Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128050 | sp|Q9FZ24|PPR4_ARATH | 43.160 | 519 | 245 | 6 | 1 | 469 | 1 | 519 | 2.21e-144 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128050 | A0A396JRT9 | 97.292 | 480 | 13 | 0 | 1 | 480 | 60 | 539 | 0.0 | 972 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011960 | Msa0128050 | 0.811285 | 7.555592e-51 | -8.615850e-47 |
| Msa0021220 | Msa0128050 | 0.818373 | 2.027271e-52 | -8.615850e-47 |
| Msa0033950 | Msa0128050 | 0.927643 | 8.829156e-92 | -8.615850e-47 |
| Msa0034030 | Msa0128050 | 0.936115 | 2.905333e-97 | -8.615850e-47 |
| Msa0043660 | Msa0128050 | 0.840405 | 8.872195e-58 | -8.615850e-47 |
| Msa0048550 | Msa0128050 | 0.828785 | 7.412893e-55 | -8.615850e-47 |
| Msa0054440 | Msa0128050 | 0.807842 | 4.148694e-50 | -8.615850e-47 |
| Msa0075500 | Msa0128050 | 0.816518 | 5.306840e-52 | -8.615850e-47 |
| Msa0091560 | Msa0128050 | 0.803259 | 3.796956e-49 | -8.615850e-47 |
| Msa0105620 | Msa0128050 | 0.816564 | 5.183341e-52 | -8.615850e-47 |
| Msa0115130 | Msa0128050 | 0.815498 | 8.964127e-52 | -8.615850e-47 |
| Msa0118590 | Msa0128050 | 0.804346 | 2.257284e-49 | -8.615850e-47 |
| Msa0127020 | Msa0128050 | 0.815899 | 7.296672e-52 | -8.615850e-47 |
| Msa0128050 | Msa0137550 | 0.837072 | 6.447894e-57 | -8.615850e-47 |
| Msa0128050 | Msa0139350 | 0.805417 | 1.348579e-49 | -8.615850e-47 |
| Msa0128050 | Msa0141660 | 0.808382 | 3.182850e-50 | -8.615850e-47 |
| Msa0128050 | Msa0144370 | 0.812123 | 4.966554e-51 | -8.615850e-47 |
| Msa0128050 | Msa0146770 | 0.803064 | 4.167158e-49 | -8.615850e-47 |
| Msa0128050 | Msa0159170 | 0.826370 | 2.815704e-54 | -8.615850e-47 |
| Msa0128050 | Msa0168230 | 0.821694 | 3.523214e-53 | -8.615850e-47 |
| Msa0128050 | Msa0169280 | 0.814270 | 1.677851e-51 | -8.615850e-47 |
| Msa0128050 | Msa0325590 | 0.818522 | 1.876408e-52 | -8.615850e-47 |
| Msa0128050 | Msa0345390 | 0.817664 | 2.932373e-52 | -8.615850e-47 |
| Msa0128050 | Msa0351990 | 0.803147 | 4.005705e-49 | -8.615850e-47 |
| Msa0128050 | Msa0388700 | 0.831259 | 1.847794e-55 | -8.615850e-47 |
| Msa0128050 | Msa0393940 | 0.832212 | 1.075076e-55 | -8.615850e-47 |
| Msa0128050 | Msa0397540 | 0.802679 | 5.002737e-49 | -8.615850e-47 |
| Msa0128050 | Msa0398810 | 0.804124 | 2.511154e-49 | -8.615850e-47 |
| Msa0128050 | Msa0437360 | 0.869994 | 2.039850e-66 | -8.615850e-47 |
