AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0754380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0754380 MtrunA17_Chr5g0405361 95.620 274 12 0 1 274 1 274 0.0 542
Msa0754380 MtrunA17_Chr4g0036171 71.308 237 66 1 36 272 32 266 2.68e-128 365
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0754380 AT5G45600.2 66.667 261 78 2 10 270 9 260 4.72e-129 367
Msa0754380 AT5G45600.1 66.284 261 80 2 10 270 9 261 5.05e-129 367
Msa0754380 AT2G18000.2 63.203 231 83 1 46 274 33 263 2.85e-108 314
Msa0754380 AT2G18000.1 67.879 165 51 1 46 208 33 197 7.70e-83 248

Find 83 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAGAAATTGGGGATTT+AGG 0.119714 5_2:-7940037 None:intergenic
ATTTGTGTTCCTATTGTTTA+TGG 0.155857 5_2:+7940318 Msa0754380:CDS
GGATTTAGGGTTTAGGGTTT+TGG 0.171824 5_2:-7940023 None:intergenic
TTGAGAAATGAAGAAGAAAT+TGG 0.193899 5_2:-7940046 None:intergenic
TATCACCATATAAAATATTT+TGG 0.199066 5_2:-7942459 None:intergenic
AAGAAGAAATTGGGGATTTA+GGG 0.234618 5_2:-7940036 None:intergenic
ATCTTCCCCGTAGATTGTTT+TGG 0.301941 5_2:+7942362 Msa0754380:three_prime_UTR
AAATTGGGGATTTAGGGTTT+AGG 0.308547 5_2:-7940030 None:intergenic
CTAGGTCTCAATCTCATAAA+TGG 0.308690 5_2:+7940683 Msa0754380:intron
CTTCCAAGTTTGACCCTAAA+GGG 0.311001 5_2:-7942303 None:intergenic
TGAGAAATGAAGAAGAAATT+GGG 0.319935 5_2:-7940045 None:intergenic
CTCTGAAGATTCCGACAAAA+AGG 0.323148 5_2:+7940185 Msa0754380:CDS
GTCAAAACAGCCATCTGATT+AGG 0.323162 5_2:+7942234 Msa0754380:CDS
TGCGGACCAGATTCATCTTC+AGG 0.323612 5_2:-7941021 None:intergenic
TTTGTGTTCCTATTGTTTAT+GGG 0.329826 5_2:+7940319 Msa0754380:CDS
AATTGGGGATTTAGGGTTTA+GGG 0.342091 5_2:-7940029 None:intergenic
AGAAGAATAGACATGGTTCT+TGG 0.350504 5_2:+7942426 Msa0754380:three_prime_UTR
GCGAAGACAATTAACTTTGT+TGG 0.360143 5_2:+7942198 Msa0754380:CDS
TGAGATATCTGAATGTGGTT+GGG 0.370519 5_2:+7940822 Msa0754380:CDS
TGTTGTTGTTCCTAAGCTTC+CGG 0.377160 5_2:+7941140 Msa0754380:CDS
CCTCTCCCCTTGTCATTCAT+AGG 0.378226 5_2:-7941300 None:intergenic
GTGATTCAACAACTCTTGTT+GGG 0.380529 5_2:-7940792 None:intergenic
CGTCTGCCTCTGAGAAGTTC+AGG 0.383496 5_2:-7941356 None:intergenic
CTGTGTAGAAGCCAGTTGTT+TGG 0.386903 5_2:+7942397 Msa0754380:three_prime_UTR
TCAAAACAGCCATCTGATTA+GGG 0.394516 5_2:+7942235 Msa0754380:CDS
TCTTCCAAGTTTGACCCTAA+AGG 0.402244 5_2:-7942304 None:intergenic
GGTGATTCAACAACTCTTGT+TGG 0.404893 5_2:-7940793 None:intergenic
ATCTTAGCGCTGTTGTTAAG+AGG 0.408823 5_2:+7940737 Msa0754380:CDS
CTTCTAAACCTCCAAACAAC+TGG 0.411904 5_2:-7942408 None:intergenic
GCAATAGTCCCATAAACAAT+AGG 0.416181 5_2:-7940327 None:intergenic
AGAAAAGCCTCAGAAGGTTC+AGG 0.431687 5_2:-7941093 None:intergenic
ACTAGCGGCCGCTCGCCAAC+AGG 0.433354 5_2:+7941389 Msa0754380:CDS
GATTGTGATCAAGAGGGTTA+AGG 0.439714 5_2:+7940287 Msa0754380:intron
TGGCTTGAATTTACCAAGCC+CGG 0.441883 5_2:+7941164 Msa0754380:CDS
