69915 | Msa1384190:exon |
| TCTTCCAAGTTTGACCCTAA+AGG | 0.402244 | tig0020645:+69846 | None:intergenic |
| GGTGATTCAACAACTCTTGT+TGG | 0.404893 | tig0020645:+71357 | None:intergenic |
| ATCTTAGCGCTGTTGTTAAG+AGG | 0.408823 | tig0020645:-71413 | Msa1384190:CDS |
| CTTCTAAACCTCCAAACAAC+TGG | 0.411904 | tig0020645:+69742 | None:intergenic |
| GCAATAGTCCCATAAACAAT+AGG | 0.416181 | tig0020645:+71823 | None:intergenic |
| AGAAAAGCCTCAGAAGGTTC+AGG | 0.431687 | tig0020645:+71057 | None:intergenic |
| ACTAGCGGCCGCTCGCCAAC+AGG | 0.433354 | tig0020645:-70761 | Msa1384190:intron |
| GATTGTGATCAAGAGGGTTA+AGG | 0.439714 | tig0020645:-71863 | Msa1384190:CDS |
| TGGCTTGAATTTACCAAGCC+CGG | 0.441883 | tig0020645:-70986 | Msa1384190:CDS |
| CCACATTCAGATATCTCAAA+AGG | 0.442736 | tig0020645:+71333 | None:intergenic |
| AATATATCCAAAACAATCTA+CGG | 0.450829 | tig0020645:+69781 | None:intergenic |
| AAAAGGAATGTACCCGGGCT+TGG | 0.452777 | tig0020645:+70973 | None:intergenic |
| ACGTTTGAGATTGAGACATT+TGG | 0.453924 | tig0020645:+72073 | None:intergenic |
| TTGTAAGATTCAATGACAAC+AGG | 0.457288 | tig0020645:+71093 | None:intergenic |
| CACATTCAGATATCTCAAAA+GGG | 0.460624 | tig0020645:+71334 | None:intergenic |
| GTGGCTCAGTGGATGATCTT+TGG | 0.461147 | tig0020645:+70822 | None:intergenic |
| CTTGTTGGGTTGTTGAAACT+AGG | 0.464463 | tig0020645:+71372 | None:intergenic |
| TTCAAGCCATCCGGAAGCTT+AGG | 0.466794 | tig0020645:+71000 | None:intergenic |
| TGTAGAAGCCAGTTGTTTGG+AGG | 0.475320 | tig0020645:-69750 | Msa1384190:three_prime_UTR |
| TTGTATCCTGAAGATGAATC+TGG | 0.476586 | tig0020645:-71135 | Msa1384190:CDS |
| TTGAGATATCTGAATGTGGT+TGG | 0.489346 | tig0020645:-71329 | Msa1384190:CDS |
| ATATATCCAAAACAATCTAC+GGG | 0.499169 | tig0020645:+69782 | None:intergenic |
| GAGATATCTGAATGTGGTTG+GGG | 0.508033 | tig0020645:-71327 | Msa1384190:CDS |
| TCATCTTGCTGTCTCTTGAG+TGG | 0.510191 | tig0020645:+72048 | None:intergenic |
| TTTCCCTTTAGGGTCAAACT+TGG | 0.511163 | tig0020645:-69850 | Msa1384190:three_prime_UTR |
| GAGAAATGAAGAAGAAATTG+GGG | 0.514160 | tig0020645:+72106 | None:intergenic |
| AGACAATTAACTTTGTTGGA+AGG | 0.518481 | tig0020645:-69948 | Msa1384190:CDS |
| CTTGGTAAATTCAAGCCATC+CGG | 0.524197 | tig0020645:+70991 | None:intergenic |
| AAGATCATCCACTGAGCCAC+TGG | 0.526941 | tig0020645:-70819 | Msa1384190:CDS |
| AGCTTAGGAACAACAACAGC+AGG | 0.539488 | tig0020645:+71015 | None:intergenic |
| TCTTAGCGCTGTTGTTAAGA+GGG | 0.547459 | tig0020645:-71412 | Msa1384190:CDS |
| CCTATGAATGACAAGGGGAG+AGG | 0.556014 | tig0020645:-70850 | Msa1384190:CDS |
| TGTGCGTGGAGCTTCTAATG+AGG | 0.563078 | tig0020645:-71436 | Msa1384190:CDS |
| TTGTCATTCATAGGTTCGAC+CGG | 0.563658 | tig0020645:+70859 | None:intergenic |
| GGCTTGAATTTACCAAGCCC+GGG | 0.565243 | tig0020645:-70985 | Msa1384190:intron |
