Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0754380 | XP_003612162.1 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 542 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0754380 | sp|Q9FH40|TA14B_ARATH | 66.284 | 261 | 80 | 2 | 10 | 270 | 9 | 261 | 4.97e-128 | 367 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0754380 | G7JW72 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 542 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0030200 | Msa0754380 | 0.803516 | 3.358676e-49 | -8.615850e-47 |
Msa0033950 | Msa0754380 | 0.845360 | 4.264766e-59 | -8.615850e-47 |
Msa0034030 | Msa0754380 | 0.839038 | 2.011985e-57 | -8.615850e-47 |
Msa0043660 | Msa0754380 | 0.811281 | 7.571423e-51 | -8.615850e-47 |
Msa0048550 | Msa0754380 | 0.986491 | 5.768281e-167 | -8.615850e-47 |
Msa0054480 | Msa0754380 | 0.801642 | 8.178000e-49 | -8.615850e-47 |
Msa0061080 | Msa0754380 | 0.803251 | 3.810340e-49 | -8.615850e-47 |
Msa0070700 | Msa0754380 | 0.824168 | 9.342900e-54 | -8.615850e-47 |
Msa0075500 | Msa0754380 | 0.810113 | 1.354712e-50 | -8.615850e-47 |
Msa0105620 | Msa0754380 | 0.820666 | 6.079259e-53 | -8.615850e-47 |
Msa0115400 | Msa0754380 | 0.811109 | 8.250664e-51 | -8.615850e-47 |
Msa0118590 | Msa0754380 | 0.807446 | 5.035294e-50 | -8.615850e-47 |
Msa0660490 | Msa0754380 | 0.826554 | 2.545125e-54 | -8.615850e-47 |
Msa0660850 | Msa0754380 | 0.805464 | 1.318029e-49 | -8.615850e-47 |
Msa0685140 | Msa0754380 | 0.817723 | 2.844238e-52 | -8.615850e-47 |
Msa0689260 | Msa0754380 | 0.832144 | 1.117953e-55 | -8.615850e-47 |
Msa0692830 | Msa0754380 | 0.800049 | 1.729414e-48 | -8.615850e-47 |
Msa0711780 | Msa0754380 | 0.810477 | 1.130526e-50 | -8.615850e-47 |
Msa0715700 | Msa0754380 | 0.833376 | 5.526099e-56 | -8.615850e-47 |
Msa0754380 | Msa0757940 | 0.804642 | 1.958682e-49 | -8.615850e-47 |
Msa0754380 | Msa0763330 | 0.816054 | 6.738758e-52 | -8.615850e-47 |
Msa0754380 | Msa0793800 | 0.811410 | 7.099785e-51 | -8.615850e-47 |
Msa0754380 | Msa0799260 | 0.816812 | 4.559220e-52 | -8.615850e-47 |
Msa0754380 | Msa0799310 | 0.812374 | 4.378786e-51 | -8.615850e-47 |
Msa0754380 | Msa0799940 | 0.896263 | 4.361342e-76 | -8.615850e-47 |
Msa0754380 | Msa0945440 | 0.820366 | 7.123746e-53 | -8.615850e-47 |
Msa0754380 | Msa1009820 | 0.815545 | 8.750535e-52 | -8.615850e-47 |
Msa0754380 | Msa1051200 | 0.824015 | 1.014923e-53 | -8.615850e-47 |
Msa0754380 | Msa1128570 | 0.815849 | 7.488541e-52 | -8.615850e-47 |
Msa0754380 | Msa1137700 | 0.818847 | 1.583054e-52 | -8.615850e-47 |
Msa0754380 | Msa1153060 | 0.858050 | 1.074939e-62 | -8.615850e-47 |
Msa0754380 | Msa1160590 | 0.822314 | 2.530551e-53 | -8.615850e-47 |
Msa0754380 | Msa1174470 | 0.818298 | 2.108108e-52 | -8.615850e-47 |
Msa0754380 | Msa1209260 | 0.812944 | 3.285355e-51 | -8.615850e-47 |
Msa0754380 | Msa1224810 | 0.813263 | 2.796603e-51 | -8.615850e-47 |
Msa0754380 | Msa1266990 | 0.816382 | 5.693259e-52 | -8.615850e-47 |
Msa0754380 | Msa1358250 | 0.830710 | 2.518806e-55 | -8.615850e-47 |
Msa0754380 | Msa1384190 | 0.988527 | 2.266425e-174 | -8.615850e-47 |
Msa0754380 | Msa1384880 | 0.803057 | 4.179248e-49 | -8.615850e-47 |
Msa0754380 | Msa1392780 | 0.821079 | 4.886236e-53 | -8.615850e-47 |
Msa0754380 | Msa1400220 | 0.839980 | 1.144872e-57 | -8.615850e-47 |
Msa0754380 | Msa1403420 | 0.832659 | 8.334569e-56 | -8.615850e-47 |
Msa0754380 | Msa1411750 | 0.832747 | 7.923423e-56 | -8.615850e-47 |
Msa0754380 | Msa1419870 | 0.819690 | 1.017504e-52 | -8.615850e-47 |
Msa0754380 | Msa1429120 | 0.983861 | 6.497015e-159 | -8.615850e-47 |
Msa0754380 | Msa1457920 | 0.813699 | 2.242075e-51 | -8.615850e-47 |
Msa0123360 | Msa0754380 | 0.820494 | 6.659002e-53 | -8.615850e-47 |
