Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429120 | XP_003612162.1 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 542 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429120 | sp|Q9FH40|TA14B_ARATH | 66.284 | 261 | 80 | 2 | 10 | 270 | 9 | 261 | 4.97e-128 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429120 | G7JW72 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 542 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033950 | Msa1429120 | 0.823189 | 1.583863e-53 | -8.615850e-47 |
| Msa0034030 | Msa1429120 | 0.816220 | 6.188560e-52 | -8.615850e-47 |
| Msa0048550 | Msa1429120 | 0.989665 | 4.171624e-179 | -8.615850e-47 |
| Msa0105620 | Msa1429120 | 0.803012 | 4.270374e-49 | -8.615850e-47 |
| Msa1358250 | Msa1429120 | 0.803333 | 3.664496e-49 | -8.615850e-47 |
| Msa1384190 | Msa1429120 | 0.987753 | 2.075910e-171 | -8.615850e-47 |
| Msa1400220 | Msa1429120 | 0.817171 | 3.787468e-52 | -8.615850e-47 |
| Msa1403420 | Msa1429120 | 0.822750 | 2.004039e-53 | -8.615850e-47 |
| Msa1411750 | Msa1429120 | 0.817893 | 2.603866e-52 | -8.615850e-47 |
| Msa0660490 | Msa1429120 | 0.817286 | 3.568345e-52 | -8.615850e-47 |
| Msa0689260 | Msa1429120 | 0.804556 | 2.040934e-49 | -8.615850e-47 |
| Msa0715700 | Msa1429120 | 0.806274 | 8.909301e-50 | -8.615850e-47 |
| Msa0754380 | Msa1429120 | 0.983861 | 6.497015e-159 | -8.615850e-47 |
| Msa0799260 | Msa1429120 | 0.803307 | 3.711026e-49 | -8.615850e-47 |
| Msa0799940 | Msa1429120 | 0.883359 | 4.797972e-71 | -8.615850e-47 |
| Msa0128050 | Msa1429120 | 0.807299 | 5.409549e-50 | -8.615850e-47 |
| Msa0137550 | Msa1429120 | 0.801563 | 8.489091e-49 | -8.615850e-47 |
| Msa0139350 | Msa1429120 | 0.814313 | 1.642052e-51 | -8.615850e-47 |
| Msa0159170 | Msa1429120 | 0.824711 | 6.960161e-54 | -8.615850e-47 |
| Msa0168230 | Msa1429120 | 0.832915 | 7.197440e-56 | -8.615850e-47 |
| Msa0388700 | Msa1429120 | 0.801646 | 8.161472e-49 | -8.615850e-47 |
| Msa0482130 | Msa1429120 | 0.806925 | 6.491574e-50 | -8.615850e-47 |
| Msa1051200 | Msa1429120 | 0.804670 | 1.932142e-49 | -8.615850e-47 |
| Msa0325590 | Msa1429120 | 0.831750 | 1.398323e-55 | -8.615850e-47 |
| Msa1153060 | Msa1429120 | 0.839471 | 1.553791e-57 | -8.615850e-47 |
| Msa0493410 | Msa1429120 | 0.807906 | 4.020815e-50 | -8.615850e-47 |
| Msa0542090 | Msa1429120 | 0.810624 | 1.050618e-50 | -8.615850e-47 |
| Msa0542130 | Msa1429120 | 0.809893 | 1.510989e-50 | -8.615850e-47 |
| Msa0585510 | Msa1429120 | 0.820035 | 8.485624e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429120 | MtrunA17_Chr5g0405361 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 542 |
| Msa1429120 | MtrunA17_Chr4g0036171 | 71.308 | 237 | 66 | 1 | 36 | 272 | 32 | 266 | 2.68e-128 | 365 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429120 | AT5G45600.2 | 66.667 | 261 | 78 | 2 | 10 | 270 | 9 | 260 | 4.72e-129 | 367 |
| Msa1429120 | AT5G45600.1 | 66.284 | 261 | 80 | 2 | 10 | 270 | 9 | 261 | 5.05e-129 | 367 |
| Msa1429120 | AT2G18000.2 | 63.203 | 231 | 83 | 1 | 46 | 274 | 33 | 263 | 2.85e-108 | 314 |
| Msa1429120 | AT2G18000.1 | 67.879 | 165 | 51 | 1 | 46 | 208 | 33 | 197 | 7.70e-83 | 248 |
Find 83 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAGAAATTGGGGATTT+AGG | 0.119714 | tig0026434:+62479 | None:intergenic |
| ATTTGTGTTCCTATTGTTTA+TGG | 0.155857 | tig0026434:-62198 | Msa1429120:CDS |
| GGATTTAGGGTTTAGGGTTT+TGG | 0.171824 | tig0026434:+62493 | None:intergenic |