CCACATTCAGATATCTCAAA+AGG 0.442736 5_2:-7940817 None:intergenic
AATATATCCAAAACAATCTA+CGG 0.450829 5_2:-7942369 None:intergenic
AAAAGGAATGTACCCGGGCT+TGG 0.452777 5_2:-7941177 None:intergenic
ACGTTTGAGATTGAGACATT+TGG 0.453924 5_2:-7940077 None:intergenic
TTGTAAGATTCAATGACAAC+AGG 0.457288 5_2:-7941057 None:intergenic
CACATTCAGATATCTCAAAA+GGG 0.460624 5_2:-7940816 None:intergenic
GTGGCTCAGTGGATGATCTT+TGG 0.461147 5_2:-7941328 None:intergenic
CTTGTTGGGTTGTTGAAACT+AGG 0.464463 5_2:-7940778 None:intergenic
TTCAAGCCATCCGGAAGCTT+AGG 0.466794 5_2:-7941150 None:intergenic
TGTAGAAGCCAGTTGTTTGG+AGG 0.475320 5_2:+7942400 Msa0754380:three_prime_UTR
TTGTATCCTGAAGATGAATC+TGG 0.476586 5_2:+7941015 Msa0754380:CDS
TTGAGATATCTGAATGTGGT+TGG 0.489346 5_2:+7940821 Msa0754380:CDS
ATATATCCAAAACAATCTAC+GGG 0.499169 5_2:-7942368 None:intergenic
GAGATATCTGAATGTGGTTG+GGG 0.508033 5_2:+7940823 Msa0754380:CDS
TCATCTTGCTGTCTCTTGAG+TGG 0.510191 5_2:-7940102 None:intergenic
TTTCCCTTTAGGGTCAAACT+TGG 0.511163 5_2:+7942300 Msa0754380:three_prime_UTR
GAGAAATGAAGAAGAAATTG+GGG 0.514160 5_2:-7940044 None:intergenic
AGACAATTAACTTTGTTGGA+AGG 0.518481 5_2:+7942202 Msa0754380:CDS
CTTGGTAAATTCAAGCCATC+CGG 0.524197 5_2:-7941159 None:intergenic
AAGATCATCCACTGAGCCAC+TGG 0.526941 5_2:+7941331 Msa0754380:CDS
AGCTTAGGAACAACAACAGC+AGG 0.539488 5_2:-7941135 None:intergenic
TCTTAGCGCTGTTGTTAAGA+GGG 0.547459 5_2:+7940738 Msa0754380:CDS
CCTATGAATGACAAGGGGAG+AGG 0.556014 5_2:+7941300 Msa0754380:CDS
TGTGCGTGGAGCTTCTAATG+AGG 0.563078 5_2:+7940714 Msa0754380:CDS
TTGTCATTCATAGGTTCGAC+CGG 0.563658 5_2:-7941291 None:intergenic
GGCTTGAATTTACCAAGCCC+GGG 0.565243 5_2:+7941165 Msa0754380:CDS
CATGTACATCCCTAATCAGA+TGG 0.565284 5_2:-7942244 None:intergenic
TGGTTCAGATTGTGATCAAG+AGG 0.565288 5_2:+7940280 Msa0754380:intron
ACAGGTTTCTTTGTATTCTG+CGG 0.567258 5_2:-7941039 None:intergenic
GTTGTTCCTAAGCTTCCGGA+TGG 0.569025 5_2:+7941144 Msa0754380:CDS
ACGAGTAGGTTTGATAGCAG+AGG 0.604802 5_2:-7940145 None:intergenic
AAATGGACTGTTTATGTGCG+TGG 0.607530 5_2:+7940700 Msa0754380:CDS
TTCAGGAACCAGTGGCTCAG+TGG 0.609060 5_2:-7941339 None:intergenic
GGTTCAGATTGTGATCAAGA+GGG 0.613238 5_2:+7940281 Msa0754380:intron
GCAGAGGAATCATCATCAGT+GGG 0.613682 5_2:-7940129 None:intergenic
CTGAGAAGTTCAGGAACCAG+TGG 0.616400 5_2:-7941347 None:intergenic
AGCAGAGGAATCATCATCAG+TGG 0.616651 5_2:-7940130 None:intergenic
ATGCAGAACCTGTTGGCGAG+CGG 0.618917 5_2:-7941397 None:intergenic
CGTGCGAGAAAAGCCTCAGA+AGG 0.629363 5_2:-7941099 None:intergenic
GGTCGAACCTATGAATGACA+AGG 0.642634 5_2:+7941293 Msa0754380:CDS
GTCGAACCTATGAATGACAA+GGG 0.645605 5_2:+7941294 Msa0754380:CDS
ACATTCAGATATCTCAAAAG+GGG 0.650798 5_2:-7940815 None:intergenic
GAGGTTTAGAAGAATAGACA+TGG 0.671266 5_2:+7942419 Msa0754380:three_prime_UTR
