Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048550 | XP_003612162.1 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 542 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048550 | sp|Q9FH40|TA14B_ARATH | 66.284 | 261 | 80 | 2 | 10 | 270 | 9 | 261 | 4.97e-128 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048550 | G7JW72 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 542 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011960 | Msa0048550 | 0.803447 | 3.471320e-49 | -8.615850e-47 |
| Msa0033950 | Msa0048550 | 0.842931 | 1.913232e-58 | -8.615850e-47 |
| Msa0034030 | Msa0048550 | 0.838737 | 2.407309e-57 | -8.615850e-47 |
| Msa0043660 | Msa0048550 | 0.810136 | 1.338915e-50 | -8.615850e-47 |
| Msa0048550 | Msa0061080 | 0.803034 | 4.227097e-49 | -8.615850e-47 |
| Msa0048550 | Msa0070700 | 0.815737 | 7.931865e-52 | -8.615850e-47 |
| Msa0048550 | Msa0075500 | 0.813058 | 3.101814e-51 | -8.615850e-47 |
| Msa0048550 | Msa0105620 | 0.825519 | 4.484804e-54 | -8.615850e-47 |
| Msa0048550 | Msa0115400 | 0.803457 | 3.454965e-49 | -8.615850e-47 |
| Msa0048550 | Msa0123360 | 0.810416 | 1.165497e-50 | -8.615850e-47 |
| Msa0048550 | Msa0128050 | 0.828785 | 7.412893e-55 | -8.615850e-47 |
| Msa0048550 | Msa0137550 | 0.816062 | 6.711125e-52 | -8.615850e-47 |
| Msa0048550 | Msa0139350 | 0.825857 | 3.729029e-54 | -8.615850e-47 |
| Msa0048550 | Msa0144370 | 0.818990 | 1.468556e-52 | -8.615850e-47 |
| Msa0048550 | Msa0159170 | 0.837594 | 4.739913e-57 | -8.615850e-47 |
| Msa0048550 | Msa0168230 | 0.852165 | 5.520090e-61 | -8.615850e-47 |
| Msa0048550 | Msa0187120 | 0.804160 | 2.468492e-49 | -8.615850e-47 |
| Msa0048550 | Msa0325590 | 0.842432 | 2.595530e-58 | -8.615850e-47 |
| Msa0048550 | Msa0388700 | 0.825828 | 3.788938e-54 | -8.615850e-47 |
| Msa0048550 | Msa0398810 | 0.802292 | 6.011717e-49 | -8.615850e-47 |
| Msa0048550 | Msa0437360 | 0.807032 | 6.161985e-50 | -8.615850e-47 |
| Msa0048550 | Msa0482130 | 0.830990 | 2.150665e-55 | -8.615850e-47 |
| Msa0048550 | Msa0493410 | 0.828050 | 1.115044e-54 | -8.615850e-47 |
| Msa0048550 | Msa0542090 | 0.836215 | 1.066028e-56 | -8.615850e-47 |
| Msa0048550 | Msa0542130 | 0.835651 | 1.482072e-56 | -8.615850e-47 |
| Msa0048550 | Msa0566100 | 0.813356 | 2.667844e-51 | -8.615850e-47 |
| Msa0048550 | Msa0585510 | 0.817075 | 3.979205e-52 | -8.615850e-47 |
| Msa0048550 | Msa0660490 | 0.824301 | 8.692973e-54 | -8.615850e-47 |
| Msa0048550 | Msa0660850 | 0.801474 | 8.850936e-49 | -8.615850e-47 |
| Msa0048550 | Msa0685140 | 0.820142 | 8.019905e-53 | -8.615850e-47 |
| Msa0048550 | Msa0689260 | 0.820798 | 5.668808e-53 | -8.615850e-47 |
| Msa0048550 | Msa0711780 | 0.802546 | 5.329441e-49 | -8.615850e-47 |
| Msa0048550 | Msa0715700 | 0.823954 | 1.048721e-53 | -8.615850e-47 |
| Msa0048550 | Msa0719610 | 0.812693 | 3.728969e-51 | -8.615850e-47 |
| Msa0048550 | Msa0741230 | 0.801955 | 7.051215e-49 | -8.615850e-47 |
| Msa0048550 | Msa0754380 | 0.986491 | 5.768281e-167 | -8.615850e-47 |
| Msa0048550 | Msa0763330 | 0.831990 | 1.220049e-55 | -8.615850e-47 |
| Msa0048550 | Msa0772480 | 0.802457 | 5.560907e-49 | -8.615850e-47 |
| Msa0048550 | Msa0793800 | 0.804086 | 2.556772e-49 | -8.615850e-47 |
| Msa0048550 | Msa0799260 | 0.812762 | 3.601899e-51 | -8.615850e-47 |
| Msa0048550 | Msa0799310 | 0.808424 | 3.118357e-50 | -8.615850e-47 |
| Msa0048550 | Msa0799940 | 0.903256 | 4.185858e-79 | -8.615850e-47 |
| Msa0048550 | Msa0861860 | 0.803906 | 2.786967e-49 | -8.615850e-47 |
| Msa0048550 | Msa0945440 | 0.821237 | 4.493510e-53 | -8.615850e-47 |
| Msa0048550 | Msa1009820 | 0.813932 | 1.992819e-51 | -8.615850e-47 |
| Msa0048550 | Msa1051200 | 0.820776 | 5.736760e-53 | -8.615850e-47 |