| TTGAGAAATGAAGAAGAAAT+TGG | 0.193899 | tig0026434:+62470 | None:intergenic |
| TATCACCATATAAAATATTT+TGG | 0.199066 | tig0026434:+60086 | None:intergenic |
| AAGAAGAAATTGGGGATTTA+GGG | 0.234618 | tig0026434:+62480 | None:intergenic |
| ATCTTCCCCGTAGATTGTTT+TGG | 0.301941 | tig0026434:-60183 | Msa1429120:three_prime_UTR |
| AAATTGGGGATTTAGGGTTT+AGG | 0.308547 | tig0026434:+62486 | None:intergenic |
| CTAGGTCTCAATCTCATAAA+TGG | 0.308690 | tig0026434:-61856 | Msa1429120:intron |
| CTTCCAAGTTTGACCCTAAA+GGG | 0.311001 | tig0026434:+60242 | None:intergenic |
| TGAGAAATGAAGAAGAAATT+GGG | 0.319935 | tig0026434:+62471 | None:intergenic |
| CTCTGAAGATTCCGACAAAA+AGG | 0.323148 | tig0026434:-62331 | Msa1429120:intron |
| GTCAAAACAGCCATCTGATT+AGG | 0.323162 | tig0026434:-60311 | Msa1429120:exon |
| TGCGGACCAGATTCATCTTC+AGG | 0.323612 | tig0026434:+61518 | None:intergenic |
| TTTGTGTTCCTATTGTTTAT+GGG | 0.329826 | tig0026434:-62197 | Msa1429120:CDS |
| AATTGGGGATTTAGGGTTTA+GGG | 0.342091 | tig0026434:+62487 | None:intergenic |
| AGAAGAATAGACATGGTTCT+TGG | 0.350504 | tig0026434:-60119 | Msa1429120:three_prime_UTR |
| GCGAAGACAATTAACTTTGT+TGG | 0.360143 | tig0026434:-60347 | Msa1429120:CDS |
| TGAGATATCTGAATGTGGTT+GGG | 0.370519 | tig0026434:-61717 | Msa1429120:CDS |
| TGTTGTTGTTCCTAAGCTTC+CGG | 0.377160 | tig0026434:-61399 | Msa1429120:CDS |
| CCTCTCCCCTTGTCATTCAT+AGG | 0.378226 | tig0026434:+61239 | None:intergenic |
| GTGATTCAACAACTCTTGTT+GGG | 0.380529 | tig0026434:+61747 | None:intergenic |
| CGTCTGCCTCTGAGAAGTTC+AGG | 0.383496 | tig0026434:+61183 | None:intergenic |
| CTGTGTAGAAGCCAGTTGTT+TGG | 0.386903 | tig0026434:-60148 | Msa1429120:three_prime_UTR |
| TCAAAACAGCCATCTGATTA+GGG | 0.394516 | tig0026434:-60310 | Msa1429120:exon |
| TCTTCCAAGTTTGACCCTAA+AGG | 0.402244 | tig0026434:+60241 | None:intergenic |
| GGTGATTCAACAACTCTTGT+TGG | 0.404893 | tig0026434:+61746 | None:intergenic |
| ATCTTAGCGCTGTTGTTAAG+AGG | 0.408823 | tig0026434:-61802 | Msa1429120:CDS |
| CTTCTAAACCTCCAAACAAC+TGG | 0.411904 | tig0026434:+60137 | None:intergenic |
| GCAATAGTCCCATAAACAAT+AGG | 0.416181 | tig0026434:+62189 | None:intergenic |
| AGAAAAGCCTCAGAAGGTTC+AGG | 0.431687 | tig0026434:+61446 | None:intergenic |
| ACTAGCGGCCGCTCGCCAAC+AGG | 0.433354 | tig0026434:-61150 | Msa1429120:intron |
| GATTGTGATCAAGAGGGTTA+AGG | 0.439714 | tig0026434:-62229 | Msa1429120:CDS |
| TGGCTTGAATTTACCAAGCC+CGG | 0.441883 | tig0026434:-61375 | Msa1429120:CDS |
| CCACATTCAGATATCTCAAA+AGG | 0.442736 | tig0026434:+61722 | None:intergenic |
| AATATATCCAAAACAATCTA+CGG | 0.450829 | tig0026434:+60176 | None:intergenic |
| AAAAGGAATGTACCCGGGCT+TGG | 0.452777 | tig0026434:+61362 | None:intergenic |
| ACGTTTGAGATTGAGACATT+TGG | 0.453924 | tig0026434:+62439 | None:intergenic |
| TTGTAAGATTCAATGACAAC+AGG | 0.457288 | tig0026434:+61482 | None:intergenic |
| CACATTCAGATATCTCAAAA+GGG | 0.460624 | tig0026434:+61723 | None:intergenic |
| GTGGCTCAGTGGATGATCTT+TGG | 0.461147 | tig0026434:+61211 | None:intergenic |
| CTTGTTGGGTTGTTGAAACT+AGG | 0.464463 | tig0026434:+61761 | None:intergenic |
| TTCAAGCCATCCGGAAGCTT+AGG | 0.466794 | tig0026434:+61389 | None:intergenic |
| TGTAGAAGCCAGTTGTTTGG+AGG | 0.475320 | tig0026434:-60145 | Msa1429120:three_prime_UTR |
| TTGTATCCTGAAGATGAATC+TGG | 0.476586 | tig0026434:-61524 | Msa1429120:CDS |
| TTGAGATATCTGAATGTGGT+TGG | 0.489346 | tig0026434:-61718 | Msa1429120:CDS |
| ATATATCCAAAACAATCTAC+GGG | 0.499169 | tig0026434:+60177 | None:intergenic |