| Msa0128050 | Msa0446050 | 0.803724 | 3.041492e-49 | -8.615850e-47 |
| Msa0128050 | Msa0482130 | 0.849515 | 3.077156e-60 | -8.615850e-47 |
| Msa0128050 | Msa0489410 | 0.808579 | 2.889842e-50 | -8.615850e-47 |
| Msa0128050 | Msa0493410 | 0.806473 | 8.087310e-50 | -8.615850e-47 |
| Msa0128050 | Msa0542090 | 0.848922 | 4.499964e-60 | -8.615850e-47 |
| Msa0128050 | Msa0542130 | 0.850372 | 1.771927e-60 | -8.615850e-47 |
| Msa0128050 | Msa0566100 | 0.838659 | 2.522193e-57 | -8.615850e-47 |
| Msa0128050 | Msa0605000 | 0.845905 | 3.033760e-59 | -8.615850e-47 |
| Msa0128050 | Msa0648780 | 0.818675 | 1.732164e-52 | -8.615850e-47 |
| Msa0128050 | Msa0660850 | 0.803357 | 3.623171e-49 | -8.615850e-47 |
| Msa0128050 | Msa0685140 | 0.847406 | 1.180360e-59 | -8.615850e-47 |
| Msa0128050 | Msa0702370 | 0.808222 | 3.442949e-50 | -8.615850e-47 |
| Msa0128050 | Msa0709040 | 0.813528 | 2.445951e-51 | -8.615850e-47 |
| Msa0128050 | Msa0711780 | 0.817454 | 3.270276e-52 | -8.615850e-47 |
| Msa0128050 | Msa0715650 | 0.824427 | 8.121637e-54 | -8.615850e-47 |
| Msa0128050 | Msa0719420 | 0.804405 | 2.195020e-49 | -8.615850e-47 |
| Msa0128050 | Msa0719610 | 0.823652 | 1.234581e-53 | -8.615850e-47 |
| Msa0128050 | Msa0754380 | 0.820292 | 7.406984e-53 | -8.615850e-47 |
| Msa0128050 | Msa0757940 | 0.801980 | 6.969269e-49 | -8.615850e-47 |
| Msa0128050 | Msa0763330 | 0.852901 | 3.405700e-61 | -8.615850e-47 |
| Msa0128050 | Msa0772480 | 0.832490 | 9.175691e-56 | -8.615850e-47 |
| Msa0128050 | Msa0789680 | 0.808253 | 3.391049e-50 | -8.615850e-47 |
| Msa0128050 | Msa0794670 | 0.801052 | 1.080040e-48 | -8.615850e-47 |
| Msa0128050 | Msa0795820 | 0.814684 | 1.358796e-51 | -8.615850e-47 |
| Msa0128050 | Msa0796210 | 0.809979 | 1.447960e-50 | -8.615850e-47 |
| Msa0128050 | Msa0798440 | 0.823080 | 1.679276e-53 | -8.615850e-47 |
| Msa0128050 | Msa0799260 | 0.818115 | 2.319061e-52 | -8.615850e-47 |
| Msa0128050 | Msa0799310 | 0.812860 | 3.428308e-51 | -8.615850e-47 |
| Msa0128050 | Msa0799940 | 0.821209 | 4.559712e-53 | -8.615850e-47 |
| Msa0128050 | Msa0802410 | 0.815795 | 7.699208e-52 | -8.615850e-47 |
| Msa0128050 | Msa0830540 | 0.843388 | 1.445036e-58 | -8.615850e-47 |
| Msa0128050 | Msa0945440 | 0.843724 | 1.174853e-58 | -8.615850e-47 |
| Msa0128050 | Msa1083560 | 0.812391 | 4.339968e-51 | -8.615850e-47 |
| Msa0128050 | Msa1128570 | 0.825222 | 5.272861e-54 | -8.615850e-47 |