| Msa0048550 | Msa1083560 | 0.805782 | 1.130417e-49 | -8.615850e-47 |
| Msa0048550 | Msa1128570 | 0.817206 | 3.718057e-52 | -8.615850e-47 |
| Msa0048550 | Msa1137700 | 0.818200 | 2.218853e-52 | -8.615850e-47 |
| Msa0048550 | Msa1153060 | 0.850561 | 1.568217e-60 | -8.615850e-47 |
| Msa0048550 | Msa1160590 | 0.823906 | 1.075983e-53 | -8.615850e-47 |
| Msa0048550 | Msa1174470 | 0.812526 | 4.055310e-51 | -8.615850e-47 |
| Msa0048550 | Msa1209260 | 0.815892 | 7.322140e-52 | -8.615850e-47 |
| Msa0048550 | Msa1224810 | 0.807701 | 4.444594e-50 | -8.615850e-47 |
| Msa0048550 | Msa1266990 | 0.809894 | 1.509964e-50 | -8.615850e-47 |
| Msa0048550 | Msa1358250 | 0.818936 | 1.511305e-52 | -8.615850e-47 |
| Msa0048550 | Msa1384190 | 0.993496 | 3.855796e-200 | -8.615850e-47 |
| Msa0048550 | Msa1392780 | 0.811567 | 6.563831e-51 | -8.615850e-47 |
| Msa0048550 | Msa1400220 | 0.838920 | 2.159161e-57 | -8.615850e-47 |
| Msa0048550 | Msa1403420 | 0.821719 | 3.477734e-53 | -8.615850e-47 |
| Msa0048550 | Msa1411750 | 0.839915 | 1.190926e-57 | -8.615850e-47 |
| Msa0048550 | Msa1419870 | 0.825646 | 4.185198e-54 | -8.615850e-47 |
| Msa0048550 | Msa1429120 | 0.989665 | 4.171624e-179 | -8.615850e-47 |
| Msa0048550 | Msa1457920 | 0.814224 | 1.718193e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048550 | MtrunA17_Chr5g0405361 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 542 |
| Msa0048550 | MtrunA17_Chr4g0036171 | 71.308 | 237 | 66 | 1 | 36 | 272 | 32 | 266 | 2.68e-128 | 365 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048550 | AT5G45600.2 | 66.667 | 261 | 78 | 2 | 10 | 270 | 9 | 260 | 4.72e-129 | 367 |
| Msa0048550 | AT5G45600.1 | 66.284 | 261 | 80 | 2 | 10 | 270 | 9 | 261 | 5.05e-129 | 367 |
| Msa0048550 | AT2G18000.2 | 63.203 | 231 | 83 | 1 | 46 | 274 | 33 | 263 | 2.85e-108 | 314 |
| Msa0048550 | AT2G18000.1 | 67.879 | 165 | 51 | 1 | 46 | 208 | 33 | 197 | 7.70e-83 | 248 |
Find 83 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAGAAATTGGGGATTT+AGG | 0.119714 | 1_2:+880995 | None:intergenic |
| ATTTGTGTTCCTATTGTTTA+TGG | 0.155857 | 1_2:-880714 | Msa0048550:CDS |
| GGATTTAGGGTTTAGGGTTT+TGG | 0.171824 | 1_2:+881009 | None:intergenic |
| TTGAGAAATGAAGAAGAAAT+TGG | 0.193899 | 1_2:+880986 | None:intergenic |
| TATCACCATATAAAATATTT+TGG | 0.199066 | 1_2:+878573 | None:intergenic |
| AAGAAGAAATTGGGGATTTA+GGG | 0.234618 | 1_2:+880996 | None:intergenic |
| ATCTTCCCCGTAGATTGTTT+TGG | 0.301941 | 1_2:-878670 | Msa0048550:three_prime_UTR |
| AAATTGGGGATTTAGGGTTT+AGG | 0.308547 | 1_2:+881002 | None:intergenic |
| CTAGGTCTCAATCTCATAAA+TGG | 0.308690 | 1_2:-880349 | Msa0048550:intron |
| CTTCCAAGTTTGACCCTAAA+GGG | 0.311001 | 1_2:+878729 | None:intergenic |
| TGAGAAATGAAGAAGAAATT+GGG | 0.319935 | 1_2:+880987 | None:intergenic |
| CTCTGAAGATTCCGACAAAA+AGG | 0.323148 | 1_2:-880847 | Msa0048550:intron |
| GTCAAAACAGCCATCTGATT+AGG | 0.323162 | 1_2:-878798 | Msa0048550:exon |
| TGCGGACCAGATTCATCTTC+AGG | 0.323612 | 1_2:+880011 | None:intergenic |
| TTTGTGTTCCTATTGTTTAT+GGG | 0.329826 | 1_2:-880713 | Msa0048550:CDS |
| AATTGGGGATTTAGGGTTTA+GGG | 0.342091 | 1_2:+881003 | None:intergenic |
| AGAAGAATAGACATGGTTCT+TGG | 0.350504 | 1_2:-878606 | Msa0048550:three_prime_UTR |
| GCGAAGACAATTAACTTTGT+TGG | 0.360143 | 1_2:-878834 | Msa0048550:CDS |
| TGAGATATCTGAATGTGGTT+GGG | 0.370519 | 1_2:-880210 | Msa0048550:CDS |
| TGTTGTTGTTCCTAAGCTTC+CGG | 0.377160 | 1_2:-879892 | Msa0048550:CDS |
| CCTCTCCCCTTGTCATTCAT+AGG | 0.378226 | 1_2:+879732 | None:intergenic |
| GTGATTCAACAACTCTTGTT+GGG | 0.380529 | 1_2:+880240 | None:intergenic |
| CGTCTGCCTCTGAGAAGTTC+AGG | 0.383496 | 1_2:+879676 | None:intergenic |