| GAGATATCTGAATGTGGTTG+GGG | 0.508033 | tig0026434:-61716 | Msa1429120:CDS |
| TCATCTTGCTGTCTCTTGAG+TGG | 0.510191 | tig0026434:+62414 | None:intergenic |
| TTTCCCTTTAGGGTCAAACT+TGG | 0.511163 | tig0026434:-60245 | Msa1429120:three_prime_UTR |
| GAGAAATGAAGAAGAAATTG+GGG | 0.514160 | tig0026434:+62472 | None:intergenic |
| AGACAATTAACTTTGTTGGA+AGG | 0.518481 | tig0026434:-60343 | Msa1429120:CDS |
| CTTGGTAAATTCAAGCCATC+CGG | 0.524197 | tig0026434:+61380 | None:intergenic |
| AAGATCATCCACTGAGCCAC+TGG | 0.526941 | tig0026434:-61208 | Msa1429120:CDS |
| AGCTTAGGAACAACAACAGC+AGG | 0.539488 | tig0026434:+61404 | None:intergenic |
| TCTTAGCGCTGTTGTTAAGA+GGG | 0.547459 | tig0026434:-61801 | Msa1429120:CDS |
| CCTATGAATGACAAGGGGAG+AGG | 0.556014 | tig0026434:-61239 | Msa1429120:CDS |
| TGTGCGTGGAGCTTCTAATG+AGG | 0.563078 | tig0026434:-61825 | Msa1429120:CDS |
| TTGTCATTCATAGGTTCGAC+CGG | 0.563658 | tig0026434:+61248 | None:intergenic |
| GGCTTGAATTTACCAAGCCC+GGG | 0.565243 | tig0026434:-61374 | Msa1429120:intron |
| CATGTACATCCCTAATCAGA+TGG | 0.565284 | tig0026434:+60301 | None:intergenic |
| TGGTTCAGATTGTGATCAAG+AGG | 0.565288 | tig0026434:-62236 | Msa1429120:intron |
| ACAGGTTTCTTTGTATTCTG+CGG | 0.567258 | tig0026434:+61500 | None:intergenic |
| GTTGTTCCTAAGCTTCCGGA+TGG | 0.569025 | tig0026434:-61395 | Msa1429120:CDS |
| ACGAGTAGGTTTGATAGCAG+AGG | 0.604802 | tig0026434:+62371 | None:intergenic |
| AAATGGACTGTTTATGTGCG+TGG | 0.607530 | tig0026434:-61839 | Msa1429120:CDS |
| TTCAGGAACCAGTGGCTCAG+TGG | 0.609060 | tig0026434:+61200 | None:intergenic |
| GGTTCAGATTGTGATCAAGA+GGG | 0.613238 | tig0026434:-62235 | Msa1429120:intron |
| GCAGAGGAATCATCATCAGT+GGG | 0.613682 | tig0026434:+62387 | None:intergenic |
| CTGAGAAGTTCAGGAACCAG+TGG | 0.616400 | tig0026434:+61192 | None:intergenic |
| AGCAGAGGAATCATCATCAG+TGG | 0.616651 | tig0026434:+62386 | None:intergenic |
| ATGCAGAACCTGTTGGCGAG+CGG | 0.618917 | tig0026434:+61142 | None:intergenic |
| CGTGCGAGAAAAGCCTCAGA+AGG | 0.629363 | tig0026434:+61440 | None:intergenic |
| GGTCGAACCTATGAATGACA+AGG | 0.642634 | tig0026434:-61246 | Msa1429120:CDS |
| GTCGAACCTATGAATGACAA+GGG | 0.645605 | tig0026434:-61245 | Msa1429120:CDS |
| ACATTCAGATATCTCAAAAG+GGG | 0.650798 | tig0026434:+61724 | None:intergenic |
| GAGGTTTAGAAGAATAGACA+TGG | 0.671266 | tig0026434:-60126 | Msa1429120:three_prime_UTR |
| TGTCATTGAATCTTACAATG+AGG | 0.676551 | tig0026434:-61477 | Msa1429120:CDS |
| CTGGTTCCTGAACTTCTCAG+AGG | 0.682622 | tig0026434:-61189 | Msa1429120:CDS |
| CATTCAGATATCTCAAAAGG+GGG | 0.698972 | tig0026434:+61725 | None:intergenic |
| TCGAACCTATGAATGACAAG+GGG | 0.714166 | tig0026434:-61244 | Msa1429120:CDS |
| AGACGAGCTCTTAAAACTAG+CGG | 0.761110 | tig0026434:-61165 | Msa1429120:CDS |
| TATATCCAAAACAATCTACG+GGG | 0.771191 | tig0026434:+60178 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTATTCTTCATTATT+TGG | - | tig0026434:60328-60347 | Msa1429120:CDS | 10.0% |
| !!! | TTTAATAAAGATTGTATTTT+TGG | - | tig0026434:60353-60372 | Msa1429120:CDS | 10.0% |
| !!! | AAATAAATACAATCAATTTT+AGG | - | tig0026434:61639-61658 | Msa1429120:intron | 10.0% |
| !!! | AATAAATACAATCAATTTTA+GGG | - | tig0026434:61640-61659 | Msa1429120:intron | 10.0% |
| !!! | ATATCTTAATAGATATTTTT+TGG | - | tig0026434:62337-62356 | Msa1429120:CDS | 10.0% |
| !! | AGTATTATTGGAAATTTAAT+TGG | - | tig0026434:60662-60681 | Msa1429120:intron | 15.0% |