TGTCATTGAATCTTACAATG+AGG 0.676551 5_2:+7941062 Msa0754380:CDS
CTGGTTCCTGAACTTCTCAG+AGG 0.682622 5_2:+7941350 Msa0754380:CDS
CATTCAGATATCTCAAAAGG+GGG 0.698972 5_2:-7940814 None:intergenic
TCGAACCTATGAATGACAAG+GGG 0.714166 5_2:+7941295 Msa0754380:CDS
AGACGAGCTCTTAAAACTAG+CGG 0.761110 5_2:+7941374 Msa0754380:CDS
TATATCCAAAACAATCTACG+GGG 0.771191 5_2:-7942367 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTCTTCATTATT+TGG + chr5_2:7940235-7940254 Msa0754380:intron 10.0%
!!! TTTAATAAAGATTGTATTTT+TGG + chr5_2:7940260-7940279 Msa0754380:intron 10.0%
!!! AAATAAATACAATCAATTTT+AGG + chr5_2:7941568-7941587 Msa0754380:intron 10.0%
!!! AATAAATACAATCAATTTTA+GGG + chr5_2:7941569-7941588 Msa0754380:intron 10.0%
!!! ATATCTTAATAGATATTTTT+TGG + chr5_2:7942273-7942292 Msa0754380:three_prime_UTR 10.0%
!! AGTATTATTGGAAATTTAAT+TGG + chr5_2:7940569-7940588 Msa0754380:intron 15.0%
!! GTATTATTGGAAATTTAATT+GGG + chr5_2:7940570-7940589 Msa0754380:intron 15.0%
!!! CATATAATAATGTTACTTTA+AGG - chr5_2:7941525-7941544 None:intergenic 15.0%
!!! TTATGCCAAAATATTTTATA+TGG + chr5_2:7942454-7942473 Msa0754380:three_prime_UTR 15.0%
!!! TATCACCATATAAAATATTT+TGG - chr5_2:7942462-7942481 None:intergenic 15.0%
!! AAAAAGTGAAAACAGAATTA+GGG - chr5_2:7940217-7940236 None:intergenic 20.0%
!! AAAAAAGTGAAAACAGAATT+AGG - chr5_2:7940218-7940237 None:intergenic 20.0%
!!! TTTTTATTTTCTCAGTGTTT+TGG + chr5_2:7940388-7940407 Msa0754380:intron 20.0%
!! TTTAATCATTTGATGTTACT+AGG + chr5_2:7940665-7940684 Msa0754380:intron 20.0%
!!! ATAAAGAAAAGCTTTTGAAA+GGG - chr5_2:7941245-7941264 None:intergenic 20.0%
!!! TATAAAGAAAAGCTTTTGAA+AGG - chr5_2:7941246-7941265 None:intergenic 20.0%
!!! TATGCATTTTCTATTTGAAT+AGG + chr5_2:7941432-7941451 Msa0754380:intron 20.0%
!! AACATTATTATATGCAGTTA+TGG + chr5_2:7941531-7941550 Msa0754380:intron 20.0%
!! ACATTATTATATGCAGTTAT+GGG + chr5_2:7941532-7941551 Msa0754380:intron 20.0%
!! ACAAATACAAAAAGCAAAAA+AGG - chr5_2:7941850-7941869 None:intergenic 20.0%
!! AAAAACAAACTAATCCATTA+AGG - chr5_2:7941921-7941940 None:intergenic 20.0%
!! TGCAAAACAAATAAAACATT+CGG - chr5_2:7941948-7941967 None:intergenic 20.0%
!!! TCTTAATAGATATTTTTTGG+AGG + chr5_2:7942276-7942295 Msa0754380:three_prime_UTR 20.0%
!! AATATATCCAAAACAATCTA+CGG - chr5_2:7942372-7942391 None:intergenic 20.0%
!!! TTTGTTTTTTGATTCCTTAG+TGG - chr5_2:7939944-7939963 None:intergenic 25.0%
! TGAGAAATGAAGAAGAAATT+GGG - chr5_2:7940048-7940067 None:intergenic 25.0%
! TTGAGAAATGAAGAAGAAAT+TGG - chr5_2:7940049-7940068 None:intergenic 25.0%
! ATTTGTGTTCCTATTGTTTA+TGG + chr5_2:7940318-7940337 Msa0754380:CDS 25.0%
! TTTGTGTTCCTATTGTTTAT+GGG + chr5_2:7940319-7940338 Msa0754380:CDS 25.0%
!!! TGACTTTTGTTTGTTTTCAT+AGG + chr5_2:7940977-7940996 Msa0754380:intron 25.0%
! ACAATCGAAAAATCACTAAA+AGG - chr5_2:7941197-7941216 None:intergenic 25.0%