| CTGTGTAGAAGCCAGTTGTT+TGG | 0.386903 | 1_2:-878635 | Msa0048550:three_prime_UTR |
| TCAAAACAGCCATCTGATTA+GGG | 0.394516 | 1_2:-878797 | Msa0048550:exon |
| TCTTCCAAGTTTGACCCTAA+AGG | 0.402244 | 1_2:+878728 | None:intergenic |
| GGTGATTCAACAACTCTTGT+TGG | 0.404893 | 1_2:+880239 | None:intergenic |
| ATCTTAGCGCTGTTGTTAAG+AGG | 0.408823 | 1_2:-880295 | Msa0048550:CDS |
| CTTCTAAACCTCCAAACAAC+TGG | 0.411904 | 1_2:+878624 | None:intergenic |
| GCAATAGTCCCATAAACAAT+AGG | 0.416181 | 1_2:+880705 | None:intergenic |
| AGAAAAGCCTCAGAAGGTTC+AGG | 0.431687 | 1_2:+879939 | None:intergenic |
| ACTAGCGGCCGCTCGCCAAC+AGG | 0.433354 | 1_2:-879643 | Msa0048550:intron |
| GATTGTGATCAAGAGGGTTA+AGG | 0.439714 | 1_2:-880745 | Msa0048550:CDS |
| TGGCTTGAATTTACCAAGCC+CGG | 0.441883 | 1_2:-879868 | Msa0048550:CDS |
| CCACATTCAGATATCTCAAA+AGG | 0.442736 | 1_2:+880215 | None:intergenic |
| AATATATCCAAAACAATCTA+CGG | 0.450829 | 1_2:+878663 | None:intergenic |
| AAAAGGAATGTACCCGGGCT+TGG | 0.452777 | 1_2:+879855 | None:intergenic |
| ACGTTTGAGATTGAGACATT+TGG | 0.453924 | 1_2:+880955 | None:intergenic |
| TTGTAAGATTCAATGACAAC+AGG | 0.457288 | 1_2:+879975 | None:intergenic |
| CACATTCAGATATCTCAAAA+GGG | 0.460624 | 1_2:+880216 | None:intergenic |
| GTGGCTCAGTGGATGATCTT+TGG | 0.461147 | 1_2:+879704 | None:intergenic |
| CTTGTTGGGTTGTTGAAACT+AGG | 0.464463 | 1_2:+880254 | None:intergenic |
| TTCAAGCCATCCGGAAGCTT+AGG | 0.466794 | 1_2:+879882 | None:intergenic |
| TGTAGAAGCCAGTTGTTTGG+AGG | 0.475320 | 1_2:-878632 | Msa0048550:three_prime_UTR |
| TTGTATCCTGAAGATGAATC+TGG | 0.476586 | 1_2:-880017 | Msa0048550:CDS |
| TTGAGATATCTGAATGTGGT+TGG | 0.489346 | 1_2:-880211 | Msa0048550:CDS |
| ATATATCCAAAACAATCTAC+GGG | 0.499169 | 1_2:+878664 | None:intergenic |
| GAGATATCTGAATGTGGTTG+GGG | 0.508033 | 1_2:-880209 | Msa0048550:CDS |
| TCATCTTGCTGTCTCTTGAG+TGG | 0.510191 | 1_2:+880930 | None:intergenic |
| TTTCCCTTTAGGGTCAAACT+TGG | 0.511163 | 1_2:-878732 | Msa0048550:three_prime_UTR |
| GAGAAATGAAGAAGAAATTG+GGG | 0.514160 | 1_2:+880988 | None:intergenic |
| AGACAATTAACTTTGTTGGA+AGG | 0.518481 | 1_2:-878830 | Msa0048550:CDS |
| CTTGGTAAATTCAAGCCATC+CGG | 0.524197 | 1_2:+879873 | None:intergenic |
| AAGATCATCCACTGAGCCAC+TGG | 0.526941 | 1_2:-879701 | Msa0048550:CDS |
| AGCTTAGGAACAACAACAGC+AGG | 0.539488 | 1_2:+879897 | None:intergenic |
| TCTTAGCGCTGTTGTTAAGA+GGG | 0.547459 | 1_2:-880294 | Msa0048550:CDS |
| CCTATGAATGACAAGGGGAG+AGG | 0.556014 | 1_2:-879732 | Msa0048550:CDS |
| TGTGCGTGGAGCTTCTAATG+AGG | 0.563078 | 1_2:-880318 | Msa0048550:CDS |
| TTGTCATTCATAGGTTCGAC+CGG | 0.563658 | 1_2:+879741 | None:intergenic |
| GGCTTGAATTTACCAAGCCC+GGG | 0.565243 | 1_2:-879867 | Msa0048550:intron |
| CATGTACATCCCTAATCAGA+TGG | 0.565284 | 1_2:+878788 | None:intergenic |
| TGGTTCAGATTGTGATCAAG+AGG | 0.565288 | 1_2:-880752 | Msa0048550:intron |
| ACAGGTTTCTTTGTATTCTG+CGG | 0.567258 | 1_2:+879993 | None:intergenic |
| GTTGTTCCTAAGCTTCCGGA+TGG | 0.569025 | 1_2:-879888 | Msa0048550:CDS |
| ACGAGTAGGTTTGATAGCAG+AGG | 0.604802 | 1_2:+880887 | None:intergenic |
| AAATGGACTGTTTATGTGCG+TGG | 0.607530 | 1_2:-880332 | Msa0048550:CDS |
| TTCAGGAACCAGTGGCTCAG+TGG | 0.609060 | 1_2:+879693 | None:intergenic |
| GGTTCAGATTGTGATCAAGA+GGG | 0.613238 | 1_2:-880751 | Msa0048550:intron |
| GCAGAGGAATCATCATCAGT+GGG | 0.613682 | 1_2:+880903 | None:intergenic |
| CTGAGAAGTTCAGGAACCAG+TGG | 0.616400 | 1_2:+879685 | None:intergenic |
| AGCAGAGGAATCATCATCAG+TGG | 0.616651 | 1_2:+880902 | None:intergenic |
| ATGCAGAACCTGTTGGCGAG+CGG | 0.618917 | 1_2:+879635 | None:intergenic |
| CGTGCGAGAAAAGCCTCAGA+AGG | 0.629363 | 1_2:+879933 | None:intergenic |