| !! | GTATTATTGGAAATTTAATT+GGG | - | tig0026434:60663-60682 | Msa1429120:intron | 15.0% |
| !!! | CATATAATAATGTTACTTTA+AGG | + | tig0026434:61596-61615 | None:intergenic | 15.0% |
| !!! | TTATGCCAAAATATTTTATA+TGG | - | tig0026434:62518-62537 | Msa1429120:five_prime_UTR | 15.0% |
| !!! | TATCACCATATAAAATATTT+TGG | + | tig0026434:62526-62545 | None:intergenic | 15.0% |
| !! | AAAAAGTGAAAACAGAATTA+GGG | + | tig0026434:60310-60329 | None:intergenic | 20.0% |
| !! | AAAAAAGTGAAAACAGAATT+AGG | + | tig0026434:60311-60330 | None:intergenic | 20.0% |
| !!! | TTTTTATTTTCTCAGTGTTT+TGG | - | tig0026434:60481-60500 | Msa1429120:intron | 20.0% |
| !! | TTTAATCATTTGATGTTACT+AGG | - | tig0026434:60735-60754 | Msa1429120:intron | 20.0% |
| !!! | ATAAAGAAAAGCTTTTGAAA+GGG | + | tig0026434:61315-61334 | None:intergenic | 20.0% |
| !!! | TATAAAGAAAAGCTTTTGAA+AGG | + | tig0026434:61316-61335 | None:intergenic | 20.0% |
| !!! | TATGCATTTTCTATTTGAAT+AGG | - | tig0026434:61502-61521 | Msa1429120:CDS | 20.0% |
| !! | AACATTATTATATGCAGTTA+TGG | - | tig0026434:61602-61621 | Msa1429120:intron | 20.0% |
| !! | ACATTATTATATGCAGTTAT+GGG | - | tig0026434:61603-61622 | Msa1429120:intron | 20.0% |
| !! | AAAAACAAACTAATCCATTA+AGG | + | tig0026434:61985-62004 | None:intergenic | 20.0% |
| !! | TGCAAAACAAATAAAACATT+CGG | + | tig0026434:62012-62031 | None:intergenic | 20.0% |
| !!! | TCTTAATAGATATTTTTTGG+AGG | - | tig0026434:62340-62359 | Msa1429120:CDS | 20.0% |
| !! | AATATATCCAAAACAATCTA+CGG | + | tig0026434:62436-62455 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTTGATTCCTTAG+TGG | + | tig0026434:60037-60056 | None:intergenic | 25.0% |
| ! | TGAGAAATGAAGAAGAAATT+GGG | + | tig0026434:60141-60160 | None:intergenic | 25.0% |
| ! | TTGAGAAATGAAGAAGAAAT+TGG | + | tig0026434:60142-60161 | None:intergenic | 25.0% |
| ! | ATTTGTGTTCCTATTGTTTA+TGG | - | tig0026434:60411-60430 | Msa1429120:intron | 25.0% |
| ! | TTTGTGTTCCTATTGTTTAT+GGG | - | tig0026434:60412-60431 | Msa1429120:intron | 25.0% |
| !!! | TGACTTTTGTTTGTTTTCAT+AGG | - | tig0026434:61047-61066 | Msa1429120:intron | 25.0% |
| ! | ACAATCGAAAAATCACTAAA+AGG | + | tig0026434:61267-61286 | None:intergenic | 25.0% |
| !!! | TAAAGAAAAGCTTTTGAAAG+GGG | + | tig0026434:61314-61333 | None:intergenic | 25.0% |
| ! | CATTATTATATGCAGTTATG+GGG | - | tig0026434:61604-61623 | Msa1429120:intron | 25.0% |
| ! | ATCTTGATTAATTGCACATT+AGG | + | tig0026434:61787-61806 | None:intergenic | 25.0% |
| !!! | ATGTTTTATTTGTTTTGCAC+TGG | - | tig0026434:62013-62032 | Msa1429120:intron | 25.0% |
| !!! | ATGTTTTATTTGTTTTGCAC+TGG | - | tig0026434:62013-62032 | Msa1429120:intron | 25.0% |
| ! | ATATATCCAAAACAATCTAC+GGG | + | tig0026434:62435-62454 | None:intergenic | 25.0% |
| AAGAAGAAATTGGGGATTTA+GGG | + | tig0026434:60132-60151 | None:intergenic | 30.0% | |
| GAGAAATGAAGAAGAAATTG+GGG | + | tig0026434:60140-60159 | None:intergenic | 30.0% | |
| !!! | AATGAAATTTTGAGACGAGT+AGG | + | tig0026434:60255-60274 | None:intergenic | 30.0% |
| ! | TAGGGTTTTTACCTTTTTGT+CGG | + | tig0026434:60292-60311 | None:intergenic | 30.0% |
| TTTAGATTGAAGACCCAATT+TGG | - | tig0026434:60513-60532 | Msa1429120:intron | 30.0% | |
| ACATCTGTTATAATGAACCA+GGG | + | tig0026434:60601-60620 | None:intergenic | 30.0% | |
| AACATCTGTTATAATGAACC+AGG | + | tig0026434:60602-60621 | None:intergenic | 30.0% | |
| TCTCGATTATGAAAATGTCA+AGG | - | tig0026434:60630-60649 | Msa1429120:intron | 30.0% | |
| ATTATGAAAATGTCAAGGAC+TGG | - | tig0026434:60635-60654 | Msa1429120:intron | 30.0% | |