| CATGTACATCCCTAATCAGA+TGG | 0.565284 | tig0020645:+69906 | None:intergenic |
| TGGTTCAGATTGTGATCAAG+AGG | 0.565288 | tig0020645:-71870 | Msa1384190:intron |
| ACAGGTTTCTTTGTATTCTG+CGG | 0.567258 | tig0020645:+71111 | None:intergenic |
| GTTGTTCCTAAGCTTCCGGA+TGG | 0.569025 | tig0020645:-71006 | Msa1384190:CDS |
| ACGAGTAGGTTTGATAGCAG+AGG | 0.604802 | tig0020645:+72005 | None:intergenic |
| AAATGGACTGTTTATGTGCG+TGG | 0.607530 | tig0020645:-71450 | Msa1384190:CDS |
| TTCAGGAACCAGTGGCTCAG+TGG | 0.609060 | tig0020645:+70811 | None:intergenic |
| GGTTCAGATTGTGATCAAGA+GGG | 0.613238 | tig0020645:-71869 | Msa1384190:intron |
| GCAGAGGAATCATCATCAGT+GGG | 0.613682 | tig0020645:+72021 | None:intergenic |
| CTGAGAAGTTCAGGAACCAG+TGG | 0.616400 | tig0020645:+70803 | None:intergenic |
| AGCAGAGGAATCATCATCAG+TGG | 0.616651 | tig0020645:+72020 | None:intergenic |
| ATGCAGAACCTGTTGGCGAG+CGG | 0.618917 | tig0020645:+70753 | None:intergenic |
| CGTGCGAGAAAAGCCTCAGA+AGG | 0.629363 | tig0020645:+71051 | None:intergenic |
| GGTCGAACCTATGAATGACA+AGG | 0.642634 | tig0020645:-70857 | Msa1384190:CDS |
| GTCGAACCTATGAATGACAA+GGG | 0.645605 | tig0020645:-70856 | Msa1384190:CDS |
| ACATTCAGATATCTCAAAAG+GGG | 0.650798 | tig0020645:+71335 | None:intergenic |
| GAGGTTTAGAAGAATAGACA+TGG | 0.671266 | tig0020645:-69731 | Msa1384190:three_prime_UTR |
| TGTCATTGAATCTTACAATG+AGG | 0.676551 | tig0020645:-71088 | Msa1384190:CDS |
| CTGGTTCCTGAACTTCTCAG+AGG | 0.682622 | tig0020645:-70800 | Msa1384190:CDS |
| CATTCAGATATCTCAAAAGG+GGG | 0.698972 | tig0020645:+71336 | None:intergenic |
| TCGAACCTATGAATGACAAG+GGG | 0.714166 | tig0020645:-70855 | Msa1384190:CDS |
| AGACGAGCTCTTAAAACTAG+CGG | 0.761110 | tig0020645:-70776 | Msa1384190:CDS |
| TATATCCAAAACAATCTACG+GGG | 0.771191 | tig0020645:+69783 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTATTCTTCATTATT+TGG | - | tig0020645:69933-69952 | Msa1384190:CDS | 10.0% |
| !!! | TTTAATAAAGATTGTATTTT+TGG | - | tig0020645:69958-69977 | Msa1384190:CDS | 10.0% |
| !!! | AAATAAATACAATCAATTTT+AGG | - | tig0020645:71265-71284 | Msa1384190:CDS | 10.0% |
| !!! | AATAAATACAATCAATTTTA+GGG | - | tig0020645:71266-71285 | Msa1384190:CDS | 10.0% |
| !!! | ATATCTTAATAGATATTTTT+TGG | - | tig0020645:71971-71990 | Msa1384190:CDS | 10.0% |
| !! | AGTATTATTGGAAATTTAAT+TGG | - | tig0020645:70267-70286 | Msa1384190:intron | 15.0% |
| !! | GTATTATTGGAAATTTAATT+GGG | - | tig0020645:70268-70287 | Msa1384190:intron | 15.0% |
| !!! | CATATAATAATGTTACTTTA+AGG | + | tig0020645:71222-71241 | None:intergenic | 15.0% |
| !!! | TTATGCCAAAATATTTTATA+TGG | - | tig0020645:72152-72171 | Msa1384190:five_prime_UTR | 15.0% |
| !!! | TATCACCATATAAAATATTT+TGG | + | tig0020645:72160-72179 | None:intergenic | 15.0% |
| !! | AAAAAGTGAAAACAGAATTA+GGG | + | tig0020645:69915-69934 | None:intergenic | 20.0% |