| Msa0128050 | Msa1137700 | 0.805819 | 1.110519e-49 | -8.615850e-47 |
| Msa0128050 | Msa1153060 | 0.811773 | 5.919109e-51 | -8.615850e-47 |
| Msa0128050 | Msa1160590 | 0.834567 | 2.782233e-56 | -8.615850e-47 |
| Msa0128050 | Msa1181250 | 0.806072 | 9.824616e-50 | -8.615850e-47 |
| Msa0128050 | Msa1181330 | 0.807913 | 4.007064e-50 | -8.615850e-47 |
| Msa0128050 | Msa1209260 | 0.846855 | 1.671279e-59 | -8.615850e-47 |
| Msa0128050 | Msa1209760 | 0.830920 | 2.238039e-55 | -8.615850e-47 |
| Msa0128050 | Msa1218500 | 0.800293 | 1.542377e-48 | -8.615850e-47 |
| Msa0128050 | Msa1224810 | 0.813128 | 2.994025e-51 | -8.615850e-47 |
| Msa0128050 | Msa1358250 | 0.801612 | 8.295354e-49 | -8.615850e-47 |
| Msa0128050 | Msa1384190 | 0.828249 | 9.983642e-55 | -8.615850e-47 |
| Msa0128050 | Msa1400220 | 0.935434 | 8.540449e-97 | -8.615850e-47 |
| Msa0128050 | Msa1411750 | 0.815983 | 6.990298e-52 | -8.615850e-47 |
| Msa0128050 | Msa1419870 | 0.837130 | 6.231113e-57 | -8.615850e-47 |
| Msa0128050 | Msa1429120 | 0.807299 | 5.409549e-50 | -8.615850e-47 |
| Msa0128050 | Msa1436520 | 0.802102 | 6.577564e-49 | -8.615850e-47 |
| Msa0128050 | Msa1457920 | 0.810640 | 1.042507e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128050 | MtrunA17_Chr1g0194521 | 97.292 | 480 | 13 | 0 | 1 | 480 | 60 | 539 | 0.0 | 972 |
| Msa0128050 | MtrunA17_Chr8g0368151 | 38.377 | 456 | 265 | 7 | 40 | 480 | 29 | 483 | 1.66e-93 | 292 |
| Msa0128050 | MtrunA17_Chr2g0282091 | 30.176 | 454 | 303 | 8 | 29 | 471 | 26 | 476 | 1.77e-62 | 211 |
| Msa0128050 | MtrunA17_Chr8g0359961 | 28.846 | 416 | 293 | 3 | 30 | 442 | 32 | 447 | 6.17e-61 | 207 |
| Msa0128050 | MtrunA17_Chr1g0185601 | 30.839 | 441 | 289 | 9 | 20 | 450 | 25 | 459 | 2.07e-56 | 195 |
| Msa0128050 | MtrunA17_Chr2g0303221 | 30.189 | 424 | 280 | 8 | 13 | 430 | 19 | 432 | 3.18e-56 | 194 |
| Msa0128050 | MtrunA17_Chr4g0021331 | 30.425 | 424 | 281 | 6 | 14 | 431 | 16 | 431 | 2.40e-55 | 192 |
| Msa0128050 | MtrunA17_Chr3g0132571 | 29.252 | 441 | 295 | 8 | 20 | 450 | 26 | 459 | 7.11e-51 | 180 |
| Msa0128050 | MtrunA17_Chr2g0324251 | 27.381 | 420 | 255 | 9 | 51 | 441 | 52 | 450 | 5.56e-42 | 155 |
| Msa0128050 | MtrunA17_Chr1g0155351 | 30.241 | 291 | 199 | 4 | 46 | 332 | 69 | 359 | 1.62e-41 | 152 |
| Msa0128050 | MtrunA17_Chr8g0335951 | 32.018 | 228 | 153 | 2 | 235 | 460 | 199 | 426 | 3.12e-30 | 122 |