| ACATTCAGATATCTCAAAAG+GGG | + | tig0026434:60888-60907 | None:intergenic | 30.0% | |
| CACATTCAGATATCTCAAAA+GGG | + | tig0026434:60889-60908 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTTGACTCGTTACT+TGG | - | tig0026434:61007-61026 | Msa1429120:intron | 30.0% |
| TTGTAAGATTCAATGACAAC+AGG | + | tig0026434:61130-61149 | None:intergenic | 30.0% | |
| TGTCATTGAATCTTACAATG+AGG | - | tig0026434:61132-61151 | Msa1429120:intron | 30.0% | |
| TTCTTTATAATCCCTTCTGT+TGG | - | tig0026434:61327-61346 | Msa1429120:intron | 30.0% | |
| TATGACTAGAGAATTGTTAG+CGG | - | tig0026434:61531-61550 | Msa1429120:CDS | 30.0% | |
| ! | TATTGGCTAGTGAAACTTAT+TGG | - | tig0026434:61875-61894 | Msa1429120:intron | 30.0% |
| !!! | TTATTTGTTTTGCACTGGTT+TGG | - | tig0026434:62018-62037 | Msa1429120:intron | 30.0% |
| !!! | TTATTTGTTTTGCACTGGTT+TGG | - | tig0026434:62018-62037 | Msa1429120:intron | 30.0% |
| !! | AAAGGAAACAGTTGATTTTG+TGG | + | tig0026434:62093-62112 | None:intergenic | 30.0% |
| ATGTGGATTTCTCTTAATTG+TGG | - | tig0026434:62119-62138 | Msa1429120:intron | 30.0% | |
| AGACAATTAACTTTGTTGGA+AGG | - | tig0026434:62266-62285 | Msa1429120:intron | 30.0% | |
| TATATCCAAAACAATCTACG+GGG | + | tig0026434:62434-62453 | None:intergenic | 30.0% | |
| !!! | TAGGGTTTTGGAGAGAAATT+GGG | + | tig0026434:60107-60126 | None:intergenic | 35.0% |
| !!! | TTAGGGTTTTGGAGAGAAAT+TGG | + | tig0026434:60108-60127 | None:intergenic | 35.0% |
| ! | AATTGGGGATTTAGGGTTTA+GGG | + | tig0026434:60125-60144 | None:intergenic | 35.0% |
| ! | AAATTGGGGATTTAGGGTTT+AGG | + | tig0026434:60126-60145 | None:intergenic | 35.0% |
| GAAGAAGAAATTGGGGATTT+AGG | + | tig0026434:60133-60152 | None:intergenic | 35.0% | |
| ! | ACGTTTGAGATTGAGACATT+TGG | + | tig0026434:60173-60192 | None:intergenic | 35.0% |
| GCAATAGTCCCATAAACAAT+AGG | + | tig0026434:60423-60442 | None:intergenic | 35.0% | |
| ! | TGGGACTATTGCATTTTATC+TGG | - | tig0026434:60431-60450 | Msa1429120:intron | 35.0% |
| ! | GGGACTATTGCATTTTATCT+GGG | - | tig0026434:60432-60451 | Msa1429120:intron | 35.0% |
| ! | CTATTGCATTTTATCTGGGT+AGG | - | tig0026434:60436-60455 | Msa1429120:intron | 35.0% |
| AAATTGCAAGGGACCAAATT+GGG | + | tig0026434:60529-60548 | None:intergenic | 35.0% | |
| AAAATTGCAAGGGACCAAAT+TGG | + | tig0026434:60530-60549 | None:intergenic | 35.0% | |
| ! | AATTTTCTCGCAGCTCAATT+TGG | - | tig0026434:60544-60563 | Msa1429120:intron | 35.0% |
| !! | AGGACTGGTTTGAGTATTAT+TGG | - | tig0026434:60650-60669 | Msa1429120:intron | 35.0% |
| AAAATTGTGAGGGACCAAAT+TGG | - | tig0026434:60693-60712 | Msa1429120:intron | 35.0% | |
| AAATTGTGAGGGACCAAATT+GGG | - | tig0026434:60694-60713 | Msa1429120:intron | 35.0% | |
| TCAAGAGTAAAGACCCAATT+TGG | + | tig0026434:60710-60729 | None:intergenic | 35.0% | |
| CTAGGTCTCAATCTCATAAA+TGG | - | tig0026434:60753-60772 | Msa1429120:intron | 35.0% | |
| GTGATTCAACAACTCTTGTT+GGG | + | tig0026434:60865-60884 | None:intergenic | 35.0% | |
| CATTCAGATATCTCAAAAGG+GGG | + | tig0026434:60887-60906 | None:intergenic | 35.0% | |
| CCACATTCAGATATCTCAAA+AGG | + | tig0026434:60890-60909 | None:intergenic | 35.0% | |
| !!! | CCTTTTGAGATATCTGAATG+TGG | - | tig0026434:60887-60906 | Msa1429120:intron | 35.0% |
| TTGAGATATCTGAATGTGGT+TGG | - | tig0026434:60891-60910 | Msa1429120:intron | 35.0% | |
| TGAGATATCTGAATGTGGTT+GGG | - | tig0026434:60892-60911 | Msa1429120:intron | 35.0% | |