!!! TAAAGAAAAGCTTTTGAAAG+GGG - chr5_2:7941244-7941263 None:intergenic 25.0%
! CATTATTATATGCAGTTATG+GGG + chr5_2:7941533-7941552 Msa0754380:intron 25.0%
! ATCTTGATTAATTGCACATT+AGG - chr5_2:7941716-7941735 None:intergenic 25.0%
!!! ATGTTTTATTTGTTTTGCAC+TGG + chr5_2:7941949-7941968 Msa0754380:intron 25.0%
!!! ATGTTTTATTTGTTTTGCAC+TGG + chr5_2:7941949-7941968 Msa0754380:intron 25.0%
! ATATATCCAAAACAATCTAC+GGG - chr5_2:7942371-7942390 None:intergenic 25.0%
AAGAAGAAATTGGGGATTTA+GGG - chr5_2:7940039-7940058 None:intergenic 30.0%
GAGAAATGAAGAAGAAATTG+GGG - chr5_2:7940047-7940066 None:intergenic 30.0%
!!! AATGAAATTTTGAGACGAGT+AGG - chr5_2:7940162-7940181 None:intergenic 30.0%
! TAGGGTTTTTACCTTTTTGT+CGG - chr5_2:7940199-7940218 None:intergenic 30.0%
TTTAGATTGAAGACCCAATT+TGG + chr5_2:7940420-7940439 Msa0754380:intron 30.0%
TCTCGATTATGAAAATGTCA+AGG + chr5_2:7940537-7940556 Msa0754380:intron 30.0%
ATTATGAAAATGTCAAGGAC+TGG + chr5_2:7940542-7940561 Msa0754380:intron 30.0%
ACATTCAGATATCTCAAAAG+GGG - chr5_2:7940818-7940837 None:intergenic 30.0%
CACATTCAGATATCTCAAAA+GGG - chr5_2:7940819-7940838 None:intergenic 30.0%
!!! TTTGTTTTTGACTCGTTACT+TGG + chr5_2:7940937-7940956 Msa0754380:intron 30.0%
TTGTAAGATTCAATGACAAC+AGG - chr5_2:7941060-7941079 None:intergenic 30.0%
TGTCATTGAATCTTACAATG+AGG + chr5_2:7941062-7941081 Msa0754380:CDS 30.0%
TTCTTTATAATCCCTTCTGT+TGG + chr5_2:7941257-7941276 Msa0754380:intron 30.0%
TATGACTAGAGAATTGTTAG+CGG + chr5_2:7941461-7941480 Msa0754380:intron 30.0%
! TATTGGCTAGTGAAACTTAT+TGG + chr5_2:7941804-7941823 Msa0754380:intron 30.0%
!!! TTATTTGTTTTGCACTGGTT+TGG + chr5_2:7941954-7941973 Msa0754380:intron 30.0%
!!! TTATTTGTTTTGCACTGGTT+TGG + chr5_2:7941954-7941973 Msa0754380:intron 30.0%
!! AAAGGAAACAGTTGATTTTG+TGG - chr5_2:7942029-7942048 None:intergenic 30.0%
ATGTGGATTTCTCTTAATTG+TGG + chr5_2:7942055-7942074 Msa0754380:intron 30.0%
AGACAATTAACTTTGTTGGA+AGG + chr5_2:7942202-7942221 Msa0754380:CDS 30.0%
TATATCCAAAACAATCTACG+GGG - chr5_2:7942370-7942389 None:intergenic 30.0%
!!! TAGGGTTTTGGAGAGAAATT+GGG - chr5_2:7940014-7940033 None:intergenic 35.0%
!!! TTAGGGTTTTGGAGAGAAAT+TGG - chr5_2:7940015-7940034 None:intergenic 35.0%
! AATTGGGGATTTAGGGTTTA+GGG - chr5_2:7940032-7940051 None:intergenic 35.0%
! AAATTGGGGATTTAGGGTTT+AGG - chr5_2:7940033-7940052 None:intergenic 35.0%
GAAGAAGAAATTGGGGATTT+AGG - chr5_2:7940040-7940059 None:intergenic 35.0%
! ACGTTTGAGATTGAGACATT+TGG - chr5_2:7940080-7940099 None:intergenic 35.0%
GCAATAGTCCCATAAACAAT+AGG - chr5_2:7940330-7940349 None:intergenic 35.0%
! TGGGACTATTGCATTTTATC+TGG + chr5_2:7940338-7940357 Msa0754380:CDS 35.0%
! GGGACTATTGCATTTTATCT+GGG + chr5_2:7940339-7940358 Msa0754380:CDS 35.0%
! CTATTGCATTTTATCTGGGT+AGG + chr5_2:7940343-7940362 Msa0754380:CDS 35.0%