| GGTCGAACCTATGAATGACA+AGG | 0.642634 | 1_2:-879739 | Msa0048550:CDS |
| GTCGAACCTATGAATGACAA+GGG | 0.645605 | 1_2:-879738 | Msa0048550:CDS |
| ACATTCAGATATCTCAAAAG+GGG | 0.650798 | 1_2:+880217 | None:intergenic |
| GAGGTTTAGAAGAATAGACA+TGG | 0.671266 | 1_2:-878613 | Msa0048550:three_prime_UTR |
| TGTCATTGAATCTTACAATG+AGG | 0.676551 | 1_2:-879970 | Msa0048550:CDS |
| CTGGTTCCTGAACTTCTCAG+AGG | 0.682622 | 1_2:-879682 | Msa0048550:CDS |
| CATTCAGATATCTCAAAAGG+GGG | 0.698972 | 1_2:+880218 | None:intergenic |
| TCGAACCTATGAATGACAAG+GGG | 0.714166 | 1_2:-879737 | Msa0048550:CDS |
| AGACGAGCTCTTAAAACTAG+CGG | 0.761110 | 1_2:-879658 | Msa0048550:CDS |
| TATATCCAAAACAATCTACG+GGG | 0.771191 | 1_2:+878665 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTATTCTTCATTATT+TGG | - | chr1_2:878815-878834 | Msa0048550:CDS | 10.0% |
| !!! | TTTAATAAAGATTGTATTTT+TGG | - | chr1_2:878840-878859 | Msa0048550:CDS | 10.0% |
| !!! | AAATAAATACAATCAATTTT+AGG | - | chr1_2:880147-880166 | Msa0048550:CDS | 10.0% |
| !!! | AATAAATACAATCAATTTTA+GGG | - | chr1_2:880148-880167 | Msa0048550:CDS | 10.0% |
| !!! | ATATCTTAATAGATATTTTT+TGG | - | chr1_2:880853-880872 | Msa0048550:CDS | 10.0% |
| !! | AGTATTATTGGAAATTTAAT+TGG | - | chr1_2:879149-879168 | Msa0048550:intron | 15.0% |
| !! | GTATTATTGGAAATTTAATT+GGG | - | chr1_2:879150-879169 | Msa0048550:intron | 15.0% |
| !!! | CATATAATAATGTTACTTTA+AGG | + | chr1_2:880104-880123 | None:intergenic | 15.0% |
| !!! | TTATGCCAAAATATTTTATA+TGG | - | chr1_2:881034-881053 | Msa0048550:five_prime_UTR | 15.0% |
| !!! | TATCACCATATAAAATATTT+TGG | + | chr1_2:881042-881061 | None:intergenic | 15.0% |
| !! | AAAAAGTGAAAACAGAATTA+GGG | + | chr1_2:878797-878816 | None:intergenic | 20.0% |
| !! | AAAAAAGTGAAAACAGAATT+AGG | + | chr1_2:878798-878817 | None:intergenic | 20.0% |
| !!! | TTTTTATTTTCTCAGTGTTT+TGG | - | chr1_2:878968-878987 | Msa0048550:intron | 20.0% |
| !! | TTTAATCATTTGATGTTACT+AGG | - | chr1_2:879245-879264 | Msa0048550:intron | 20.0% |
| !!! | ATAAAGAAAAGCTTTTGAAA+GGG | + | chr1_2:879825-879844 | None:intergenic | 20.0% |
| !!! | TATAAAGAAAAGCTTTTGAA+AGG | + | chr1_2:879826-879845 | None:intergenic | 20.0% |
| !!! | TATGCATTTTCTATTTGAAT+AGG | - | chr1_2:880012-880031 | Msa0048550:CDS | 20.0% |
| !! | AACATTATTATATGCAGTTA+TGG | - | chr1_2:880110-880129 | Msa0048550:intron | 20.0% |
| !! | ACATTATTATATGCAGTTAT+GGG | - | chr1_2:880111-880130 | Msa0048550:intron | 20.0% |
| !! | ACAAATACAAAAAGCAAAAA+AGG | + | chr1_2:880430-880449 | None:intergenic | 20.0% |
| !! | AAAAACAAACTAATCCATTA+AGG | + | chr1_2:880501-880520 | None:intergenic | 20.0% |
| !! | TGCAAAACAAATAAAACATT+CGG | + | chr1_2:880528-880547 | None:intergenic | 20.0% |
| !!! | TCTTAATAGATATTTTTTGG+AGG | - | chr1_2:880856-880875 | Msa0048550:CDS | 20.0% |
| !! | AATATATCCAAAACAATCTA+CGG | + | chr1_2:880952-880971 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTTGATTCCTTAG+TGG | + | chr1_2:878524-878543 | None:intergenic | 25.0% |
| ! | TGAGAAATGAAGAAGAAATT+GGG | + | chr1_2:878628-878647 | None:intergenic | 25.0% |
| ! | TTGAGAAATGAAGAAGAAAT+TGG | + | chr1_2:878629-878648 | None:intergenic | 25.0% |
| ! | ATTTGTGTTCCTATTGTTTA+TGG | - | chr1_2:878898-878917 | Msa0048550:intron | 25.0% |
| ! | TTTGTGTTCCTATTGTTTAT+GGG | - | chr1_2:878899-878918 | Msa0048550:intron | 25.0% |
| !!! | TGACTTTTGTTTGTTTTCAT+AGG | - | chr1_2:879557-879576 | Msa0048550:intron | 25.0% |
| ! | ACAATCGAAAAATCACTAAA+AGG | + | chr1_2:879777-879796 | None:intergenic | 25.0% |
| !!! | TAAAGAAAAGCTTTTGAAAG+GGG | + | chr1_2:879824-879843 | None:intergenic | 25.0% |
| ! | CATTATTATATGCAGTTATG+GGG | - | chr1_2:880112-880131 | Msa0048550:intron | 25.0% |