| TTGTATCCTGAAGATGAATC+TGG | - | tig0026434:61085-61104 | Msa1429120:intron | 35.0% | |
| ACAGGTTTCTTTGTATTCTG+CGG | + | tig0026434:61112-61131 | None:intergenic | 35.0% | |
| ATCACTAAAAGGAATGTACC+CGG | + | tig0026434:61256-61275 | None:intergenic | 35.0% | |
| CAATCAGTATTGTCAATTGC+AGG | + | tig0026434:61749-61768 | None:intergenic | 35.0% | |
| TGCACATTAGGAATGAATCA+GGG | + | tig0026434:61775-61794 | None:intergenic | 35.0% | |
| TTGCACATTAGGAATGAATC+AGG | + | tig0026434:61776-61795 | None:intergenic | 35.0% | |
| !!! | GATGTCGAAGAGTGTTTTAT+TGG | - | tig0026434:61858-61877 | Msa1429120:intron | 35.0% |
| !!! | CTTCTTGTTTTTAGTGTACG+AGG | - | tig0026434:61941-61960 | Msa1429120:intron | 35.0% |
| TAAGGTTCACCATCCAATAA+AGG | + | tig0026434:61967-61986 | None:intergenic | 35.0% | |
| TATTGGATGGTGAACCTTAA+TGG | - | tig0026434:61968-61987 | Msa1429120:intron | 35.0% | |
| AACTGTGTTTGCAATGTCTT+AGG | - | tig0026434:62217-62236 | Msa1429120:CDS | 35.0% | |
| GCGAAGACAATTAACTTTGT+TGG | - | tig0026434:62262-62281 | Msa1429120:intron | 35.0% | |
| TCAAAACAGCCATCTGATTA+GGG | - | tig0026434:62299-62318 | Msa1429120:intron | 35.0% | |
| !! | TTTTTGGAGGATTTCCCTTT+AGG | - | tig0026434:62353-62372 | Msa1429120:CDS | 35.0% |
| !! | TTTTGGAGGATTTCCCTTTA+GGG | - | tig0026434:62354-62373 | Msa1429120:CDS | 35.0% |
| GAGGTTTAGAAGAATAGACA+TGG | - | tig0026434:62483-62502 | Msa1429120:five_prime_UTR | 35.0% | |
| AGAAGAATAGACATGGTTCT+TGG | - | tig0026434:62490-62509 | Msa1429120:five_prime_UTR | 35.0% | |
| !! | GGATTTAGGGTTTAGGGTTT+TGG | + | tig0026434:60119-60138 | None:intergenic | 40.0% |
| ! | CTTTTTGTCGGAATCTTCAG+AGG | + | tig0026434:60280-60299 | None:intergenic | 40.0% |
| ! | CTCTGAAGATTCCGACAAAA+AGG | - | tig0026434:60278-60297 | Msa1429120:three_prime_UTR | 40.0% |
| TGGTTCAGATTGTGATCAAG+AGG | - | tig0026434:60373-60392 | Msa1429120:CDS | 40.0% | |
| GGTTCAGATTGTGATCAAGA+GGG | - | tig0026434:60374-60393 | Msa1429120:intron | 40.0% | |
| GATTGTGATCAAGAGGGTTA+AGG | - | tig0026434:60380-60399 | Msa1429120:intron | 40.0% | |
| ! | TGCATTTTATCTGGGTAGGA+AGG | - | tig0026434:60440-60459 | Msa1429120:intron | 40.0% |
| TCTCCGGCAAAAAATTAGTC+CGG | - | tig0026434:60567-60586 | Msa1429120:intron | 40.0% | |
| !! | AAATGGACTGTTTATGTGCG+TGG | - | tig0026434:60770-60789 | Msa1429120:intron | 40.0% |
| ATCTTAGCGCTGTTGTTAAG+AGG | - | tig0026434:60807-60826 | Msa1429120:intron | 40.0% | |
| TCTTAGCGCTGTTGTTAAGA+GGG | - | tig0026434:60808-60827 | Msa1429120:intron | 40.0% | |
| ! | CTTGTTGGGTTGTTGAAACT+AGG | + | tig0026434:60851-60870 | None:intergenic | 40.0% |
| GGTGATTCAACAACTCTTGT+TGG | + | tig0026434:60866-60885 | None:intergenic | 40.0% | |
| GAGATATCTGAATGTGGTTG+GGG | - | tig0026434:60893-60912 | Msa1429120:intron | 40.0% | |
| TGATGCCTGTGAAAAACAGT+TGG | - | tig0026434:60952-60971 | Msa1429120:intron | 40.0% | |
| !! | CAGATCCAACTGTTTTTCAC+AGG | + | tig0026434:60960-60979 | None:intergenic | 40.0% |
| ACAGTTGGATCTGTAAGCTT+CGG | - | tig0026434:60967-60986 | Msa1429120:intron | 40.0% | |
| ! | TGTTTTTCCTGAACCTTCTG+AGG | - | tig0026434:61156-61175 | Msa1429120:CDS | 40.0% |
| ! | TGTTGTTGTTCCTAAGCTTC+CGG | - | tig0026434:61210-61229 | Msa1429120:CDS | 40.0% |
| CTTGGTAAATTCAAGCCATC+CGG | + | tig0026434:61232-61251 | None:intergenic | 40.0% | |
| TCACTAAAAGGAATGTACCC+GGG | + | tig0026434:61255-61274 | None:intergenic | 40.0% | |
| TACTGCAGAAACCAACAGAA+GGG | + | tig0026434:61341-61360 | None:intergenic | 40.0% | |