AAATTGCAAGGGACCAAATT+GGG - chr5_2:7940436-7940455 None:intergenic 35.0%
AAAATTGCAAGGGACCAAAT+TGG - chr5_2:7940437-7940456 None:intergenic 35.0%
! AATTTTCTCGCAGCTCAATT+TGG + chr5_2:7940451-7940470 Msa0754380:intron 35.0%
ACATCTGTTATAATGAGCCA+GGG - chr5_2:7940508-7940527 None:intergenic 35.0%
AACATCTGTTATAATGAGCC+AGG - chr5_2:7940509-7940528 None:intergenic 35.0%
!! AGGACTGGTTTGAGTATTAT+TGG + chr5_2:7940557-7940576 Msa0754380:intron 35.0%
AAAATTGTGAGGGACCAAAT+TGG + chr5_2:7940600-7940619 Msa0754380:intron 35.0%
AAATTGTGAGGGACCAAATT+GGG + chr5_2:7940601-7940620 Msa0754380:intron 35.0%
TCAAGAGTAAAGACCCAATT+TGG - chr5_2:7940617-7940636 None:intergenic 35.0%
CTAGGTCTCAATCTCATAAA+TGG + chr5_2:7940683-7940702 Msa0754380:intron 35.0%
GTGATTCAACAACTCTTGTT+GGG - chr5_2:7940795-7940814 None:intergenic 35.0%
CATTCAGATATCTCAAAAGG+GGG - chr5_2:7940817-7940836 None:intergenic 35.0%
CCACATTCAGATATCTCAAA+AGG - chr5_2:7940820-7940839 None:intergenic 35.0%
!!! CCTTTTGAGATATCTGAATG+TGG + chr5_2:7940817-7940836 Msa0754380:CDS 35.0%
TTGAGATATCTGAATGTGGT+TGG + chr5_2:7940821-7940840 Msa0754380:CDS 35.0%
TGAGATATCTGAATGTGGTT+GGG + chr5_2:7940822-7940841 Msa0754380:CDS 35.0%
TTGTATCCTGAAGATGAATC+TGG + chr5_2:7941015-7941034 Msa0754380:CDS 35.0%
ACAGGTTTCTTTGTATTCTG+CGG - chr5_2:7941042-7941061 None:intergenic 35.0%
ATCACTAAAAGGAATGTACC+CGG - chr5_2:7941186-7941205 None:intergenic 35.0%
CAATCAGTATTGTCAATTGC+AGG - chr5_2:7941678-7941697 None:intergenic 35.0%
TGCACATTAGGAATGAATCA+GGG - chr5_2:7941704-7941723 None:intergenic 35.0%
TTGCACATTAGGAATGAATC+AGG - chr5_2:7941705-7941724 None:intergenic 35.0%
!!! GATGTCGAAGAGTGTTTTAT+TGG + chr5_2:7941787-7941806 Msa0754380:intron 35.0%
!!! CTTCTTGTTTTTAGTGTACG+AGG + chr5_2:7941877-7941896 Msa0754380:intron 35.0%
TAAGGTTCACCATCCAATAA+AGG - chr5_2:7941903-7941922 None:intergenic 35.0%
TATTGGATGGTGAACCTTAA+TGG + chr5_2:7941904-7941923 Msa0754380:intron 35.0%
AACTGTGTTTGCAATGTCTT+AGG + chr5_2:7942153-7942172 Msa0754380:intron 35.0%
GCGAAGACAATTAACTTTGT+TGG + chr5_2:7942198-7942217 Msa0754380:CDS 35.0%
TCAAAACAGCCATCTGATTA+GGG + chr5_2:7942235-7942254 Msa0754380:CDS 35.0%
!! TTTTTGGAGGATTTCCCTTT+AGG + chr5_2:7942289-7942308 Msa0754380:three_prime_UTR 35.0%
!! TTTTGGAGGATTTCCCTTTA+GGG + chr5_2:7942290-7942309 Msa0754380:three_prime_UTR 35.0%
GAGGTTTAGAAGAATAGACA+TGG + chr5_2:7942419-7942438 Msa0754380:three_prime_UTR 35.0%
AGAAGAATAGACATGGTTCT+TGG + chr5_2:7942426-7942445 Msa0754380:three_prime_UTR 35.0%
!! GGATTTAGGGTTTAGGGTTT+TGG - chr5_2:7940026-7940045 None:intergenic 40.0%
! CTTTTTGTCGGAATCTTCAG+AGG - chr5_2:7940187-7940206 None:intergenic 40.0%
! CTCTGAAGATTCCGACAAAA+AGG + chr5_2:7940185-7940204 Msa0754380:CDS 40.0%
TGGTTCAGATTGTGATCAAG+AGG + chr5_2:7940280-7940299 Msa0754380:intron 40.0%