| !! | AAAAAAGTGAAAACAGAATT+AGG | + | tig0020645:69916-69935 | None:intergenic | 20.0% |
| !!! | TTTTTATTTTCTCAGTGTTT+TGG | - | tig0020645:70086-70105 | Msa1384190:intron | 20.0% |
| !! | TTTAATCATTTGATGTTACT+AGG | - | tig0020645:70363-70382 | Msa1384190:intron | 20.0% |
| !!! | ATAAAGAAAAGCTTTTGAAA+GGG | + | tig0020645:70943-70962 | None:intergenic | 20.0% |
| !!! | TATAAAGAAAAGCTTTTGAA+AGG | + | tig0020645:70944-70963 | None:intergenic | 20.0% |
| !!! | TATGCATTTTCTATTTGAAT+AGG | - | tig0020645:71130-71149 | Msa1384190:CDS | 20.0% |
| !! | AACATTATTATATGCAGTTA+TGG | - | tig0020645:71228-71247 | Msa1384190:intron | 20.0% |
| !! | ACATTATTATATGCAGTTAT+GGG | - | tig0020645:71229-71248 | Msa1384190:intron | 20.0% |
| !! | ACAAATACAAAAAGCAAAAA+AGG | + | tig0020645:71548-71567 | None:intergenic | 20.0% |
| !! | AAAAACAAACTAATCCATTA+AGG | + | tig0020645:71619-71638 | None:intergenic | 20.0% |
| !! | TGCAAAACAAATAAAACATT+CGG | + | tig0020645:71646-71665 | None:intergenic | 20.0% |
| !!! | TCTTAATAGATATTTTTTGG+AGG | - | tig0020645:71974-71993 | Msa1384190:CDS | 20.0% |
| !! | AATATATCCAAAACAATCTA+CGG | + | tig0020645:72070-72089 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTTGATTCCTTAG+TGG | + | tig0020645:69642-69661 | None:intergenic | 25.0% |
| ! | TGAGAAATGAAGAAGAAATT+GGG | + | tig0020645:69746-69765 | None:intergenic | 25.0% |
| ! | TTGAGAAATGAAGAAGAAAT+TGG | + | tig0020645:69747-69766 | None:intergenic | 25.0% |
| ! | ATTTGTGTTCCTATTGTTTA+TGG | - | tig0020645:70016-70035 | Msa1384190:intron | 25.0% |
| ! | TTTGTGTTCCTATTGTTTAT+GGG | - | tig0020645:70017-70036 | Msa1384190:intron | 25.0% |
| !!! | TGACTTTTGTTTGTTTTCAT+AGG | - | tig0020645:70675-70694 | Msa1384190:intron | 25.0% |
| ! | ACAATCGAAAAATCACTAAA+AGG | + | tig0020645:70895-70914 | None:intergenic | 25.0% |
| !!! | TAAAGAAAAGCTTTTGAAAG+GGG | + | tig0020645:70942-70961 | None:intergenic | 25.0% |
| ! | CATTATTATATGCAGTTATG+GGG | - | tig0020645:71230-71249 | Msa1384190:intron | 25.0% |
| ! | ATCTTGATTAATTGCACATT+AGG | + | tig0020645:71413-71432 | None:intergenic | 25.0% |
| !!! | ATGTTTTATTTGTTTTGCAC+TGG | - | tig0020645:71647-71666 | Msa1384190:intron | 25.0% |
| !!! | ATGTTTTATTTGTTTTGCAC+TGG | - | tig0020645:71647-71666 | Msa1384190:intron | 25.0% |
| ! | ATATATCCAAAACAATCTAC+GGG | + | tig0020645:72069-72088 | None:intergenic | 25.0% |
| AAGAAGAAATTGGGGATTTA+GGG | + | tig0020645:69737-69756 | None:intergenic | 30.0% | |
| GAGAAATGAAGAAGAAATTG+GGG | + | tig0020645:69745-69764 | None:intergenic | 30.0% | |
| !!! | AATGAAATTTTGAGACGAGT+AGG | + | tig0020645:69860-69879 | None:intergenic | 30.0% |
| ! | TAGGGTTTTTACCTTTTTGT+CGG | + | tig0020645:69897-69916 | None:intergenic | 30.0% |
| TTTAGATTGAAGACCCAATT+TGG | - | tig0020645:70118-70137 | Msa1384190:intron | 30.0% | |