| Msa0128050 | MtrunA17_Chr8g0335951 | 28.082 | 292 | 170 | 8 | 9 | 264 | 46 | 333 | 3.64e-19 | 89.7 |
| Msa0128050 | MtrunA17_Chr8g0349421 | 32.653 | 196 | 131 | 1 | 251 | 445 | 3 | 198 | 1.40e-26 | 107 |
| Msa0128050 | MtrunA17_Chr7g0256181 | 23.810 | 399 | 286 | 12 | 38 | 430 | 163 | 549 | 1.68e-24 | 107 |
| Msa0128050 | MtrunA17_Chr1g0171501 | 22.931 | 423 | 306 | 12 | 29 | 445 | 139 | 547 | 2.39e-22 | 100 |
| Msa0128050 | MtrunA17_Chr2g0328121 | 23.197 | 319 | 241 | 4 | 17 | 333 | 30 | 346 | 6.32e-18 | 86.3 |
| Msa0128050 | MtrunA17_Chr8g0349431 | 40.870 | 115 | 65 | 2 | 45 | 157 | 8 | 121 | 1.43e-16 | 76.3 |
| Msa0128050 | MtrunA17_Chr8g0387281 | 22.884 | 319 | 234 | 7 | 82 | 392 | 334 | 648 | 1.71e-12 | 69.7 |
| Msa0128050 | MtrunA17_Chr7g0220481 | 29.213 | 178 | 122 | 3 | 130 | 304 | 283 | 459 | 1.20e-11 | 67.4 |
| Msa0128050 | MtrunA17_Chr8g0377751 | 22.812 | 320 | 223 | 8 | 53 | 359 | 722 | 1030 | 7.40e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128050 | AT1G02370.1 | 43.160 | 519 | 245 | 6 | 1 | 469 | 1 | 519 | 2.25e-145 | 427 |
| Msa0128050 | AT4G01990.1 | 43.542 | 480 | 249 | 8 | 11 | 469 | 6 | 484 | 2.50e-128 | 382 |
| Msa0128050 | AT1G60770.1 | 37.069 | 464 | 271 | 10 | 33 | 480 | 25 | 483 | 1.13e-89 | 282 |
| Msa0128050 | AT1G02150.1 | 34.259 | 432 | 279 | 4 | 33 | 459 | 69 | 500 | 1.33e-76 | 249 |
| Msa0128050 | AT4G21705.1 | 31.818 | 418 | 281 | 4 | 29 | 442 | 23 | 440 | 1.46e-68 | 227 |
| Msa0128050 | AT2G20710.1 | 29.540 | 413 | 284 | 5 | 32 | 441 | 39 | 447 | 1.15e-57 | 198 |
| Msa0128050 | AT4G02820.1 | 29.895 | 475 | 305 | 9 | 8 | 470 | 41 | 499 | 4.33e-55 | 192 |
| Msa0128050 | AT5G27460.1 | 29.070 | 430 | 290 | 6 | 12 | 431 | 21 | 445 | 5.80e-53 | 186 |
| Msa0128050 | AT5G09450.1 | 31.056 | 322 | 216 | 5 | 25 | 340 | 49 | 370 | 2.66e-48 | 171 |
| Msa0128050 | AT2G20710.2 | 29.942 | 344 | 235 | 4 | 100 | 441 | 13 | 352 | 5.68e-47 | 167 |
| Msa0128050 | AT1G28020.1 | 28.267 | 329 | 231 | 5 | 36 | 359 | 41 | 369 | 3.99e-32 | 129 |
| Msa0128050 | AT1G80270.1 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.30e-24 | 105 |
| Msa0128050 | AT1G80270.3 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.30e-24 | 105 |
| Msa0128050 | AT1G80270.2 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.30e-24 | 105 |
| Msa0128050 | AT1G80270.5 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.30e-24 | 105 |