GGTTCAGATTGTGATCAAGA+GGG + chr5_2:7940281-7940300 Msa0754380:intron 40.0%
GATTGTGATCAAGAGGGTTA+AGG + chr5_2:7940287-7940306 Msa0754380:intron 40.0%
! TGCATTTTATCTGGGTAGGA+AGG + chr5_2:7940347-7940366 Msa0754380:CDS 40.0%
TCTCCGGCAAAAAATTAGTC+CGG + chr5_2:7940474-7940493 Msa0754380:intron 40.0%
!! AAATGGACTGTTTATGTGCG+TGG + chr5_2:7940700-7940719 Msa0754380:CDS 40.0%
ATCTTAGCGCTGTTGTTAAG+AGG + chr5_2:7940737-7940756 Msa0754380:CDS 40.0%
TCTTAGCGCTGTTGTTAAGA+GGG + chr5_2:7940738-7940757 Msa0754380:CDS 40.0%
! CTTGTTGGGTTGTTGAAACT+AGG - chr5_2:7940781-7940800 None:intergenic 40.0%
GGTGATTCAACAACTCTTGT+TGG - chr5_2:7940796-7940815 None:intergenic 40.0%
GAGATATCTGAATGTGGTTG+GGG + chr5_2:7940823-7940842 Msa0754380:CDS 40.0%
TGATGCCTGTGAAAAACAGT+TGG + chr5_2:7940882-7940901 Msa0754380:CDS 40.0%
!! CAGATCCAACTGTTTTTCAC+AGG - chr5_2:7940890-7940909 None:intergenic 40.0%
ACAGTTGGATCTGTAAGCTT+CGG + chr5_2:7940897-7940916 Msa0754380:intron 40.0%
! TGTTTTTCCTGAACCTTCTG+AGG + chr5_2:7941086-7941105 Msa0754380:CDS 40.0%
! TGTTGTTGTTCCTAAGCTTC+CGG + chr5_2:7941140-7941159 Msa0754380:CDS 40.0%
CTTGGTAAATTCAAGCCATC+CGG - chr5_2:7941162-7941181 None:intergenic 40.0%
TCACTAAAAGGAATGTACCC+GGG - chr5_2:7941185-7941204 None:intergenic 40.0%
TACTGCAGAAACCAACAGAA+GGG - chr5_2:7941271-7941290 None:intergenic 40.0%
TTGTCATTCATAGGTTCGAC+CGG - chr5_2:7941294-7941313 None:intergenic 40.0%
GTCGAACCTATGAATGACAA+GGG + chr5_2:7941294-7941313 Msa0754380:CDS 40.0%
TCGAACCTATGAATGACAAG+GGG + chr5_2:7941295-7941314 Msa0754380:CDS 40.0%
AGACGAGCTCTTAAAACTAG+CGG + chr5_2:7941374-7941393 Msa0754380:CDS 40.0%
GTGCTATAGCATTGTTGCAT+AGG + chr5_2:7941622-7941641 Msa0754380:intron 40.0%
TTAGTGTACGAGGCCTTTAT+TGG + chr5_2:7941887-7941906 Msa0754380:intron 40.0%
AGAAATCCACATGTGCACAA+AGG - chr5_2:7942047-7942066 None:intergenic 40.0%
GTCAAAACAGCCATCTGATT+AGG + chr5_2:7942234-7942253 Msa0754380:CDS 40.0%
CATGTACATCCCTAATCAGA+TGG - chr5_2:7942247-7942266 None:intergenic 40.0%
!! TTTCCCTTTAGGGTCAAACT+TGG + chr5_2:7942300-7942319 Msa0754380:three_prime_UTR 40.0%
CTTCCAAGTTTGACCCTAAA+GGG - chr5_2:7942306-7942325 None:intergenic 40.0%
TCTTCCAAGTTTGACCCTAA+AGG - chr5_2:7942307-7942326 None:intergenic 40.0%
! ATCTTCCCCGTAGATTGTTT+TGG + chr5_2:7942362-7942381 Msa0754380:three_prime_UTR 40.0%
CTTCTAAACCTCCAAACAAC+TGG - chr5_2:7942411-7942430 None:intergenic 40.0%
! TCATCTTGCTGTCTCTTGAG+TGG - chr5_2:7940105-7940124 None:intergenic 45.0%
GCAGAGGAATCATCATCAGT+GGG - chr5_2:7940132-7940151 None:intergenic 45.0%
AGCAGAGGAATCATCATCAG+TGG - chr5_2:7940133-7940152 None:intergenic 45.0%
! ACGAGTAGGTTTGATAGCAG+AGG - chr5_2:7940148-7940167 None:intergenic 45.0%
GAGCTGCGAGAAAATTGCAA+GGG - chr5_2:7940447-7940466 None:intergenic 45.0%
TGAGCTGCGAGAAAATTGCA+AGG - chr5_2:7940448-7940467 None:intergenic 45.0%