| TCTCGATTATGAAAATGTCA+AGG | - | tig0020645:70235-70254 | Msa1384190:intron | 30.0% | |
| ATTATGAAAATGTCAAGGAC+TGG | - | tig0020645:70240-70259 | Msa1384190:intron | 30.0% | |
| ACATTCAGATATCTCAAAAG+GGG | + | tig0020645:70516-70535 | None:intergenic | 30.0% | |
| CACATTCAGATATCTCAAAA+GGG | + | tig0020645:70517-70536 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTTGACTCGTTACT+TGG | - | tig0020645:70635-70654 | Msa1384190:intron | 30.0% |
| TTGTAAGATTCAATGACAAC+AGG | + | tig0020645:70758-70777 | None:intergenic | 30.0% | |
| TGTCATTGAATCTTACAATG+AGG | - | tig0020645:70760-70779 | Msa1384190:intron | 30.0% | |
| TTCTTTATAATCCCTTCTGT+TGG | - | tig0020645:70955-70974 | Msa1384190:intron | 30.0% | |
| TATGACTAGAGAATTGTTAG+CGG | - | tig0020645:71159-71178 | Msa1384190:intron | 30.0% | |
| ! | TATTGGCTAGTGAAACTTAT+TGG | - | tig0020645:71501-71520 | Msa1384190:intron | 30.0% |
| !!! | TTATTTGTTTTGCACTGGTT+TGG | - | tig0020645:71652-71671 | Msa1384190:intron | 30.0% |
| !!! | TTATTTGTTTTGCACTGGTT+TGG | - | tig0020645:71652-71671 | Msa1384190:intron | 30.0% |
| !! | AAAGGAAACAGTTGATTTTG+TGG | + | tig0020645:71727-71746 | None:intergenic | 30.0% |
| ATGTGGATTTCTCTTAATTG+TGG | - | tig0020645:71753-71772 | Msa1384190:intron | 30.0% | |
| AGACAATTAACTTTGTTGGA+AGG | - | tig0020645:71900-71919 | Msa1384190:intron | 30.0% | |
| TATATCCAAAACAATCTACG+GGG | + | tig0020645:72068-72087 | None:intergenic | 30.0% | |
| !!! | TAGGGTTTTGGAGAGAAATT+GGG | + | tig0020645:69712-69731 | None:intergenic | 35.0% |
| !!! | TTAGGGTTTTGGAGAGAAAT+TGG | + | tig0020645:69713-69732 | None:intergenic | 35.0% |
| ! | AATTGGGGATTTAGGGTTTA+GGG | + | tig0020645:69730-69749 | None:intergenic | 35.0% |
| ! | AAATTGGGGATTTAGGGTTT+AGG | + | tig0020645:69731-69750 | None:intergenic | 35.0% |
| GAAGAAGAAATTGGGGATTT+AGG | + | tig0020645:69738-69757 | None:intergenic | 35.0% | |
| ! | ACGTTTGAGATTGAGACATT+TGG | + | tig0020645:69778-69797 | None:intergenic | 35.0% |
| GCAATAGTCCCATAAACAAT+AGG | + | tig0020645:70028-70047 | None:intergenic | 35.0% | |
| ! | TGGGACTATTGCATTTTATC+TGG | - | tig0020645:70036-70055 | Msa1384190:intron | 35.0% |
| ! | GGGACTATTGCATTTTATCT+GGG | - | tig0020645:70037-70056 | Msa1384190:intron | 35.0% |
| ! | CTATTGCATTTTATCTGGGT+AGG | - | tig0020645:70041-70060 | Msa1384190:intron | 35.0% |
| AAATTGCAAGGGACCAAATT+GGG | + | tig0020645:70134-70153 | None:intergenic | 35.0% | |
| AAAATTGCAAGGGACCAAAT+TGG | + | tig0020645:70135-70154 | None:intergenic | 35.0% | |
| ! | AATTTTCTCGCAGCTCAATT+TGG | - | tig0020645:70149-70168 | Msa1384190:intron | 35.0% |
| ACATCTGTTATAATGAGCCA+GGG | + | tig0020645:70206-70225 | None:intergenic | 35.0% | |
| AACATCTGTTATAATGAGCC+AGG | + | tig0020645:70207-70226 | None:intergenic | 35.0% | |
| !! | AGGACTGGTTTGAGTATTAT+TGG | - | tig0020645:70255-70274 | Msa1384190:intron | 35.0% |