| ! | ATCTTGATTAATTGCACATT+AGG | + | chr1_2:880295-880314 | None:intergenic | 25.0% |
| !!! | ATGTTTTATTTGTTTTGCAC+TGG | - | chr1_2:880529-880548 | Msa0048550:intron | 25.0% |
| !!! | ATGTTTTATTTGTTTTGCAC+TGG | - | chr1_2:880529-880548 | Msa0048550:intron | 25.0% |
| ! | ATATATCCAAAACAATCTAC+GGG | + | chr1_2:880951-880970 | None:intergenic | 25.0% |
| AAGAAGAAATTGGGGATTTA+GGG | + | chr1_2:878619-878638 | None:intergenic | 30.0% | |
| GAGAAATGAAGAAGAAATTG+GGG | + | chr1_2:878627-878646 | None:intergenic | 30.0% | |
| !!! | AATGAAATTTTGAGACGAGT+AGG | + | chr1_2:878742-878761 | None:intergenic | 30.0% |
| ! | TAGGGTTTTTACCTTTTTGT+CGG | + | chr1_2:878779-878798 | None:intergenic | 30.0% |
| TTTAGATTGAAGACCCAATT+TGG | - | chr1_2:879000-879019 | Msa0048550:intron | 30.0% | |
| TCTCGATTATGAAAATGTCA+AGG | - | chr1_2:879117-879136 | Msa0048550:intron | 30.0% | |
| ATTATGAAAATGTCAAGGAC+TGG | - | chr1_2:879122-879141 | Msa0048550:intron | 30.0% | |
| ACATTCAGATATCTCAAAAG+GGG | + | chr1_2:879398-879417 | None:intergenic | 30.0% | |
| CACATTCAGATATCTCAAAA+GGG | + | chr1_2:879399-879418 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTTGACTCGTTACT+TGG | - | chr1_2:879517-879536 | Msa0048550:intron | 30.0% |
| TTGTAAGATTCAATGACAAC+AGG | + | chr1_2:879640-879659 | None:intergenic | 30.0% | |
| TGTCATTGAATCTTACAATG+AGG | - | chr1_2:879642-879661 | Msa0048550:intron | 30.0% | |
| TTCTTTATAATCCCTTCTGT+TGG | - | chr1_2:879837-879856 | Msa0048550:intron | 30.0% | |
| TATGACTAGAGAATTGTTAG+CGG | - | chr1_2:880041-880060 | Msa0048550:intron | 30.0% | |
| ! | TATTGGCTAGTGAAACTTAT+TGG | - | chr1_2:880383-880402 | Msa0048550:intron | 30.0% |
| !!! | TTATTTGTTTTGCACTGGTT+TGG | - | chr1_2:880534-880553 | Msa0048550:intron | 30.0% |
| !!! | TTATTTGTTTTGCACTGGTT+TGG | - | chr1_2:880534-880553 | Msa0048550:intron | 30.0% |
| !! | AAAGGAAACAGTTGATTTTG+TGG | + | chr1_2:880609-880628 | None:intergenic | 30.0% |
| ATGTGGATTTCTCTTAATTG+TGG | - | chr1_2:880635-880654 | Msa0048550:intron | 30.0% | |
| AGACAATTAACTTTGTTGGA+AGG | - | chr1_2:880782-880801 | Msa0048550:intron | 30.0% | |
| TATATCCAAAACAATCTACG+GGG | + | chr1_2:880950-880969 | None:intergenic | 30.0% | |
| !!! | TAGGGTTTTGGAGAGAAATT+GGG | + | chr1_2:878594-878613 | None:intergenic | 35.0% |
| !!! | TTAGGGTTTTGGAGAGAAAT+TGG | + | chr1_2:878595-878614 | None:intergenic | 35.0% |
| ! | AATTGGGGATTTAGGGTTTA+GGG | + | chr1_2:878612-878631 | None:intergenic | 35.0% |
| ! | AAATTGGGGATTTAGGGTTT+AGG | + | chr1_2:878613-878632 | None:intergenic | 35.0% |
| GAAGAAGAAATTGGGGATTT+AGG | + | chr1_2:878620-878639 | None:intergenic | 35.0% | |
| ! | ACGTTTGAGATTGAGACATT+TGG | + | chr1_2:878660-878679 | None:intergenic | 35.0% |
| GCAATAGTCCCATAAACAAT+AGG | + | chr1_2:878910-878929 | None:intergenic | 35.0% | |
| ! | TGGGACTATTGCATTTTATC+TGG | - | chr1_2:878918-878937 | Msa0048550:intron | 35.0% |
| ! | GGGACTATTGCATTTTATCT+GGG | - | chr1_2:878919-878938 | Msa0048550:intron | 35.0% |
| ! | CTATTGCATTTTATCTGGGT+AGG | - | chr1_2:878923-878942 | Msa0048550:intron | 35.0% |
| AAATTGCAAGGGACCAAATT+GGG | + | chr1_2:879016-879035 | None:intergenic | 35.0% | |
| AAAATTGCAAGGGACCAAAT+TGG | + | chr1_2:879017-879036 | None:intergenic | 35.0% | |
| ! | AATTTTCTCGCAGCTCAATT+TGG | - | chr1_2:879031-879050 | Msa0048550:intron | 35.0% |
| ACATCTGTTATAATGAGCCA+GGG | + | chr1_2:879088-879107 | None:intergenic | 35.0% | |
| AACATCTGTTATAATGAGCC+AGG | + | chr1_2:879089-879108 | None:intergenic | 35.0% | |
| !! | AGGACTGGTTTGAGTATTAT+TGG | - | chr1_2:879137-879156 | Msa0048550:intron | 35.0% |
| AAAATTGTGAGGGACCAAAT+TGG | - | chr1_2:879180-879199 | Msa0048550:intron | 35.0% | |