Msa0128050 | Msa0754380 | 0.820292 | 7.406984e-53 | -8.615850e-47 |
Msa0137550 | Msa0754380 | 0.820276 | 7.470653e-53 | -8.615850e-47 |
Msa0139350 | Msa0754380 | 0.834322 | 3.205206e-56 | -8.615850e-47 |
Msa0144370 | Msa0754380 | 0.827628 | 1.408404e-54 | -8.615850e-47 |
Msa0150820 | Msa0754380 | 0.802139 | 6.465862e-49 | -8.615850e-47 |
Msa0159170 | Msa0754380 | 0.840700 | 7.425475e-58 | -8.615850e-47 |
Msa0168230 | Msa0754380 | 0.850549 | 1.580270e-60 | -8.615850e-47 |
Msa0187120 | Msa0754380 | 0.804483 | 2.114007e-49 | -8.615850e-47 |
Msa0388700 | Msa0754380 | 0.820478 | 6.716826e-53 | -8.615850e-47 |
Msa0437360 | Msa0754380 | 0.814185 | 1.752274e-51 | -8.615850e-47 |
Msa0449210 | Msa0754380 | 0.807183 | 5.723118e-50 | -8.615850e-47 |
Msa0482130 | Msa0754380 | 0.828916 | 6.890168e-55 | -8.615850e-47 |
Msa0325590 | Msa0754380 | 0.842380 | 2.678652e-58 | -8.615850e-47 |
Msa0493410 | Msa0754380 | 0.826588 | 2.497892e-54 | -8.615850e-47 |
Msa0529830 | Msa0754380 | 0.811194 | 7.907300e-51 | -8.615850e-47 |
Msa0542090 | Msa0754380 | 0.835437 | 1.678915e-56 | -8.615850e-47 |
Msa0542130 | Msa0754380 | 0.835204 | 1.922555e-56 | -8.615850e-47 |
Msa0566100 | Msa0754380 | 0.815170 | 1.060518e-51 | -8.615850e-47 |
Msa0585510 | Msa0754380 | 0.829007 | 6.547735e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0754380 | MtrunA17_Chr5g0405361 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 542 |
Msa0754380 | MtrunA17_Chr4g0036171 | 71.308 | 237 | 66 | 1 | 36 | 272 | 32 | 266 | 2.68e-128 | 365 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0754380 | AT5G45600.2 | 66.667 | 261 | 78 | 2 | 10 | 270 | 9 | 260 | 4.72e-129 | 367 |
Msa0754380 | AT5G45600.1 | 66.284 | 261 | 80 | 2 | 10 | 270 | 9 | 261 | 5.05e-129 | 367 |
Msa0754380 | AT2G18000.2 | 63.203 | 231 | 83 | 1 | 46 | 274 | 33 | 263 | 2.85e-108 | 314 |
Msa0754380 | AT2G18000.1 | 67.879 | 165 | 51 | 1 | 46 | 208 | 33 | 197 | 7.70e-83 | 248 |
Find 83 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAGAAGAAATTGGGGATTT+AGG | 0.119714 | 5_2:-7940037 | None:intergenic |
ATTTGTGTTCCTATTGTTTA+TGG | 0.155857 | 5_2:+7940318 | Msa0754380:CDS |
GGATTTAGGGTTTAGGGTTT+TGG | 0.171824 | 5_2:-7940023 | None:intergenic |
TTGAGAAATGAAGAAGAAAT+TGG | 0.193899 | 5_2:-7940046 | None:intergenic |
TATCACCATATAAAATATTT+TGG | 0.199066 | 5_2:-7942459 | None:intergenic |
AAGAAGAAATTGGGGATTTA+GGG | 0.234618 | 5_2:-7940036 | None:intergenic |
ATCTTCCCCGTAGATTGTTT+TGG | 0.301941 | 5_2:+7942362 | Msa0754380:three_prime_UTR |
AAATTGGGGATTTAGGGTTT+AGG | 0.308547 | 5_2:-7940030 | None:intergenic |
CTAGGTCTCAATCTCATAAA+TGG | 0.308690 | 5_2:+7940683 | Msa0754380:intron |
CTTCCAAGTTTGACCCTAAA+GGG | 0.311001 | 5_2:-7942303 | None:intergenic |
TGAGAAATGAAGAAGAAATT+GGG | 0.319935 | 5_2:-7940045 | None:intergenic |
CTCTGAAGATTCCGACAAAA+AGG | 0.323148 | 5_2:+7940185 | Msa0754380:CDS |
GTCAAAACAGCCATCTGATT+AGG | 0.323162 | 5_2:+7942234 | Msa0754380:CDS |
TGCGGACCAGATTCATCTTC+AGG | 0.323612 | 5_2:-7941021 | None:intergenic |
TTTGTGTTCCTATTGTTTAT+GGG | 0.329826 | 5_2:+7940319 | Msa0754380:CDS |
AATTGGGGATTTAGGGTTTA+GGG | 0.342091 | 5_2:-7940029 | None:intergenic |
AGAAGAATAGACATGGTTCT+TGG | 0.350504 | 5_2:+7942426 | Msa0754380:three_prime_UTR |
GCGAAGACAATTAACTTTGT+TGG | 0.360143 | 5_2:+7942198 | Msa0754380:CDS |
TGAGATATCTGAATGTGGTT+GGG | 0.370519 | 5_2:+7940822 | Msa0754380:CDS |
TGTTGTTGTTCCTAAGCTTC+CGG | 0.377160 | 5_2:+7941140 | Msa0754380:CDS |
CCTCTCCCCTTGTCATTCAT+AGG | 0.378226 | 5_2:-7941300 | None:intergenic |
GTGATTCAACAACTCTTGTT+GGG | 0.380529 | 5_2:-7940792 | None:intergenic |
CGTCTGCCTCTGAGAAGTTC+AGG | 0.383496 | 5_2:-7941356 | None:intergenic |