| TTGTCATTCATAGGTTCGAC+CGG | + | tig0026434:61364-61383 | None:intergenic | 40.0% | |
| GTCGAACCTATGAATGACAA+GGG | - | tig0026434:61364-61383 | Msa1429120:intron | 40.0% | |
| TCGAACCTATGAATGACAAG+GGG | - | tig0026434:61365-61384 | Msa1429120:intron | 40.0% | |
| AGACGAGCTCTTAAAACTAG+CGG | - | tig0026434:61444-61463 | Msa1429120:CDS | 40.0% | |
| GTGCTATAGCATTGTTGCAT+AGG | - | tig0026434:61693-61712 | Msa1429120:CDS | 40.0% | |
| TTAGTGTACGAGGCCTTTAT+TGG | - | tig0026434:61951-61970 | Msa1429120:intron | 40.0% | |
| AGAAATCCACATGTGCACAA+AGG | + | tig0026434:62111-62130 | None:intergenic | 40.0% | |
| GTCAAAACAGCCATCTGATT+AGG | - | tig0026434:62298-62317 | Msa1429120:intron | 40.0% | |
| CATGTACATCCCTAATCAGA+TGG | + | tig0026434:62311-62330 | None:intergenic | 40.0% | |
| !! | TTTCCCTTTAGGGTCAAACT+TGG | - | tig0026434:62364-62383 | Msa1429120:CDS | 40.0% |
| CTTCCAAGTTTGACCCTAAA+GGG | + | tig0026434:62370-62389 | None:intergenic | 40.0% | |
| TCTTCCAAGTTTGACCCTAA+AGG | + | tig0026434:62371-62390 | None:intergenic | 40.0% | |
| ! | ATCTTCCCCGTAGATTGTTT+TGG | - | tig0026434:62426-62445 | Msa1429120:CDS | 40.0% |
| CTTCTAAACCTCCAAACAAC+TGG | + | tig0026434:62475-62494 | None:intergenic | 40.0% | |
| ! | TCATCTTGCTGTCTCTTGAG+TGG | + | tig0026434:60198-60217 | None:intergenic | 45.0% |
| GCAGAGGAATCATCATCAGT+GGG | + | tig0026434:60225-60244 | None:intergenic | 45.0% | |
| AGCAGAGGAATCATCATCAG+TGG | + | tig0026434:60226-60245 | None:intergenic | 45.0% | |
| ! | ACGAGTAGGTTTGATAGCAG+AGG | + | tig0026434:60241-60260 | None:intergenic | 45.0% |
| GAGCTGCGAGAAAATTGCAA+GGG | + | tig0026434:60540-60559 | None:intergenic | 45.0% | |
| TGAGCTGCGAGAAAATTGCA+AGG | + | tig0026434:60541-60560 | None:intergenic | 45.0% | |
| CTCCGGCAAAAAATTAGTCC+GGG | - | tig0026434:60568-60587 | Msa1429120:intron | 45.0% | |
| TCCGGCAAAAAATTAGTCCG+GGG | - | tig0026434:60569-60588 | Msa1429120:intron | 45.0% | |
| !!! | TCCCCGGACTAATTTTTTGC+CGG | + | tig0026434:60573-60592 | None:intergenic | 45.0% |
| TGGGTCACGAGAAAATTGTG+AGG | - | tig0026434:60682-60701 | Msa1429120:intron | 45.0% | |
| GGGTCACGAGAAAATTGTGA+GGG | - | tig0026434:60683-60702 | Msa1429120:intron | 45.0% | |
| ! | GTTTTTCACAGGCATCACTG+TGG | + | tig0026434:60949-60968 | None:intergenic | 45.0% |
| AGAAAAGCCTCAGAAGGTTC+AGG | + | tig0026434:61166-61185 | None:intergenic | 45.0% | |
| AGCTTAGGAACAACAACAGC+AGG | + | tig0026434:61208-61227 | None:intergenic | 45.0% | |
| TGGCTTGAATTTACCAAGCC+CGG | - | tig0026434:61234-61253 | Msa1429120:CDS | 45.0% | |
| GTACTGCAGAAACCAACAGA+AGG | + | tig0026434:61342-61361 | None:intergenic | 45.0% | |
| !! | TCTGTTGGTTTCTGCAGTAC+CGG | - | tig0026434:61342-61361 | Msa1429120:intron | 45.0% |
| GGTCGAACCTATGAATGACA+AGG | - | tig0026434:61363-61382 | Msa1429120:intron | 45.0% | |
| ACAAAGCATGCAGAACCTGT+TGG | + | tig0026434:61477-61496 | None:intergenic | 45.0% | |
| TTGCAGGTCGCAGAAAATAG+TGG | + | tig0026434:61733-61752 | None:intergenic | 45.0% | |
| TGTACGAGGCCTTTATTGGA+TGG | - | tig0026434:61955-61974 | Msa1429120:intron | 45.0% | |
| CTGTTTCCTTTGTGCACATG+TGG | - | tig0026434:62102-62121 | Msa1429120:intron | 45.0% | |
| !!! | TCAGATGGCTGTTTTGACTG+AGG | + | tig0026434:62296-62315 | None:intergenic | 45.0% |
| CTGTGTAGAAGCCAGTTGTT+TGG | - | tig0026434:62461-62480 | Msa1429120:five_prime_UTR | 45.0% | |
| TGTAGAAGCCAGTTGTTTGG+AGG | - | tig0026434:62464-62483 | Msa1429120:five_prime_UTR | 45.0% | |
| TCGCAGCTCAATTTGGTCTC+CGG | - | tig0026434:60551-60570 | Msa1429120:intron | 50.0% | |