| Msa0128050 | AT1G80270.4 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.30e-24 | 105 |
| Msa0128050 | AT1G15480.1 | 25.205 | 365 | 261 | 9 | 43 | 402 | 138 | 495 | 3.97e-23 | 103 |
| Msa0128050 | AT3G15590.1 | 29.200 | 250 | 173 | 4 | 46 | 293 | 156 | 403 | 1.31e-22 | 101 |
| Msa0128050 | AT3G15590.2 | 29.200 | 250 | 173 | 4 | 46 | 293 | 156 | 403 | 1.31e-22 | 101 |
| Msa0128050 | AT1G07590.1 | 24.633 | 341 | 251 | 5 | 27 | 365 | 64 | 400 | 2.41e-19 | 91.3 |
| Msa0128050 | AT3G11380.1 | 26.780 | 295 | 180 | 6 | 66 | 355 | 78 | 341 | 8.44e-18 | 86.7 |
| Msa0128050 | AT3G11380.1 | 34.722 | 144 | 90 | 4 | 57 | 196 | 372 | 515 | 4.59e-12 | 68.6 |
| Msa0128050 | AT1G28000.1 | 24.567 | 289 | 210 | 6 | 13 | 293 | 13 | 301 | 1.30e-15 | 79.0 |
| Msa0128050 | AT5G21222.1 | 25.000 | 232 | 148 | 6 | 85 | 294 | 467 | 694 | 2.39e-12 | 70.1 |
| Msa0128050 | AT5G21222.2 | 25.000 | 232 | 148 | 6 | 85 | 294 | 467 | 694 | 2.39e-12 | 70.1 |
| Msa0128050 | AT5G21222.4 | 25.000 | 232 | 148 | 6 | 85 | 294 | 467 | 694 | 2.39e-12 | 70.1 |
| Msa0128050 | AT5G21222.3 | 25.000 | 232 | 148 | 6 | 85 | 294 | 467 | 694 | 2.39e-12 | 70.1 |
| Msa0128050 | AT5G02860.1 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.36e-11 | 65.5 |
| Msa0128050 | AT5G02860.4 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.36e-11 | 65.5 |
| Msa0128050 | AT5G02860.2 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.36e-11 | 65.5 |
| Msa0128050 | AT5G02860.5 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.36e-11 | 65.5 |
| Msa0128050 | AT5G02860.3 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.36e-11 | 65.5 |
Find 138 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAGGTTTGCCTTCTTATT+TGG | 0.179522 | 1_3:+57704658 | None:intergenic |
| GGGCATAATAAAATTGTTTA+AGG | 0.218164 | 1_3:-57702926 | Msa0128050:CDS |
| AATTACGGCCGTTTGATTTC+CGG | 0.228375 | 1_3:-57704733 | Msa0128050:CDS |
| TTTGATAAGATGGATGAATT+AGG | 0.262779 | 1_3:-57703432 | Msa0128050:CDS |
| GTCTACTTGTTGTTTCTTGA+AGG | 0.279974 | 1_3:+57704796 | None:intergenic |
| ATGAGTTAAGCAAGATTCTT+AGG | 0.291614 | 1_3:-57702591 | Msa0128050:CDS |
| GGCATGTTAGTTATGATTCT+AGG | 0.296691 | 1_3:-57702891 | Msa0128050:CDS |
| CCATATCATTAAGCCTTCTA+AGG | 0.308417 | 1_3:+57702950 | None:intergenic |
| TTATGCTTTCTAACCTTAGA+AGG | 0.314226 | 1_3:-57702963 | Msa0128050:CDS |