| AAATTGTGAGGGACCAAATT+GGG | - | chr1_2:879181-879200 | Msa0048550:intron | 35.0% | |
| TCAAGAGTAAAGACCCAATT+TGG | + | chr1_2:879197-879216 | None:intergenic | 35.0% | |
| CTAGGTCTCAATCTCATAAA+TGG | - | chr1_2:879263-879282 | Msa0048550:intron | 35.0% | |
| GTGATTCAACAACTCTTGTT+GGG | + | chr1_2:879375-879394 | None:intergenic | 35.0% | |
| CATTCAGATATCTCAAAAGG+GGG | + | chr1_2:879397-879416 | None:intergenic | 35.0% | |
| CCACATTCAGATATCTCAAA+AGG | + | chr1_2:879400-879419 | None:intergenic | 35.0% | |
| !!! | CCTTTTGAGATATCTGAATG+TGG | - | chr1_2:879397-879416 | Msa0048550:intron | 35.0% |
| TTGAGATATCTGAATGTGGT+TGG | - | chr1_2:879401-879420 | Msa0048550:intron | 35.0% | |
| TGAGATATCTGAATGTGGTT+GGG | - | chr1_2:879402-879421 | Msa0048550:intron | 35.0% | |
| TTGTATCCTGAAGATGAATC+TGG | - | chr1_2:879595-879614 | Msa0048550:intron | 35.0% | |
| ACAGGTTTCTTTGTATTCTG+CGG | + | chr1_2:879622-879641 | None:intergenic | 35.0% | |
| ATCACTAAAAGGAATGTACC+CGG | + | chr1_2:879766-879785 | None:intergenic | 35.0% | |
| CAATCAGTATTGTCAATTGC+AGG | + | chr1_2:880257-880276 | None:intergenic | 35.0% | |
| TGCACATTAGGAATGAATCA+GGG | + | chr1_2:880283-880302 | None:intergenic | 35.0% | |
| TTGCACATTAGGAATGAATC+AGG | + | chr1_2:880284-880303 | None:intergenic | 35.0% | |
| !!! | GATGTCGAAGAGTGTTTTAT+TGG | - | chr1_2:880366-880385 | Msa0048550:intron | 35.0% |
| !!! | CTTCTTGTTTTTAGTGTACG+AGG | - | chr1_2:880457-880476 | Msa0048550:intron | 35.0% |
| TAAGGTTCACCATCCAATAA+AGG | + | chr1_2:880483-880502 | None:intergenic | 35.0% | |
| TATTGGATGGTGAACCTTAA+TGG | - | chr1_2:880484-880503 | Msa0048550:intron | 35.0% | |
| AACTGTGTTTGCAATGTCTT+AGG | - | chr1_2:880733-880752 | Msa0048550:CDS | 35.0% | |
| GCGAAGACAATTAACTTTGT+TGG | - | chr1_2:880778-880797 | Msa0048550:intron | 35.0% | |
| TCAAAACAGCCATCTGATTA+GGG | - | chr1_2:880815-880834 | Msa0048550:intron | 35.0% | |
| !! | TTTTTGGAGGATTTCCCTTT+AGG | - | chr1_2:880869-880888 | Msa0048550:CDS | 35.0% |
| !! | TTTTGGAGGATTTCCCTTTA+GGG | - | chr1_2:880870-880889 | Msa0048550:CDS | 35.0% |
| GAGGTTTAGAAGAATAGACA+TGG | - | chr1_2:880999-881018 | Msa0048550:five_prime_UTR | 35.0% | |
| AGAAGAATAGACATGGTTCT+TGG | - | chr1_2:881006-881025 | Msa0048550:five_prime_UTR | 35.0% | |
| !! | GGATTTAGGGTTTAGGGTTT+TGG | + | chr1_2:878606-878625 | None:intergenic | 40.0% |
| ! | CTTTTTGTCGGAATCTTCAG+AGG | + | chr1_2:878767-878786 | None:intergenic | 40.0% |
| ! | CTCTGAAGATTCCGACAAAA+AGG | - | chr1_2:878765-878784 | Msa0048550:three_prime_UTR | 40.0% |
| TGGTTCAGATTGTGATCAAG+AGG | - | chr1_2:878860-878879 | Msa0048550:CDS | 40.0% | |
| GGTTCAGATTGTGATCAAGA+GGG | - | chr1_2:878861-878880 | Msa0048550:intron | 40.0% | |
| GATTGTGATCAAGAGGGTTA+AGG | - | chr1_2:878867-878886 | Msa0048550:intron | 40.0% | |
| ! | TGCATTTTATCTGGGTAGGA+AGG | - | chr1_2:878927-878946 | Msa0048550:intron | 40.0% |
| TCTCCGGCAAAAAATTAGTC+CGG | - | chr1_2:879054-879073 | Msa0048550:intron | 40.0% | |
| !! | AAATGGACTGTTTATGTGCG+TGG | - | chr1_2:879280-879299 | Msa0048550:intron | 40.0% |
| ATCTTAGCGCTGTTGTTAAG+AGG | - | chr1_2:879317-879336 | Msa0048550:intron | 40.0% | |
| TCTTAGCGCTGTTGTTAAGA+GGG | - | chr1_2:879318-879337 | Msa0048550:intron | 40.0% | |
| ! | CTTGTTGGGTTGTTGAAACT+AGG | + | chr1_2:879361-879380 | None:intergenic | 40.0% |
| GGTGATTCAACAACTCTTGT+TGG | + | chr1_2:879376-879395 | None:intergenic | 40.0% | |
| GAGATATCTGAATGTGGTTG+GGG | - | chr1_2:879403-879422 | Msa0048550:intron | 40.0% | |
| TGATGCCTGTGAAAAACAGT+TGG | - | chr1_2:879462-879481 | Msa0048550:intron | 40.0% | |
| !! | CAGATCCAACTGTTTTTCAC+AGG | + | chr1_2:879470-879489 | None:intergenic | 40.0% |