| AAAATTGTGAGGGACCAAAT+TGG | - | tig0020645:70298-70317 | Msa1384190:intron | 35.0% | |
| AAATTGTGAGGGACCAAATT+GGG | - | tig0020645:70299-70318 | Msa1384190:intron | 35.0% | |
| TCAAGAGTAAAGACCCAATT+TGG | + | tig0020645:70315-70334 | None:intergenic | 35.0% | |
| CTAGGTCTCAATCTCATAAA+TGG | - | tig0020645:70381-70400 | Msa1384190:intron | 35.0% | |
| GTGATTCAACAACTCTTGTT+GGG | + | tig0020645:70493-70512 | None:intergenic | 35.0% | |
| CATTCAGATATCTCAAAAGG+GGG | + | tig0020645:70515-70534 | None:intergenic | 35.0% | |
| CCACATTCAGATATCTCAAA+AGG | + | tig0020645:70518-70537 | None:intergenic | 35.0% | |
| !!! | CCTTTTGAGATATCTGAATG+TGG | - | tig0020645:70515-70534 | Msa1384190:intron | 35.0% |
| TTGAGATATCTGAATGTGGT+TGG | - | tig0020645:70519-70538 | Msa1384190:intron | 35.0% | |
| TGAGATATCTGAATGTGGTT+GGG | - | tig0020645:70520-70539 | Msa1384190:intron | 35.0% | |
| TTGTATCCTGAAGATGAATC+TGG | - | tig0020645:70713-70732 | Msa1384190:intron | 35.0% | |
| ACAGGTTTCTTTGTATTCTG+CGG | + | tig0020645:70740-70759 | None:intergenic | 35.0% | |
| ATCACTAAAAGGAATGTACC+CGG | + | tig0020645:70884-70903 | None:intergenic | 35.0% | |
| CAATCAGTATTGTCAATTGC+AGG | + | tig0020645:71375-71394 | None:intergenic | 35.0% | |
| TGCACATTAGGAATGAATCA+GGG | + | tig0020645:71401-71420 | None:intergenic | 35.0% | |
| TTGCACATTAGGAATGAATC+AGG | + | tig0020645:71402-71421 | None:intergenic | 35.0% | |
| !!! | GATGTCGAAGAGTGTTTTAT+TGG | - | tig0020645:71484-71503 | Msa1384190:intron | 35.0% |
| !!! | CTTCTTGTTTTTAGTGTACG+AGG | - | tig0020645:71575-71594 | Msa1384190:intron | 35.0% |
| TAAGGTTCACCATCCAATAA+AGG | + | tig0020645:71601-71620 | None:intergenic | 35.0% | |
| TATTGGATGGTGAACCTTAA+TGG | - | tig0020645:71602-71621 | Msa1384190:intron | 35.0% | |
| AACTGTGTTTGCAATGTCTT+AGG | - | tig0020645:71851-71870 | Msa1384190:CDS | 35.0% | |
| GCGAAGACAATTAACTTTGT+TGG | - | tig0020645:71896-71915 | Msa1384190:intron | 35.0% | |
| TCAAAACAGCCATCTGATTA+GGG | - | tig0020645:71933-71952 | Msa1384190:intron | 35.0% | |
| !! | TTTTTGGAGGATTTCCCTTT+AGG | - | tig0020645:71987-72006 | Msa1384190:CDS | 35.0% |
| !! | TTTTGGAGGATTTCCCTTTA+GGG | - | tig0020645:71988-72007 | Msa1384190:CDS | 35.0% |
| GAGGTTTAGAAGAATAGACA+TGG | - | tig0020645:72117-72136 | Msa1384190:five_prime_UTR | 35.0% | |
| AGAAGAATAGACATGGTTCT+TGG | - | tig0020645:72124-72143 | Msa1384190:five_prime_UTR | 35.0% | |
| !! | GGATTTAGGGTTTAGGGTTT+TGG | + | tig0020645:69724-69743 | None:intergenic | 40.0% |
| ! | CTTTTTGTCGGAATCTTCAG+AGG | + | tig0020645:69885-69904 | None:intergenic | 40.0% |
| ! | CTCTGAAGATTCCGACAAAA+AGG | - | tig0020645:69883-69902 | Msa1384190:three_prime_UTR | 40.0% |
| TGGTTCAGATTGTGATCAAG+AGG | - | tig0020645:69978-69997 | Msa1384190:CDS | 40.0% | |
| GGTTCAGATTGTGATCAAGA+GGG | - | tig0020645:69979-69998 | Msa1384190:intron | 40.0% | |