| CTTTCCCTTCGATTATATAC+TGG | 0.317101 | 1_3:+57704581 | None:intergenic |
| GCTGCAGAGGACCTTTCTTT+AGG | 0.319713 | 1_3:-57702786 | Msa0128050:CDS |
| AGGACCTTTCTTTAGGATTC+GGG | 0.341722 | 1_3:-57702779 | Msa0128050:CDS |
| GAGGACCTTTCTTTAGGATT+CGG | 0.351526 | 1_3:-57702780 | Msa0128050:CDS |
| TAGGATTCGGGAAATGTTCA+TGG | 0.370256 | 1_3:-57702767 | Msa0128050:CDS |
| CCTTAGAAGGCTTAATGATA+TGG | 0.371817 | 1_3:-57702950 | Msa0128050:CDS |
| GGAATGTTCTTGTGGGCTTA+AGG | 0.373813 | 1_3:-57702155 | Msa0128050:three_prime_UTR |
| ACAAGAACATTCCCTCCTAT+TGG | 0.387788 | 1_3:+57702165 | None:intergenic |
| TTCTTGCTGAGCCTTTATGC+TGG | 0.387794 | 1_3:-57703066 | Msa0128050:CDS |
| CATATACATAGACATCAAAT+TGG | 0.389303 | 1_3:+57703386 | None:intergenic |
| TTTATTGGAGAAAGGTCAAT+TGG | 0.391224 | 1_3:-57702740 | Msa0128050:CDS |
| CTAGTGATGATTTGATAATC+AGG | 0.397665 | 1_3:-57702355 | Msa0128050:three_prime_UTR |
| GGAAGCTGTGTCGGTCTTTG+AGG | 0.399258 | 1_3:-57702821 | Msa0128050:CDS |
| GTTGGTTGGTGTTGCAGTGC+AGG | 0.407651 | 1_3:-57702869 | Msa0128050:CDS |
| CTCTATGATCGAACCACAGC+AGG | 0.410581 | 1_3:+57704767 | None:intergenic |
| GTTACAAATTCTCGTGGGCT+TGG | 0.417988 | 1_3:+57702470 | None:intergenic |
| TCTACTTGTTGTTTCTTGAA+GGG | 0.418981 | 1_3:+57704797 | None:intergenic |
| CTGCATGAGCTCAGTCCAAT+AGG | 0.427006 | 1_3:-57702180 | Msa0128050:three_prime_UTR |
| GAAGAAGAAACAGATCTTGA+TGG | 0.427741 | 1_3:-57702619 | Msa0128050:CDS |
| AATAAAATTGTTTAAGGAGT+GGG | 0.433563 | 1_3:-57702920 | Msa0128050:CDS |
| TGTTTAAGGAGTGGGAATCT+AGG | 0.433657 | 1_3:-57702912 | Msa0128050:CDS |
| TTGATTATTTCCTTAAGTAC+TGG | 0.438756 | 1_3:-57702331 | Msa0128050:three_prime_UTR |
| TGGTGCTATGAGCCACTTAG+AGG | 0.441022 | 1_3:-57702716 | Msa0128050:CDS |
| CATTACCAGTCCCAGCATAA+AGG | 0.447077 | 1_3:+57703055 | None:intergenic |
| TCAGTTGGTTAATGTTATGA+AGG | 0.448455 | 1_3:-57703337 | Msa0128050:CDS |
| TCTTGCTGAGCCTTTATGCT+GGG | 0.452519 | 1_3:-57703065 | Msa0128050:CDS |
| AATTTGAAAACCAGTACTTA+AGG | 0.455575 | 1_3:+57702321 | None:intergenic |
| ATGGGTGCGGTGTGTATTCA+TGG | 0.462683 | 1_3:+57702430 | None:intergenic |
| GATAGCTCCGATTGGTCACC+GGG | 0.462784 | 1_3:+57702989 | None:intergenic |
| CATAAAGGCTCAGCAAGAAA+TGG | 0.465952 | 1_3:+57703070 | None:intergenic |
| TTAAAGAGGTTTATAGAGTG+TGG | 0.469721 | 1_3:-57703032 | Msa0128050:CDS |