| ACAGTTGGATCTGTAAGCTT+CGG | - | chr1_2:879477-879496 | Msa0048550:intron | 40.0% | |
| ! | TGTTTTTCCTGAACCTTCTG+AGG | - | chr1_2:879666-879685 | Msa0048550:CDS | 40.0% |
| ! | TGTTGTTGTTCCTAAGCTTC+CGG | - | chr1_2:879720-879739 | Msa0048550:CDS | 40.0% |
| CTTGGTAAATTCAAGCCATC+CGG | + | chr1_2:879742-879761 | None:intergenic | 40.0% | |
| TCACTAAAAGGAATGTACCC+GGG | + | chr1_2:879765-879784 | None:intergenic | 40.0% | |
| TACTGCAGAAACCAACAGAA+GGG | + | chr1_2:879851-879870 | None:intergenic | 40.0% | |
| TTGTCATTCATAGGTTCGAC+CGG | + | chr1_2:879874-879893 | None:intergenic | 40.0% | |
| GTCGAACCTATGAATGACAA+GGG | - | chr1_2:879874-879893 | Msa0048550:CDS | 40.0% | |
| TCGAACCTATGAATGACAAG+GGG | - | chr1_2:879875-879894 | Msa0048550:CDS | 40.0% | |
| AGACGAGCTCTTAAAACTAG+CGG | - | chr1_2:879954-879973 | Msa0048550:CDS | 40.0% | |
| GTGCTATAGCATTGTTGCAT+AGG | - | chr1_2:880201-880220 | Msa0048550:CDS | 40.0% | |
| TTAGTGTACGAGGCCTTTAT+TGG | - | chr1_2:880467-880486 | Msa0048550:intron | 40.0% | |
| AGAAATCCACATGTGCACAA+AGG | + | chr1_2:880627-880646 | None:intergenic | 40.0% | |
| GTCAAAACAGCCATCTGATT+AGG | - | chr1_2:880814-880833 | Msa0048550:intron | 40.0% | |
| CATGTACATCCCTAATCAGA+TGG | + | chr1_2:880827-880846 | None:intergenic | 40.0% | |
| !! | TTTCCCTTTAGGGTCAAACT+TGG | - | chr1_2:880880-880899 | Msa0048550:CDS | 40.0% |
| CTTCCAAGTTTGACCCTAAA+GGG | + | chr1_2:880886-880905 | None:intergenic | 40.0% | |
| TCTTCCAAGTTTGACCCTAA+AGG | + | chr1_2:880887-880906 | None:intergenic | 40.0% | |
| ! | ATCTTCCCCGTAGATTGTTT+TGG | - | chr1_2:880942-880961 | Msa0048550:CDS | 40.0% |
| CTTCTAAACCTCCAAACAAC+TGG | + | chr1_2:880991-881010 | None:intergenic | 40.0% | |
| ! | TCATCTTGCTGTCTCTTGAG+TGG | + | chr1_2:878685-878704 | None:intergenic | 45.0% |
| GCAGAGGAATCATCATCAGT+GGG | + | chr1_2:878712-878731 | None:intergenic | 45.0% | |
| AGCAGAGGAATCATCATCAG+TGG | + | chr1_2:878713-878732 | None:intergenic | 45.0% | |
| ! | ACGAGTAGGTTTGATAGCAG+AGG | + | chr1_2:878728-878747 | None:intergenic | 45.0% |
| GAGCTGCGAGAAAATTGCAA+GGG | + | chr1_2:879027-879046 | None:intergenic | 45.0% | |
| TGAGCTGCGAGAAAATTGCA+AGG | + | chr1_2:879028-879047 | None:intergenic | 45.0% | |
| CTCCGGCAAAAAATTAGTCC+GGG | - | chr1_2:879055-879074 | Msa0048550:intron | 45.0% | |
| TCCGGCAAAAAATTAGTCCG+GGG | - | chr1_2:879056-879075 | Msa0048550:intron | 45.0% | |
| !!! | TCCCCGGACTAATTTTTTGC+CGG | + | chr1_2:879060-879079 | None:intergenic | 45.0% |
| TGGGTCACGAGAAAATTGTG+AGG | - | chr1_2:879169-879188 | Msa0048550:intron | 45.0% | |
| GGGTCACGAGAAAATTGTGA+GGG | - | chr1_2:879170-879189 | Msa0048550:intron | 45.0% | |
| ! | GTTTTTCACAGGCATCACTG+TGG | + | chr1_2:879459-879478 | None:intergenic | 45.0% |
| AGAAAAGCCTCAGAAGGTTC+AGG | + | chr1_2:879676-879695 | None:intergenic | 45.0% | |
| AGCTTAGGAACAACAACAGC+AGG | + | chr1_2:879718-879737 | None:intergenic | 45.0% | |
| TGGCTTGAATTTACCAAGCC+CGG | - | chr1_2:879744-879763 | Msa0048550:CDS | 45.0% | |
| GTACTGCAGAAACCAACAGA+AGG | + | chr1_2:879852-879871 | None:intergenic | 45.0% | |
| !! | TCTGTTGGTTTCTGCAGTAC+CGG | - | chr1_2:879852-879871 | Msa0048550:intron | 45.0% |
| GGTCGAACCTATGAATGACA+AGG | - | chr1_2:879873-879892 | Msa0048550:CDS | 45.0% | |
| ACAAAGCATGCAGAACCTGT+TGG | + | chr1_2:879987-880006 | None:intergenic | 45.0% | |
| TTGCAGGTCGCAGAAAATAG+TGG | + | chr1_2:880241-880260 | None:intergenic | 45.0% | |
| TGTACGAGGCCTTTATTGGA+TGG | - | chr1_2:880471-880490 | Msa0048550:intron | 45.0% | |
| CTGTTTCCTTTGTGCACATG+TGG | - | chr1_2:880618-880637 | Msa0048550:intron | 45.0% | |
| !!! | TCAGATGGCTGTTTTGACTG+AGG | + | chr1_2:880812-880831 | None:intergenic | 45.0% |