| GATTGTGATCAAGAGGGTTA+AGG | - | tig0020645:69985-70004 | Msa1384190:intron | 40.0% | |
| ! | TGCATTTTATCTGGGTAGGA+AGG | - | tig0020645:70045-70064 | Msa1384190:intron | 40.0% |
| TCTCCGGCAAAAAATTAGTC+CGG | - | tig0020645:70172-70191 | Msa1384190:intron | 40.0% | |
| !! | AAATGGACTGTTTATGTGCG+TGG | - | tig0020645:70398-70417 | Msa1384190:intron | 40.0% |
| ATCTTAGCGCTGTTGTTAAG+AGG | - | tig0020645:70435-70454 | Msa1384190:intron | 40.0% | |
| TCTTAGCGCTGTTGTTAAGA+GGG | - | tig0020645:70436-70455 | Msa1384190:intron | 40.0% | |
| ! | CTTGTTGGGTTGTTGAAACT+AGG | + | tig0020645:70479-70498 | None:intergenic | 40.0% |
| GGTGATTCAACAACTCTTGT+TGG | + | tig0020645:70494-70513 | None:intergenic | 40.0% | |
| GAGATATCTGAATGTGGTTG+GGG | - | tig0020645:70521-70540 | Msa1384190:intron | 40.0% | |
| TGATGCCTGTGAAAAACAGT+TGG | - | tig0020645:70580-70599 | Msa1384190:intron | 40.0% | |
| !! | CAGATCCAACTGTTTTTCAC+AGG | + | tig0020645:70588-70607 | None:intergenic | 40.0% |
| ACAGTTGGATCTGTAAGCTT+CGG | - | tig0020645:70595-70614 | Msa1384190:intron | 40.0% | |
| ! | TGTTTTTCCTGAACCTTCTG+AGG | - | tig0020645:70784-70803 | Msa1384190:CDS | 40.0% |
| ! | TGTTGTTGTTCCTAAGCTTC+CGG | - | tig0020645:70838-70857 | Msa1384190:CDS | 40.0% |
| CTTGGTAAATTCAAGCCATC+CGG | + | tig0020645:70860-70879 | None:intergenic | 40.0% | |
| TCACTAAAAGGAATGTACCC+GGG | + | tig0020645:70883-70902 | None:intergenic | 40.0% | |
| TACTGCAGAAACCAACAGAA+GGG | + | tig0020645:70969-70988 | None:intergenic | 40.0% | |
| TTGTCATTCATAGGTTCGAC+CGG | + | tig0020645:70992-71011 | None:intergenic | 40.0% | |
| GTCGAACCTATGAATGACAA+GGG | - | tig0020645:70992-71011 | Msa1384190:CDS | 40.0% | |
| TCGAACCTATGAATGACAAG+GGG | - | tig0020645:70993-71012 | Msa1384190:CDS | 40.0% | |
| AGACGAGCTCTTAAAACTAG+CGG | - | tig0020645:71072-71091 | Msa1384190:CDS | 40.0% | |
| GTGCTATAGCATTGTTGCAT+AGG | - | tig0020645:71319-71338 | Msa1384190:CDS | 40.0% | |
| TTAGTGTACGAGGCCTTTAT+TGG | - | tig0020645:71585-71604 | Msa1384190:intron | 40.0% | |
| AGAAATCCACATGTGCACAA+AGG | + | tig0020645:71745-71764 | None:intergenic | 40.0% | |
| GTCAAAACAGCCATCTGATT+AGG | - | tig0020645:71932-71951 | Msa1384190:intron | 40.0% | |
| CATGTACATCCCTAATCAGA+TGG | + | tig0020645:71945-71964 | None:intergenic | 40.0% | |
| !! | TTTCCCTTTAGGGTCAAACT+TGG | - | tig0020645:71998-72017 | Msa1384190:CDS | 40.0% |
| CTTCCAAGTTTGACCCTAAA+GGG | + | tig0020645:72004-72023 | None:intergenic | 40.0% | |
| TCTTCCAAGTTTGACCCTAA+AGG | + | tig0020645:72005-72024 | None:intergenic | 40.0% | |
| ! | ATCTTCCCCGTAGATTGTTT+TGG | - | tig0020645:72060-72079 | Msa1384190:CDS | 40.0% |
| CTTCTAAACCTCCAAACAAC+TGG | + | tig0020645:72109-72128 | None:intergenic | 40.0% | |
| ! | TCATCTTGCTGTCTCTTGAG+TGG | + | tig0020645:69803-69822 | None:intergenic | 45.0% |