CTGTGTAGAAGCCAGTTGTT+TGG | 0.386903 | 5_2:+7942397 | Msa0754380:three_prime_UTR |
TCAAAACAGCCATCTGATTA+GGG | 0.394516 | 5_2:+7942235 | Msa0754380:CDS |
TCTTCCAAGTTTGACCCTAA+AGG | 0.402244 | 5_2:-7942304 | None:intergenic |
GGTGATTCAACAACTCTTGT+TGG | 0.404893 | 5_2:-7940793 | None:intergenic |
ATCTTAGCGCTGTTGTTAAG+AGG | 0.408823 | 5_2:+7940737 | Msa0754380:CDS |
CTTCTAAACCTCCAAACAAC+TGG | 0.411904 | 5_2:-7942408 | None:intergenic |
GCAATAGTCCCATAAACAAT+AGG | 0.416181 | 5_2:-7940327 | None:intergenic |
AGAAAAGCCTCAGAAGGTTC+AGG | 0.431687 | 5_2:-7941093 | None:intergenic |
ACTAGCGGCCGCTCGCCAAC+AGG | 0.433354 | 5_2:+7941389 | Msa0754380:CDS |
GATTGTGATCAAGAGGGTTA+AGG | 0.439714 | 5_2:+7940287 | Msa0754380:intron |
TGGCTTGAATTTACCAAGCC+CGG | 0.441883 | 5_2:+7941164 | Msa0754380:CDS |
CCACATTCAGATATCTCAAA+AGG | 0.442736 | 5_2:-7940817 | None:intergenic |
AATATATCCAAAACAATCTA+CGG | 0.450829 | 5_2:-7942369 | None:intergenic |
AAAAGGAATGTACCCGGGCT+TGG | 0.452777 | 5_2:-7941177 | None:intergenic |
ACGTTTGAGATTGAGACATT+TGG | 0.453924 | 5_2:-7940077 | None:intergenic |
TTGTAAGATTCAATGACAAC+AGG | 0.457288 | 5_2:-7941057 | None:intergenic |
CACATTCAGATATCTCAAAA+GGG | 0.460624 | 5_2:-7940816 | None:intergenic |
GTGGCTCAGTGGATGATCTT+TGG | 0.461147 | 5_2:-7941328 | None:intergenic |
CTTGTTGGGTTGTTGAAACT+AGG | 0.464463 | 5_2:-7940778 | None:intergenic |
TTCAAGCCATCCGGAAGCTT+AGG | 0.466794 | 5_2:-7941150 | None:intergenic |
TGTAGAAGCCAGTTGTTTGG+AGG | 0.475320 | 5_2:+7942400 | Msa0754380:three_prime_UTR |
TTGTATCCTGAAGATGAATC+TGG | 0.476586 | 5_2:+7941015 | Msa0754380:CDS |
TTGAGATATCTGAATGTGGT+TGG | 0.489346 | 5_2:+7940821 | Msa0754380:CDS |
ATATATCCAAAACAATCTAC+GGG | 0.499169 | 5_2:-7942368 | None:intergenic |
GAGATATCTGAATGTGGTTG+GGG | 0.508033 | 5_2:+7940823 | Msa0754380:CDS |
TCATCTTGCTGTCTCTTGAG+TGG | 0.510191 | 5_2:-7940102 | None:intergenic |
TTTCCCTTTAGGGTCAAACT+TGG | 0.511163 | 5_2:+7942300 | Msa0754380:three_prime_UTR |
GAGAAATGAAGAAGAAATTG+GGG | 0.514160 | 5_2:-7940044 | None:intergenic |
AGACAATTAACTTTGTTGGA+AGG | 0.518481 | 5_2:+7942202 | Msa0754380:CDS |
CTTGGTAAATTCAAGCCATC+CGG | 0.524197 | 5_2:-7941159 | None:intergenic |
AAGATCATCCACTGAGCCAC+TGG | 0.526941 | 5_2:+7941331 | Msa0754380:CDS |
AGCTTAGGAACAACAACAGC+AGG | 0.539488 | 5_2:-7941135 | None:intergenic |
TCTTAGCGCTGTTGTTAAGA+GGG | 0.547459 | 5_2:+7940738 | Msa0754380:CDS |
CCTATGAATGACAAGGGGAG+AGG | 0.556014 | 5_2:+7941300 | Msa0754380:CDS |
TGTGCGTGGAGCTTCTAATG+AGG | 0.563078 | 5_2:+7940714 | Msa0754380:CDS |
TTGTCATTCATAGGTTCGAC+CGG | 0.563658 | 5_2:-7941291 | None:intergenic |
GGCTTGAATTTACCAAGCCC+GGG | 0.565243 | 5_2:+7941165 | Msa0754380:CDS |
CATGTACATCCCTAATCAGA+TGG | 0.565284 | 5_2:-7942244 | None:intergenic |
TGGTTCAGATTGTGATCAAG+AGG | 0.565288 | 5_2:+7940280 | Msa0754380:intron |
ACAGGTTTCTTTGTATTCTG+CGG | 0.567258 | 5_2:-7941039 | None:intergenic |
GTTGTTCCTAAGCTTCCGGA+TGG | 0.569025 | 5_2:+7941144 | Msa0754380:CDS |
ACGAGTAGGTTTGATAGCAG+AGG | 0.604802 | 5_2:-7940145 | None:intergenic |
AAATGGACTGTTTATGTGCG+TGG | 0.607530 | 5_2:+7940700 | Msa0754380:CDS |
TTCAGGAACCAGTGGCTCAG+TGG | 0.609060 | 5_2:-7941339 | None:intergenic |
GGTTCAGATTGTGATCAAGA+GGG | 0.613238 | 5_2:+7940281 | Msa0754380:intron |
GCAGAGGAATCATCATCAGT+GGG | 0.613682 | 5_2:-7940129 | None:intergenic |
CTGAGAAGTTCAGGAACCAG+TGG | 0.616400 | 5_2:-7941347 | None:intergenic |
AGCAGAGGAATCATCATCAG+TGG | 0.616651 | 5_2:-7940130 | None:intergenic |
ATGCAGAACCTGTTGGCGAG+CGG | 0.618917 | 5_2:-7941397 | None:intergenic |
CGTGCGAGAAAAGCCTCAGA+AGG | 0.629363 | 5_2:-7941099 | None:intergenic |