CTCCGGCAAAAAATTAGTCC+GGG + chr5_2:7940475-7940494 Msa0754380:intron 45.0%
TCCGGCAAAAAATTAGTCCG+GGG + chr5_2:7940476-7940495 Msa0754380:intron 45.0%
!!! TCCCCGGACTAATTTTTTGC+CGG - chr5_2:7940480-7940499 None:intergenic 45.0%
TGGGTCACGAGAAAATTGTG+AGG + chr5_2:7940589-7940608 Msa0754380:intron 45.0%
GGGTCACGAGAAAATTGTGA+GGG + chr5_2:7940590-7940609 Msa0754380:intron 45.0%
! GTTTTTCACAGGCATCACTG+TGG - chr5_2:7940879-7940898 None:intergenic 45.0%
AGAAAAGCCTCAGAAGGTTC+AGG - chr5_2:7941096-7941115 None:intergenic 45.0%
AGCTTAGGAACAACAACAGC+AGG - chr5_2:7941138-7941157 None:intergenic 45.0%
TGGCTTGAATTTACCAAGCC+CGG + chr5_2:7941164-7941183 Msa0754380:CDS 45.0%
GTACTGCAGAAACCAACAGA+AGG - chr5_2:7941272-7941291 None:intergenic 45.0%
!! TCTGTTGGTTTCTGCAGTAC+CGG + chr5_2:7941272-7941291 Msa0754380:intron 45.0%
GGTCGAACCTATGAATGACA+AGG + chr5_2:7941293-7941312 Msa0754380:CDS 45.0%
ACAAAGCATGCAGAACCTGT+TGG - chr5_2:7941407-7941426 None:intergenic 45.0%
TTGCAGGTCGCAGAAAATAG+TGG - chr5_2:7941662-7941681 None:intergenic 45.0%
TGTACGAGGCCTTTATTGGA+TGG + chr5_2:7941891-7941910 Msa0754380:intron 45.0%
CTGTTTCCTTTGTGCACATG+TGG + chr5_2:7942038-7942057 Msa0754380:intron 45.0%
!!! TCAGATGGCTGTTTTGACTG+AGG - chr5_2:7942232-7942251 None:intergenic 45.0%
CTGTGTAGAAGCCAGTTGTT+TGG + chr5_2:7942397-7942416 Msa0754380:three_prime_UTR 45.0%
TGTAGAAGCCAGTTGTTTGG+AGG + chr5_2:7942400-7942419 Msa0754380:three_prime_UTR 45.0%
TCGCAGCTCAATTTGGTCTC+CGG + chr5_2:7940458-7940477 Msa0754380:intron 50.0%
TGTGCGTGGAGCTTCTAATG+AGG + chr5_2:7940714-7940733 Msa0754380:CDS 50.0%
TGCGGACCAGATTCATCTTC+AGG - chr5_2:7941024-7941043 None:intergenic 50.0%
GTTGTTCCTAAGCTTCCGGA+TGG + chr5_2:7941144-7941163 Msa0754380:CDS 50.0%
TTCAAGCCATCCGGAAGCTT+AGG - chr5_2:7941153-7941172 None:intergenic 50.0%
GGCTTGAATTTACCAAGCCC+GGG + chr5_2:7941165-7941184 Msa0754380:CDS 50.0%
AAAAGGAATGTACCCGGGCT+TGG - chr5_2:7941180-7941199 None:intergenic 50.0%
CCTCTCCCCTTGTCATTCAT+AGG - chr5_2:7941303-7941322 None:intergenic 50.0%
CCTATGAATGACAAGGGGAG+AGG + chr5_2:7941300-7941319 Msa0754380:CDS 50.0%
GTGGCTCAGTGGATGATCTT+TGG - chr5_2:7941331-7941350 None:intergenic 50.0%
AAGATCATCCACTGAGCCAC+TGG + chr5_2:7941331-7941350 Msa0754380:CDS 50.0%
CTGAGAAGTTCAGGAACCAG+TGG - chr5_2:7941350-7941369 None:intergenic 50.0%
CTGGTTCCTGAACTTCTCAG+AGG + chr5_2:7941350-7941369 Msa0754380:CDS 50.0%
CGTGCGAGAAAAGCCTCAGA+AGG - chr5_2:7941102-7941121 None:intergenic 55.0%
TTCAGGAACCAGTGGCTCAG+TGG - chr5_2:7941342-7941361 None:intergenic 55.0%
! CGTCTGCCTCTGAGAAGTTC+AGG - chr5_2:7941359-7941378 None:intergenic 55.0%
ATGCAGAACCTGTTGGCGAG+CGG - chr5_2:7941400-7941419 None:intergenic 55.0%
TTAGTCCGGGGACAAGTCCC+TGG + chr5_2:7940488-7940507 Msa0754380:intron 60.0%
ATGAGCCAGGGACTTGTCCC+CGG - chr5_2:7940496-7940515 None:intergenic 60.0%