| GCAGAGGAATCATCATCAGT+GGG | + | tig0020645:69830-69849 | None:intergenic | 45.0% | |
| AGCAGAGGAATCATCATCAG+TGG | + | tig0020645:69831-69850 | None:intergenic | 45.0% | |
| ! | ACGAGTAGGTTTGATAGCAG+AGG | + | tig0020645:69846-69865 | None:intergenic | 45.0% |
| GAGCTGCGAGAAAATTGCAA+GGG | + | tig0020645:70145-70164 | None:intergenic | 45.0% | |
| TGAGCTGCGAGAAAATTGCA+AGG | + | tig0020645:70146-70165 | None:intergenic | 45.0% | |
| CTCCGGCAAAAAATTAGTCC+GGG | - | tig0020645:70173-70192 | Msa1384190:intron | 45.0% | |
| TCCGGCAAAAAATTAGTCCG+GGG | - | tig0020645:70174-70193 | Msa1384190:intron | 45.0% | |
| !!! | TCCCCGGACTAATTTTTTGC+CGG | + | tig0020645:70178-70197 | None:intergenic | 45.0% |
| TGGGTCACGAGAAAATTGTG+AGG | - | tig0020645:70287-70306 | Msa1384190:intron | 45.0% | |
| GGGTCACGAGAAAATTGTGA+GGG | - | tig0020645:70288-70307 | Msa1384190:intron | 45.0% | |
| ! | GTTTTTCACAGGCATCACTG+TGG | + | tig0020645:70577-70596 | None:intergenic | 45.0% |
| AGAAAAGCCTCAGAAGGTTC+AGG | + | tig0020645:70794-70813 | None:intergenic | 45.0% | |
| AGCTTAGGAACAACAACAGC+AGG | + | tig0020645:70836-70855 | None:intergenic | 45.0% | |
| TGGCTTGAATTTACCAAGCC+CGG | - | tig0020645:70862-70881 | Msa1384190:CDS | 45.0% | |
| GTACTGCAGAAACCAACAGA+AGG | + | tig0020645:70970-70989 | None:intergenic | 45.0% | |
| !! | TCTGTTGGTTTCTGCAGTAC+CGG | - | tig0020645:70970-70989 | Msa1384190:intron | 45.0% |
| GGTCGAACCTATGAATGACA+AGG | - | tig0020645:70991-71010 | Msa1384190:CDS | 45.0% | |
| ACAAAGCATGCAGAACCTGT+TGG | + | tig0020645:71105-71124 | None:intergenic | 45.0% | |
| TTGCAGGTCGCAGAAAATAG+TGG | + | tig0020645:71359-71378 | None:intergenic | 45.0% | |
| TGTACGAGGCCTTTATTGGA+TGG | - | tig0020645:71589-71608 | Msa1384190:intron | 45.0% | |
| CTGTTTCCTTTGTGCACATG+TGG | - | tig0020645:71736-71755 | Msa1384190:intron | 45.0% | |
| !!! | TCAGATGGCTGTTTTGACTG+AGG | + | tig0020645:71930-71949 | None:intergenic | 45.0% |
| CTGTGTAGAAGCCAGTTGTT+TGG | - | tig0020645:72095-72114 | Msa1384190:five_prime_UTR | 45.0% | |
| TGTAGAAGCCAGTTGTTTGG+AGG | - | tig0020645:72098-72117 | Msa1384190:five_prime_UTR | 45.0% | |
| TCGCAGCTCAATTTGGTCTC+CGG | - | tig0020645:70156-70175 | Msa1384190:intron | 50.0% | |
| TGTGCGTGGAGCTTCTAATG+AGG | - | tig0020645:70412-70431 | Msa1384190:intron | 50.0% | |
| TGCGGACCAGATTCATCTTC+AGG | + | tig0020645:70722-70741 | None:intergenic | 50.0% | |
| GTTGTTCCTAAGCTTCCGGA+TGG | - | tig0020645:70842-70861 | Msa1384190:CDS | 50.0% | |
| TTCAAGCCATCCGGAAGCTT+AGG | + | tig0020645:70851-70870 | None:intergenic | 50.0% | |
| GGCTTGAATTTACCAAGCCC+GGG | - | tig0020645:70863-70882 | Msa1384190:CDS | 50.0% | |
| AAAAGGAATGTACCCGGGCT+TGG | + | tig0020645:70878-70897 | None:intergenic | 50.0% | |
| CCTCTCCCCTTGTCATTCAT+AGG | + | tig0020645:71001-71020 | None:intergenic | 50.0% | |