GGTCGAACCTATGAATGACA+AGG | 0.642634 | 5_2:+7941293 | Msa0754380:CDS |
GTCGAACCTATGAATGACAA+GGG | 0.645605 | 5_2:+7941294 | Msa0754380:CDS |
ACATTCAGATATCTCAAAAG+GGG | 0.650798 | 5_2:-7940815 | None:intergenic |
GAGGTTTAGAAGAATAGACA+TGG | 0.671266 | 5_2:+7942419 | Msa0754380:three_prime_UTR |
TGTCATTGAATCTTACAATG+AGG | 0.676551 | 5_2:+7941062 | Msa0754380:CDS |
CTGGTTCCTGAACTTCTCAG+AGG | 0.682622 | 5_2:+7941350 | Msa0754380:CDS |
CATTCAGATATCTCAAAAGG+GGG | 0.698972 | 5_2:-7940814 | None:intergenic |
TCGAACCTATGAATGACAAG+GGG | 0.714166 | 5_2:+7941295 | Msa0754380:CDS |
AGACGAGCTCTTAAAACTAG+CGG | 0.761110 | 5_2:+7941374 | Msa0754380:CDS |
TATATCCAAAACAATCTACG+GGG | 0.771191 | 5_2:-7942367 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTATTATTCTTCATTATT+TGG | + | chr5_2:7940235-7940254 | Msa0754380:intron | 10.0% |
!!! | TTTAATAAAGATTGTATTTT+TGG | + | chr5_2:7940260-7940279 | Msa0754380:intron | 10.0% |
!!! | AAATAAATACAATCAATTTT+AGG | + | chr5_2:7941568-7941587 | Msa0754380:intron | 10.0% |
!!! | AATAAATACAATCAATTTTA+GGG | + | chr5_2:7941569-7941588 | Msa0754380:intron | 10.0% |
!!! | ATATCTTAATAGATATTTTT+TGG | + | chr5_2:7942273-7942292 | Msa0754380:three_prime_UTR | 10.0% |
!! | AGTATTATTGGAAATTTAAT+TGG | + | chr5_2:7940569-7940588 | Msa0754380:intron | 15.0% |
!! | GTATTATTGGAAATTTAATT+GGG | + | chr5_2:7940570-7940589 | Msa0754380:intron | 15.0% |
!!! | CATATAATAATGTTACTTTA+AGG | - | chr5_2:7941525-7941544 | None:intergenic | 15.0% |
!!! | TTATGCCAAAATATTTTATA+TGG | + | chr5_2:7942454-7942473 | Msa0754380:three_prime_UTR | 15.0% |
!!! | TATCACCATATAAAATATTT+TGG | - | chr5_2:7942462-7942481 | None:intergenic | 15.0% |
!! | AAAAAGTGAAAACAGAATTA+GGG | - | chr5_2:7940217-7940236 | None:intergenic | 20.0% |
!! | AAAAAAGTGAAAACAGAATT+AGG | - | chr5_2:7940218-7940237 | None:intergenic | 20.0% |
!!! | TTTTTATTTTCTCAGTGTTT+TGG | + | chr5_2:7940388-7940407 | Msa0754380:intron | 20.0% |
!! | TTTAATCATTTGATGTTACT+AGG | + | chr5_2:7940665-7940684 | Msa0754380:intron | 20.0% |
!!! | ATAAAGAAAAGCTTTTGAAA+GGG | - | chr5_2:7941245-7941264 | None:intergenic | 20.0% |
!!! | TATAAAGAAAAGCTTTTGAA+AGG | - | chr5_2:7941246-7941265 | None:intergenic | 20.0% |
!!! | TATGCATTTTCTATTTGAAT+AGG | + | chr5_2:7941432-7941451 | Msa0754380:intron | 20.0% |
!! | AACATTATTATATGCAGTTA+TGG | + | chr5_2:7941531-7941550 | Msa0754380:intron | 20.0% |
!! | ACATTATTATATGCAGTTAT+GGG | + | chr5_2:7941532-7941551 | Msa0754380:intron | 20.0% |
!! | ACAAATACAAAAAGCAAAAA+AGG | - | chr5_2:7941850-7941869 | None:intergenic | 20.0% |
!! | AAAAACAAACTAATCCATTA+AGG | - | chr5_2:7941921-7941940 | None:intergenic | 20.0% |
!! | TGCAAAACAAATAAAACATT+CGG | - | chr5_2:7941948-7941967 | None:intergenic | 20.0% |
!!! | TCTTAATAGATATTTTTTGG+AGG | + | chr5_2:7942276-7942295 | Msa0754380:three_prime_UTR | 20.0% |
!! | AATATATCCAAAACAATCTA+CGG | - | chr5_2:7942372-7942391 | None:intergenic | 20.0% |
!!! | TTTGTTTTTTGATTCCTTAG+TGG | - | chr5_2:7939944-7939963 | None:intergenic | 25.0% |
! | TGAGAAATGAAGAAGAAATT+GGG | - | chr5_2:7940048-7940067 | None:intergenic | 25.0% |
! | TTGAGAAATGAAGAAGAAAT+TGG | - | chr5_2:7940049-7940068 | None:intergenic | 25.0% |
! | ATTTGTGTTCCTATTGTTTA+TGG | + | chr5_2:7940318-7940337 | Msa0754380:CDS | 25.0% |
! | TTTGTGTTCCTATTGTTTAT+GGG | + | chr5_2:7940319-7940338 | Msa0754380:CDS | 25.0% |
!!! | TGACTTTTGTTTGTTTTCAT+AGG | + | chr5_2:7940977-7940996 | Msa0754380:intron | 25.0% |
! | ACAATCGAAAAATCACTAAA+AGG | - | chr5_2:7941197-7941216 | None:intergenic | 25.0% |
!!! | TAAAGAAAAGCTTTTGAAAG+GGG | - | chr5_2:7941244-7941263 | None:intergenic | 25.0% |
! | CATTATTATATGCAGTTATG+GGG | + | chr5_2:7941533-7941552 | Msa0754380:intron | 25.0% |