| ATTTGATGTCTATGTATATG+AGG | 0.470560 | 1_3:-57703383 | Msa0128050:CDS |
| CGTCTGCGACACGGTTCCTC+CGG | 0.470565 | 1_3:+57704609 | None:intergenic |
| TTTCTAGGTCGGCTAGTCTT+CGG | 0.471475 | 1_3:+57704635 | None:intergenic |
| GCACTTACAGCTTGTGGTGA+AGG | 0.473435 | 1_3:+57702658 | None:intergenic |
| TGGTATTCATACAGTATTGA+AGG | 0.474569 | 1_3:-57702509 | Msa0128050:CDS |
| TATGTGTACTTGTTCTTAGC+AGG | 0.476882 | 1_3:+57703513 | None:intergenic |
| GTTTGATTTCCGGCGGAGGA+AGG | 0.482051 | 1_3:-57704723 | Msa0128050:CDS |
| AGAGACTCTGAGATGAATTA+CGG | 0.482119 | 1_3:-57704748 | Msa0128050:exon |
| TAAAGAGGTTTATAGAGTGT+GGG | 0.486756 | 1_3:-57703031 | Msa0128050:CDS |
| CTGAGCCTTTATGCTGGGAC+TGG | 0.488058 | 1_3:-57703060 | Msa0128050:CDS |
| AGTTATGATTCTAGGTTGGT+TGG | 0.491947 | 1_3:-57702883 | Msa0128050:CDS |
| ATAATCGAAGGGAAAGCCTT+AGG | 0.492451 | 1_3:-57704574 | Msa0128050:CDS |
| TTCAACCACTCCTTTCACTT+TGG | 0.493231 | 1_3:+57703566 | None:intergenic |
| TACGATACTTTCGAAGCTCC+TGG | 0.493561 | 1_3:+57704527 | None:intergenic |
| CACCGGGGTGATCTTCTTGA+GGG | 0.494822 | 1_3:+57703005 | None:intergenic |
| TGTTCTTGTGGGCTTAAGGC+AGG | 0.495189 | 1_3:-57702151 | Msa0128050:three_prime_UTR |
| TGTGCTGCTTTGAATGACCT+TGG | 0.495240 | 1_3:-57703264 | Msa0128050:CDS |
| ATGAATACCAGGAGATGATT+CGG | 0.497054 | 1_3:+57702522 | None:intergenic |
| GGCCGTTTGATTTCCGGCGG+AGG | 0.498441 | 1_3:-57704727 | Msa0128050:CDS |
| TCGGAGAAGCCTTCCTCCGC+CGG | 0.500205 | 1_3:+57704714 | None:intergenic |
| AGATCACCCCGGTGACCAAT+CGG | 0.504230 | 1_3:-57702996 | Msa0128050:CDS |
| TGAACTCGAGAGATGCGTCC+AGG | 0.504375 | 1_3:-57704545 | Msa0128050:CDS |
| GCTGCTATCTATATAAAAGC+TGG | 0.505469 | 1_3:-57703165 | Msa0128050:CDS |
| TTCCTCCGCCGGAAATCAAA+CGG | 0.507328 | 1_3:+57704725 | None:intergenic |
| GCCCACGAGAATTTGTAACT+TGG | 0.511061 | 1_3:-57702466 | Msa0128050:exon |
| GGTCGGCTAGTCTTCGGTAA+AGG | 0.515798 | 1_3:+57704641 | None:intergenic |
| TGAGGTTGAACGTGTTTATG+AGG | 0.516026 | 1_3:-57703241 | Msa0128050:CDS |
| TGTTAGTTATGATTCTAGGT+TGG | 0.519722 | 1_3:-57702887 | Msa0128050:CDS |
| ATAGGAGGGAATGTTCTTGT+GGG | 0.520788 | 1_3:-57702162 | Msa0128050:three_prime_UTR |
| ACGACTATGCACGGCTGCGA+CGG | 0.522141 | 1_3:-57704692 | Msa0128050:CDS |
| AAGATGAAGACAAAATTGAC+TGG | 0.525053 | 1_3:-57703206 | Msa0128050:CDS |
| TTGTGGGCTTAAGGCAGGAT+AGG | 0.526744 | 1_3:-57702146 | Msa0128050:three_prime_UTR |