| CCTATGAATGACAAGGGGAG+AGG | - | tig0020645:70998-71017 | Msa1384190:CDS | 50.0% | |
| GTGGCTCAGTGGATGATCTT+TGG | + | tig0020645:71029-71048 | None:intergenic | 50.0% | |
| AAGATCATCCACTGAGCCAC+TGG | - | tig0020645:71029-71048 | Msa1384190:CDS | 50.0% | |
| CTGAGAAGTTCAGGAACCAG+TGG | + | tig0020645:71048-71067 | None:intergenic | 50.0% | |
| CTGGTTCCTGAACTTCTCAG+AGG | - | tig0020645:71048-71067 | Msa1384190:CDS | 50.0% | |
| CGTGCGAGAAAAGCCTCAGA+AGG | + | tig0020645:70800-70819 | None:intergenic | 55.0% | |
| TTCAGGAACCAGTGGCTCAG+TGG | + | tig0020645:71040-71059 | None:intergenic | 55.0% | |
| ! | CGTCTGCCTCTGAGAAGTTC+AGG | + | tig0020645:71057-71076 | None:intergenic | 55.0% |
| ATGCAGAACCTGTTGGCGAG+CGG | + | tig0020645:71098-71117 | None:intergenic | 55.0% | |
| TTAGTCCGGGGACAAGTCCC+TGG | - | tig0020645:70186-70205 | Msa1384190:intron | 60.0% | |
| ATGAGCCAGGGACTTGTCCC+CGG | + | tig0020645:70194-70213 | None:intergenic | 60.0% | |
| ACTAGCGGCCGCTCGCCAAC+AGG | - | tig0020645:71087-71106 | Msa1384190:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020645 | gene | 69630 | 72240 | 69630 | ID=Msa1384190;Name=Msa1384190 |
| tig0020645 | mRNA | 69630 | 72240 | 69630 | ID=Msa1384190-mRNA-1;Parent=Msa1384190;Name=Msa1384190-mRNA-1;_AED=0.10;_eAED=0.10;_QI=149|1|1|1|1|1|6|287|275 |
| tig0020645 | exon | 69630 | 69997 | 69630 | ID=Msa1384190-mRNA-1:exon:9013;Parent=Msa1384190-mRNA-1 |
| tig0020645 | exon | 70762 | 70883 | 70762 | ID=Msa1384190-mRNA-1:exon:9012;Parent=Msa1384190-mRNA-1 |
| tig0020645 | exon | 70986 | 71173 | 70986 | ID=Msa1384190-mRNA-1:exon:9011;Parent=Msa1384190-mRNA-1 |
| tig0020645 | exon | 71264 | 71485 | 71264 | ID=Msa1384190-mRNA-1:exon:9010;Parent=Msa1384190-mRNA-1 |
| tig0020645 | exon | 71796 | 71884 | 71796 | ID=Msa1384190-mRNA-1:exon:9009;Parent=Msa1384190-mRNA-1 |
| tig0020645 | exon | 71966 | 72240 | 71966 | ID=Msa1384190-mRNA-1:exon:9008;Parent=Msa1384190-mRNA-1 |
| tig0020645 | five_prime_UTR | 72092 | 72240 | 72092 | ID=Msa1384190-mRNA-1:five_prime_utr;Parent=Msa1384190-mRNA-1 |
| tig0020645 | CDS | 71966 | 72091 | 71966 | ID=Msa1384190-mRNA-1:cds;Parent=Msa1384190-mRNA-1 |
| tig0020645 | CDS | 71796 | 71884 | 71796 | ID=Msa1384190-mRNA-1:cds;Parent=Msa1384190-mRNA-1 |
| tig0020645 | CDS | 71264 | 71485 | 71264 | ID=Msa1384190-mRNA-1:cds;Parent=Msa1384190-mRNA-1 |
| tig0020645 | CDS | 70986 | 71173 | 70986 | ID=Msa1384190-mRNA-1:cds;Parent=Msa1384190-mRNA-1 |
| tig0020645 | CDS | 70762 | 70883 | 70762 | ID=Msa1384190-mRNA-1:cds;Parent=Msa1384190-mRNA-1 |
| tig0020645 | CDS | 69917 | 69997 | 69917 | ID=Msa1384190-mRNA-1:cds;Parent=Msa1384190-mRNA-1 |
| tig0020645 | three_prime_UTR | 69630 | 69916 | 69630 | ID=Msa1384190-mRNA-1:three_prime_utr;Parent=Msa1384190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