! | ATCTTGATTAATTGCACATT+AGG | - | chr5_2:7941716-7941735 | None:intergenic | 25.0% |
!!! | ATGTTTTATTTGTTTTGCAC+TGG | + | chr5_2:7941949-7941968 | Msa0754380:intron | 25.0% |
!!! | ATGTTTTATTTGTTTTGCAC+TGG | + | chr5_2:7941949-7941968 | Msa0754380:intron | 25.0% |
! | ATATATCCAAAACAATCTAC+GGG | - | chr5_2:7942371-7942390 | None:intergenic | 25.0% |
AAGAAGAAATTGGGGATTTA+GGG | - | chr5_2:7940039-7940058 | None:intergenic | 30.0% | |
GAGAAATGAAGAAGAAATTG+GGG | - | chr5_2:7940047-7940066 | None:intergenic | 30.0% | |
!!! | AATGAAATTTTGAGACGAGT+AGG | - | chr5_2:7940162-7940181 | None:intergenic | 30.0% |
! | TAGGGTTTTTACCTTTTTGT+CGG | - | chr5_2:7940199-7940218 | None:intergenic | 30.0% |
TTTAGATTGAAGACCCAATT+TGG | + | chr5_2:7940420-7940439 | Msa0754380:intron | 30.0% | |
TCTCGATTATGAAAATGTCA+AGG | + | chr5_2:7940537-7940556 | Msa0754380:intron | 30.0% | |
ATTATGAAAATGTCAAGGAC+TGG | + | chr5_2:7940542-7940561 | Msa0754380:intron | 30.0% | |
ACATTCAGATATCTCAAAAG+GGG | - | chr5_2:7940818-7940837 | None:intergenic | 30.0% | |
CACATTCAGATATCTCAAAA+GGG | - | chr5_2:7940819-7940838 | None:intergenic | 30.0% | |
!!! | TTTGTTTTTGACTCGTTACT+TGG | + | chr5_2:7940937-7940956 | Msa0754380:intron | 30.0% |
TTGTAAGATTCAATGACAAC+AGG | - | chr5_2:7941060-7941079 | None:intergenic | 30.0% | |
TGTCATTGAATCTTACAATG+AGG | + | chr5_2:7941062-7941081 | Msa0754380:CDS | 30.0% | |
TTCTTTATAATCCCTTCTGT+TGG | + | chr5_2:7941257-7941276 | Msa0754380:intron | 30.0% | |
TATGACTAGAGAATTGTTAG+CGG | + | chr5_2:7941461-7941480 | Msa0754380:intron | 30.0% | |
! | TATTGGCTAGTGAAACTTAT+TGG | + | chr5_2:7941804-7941823 | Msa0754380:intron | 30.0% |
!!! | TTATTTGTTTTGCACTGGTT+TGG | + | chr5_2:7941954-7941973 | Msa0754380:intron | 30.0% |
!!! | TTATTTGTTTTGCACTGGTT+TGG | + | chr5_2:7941954-7941973 | Msa0754380:intron | 30.0% |
!! | AAAGGAAACAGTTGATTTTG+TGG | - | chr5_2:7942029-7942048 | None:intergenic | 30.0% |
ATGTGGATTTCTCTTAATTG+TGG | + | chr5_2:7942055-7942074 | Msa0754380:intron | 30.0% | |
AGACAATTAACTTTGTTGGA+AGG | + | chr5_2:7942202-7942221 | Msa0754380:CDS | 30.0% | |
TATATCCAAAACAATCTACG+GGG | - | chr5_2:7942370-7942389 | None:intergenic | 30.0% | |
!!! | TAGGGTTTTGGAGAGAAATT+GGG | - | chr5_2:7940014-7940033 | None:intergenic | 35.0% |
!!! | TTAGGGTTTTGGAGAGAAAT+TGG | - | chr5_2:7940015-7940034 | None:intergenic | 35.0% |
! | AATTGGGGATTTAGGGTTTA+GGG | - | chr5_2:7940032-7940051 | None:intergenic | 35.0% |
! | AAATTGGGGATTTAGGGTTT+AGG | - | chr5_2:7940033-7940052 | None:intergenic | 35.0% |
GAAGAAGAAATTGGGGATTT+AGG | - | chr5_2:7940040-7940059 | None:intergenic | 35.0% | |
! | ACGTTTGAGATTGAGACATT+TGG | - | chr5_2:7940080-7940099 | None:intergenic | 35.0% |
GCAATAGTCCCATAAACAAT+AGG | - | chr5_2:7940330-7940349 | None:intergenic | 35.0% | |
! | TGGGACTATTGCATTTTATC+TGG | + | chr5_2:7940338-7940357 | Msa0754380:CDS | 35.0% |
! | GGGACTATTGCATTTTATCT+GGG | + | chr5_2:7940339-7940358 | Msa0754380:CDS | 35.0% |
! | CTATTGCATTTTATCTGGGT+AGG | + | chr5_2:7940343-7940362 | Msa0754380:CDS | 35.0% |
AAATTGCAAGGGACCAAATT+GGG | - | chr5_2:7940436-7940455 | None:intergenic | 35.0% | |
AAAATTGCAAGGGACCAAAT+TGG | - | chr5_2:7940437-7940456 | None:intergenic | 35.0% | |
! | AATTTTCTCGCAGCTCAATT+TGG | + | chr5_2:7940451-7940470 | Msa0754380:intron | 35.0% |
ACATCTGTTATAATGAGCCA+GGG | - | chr5_2:7940508-7940527 | None:intergenic | 35.0% | |
AACATCTGTTATAATGAGCC+AGG | - | chr5_2:7940509-7940528 | None:intergenic | 35.0% | |
!! | AGGACTGGTTTGAGTATTAT+TGG | + | chr5_2:7940557-7940576 | Msa0754380:intron | 35.0% |
AAAATTGTGAGGGACCAAAT+TGG | + | chr5_2:7940600-7940619 | Msa0754380:intron | 35.0% | |