ACTAGCGGCCGCTCGCCAAC+AGG + chr5_2:7941389-7941408 Msa0754380:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 7939932 7942542 7939932 ID=Msa0754380;Name=Msa0754380
chr5_2 mRNA 7939932 7942542 7939932 ID=Msa0754380-mRNA-1;Parent=Msa0754380;Name=Msa0754380-mRNA-1;_AED=0.10;_eAED=0.10;_QI=149|1|1|1|1|1|6|287|275
chr5_2 exon 7939932 7940206 7939932 ID=Msa0754380-mRNA-1:exon:3616;Parent=Msa0754380-mRNA-1
chr5_2 exon 7940288 7940376 7940288 ID=Msa0754380-mRNA-1:exon:3617;Parent=Msa0754380-mRNA-1
chr5_2 exon 7940687 7940908 7940687 ID=Msa0754380-mRNA-1:exon:3618;Parent=Msa0754380-mRNA-1
chr5_2 exon 7940999 7941186 7940999 ID=Msa0754380-mRNA-1:exon:3619;Parent=Msa0754380-mRNA-1
chr5_2 exon 7941289 7941410 7941289 ID=Msa0754380-mRNA-1:exon:3620;Parent=Msa0754380-mRNA-1
chr5_2 exon 7942175 7942542 7942175 ID=Msa0754380-mRNA-1:exon:3621;Parent=Msa0754380-mRNA-1
chr5_2 five_prime_UTR 7939932 7940080 7939932 ID=Msa0754380-mRNA-1:five_prime_utr;Parent=Msa0754380-mRNA-1
chr5_2 CDS 7940081 7940206 7940081 ID=Msa0754380-mRNA-1:cds;Parent=Msa0754380-mRNA-1
chr5_2 CDS 7940288 7940376 7940288 ID=Msa0754380-mRNA-1:cds;Parent=Msa0754380-mRNA-1
chr5_2 CDS 7940687 7940908 7940687 ID=Msa0754380-mRNA-1:cds;Parent=Msa0754380-mRNA-1
chr5_2 CDS 7940999 7941186 7940999 ID=Msa0754380-mRNA-1:cds;Parent=Msa0754380-mRNA-1
chr5_2 CDS 7941289 7941410 7941289 ID=Msa0754380-mRNA-1:cds;Parent=Msa0754380-mRNA-1
chr5_2 CDS 7942175 7942255 7942175 ID=Msa0754380-mRNA-1:cds;Parent=Msa0754380-mRNA-1
chr5_2 three_prime_UTR 7942256 7942542 7942256 ID=Msa0754380-mRNA-1:three_prime_utr;Parent=Msa0754380-mRNA-1
Gene Sequence

>Msa0754380

ATGTCTCAATCTCAAACGTTACCACTCAAGAGACAGCAAGATGAAAATCCCACTGATGATGATTCCTCTGCTATCAAACCTACTCGTCTCAAAATTTCATTATCCTCTGAAGATTCCGACAAAAAGATTGTGATCAAGAGGGTTAAGGATGTTGAAATTTGTGTTCCTATTGTTTATGGGACTATTGCATTTTATCTGGGTAGGAAGGCTAGTGAGTCTCAATCTCATAAATGGACTGTTTATGTGCGTGGAGCTTCTAATGAGGATCTTAGCGCTGTTGTTAAGAGGGTTGTGTTTCAGTTGCATCCTAGTTTCAACAACCCAACAAGAGTTGTTGAATCACCCCCTTTTGAGATATCTGAATGTGGTTGGGGTGAATTTGAGATAGCTATCACTCTCTTTTTCCACAGTGATGCCTGTGAAAAACAGTTGGATCTGTATCATCATTTGAAGTTGTATCCTGAAGATGAATCTGGTCCGCAGAATACAAAGAAACCTGTTGTCATTGAATCTTACAATGAGGTTGTTTTTCCTGAACCTTCTGAGGCTTTTCTCGCACGCGTGCAGAATCATCCTGCTGTTGTTGTTCCTAAGCTTCCGGATGGCTTGAATTTACCAAGCCCGGTACCGGTCGAACCTATGAATGACAAGGGGAGAGGTGACACCAAAGATCATCCACTGAGCCACTGGTTCCTGAACTTCTCAGAGGCAGACGAGCTCTTAAAACTAGCGGCCGCTCGCCAACAGGTGCAAGCTCACATTGTTAAGCTGCGAAGACAATTAACTTTGTTGGAAGGATTGCCTCAGTCAAAACAGCCATCTGATTAG

Protein sequence

>Msa0754380

MSQSQTLPLKRQQDENPTDDDSSAIKPTRLKISLSSEDSDKKIVIKRVKDVEICVPIVYGTIAFYLGRKASESQSHKWTVYVRGASNEDLSAVVKRVVFQLHPSFNNPTRVVESPPFEISECGWGEFEIAITLFFHSDACEKQLDLYHHLKLYPEDESGPQNTKKPVVIESYNEVVFPEPSEAFLARVQNHPAVVVPKLPDGLNLPSPVPVEPMNDKGRGDTKDHPLSHWFLNFSEADELLKLAAARQQVQAHIVKLRRQLTLLEGLPQSKQPSD*