| TGTGCGTGGAGCTTCTAATG+AGG | - | tig0026434:60784-60803 | Msa1429120:intron | 50.0% | |
| TGCGGACCAGATTCATCTTC+AGG | + | tig0026434:61094-61113 | None:intergenic | 50.0% | |
| GTTGTTCCTAAGCTTCCGGA+TGG | - | tig0026434:61214-61233 | Msa1429120:CDS | 50.0% | |
| TTCAAGCCATCCGGAAGCTT+AGG | + | tig0026434:61223-61242 | None:intergenic | 50.0% | |
| GGCTTGAATTTACCAAGCCC+GGG | - | tig0026434:61235-61254 | Msa1429120:CDS | 50.0% | |
| AAAAGGAATGTACCCGGGCT+TGG | + | tig0026434:61250-61269 | None:intergenic | 50.0% | |
| CCTCTCCCCTTGTCATTCAT+AGG | + | tig0026434:61373-61392 | None:intergenic | 50.0% | |
| CCTATGAATGACAAGGGGAG+AGG | - | tig0026434:61370-61389 | Msa1429120:intron | 50.0% | |
| GTGGCTCAGTGGATGATCTT+TGG | + | tig0026434:61401-61420 | None:intergenic | 50.0% | |
| AAGATCATCCACTGAGCCAC+TGG | - | tig0026434:61401-61420 | Msa1429120:CDS | 50.0% | |
| CTGAGAAGTTCAGGAACCAG+TGG | + | tig0026434:61420-61439 | None:intergenic | 50.0% | |
| CTGGTTCCTGAACTTCTCAG+AGG | - | tig0026434:61420-61439 | Msa1429120:CDS | 50.0% | |
| ATGAACCAGGGACTTGTCCC+CGG | + | tig0026434:60589-60608 | None:intergenic | 55.0% | |
| CGTGCGAGAAAAGCCTCAGA+AGG | + | tig0026434:61172-61191 | None:intergenic | 55.0% | |
| TTCAGGAACCAGTGGCTCAG+TGG | + | tig0026434:61412-61431 | None:intergenic | 55.0% | |
| ! | CGTCTGCCTCTGAGAAGTTC+AGG | + | tig0026434:61429-61448 | None:intergenic | 55.0% |
| ATGCAGAACCTGTTGGCGAG+CGG | + | tig0026434:61470-61489 | None:intergenic | 55.0% | |
| TTAGTCCGGGGACAAGTCCC+TGG | - | tig0026434:60581-60600 | Msa1429120:intron | 60.0% | |
| ACTAGCGGCCGCTCGCCAAC+AGG | - | tig0026434:61459-61478 | Msa1429120:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026434 | gene | 60025 | 62606 | 60025 | ID=Msa1429120;Name=Msa1429120 |
| tig0026434 | mRNA | 60025 | 62606 | 60025 | ID=Msa1429120-mRNA-1;Parent=Msa1429120;Name=Msa1429120-mRNA-1;_AED=0.10;_eAED=0.10;_QI=149|1|1|1|1|1|6|287|275 |
| tig0026434 | exon | 60025 | 60392 | 60025 | ID=Msa1429120-mRNA-1:exon:6338;Parent=Msa1429120-mRNA-1 |
| tig0026434 | exon | 61151 | 61272 | 61151 | ID=Msa1429120-mRNA-1:exon:6337;Parent=Msa1429120-mRNA-1 |
| tig0026434 | exon | 61375 | 61562 | 61375 | ID=Msa1429120-mRNA-1:exon:6336;Parent=Msa1429120-mRNA-1 |
| tig0026434 | exon | 61653 | 61874 | 61653 | ID=Msa1429120-mRNA-1:exon:6335;Parent=Msa1429120-mRNA-1 |
| tig0026434 | exon | 62162 | 62250 | 62162 | ID=Msa1429120-mRNA-1:exon:6334;Parent=Msa1429120-mRNA-1 |
| tig0026434 | exon | 62332 | 62606 | 62332 | ID=Msa1429120-mRNA-1:exon:6333;Parent=Msa1429120-mRNA-1 |
| tig0026434 | five_prime_UTR | 62458 | 62606 | 62458 | ID=Msa1429120-mRNA-1:five_prime_utr;Parent=Msa1429120-mRNA-1 |
| tig0026434 | CDS | 62332 | 62457 | 62332 | ID=Msa1429120-mRNA-1:cds;Parent=Msa1429120-mRNA-1 |
| tig0026434 | CDS | 62162 | 62250 | 62162 | ID=Msa1429120-mRNA-1:cds;Parent=Msa1429120-mRNA-1 |
| tig0026434 | CDS | 61653 | 61874 | 61653 | ID=Msa1429120-mRNA-1:cds;Parent=Msa1429120-mRNA-1 |
| tig0026434 | CDS | 61375 | 61562 | 61375 | ID=Msa1429120-mRNA-1:cds;Parent=Msa1429120-mRNA-1 |
| tig0026434 | CDS | 61151 | 61272 | 61151 | ID=Msa1429120-mRNA-1:cds;Parent=Msa1429120-mRNA-1 |
| tig0026434 | CDS | 60312 | 60392 | 60312 | ID=Msa1429120-mRNA-1:cds;Parent=Msa1429120-mRNA-1 |
| tig0026434 | three_prime_UTR | 60025 | 60311 | 60025 | ID=Msa1429120-mRNA-1:three_prime_utr;Parent=Msa1429120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