AAATTGTGAGGGACCAAATT+GGG | + | chr5_2:7940601-7940620 | Msa0754380:intron | 35.0% | |
TCAAGAGTAAAGACCCAATT+TGG | - | chr5_2:7940617-7940636 | None:intergenic | 35.0% | |
CTAGGTCTCAATCTCATAAA+TGG | + | chr5_2:7940683-7940702 | Msa0754380:intron | 35.0% | |
GTGATTCAACAACTCTTGTT+GGG | - | chr5_2:7940795-7940814 | None:intergenic | 35.0% | |
CATTCAGATATCTCAAAAGG+GGG | - | chr5_2:7940817-7940836 | None:intergenic | 35.0% | |
CCACATTCAGATATCTCAAA+AGG | - | chr5_2:7940820-7940839 | None:intergenic | 35.0% | |
!!! | CCTTTTGAGATATCTGAATG+TGG | + | chr5_2:7940817-7940836 | Msa0754380:CDS | 35.0% |
TTGAGATATCTGAATGTGGT+TGG | + | chr5_2:7940821-7940840 | Msa0754380:CDS | 35.0% | |
TGAGATATCTGAATGTGGTT+GGG | + | chr5_2:7940822-7940841 | Msa0754380:CDS | 35.0% | |
TTGTATCCTGAAGATGAATC+TGG | + | chr5_2:7941015-7941034 | Msa0754380:CDS | 35.0% | |
ACAGGTTTCTTTGTATTCTG+CGG | - | chr5_2:7941042-7941061 | None:intergenic | 35.0% | |
ATCACTAAAAGGAATGTACC+CGG | - | chr5_2:7941186-7941205 | None:intergenic | 35.0% | |
CAATCAGTATTGTCAATTGC+AGG | - | chr5_2:7941678-7941697 | None:intergenic | 35.0% | |
TGCACATTAGGAATGAATCA+GGG | - | chr5_2:7941704-7941723 | None:intergenic | 35.0% | |
TTGCACATTAGGAATGAATC+AGG | - | chr5_2:7941705-7941724 | None:intergenic | 35.0% | |
!!! | GATGTCGAAGAGTGTTTTAT+TGG | + | chr5_2:7941787-7941806 | Msa0754380:intron | 35.0% |
!!! | CTTCTTGTTTTTAGTGTACG+AGG | + | chr5_2:7941877-7941896 | Msa0754380:intron | 35.0% |
TAAGGTTCACCATCCAATAA+AGG | - | chr5_2:7941903-7941922 | None:intergenic | 35.0% | |
TATTGGATGGTGAACCTTAA+TGG | + | chr5_2:7941904-7941923 | Msa0754380:intron | 35.0% | |
AACTGTGTTTGCAATGTCTT+AGG | + | chr5_2:7942153-7942172 | Msa0754380:intron | 35.0% | |
GCGAAGACAATTAACTTTGT+TGG | + | chr5_2:7942198-7942217 | Msa0754380:CDS | 35.0% | |
TCAAAACAGCCATCTGATTA+GGG | + | chr5_2:7942235-7942254 | Msa0754380:CDS | 35.0% | |
!! | TTTTTGGAGGATTTCCCTTT+AGG | + | chr5_2:7942289-7942308 | Msa0754380:three_prime_UTR | 35.0% |
!! | TTTTGGAGGATTTCCCTTTA+GGG | + | chr5_2:7942290-7942309 | Msa0754380:three_prime_UTR | 35.0% |
GAGGTTTAGAAGAATAGACA+TGG | + | chr5_2:7942419-7942438 | Msa0754380:three_prime_UTR | 35.0% | |
AGAAGAATAGACATGGTTCT+TGG | + | chr5_2:7942426-7942445 | Msa0754380:three_prime_UTR | 35.0% | |
!! | GGATTTAGGGTTTAGGGTTT+TGG | - | chr5_2:7940026-7940045 | None:intergenic | 40.0% |
! | CTTTTTGTCGGAATCTTCAG+AGG | - | chr5_2:7940187-7940206 | None:intergenic | 40.0% |
! | CTCTGAAGATTCCGACAAAA+AGG | + | chr5_2:7940185-7940204 | Msa0754380:CDS | 40.0% |
TGGTTCAGATTGTGATCAAG+AGG | + | chr5_2:7940280-7940299 | Msa0754380:intron | 40.0% | |
GGTTCAGATTGTGATCAAGA+GGG | + | chr5_2:7940281-7940300 | Msa0754380:intron | 40.0% | |
GATTGTGATCAAGAGGGTTA+AGG | + | chr5_2:7940287-7940306 | Msa0754380:intron | 40.0% | |
! | TGCATTTTATCTGGGTAGGA+AGG | + | chr5_2:7940347-7940366 | Msa0754380:CDS | 40.0% |
TCTCCGGCAAAAAATTAGTC+CGG | + | chr5_2:7940474-7940493 | Msa0754380:intron | 40.0% | |
!! | AAATGGACTGTTTATGTGCG+TGG | + | chr5_2:7940700-7940719 | Msa0754380:CDS | 40.0% |
ATCTTAGCGCTGTTGTTAAG+AGG | + | chr5_2:7940737-7940756 | Msa0754380:CDS | 40.0% | |
TCTTAGCGCTGTTGTTAAGA+GGG | + | chr5_2:7940738-7940757 | Msa0754380:CDS | 40.0% | |
! | CTTGTTGGGTTGTTGAAACT+AGG | - | chr5_2:7940781-7940800 | None:intergenic | 40.0% |
GGTGATTCAACAACTCTTGT+TGG | - | chr5_2:7940796-7940815 | None:intergenic | 40.0% | |
GAGATATCTGAATGTGGTTG+GGG | + | chr5_2:7940823-7940842 | Msa0754380:CDS | 40.0% | |
TGATGCCTGTGAAAAACAGT+TGG | + | chr5_2:7940882-7940901 | Msa0754380:CDS | 40.0% | |
!! | CAGATCCAACTGTTTTTCAC+AGG | - | chr5_2:7940890-7940909 | None:intergenic | 40.0% |