| CTGTGTAGAAGCCAGTTGTT+TGG | - | chr1_2:880977-880996 | Msa0048550:five_prime_UTR | 45.0% | |
| TGTAGAAGCCAGTTGTTTGG+AGG | - | chr1_2:880980-880999 | Msa0048550:five_prime_UTR | 45.0% | |
| TCGCAGCTCAATTTGGTCTC+CGG | - | chr1_2:879038-879057 | Msa0048550:intron | 50.0% | |
| TGTGCGTGGAGCTTCTAATG+AGG | - | chr1_2:879294-879313 | Msa0048550:intron | 50.0% | |
| TGCGGACCAGATTCATCTTC+AGG | + | chr1_2:879604-879623 | None:intergenic | 50.0% | |
| GTTGTTCCTAAGCTTCCGGA+TGG | - | chr1_2:879724-879743 | Msa0048550:CDS | 50.0% | |
| TTCAAGCCATCCGGAAGCTT+AGG | + | chr1_2:879733-879752 | None:intergenic | 50.0% | |
| GGCTTGAATTTACCAAGCCC+GGG | - | chr1_2:879745-879764 | Msa0048550:CDS | 50.0% | |
| AAAAGGAATGTACCCGGGCT+TGG | + | chr1_2:879760-879779 | None:intergenic | 50.0% | |
| CCTCTCCCCTTGTCATTCAT+AGG | + | chr1_2:879883-879902 | None:intergenic | 50.0% | |
| CCTATGAATGACAAGGGGAG+AGG | - | chr1_2:879880-879899 | Msa0048550:CDS | 50.0% | |
| GTGGCTCAGTGGATGATCTT+TGG | + | chr1_2:879911-879930 | None:intergenic | 50.0% | |
| AAGATCATCCACTGAGCCAC+TGG | - | chr1_2:879911-879930 | Msa0048550:CDS | 50.0% | |
| CTGAGAAGTTCAGGAACCAG+TGG | + | chr1_2:879930-879949 | None:intergenic | 50.0% | |
| CTGGTTCCTGAACTTCTCAG+AGG | - | chr1_2:879930-879949 | Msa0048550:CDS | 50.0% | |
| CGTGCGAGAAAAGCCTCAGA+AGG | + | chr1_2:879682-879701 | None:intergenic | 55.0% | |
| TTCAGGAACCAGTGGCTCAG+TGG | + | chr1_2:879922-879941 | None:intergenic | 55.0% | |
| ! | CGTCTGCCTCTGAGAAGTTC+AGG | + | chr1_2:879939-879958 | None:intergenic | 55.0% |
| ATGCAGAACCTGTTGGCGAG+CGG | + | chr1_2:879980-879999 | None:intergenic | 55.0% | |
| TTAGTCCGGGGACAAGTCCC+TGG | - | chr1_2:879068-879087 | Msa0048550:intron | 60.0% | |
| ATGAGCCAGGGACTTGTCCC+CGG | + | chr1_2:879076-879095 | None:intergenic | 60.0% | |
| ACTAGCGGCCGCTCGCCAAC+AGG | - | chr1_2:879969-879988 | Msa0048550:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 878512 | 881122 | 878512 | ID=Msa0048550;Name=Msa0048550 |
| chr1_2 | mRNA | 878512 | 881122 | 878512 | ID=Msa0048550-mRNA-1;Parent=Msa0048550;Name=Msa0048550-mRNA-1;_AED=0.10;_eAED=0.10;_QI=149|1|1|1|1|1|6|287|275 |
| chr1_2 | exon | 878512 | 878879 | 878512 | ID=Msa0048550-mRNA-1:exon:224;Parent=Msa0048550-mRNA-1 |
| chr1_2 | exon | 879644 | 879765 | 879644 | ID=Msa0048550-mRNA-1:exon:223;Parent=Msa0048550-mRNA-1 |
| chr1_2 | exon | 879868 | 880055 | 879868 | ID=Msa0048550-mRNA-1:exon:222;Parent=Msa0048550-mRNA-1 |
| chr1_2 | exon | 880146 | 880367 | 880146 | ID=Msa0048550-mRNA-1:exon:221;Parent=Msa0048550-mRNA-1 |
| chr1_2 | exon | 880678 | 880766 | 880678 | ID=Msa0048550-mRNA-1:exon:220;Parent=Msa0048550-mRNA-1 |
| chr1_2 | exon | 880848 | 881122 | 880848 | ID=Msa0048550-mRNA-1:exon:219;Parent=Msa0048550-mRNA-1 |
| chr1_2 | five_prime_UTR | 880974 | 881122 | 880974 | ID=Msa0048550-mRNA-1:five_prime_utr;Parent=Msa0048550-mRNA-1 |
| chr1_2 | CDS | 880848 | 880973 | 880848 | ID=Msa0048550-mRNA-1:cds;Parent=Msa0048550-mRNA-1 |
| chr1_2 | CDS | 880678 | 880766 | 880678 | ID=Msa0048550-mRNA-1:cds;Parent=Msa0048550-mRNA-1 |
| chr1_2 | CDS | 880146 | 880367 | 880146 | ID=Msa0048550-mRNA-1:cds;Parent=Msa0048550-mRNA-1 |
| chr1_2 | CDS | 879868 | 880055 | 879868 | ID=Msa0048550-mRNA-1:cds;Parent=Msa0048550-mRNA-1 |
| chr1_2 | CDS | 879644 | 879765 | 879644 | ID=Msa0048550-mRNA-1:cds;Parent=Msa0048550-mRNA-1 |
| chr1_2 | CDS | 878799 | 878879 | 878799 | ID=Msa0048550-mRNA-1:cds;Parent=Msa0048550-mRNA-1 |
| chr1_2 | three_prime_UTR | 878512 | 878798 | 878512 | ID=Msa0048550-mRNA-1:three_prime_utr;Parent=Msa0048550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