ACAGTTGGATCTGTAAGCTT+CGG | + | chr5_2:7940897-7940916 | Msa0754380:intron | 40.0% | |
! | TGTTTTTCCTGAACCTTCTG+AGG | + | chr5_2:7941086-7941105 | Msa0754380:CDS | 40.0% |
! | TGTTGTTGTTCCTAAGCTTC+CGG | + | chr5_2:7941140-7941159 | Msa0754380:CDS | 40.0% |
CTTGGTAAATTCAAGCCATC+CGG | - | chr5_2:7941162-7941181 | None:intergenic | 40.0% | |
TCACTAAAAGGAATGTACCC+GGG | - | chr5_2:7941185-7941204 | None:intergenic | 40.0% | |
TACTGCAGAAACCAACAGAA+GGG | - | chr5_2:7941271-7941290 | None:intergenic | 40.0% | |
TTGTCATTCATAGGTTCGAC+CGG | - | chr5_2:7941294-7941313 | None:intergenic | 40.0% | |
GTCGAACCTATGAATGACAA+GGG | + | chr5_2:7941294-7941313 | Msa0754380:CDS | 40.0% | |
TCGAACCTATGAATGACAAG+GGG | + | chr5_2:7941295-7941314 | Msa0754380:CDS | 40.0% | |
AGACGAGCTCTTAAAACTAG+CGG | + | chr5_2:7941374-7941393 | Msa0754380:CDS | 40.0% | |
GTGCTATAGCATTGTTGCAT+AGG | + | chr5_2:7941622-7941641 | Msa0754380:intron | 40.0% | |
TTAGTGTACGAGGCCTTTAT+TGG | + | chr5_2:7941887-7941906 | Msa0754380:intron | 40.0% | |
AGAAATCCACATGTGCACAA+AGG | - | chr5_2:7942047-7942066 | None:intergenic | 40.0% | |
GTCAAAACAGCCATCTGATT+AGG | + | chr5_2:7942234-7942253 | Msa0754380:CDS | 40.0% | |
CATGTACATCCCTAATCAGA+TGG | - | chr5_2:7942247-7942266 | None:intergenic | 40.0% | |
!! | TTTCCCTTTAGGGTCAAACT+TGG | + | chr5_2:7942300-7942319 | Msa0754380:three_prime_UTR | 40.0% |
CTTCCAAGTTTGACCCTAAA+GGG | - | chr5_2:7942306-7942325 | None:intergenic | 40.0% | |
TCTTCCAAGTTTGACCCTAA+AGG | - | chr5_2:7942307-7942326 | None:intergenic | 40.0% | |
! | ATCTTCCCCGTAGATTGTTT+TGG | + | chr5_2:7942362-7942381 | Msa0754380:three_prime_UTR | 40.0% |
CTTCTAAACCTCCAAACAAC+TGG | - | chr5_2:7942411-7942430 | None:intergenic | 40.0% | |
! | TCATCTTGCTGTCTCTTGAG+TGG | - | chr5_2:7940105-7940124 | None:intergenic | 45.0% |
GCAGAGGAATCATCATCAGT+GGG | - | chr5_2:7940132-7940151 | None:intergenic | 45.0% | |
AGCAGAGGAATCATCATCAG+TGG | - | chr5_2:7940133-7940152 | None:intergenic | 45.0% | |
! | ACGAGTAGGTTTGATAGCAG+AGG | - | chr5_2:7940148-7940167 | None:intergenic | 45.0% |
GAGCTGCGAGAAAATTGCAA+GGG | - | chr5_2:7940447-7940466 | None:intergenic | 45.0% | |
TGAGCTGCGAGAAAATTGCA+AGG | - | chr5_2:7940448-7940467 | None:intergenic | 45.0% | |
CTCCGGCAAAAAATTAGTCC+GGG | + | chr5_2:7940475-7940494 | Msa0754380:intron | 45.0% | |
TCCGGCAAAAAATTAGTCCG+GGG | + | chr5_2:7940476-7940495 | Msa0754380:intron | 45.0% | |
!!! | TCCCCGGACTAATTTTTTGC+CGG | - | chr5_2:7940480-7940499 | None:intergenic | 45.0% |
TGGGTCACGAGAAAATTGTG+AGG | + | chr5_2:7940589-7940608 | Msa0754380:intron | 45.0% | |
GGGTCACGAGAAAATTGTGA+GGG | + | chr5_2:7940590-7940609 | Msa0754380:intron | 45.0% | |
! | GTTTTTCACAGGCATCACTG+TGG | - | chr5_2:7940879-7940898 | None:intergenic | 45.0% |
AGAAAAGCCTCAGAAGGTTC+AGG | - | chr5_2:7941096-7941115 | None:intergenic | 45.0% | |
AGCTTAGGAACAACAACAGC+AGG | - | chr5_2:7941138-7941157 | None:intergenic | 45.0% | |
TGGCTTGAATTTACCAAGCC+CGG | + | chr5_2:7941164-7941183 | Msa0754380:CDS | 45.0% | |
GTACTGCAGAAACCAACAGA+AGG | - | chr5_2:7941272-7941291 | None:intergenic | 45.0% | |
!! | TCTGTTGGTTTCTGCAGTAC+CGG | + | chr5_2:7941272-7941291 | Msa0754380:intron | 45.0% |
GGTCGAACCTATGAATGACA+AGG | + | chr5_2:7941293-7941312 | Msa0754380:CDS | 45.0% | |
ACAAAGCATGCAGAACCTGT+TGG | - | chr5_2:7941407-7941426 | None:intergenic | 45.0% | |
TTGCAGGTCGCAGAAAATAG+TGG | - | chr5_2:7941662-7941681 | None:intergenic | 45.0% | |
TGTACGAGGCCTTTATTGGA+TGG | + | chr5_2:7941891-7941910 | Msa0754380:intron | 45.0% | |
CTGTTTCCTTTGTGCACATG+TGG | + | chr5_2:7942038-7942057 | Msa0754380:intron | 45.0% | |
!!! | TCAGATGGCTGTTTTGACTG+AGG | - | chr5_2:7942232-7942251 | None:intergenic | 45.0% |
CTGTGTAGAAGCCAGTTGTT+TGG | + | chr5_2:7942397-7942416 | Msa0754380:three_prime_UTR | 45.0% | |
TGTAGAAGCCAGTTGTTTGG+AGG | + | chr5_2:7942400-7942419 | Msa0754380:three_prime_UTR | 45.0% | |
TCGCAGCTCAATTTGGTCTC+CGG | + | chr5_2:7940458-7940477 | Msa0754380:intron | 50.0% | |
TGTGCGTGGAGCTTCTAATG+AGG | + | chr5_2:7940714-7940733 | Msa0754380:CDS | 50.0% | |
TGCGGACCAGATTCATCTTC+AGG | - | chr5_2:7941024-7941043 | None:intergenic | 50.0% | |
GTTGTTCCTAAGCTTCCGGA+TGG | + | chr5_2:7941144-7941163 | Msa0754380:CDS | 50.0% | |
TTCAAGCCATCCGGAAGCTT+AGG | - | chr5_2:7941153-7941172 | None:intergenic | 50.0% | |
GGCTTGAATTTACCAAGCCC+GGG | + | chr5_2:7941165-7941184 | Msa0754380:CDS | 50.0% | |
AAAAGGAATGTACCCGGGCT+TGG | - | chr5_2:7941180-7941199 | None:intergenic | 50.0% | |
CCTCTCCCCTTGTCATTCAT+AGG | - | chr5_2:7941303-7941322 | None:intergenic | 50.0% | |
CCTATGAATGACAAGGGGAG+AGG | + | chr5_2:7941300-7941319 | Msa0754380:CDS | 50.0% | |
GTGGCTCAGTGGATGATCTT+TGG | - | chr5_2:7941331-7941350 | None:intergenic | 50.0% | |
AAGATCATCCACTGAGCCAC+TGG | + | chr5_2:7941331-7941350 | Msa0754380:CDS | 50.0% | |
CTGAGAAGTTCAGGAACCAG+TGG | - | chr5_2:7941350-7941369 | None:intergenic | 50.0% | |
CTGGTTCCTGAACTTCTCAG+AGG | + | chr5_2:7941350-7941369 | Msa0754380:CDS | 50.0% | |
CGTGCGAGAAAAGCCTCAGA+AGG | - | chr5_2:7941102-7941121 | None:intergenic | 55.0% | |
TTCAGGAACCAGTGGCTCAG+TGG | - | chr5_2:7941342-7941361 | None:intergenic | 55.0% | |
! | CGTCTGCCTCTGAGAAGTTC+AGG | - | chr5_2:7941359-7941378 | None:intergenic | 55.0% |
ATGCAGAACCTGTTGGCGAG+CGG | - | chr5_2:7941400-7941419 | None:intergenic | 55.0% | |
TTAGTCCGGGGACAAGTCCC+TGG | + | chr5_2:7940488-7940507 | Msa0754380:intron | 60.0% | |
ATGAGCCAGGGACTTGTCCC+CGG | - | chr5_2:7940496-7940515 | None:intergenic | 60.0% | |
ACTAGCGGCCGCTCGCCAAC+AGG | + | chr5_2:7941389-7941408 | Msa0754380:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_2 | gene | 7939932 | 7942542 | 7939932 | ID=Msa0754380;Name=Msa0754380 |
chr5_2 | mRNA | 7939932 | 7942542 | 7939932 | ID=Msa0754380-mRNA-1;Parent=Msa0754380;Name=Msa0754380-mRNA-1;_AED=0.10;_eAED=0.10;_QI=149|1|1|1|1|1|6|287|275 |
chr5_2 | exon | 7939932 | 7940206 | 7939932 | ID=Msa0754380-mRNA-1:exon:3616;Parent=Msa0754380-mRNA-1 |
chr5_2 | exon | 7940288 | 7940376 | 7940288 | ID=Msa0754380-mRNA-1:exon:3617;Parent=Msa0754380-mRNA-1 |
chr5_2 | exon | 7940687 | 7940908 | 7940687 | ID=Msa0754380-mRNA-1:exon:3618;Parent=Msa0754380-mRNA-1 |
chr5_2 | exon | 7940999 | 7941186 | 7940999 | ID=Msa0754380-mRNA-1:exon:3619;Parent=Msa0754380-mRNA-1 |
chr5_2 | exon | 7941289 | 7941410 | 7941289 | ID=Msa0754380-mRNA-1:exon:3620;Parent=Msa0754380-mRNA-1 |
chr5_2 | exon | 7942175 | 7942542 | 7942175 | ID=Msa0754380-mRNA-1:exon:3621;Parent=Msa0754380-mRNA-1 |
chr5_2 | five_prime_UTR | 7939932 | 7940080 | 7939932 | ID=Msa0754380-mRNA-1:five_prime_utr;Parent=Msa0754380-mRNA-1 |
chr5_2 | CDS | 7940081 | 7940206 | 7940081 | ID=Msa0754380-mRNA-1:cds;Parent=Msa0754380-mRNA-1 |
chr5_2 | CDS | 7940288 | 7940376 | 7940288 | ID=Msa0754380-mRNA-1:cds;Parent=Msa0754380-mRNA-1 |
chr5_2 | CDS | 7940687 | 7940908 | 7940687 | ID=Msa0754380-mRNA-1:cds;Parent=Msa0754380-mRNA-1 |
chr5_2 | CDS | 7940999 | 7941186 | 7940999 | ID=Msa0754380-mRNA-1:cds;Parent=Msa0754380-mRNA-1 |
chr5_2 | CDS | 7941289 | 7941410 | 7941289 | ID=Msa0754380-mRNA-1:cds;Parent=Msa0754380-mRNA-1 |
chr5_2 | CDS | 7942175 | 7942255 | 7942175 | ID=Msa0754380-mRNA-1:cds;Parent=Msa0754380-mRNA-1 |
chr5_2 | three_prime_UTR | 7942256 | 7942542 | 7942256 | ID=Msa0754380-mRNA-1:three_prime_utr;Parent=Msa0754380-mRNA-1 |
Gene Sequence |
Protein sequence |