| ACTATGCACGGCTGCGACGG+CGG | 0.530582 | 1_3:-57704689 | Msa0128050:CDS |
| TACTTGTTCTTAGCAGGAGG+AGG | 0.531968 | 1_3:+57703519 | None:intergenic |
| TGGGACTGGTAATGTTAAAG+AGG | 0.532622 | 1_3:-57703046 | Msa0128050:CDS |
| AGATAGCTCCGATTGGTCAC+CGG | 0.533726 | 1_3:+57702988 | None:intergenic |
| CCCACGAGAATTTGTAACTT+GGG | 0.533882 | 1_3:-57702465 | Msa0128050:exon |
| ATTTCCCGAATCCTAAAGAA+AGG | 0.537745 | 1_3:+57702775 | None:intergenic |
| TGCTTTGAATGACCTTGGTG+AGG | 0.538207 | 1_3:-57703259 | Msa0128050:CDS |
| TCACCGGGGTGATCTTCTTG+AGG | 0.539174 | 1_3:+57703004 | None:intergenic |
| TTGGAGAAAGGTCAATTGGA+TGG | 0.539563 | 1_3:-57702736 | Msa0128050:CDS |
| AGAAAAGCACTTACAGCTTG+TGG | 0.542366 | 1_3:+57702652 | None:intergenic |
| GGCTGAGCTTCCAAATAAGA+AGG | 0.546791 | 1_3:-57704668 | Msa0128050:CDS |
| AAAGAGGTTTATAGAGTGTG+GGG | 0.547043 | 1_3:-57703030 | Msa0128050:CDS |
| GAAGCTCTCAAGAGCTGCAG+AGG | 0.547848 | 1_3:-57702799 | Msa0128050:CDS |
| GATCTTGTGTCCAAAGTGAA+AGG | 0.549809 | 1_3:-57703576 | Msa0128050:CDS |
| ACTGCATCCGAATCATCTCC+TGG | 0.552993 | 1_3:-57702529 | Msa0128050:CDS |
| AGAAATGGTAAGTTTCGCGT+TGG | 0.553517 | 1_3:+57703085 | None:intergenic |
| TTACAGCTTGTGGTGAAGGT+TGG | 0.556374 | 1_3:+57702662 | None:intergenic |
| TAATAAAATTGTTTAAGGAG+TGG | 0.559489 | 1_3:-57702921 | Msa0128050:CDS |
| TTCAATACTGTATGAATACC+AGG | 0.559830 | 1_3:+57702511 | None:intergenic |
| TCCCAAGTTACAAATTCTCG+TGG | 0.560694 | 1_3:+57702464 | None:intergenic |
| TTGAACCAGTATATAATCGA+AGG | 0.561352 | 1_3:-57704586 | Msa0128050:CDS |
| ATTGGTTGCAGATAATGGAA+TGG | 0.561950 | 1_3:-57703650 | Msa0128050:intron |
| AATAGGAGGGAATGTTCTTG+TGG | 0.564209 | 1_3:-57702163 | Msa0128050:three_prime_UTR |
| AGCTGAGTTGATGCTTAAGA+AGG | 0.568467 | 1_3:-57703130 | Msa0128050:CDS |
| TGGTAAGTTTCGCGTTGGCG+CGG | 0.569478 | 1_3:+57703090 | None:intergenic |
| CTGAAAGTGCGGCCTCTAAG+TGG | 0.571070 | 1_3:+57702704 | None:intergenic |
| ATGTCTATGTATATGAGGCT+AGG | 0.571867 | 1_3:-57703378 | Msa0128050:CDS |
| TAGATTCCATCATGCATTCG+AGG | 0.573744 | 1_3:-57704506 | Msa0128050:intron |
| TTATCAAATCATCACTAGCT+CGG | 0.573776 | 1_3:+57702360 | None:intergenic |
| CATGGACAAGGAAGCTGTGT+CGG | 0.574022 | 1_3:-57702830 | Msa0128050:CDS |
| CATGAGCTCAGTCCAATAGG+AGG | 0.577937 | 1_3:-57702177 | Msa0128050:three_prime_UTR |
| CTGGTTCAACGTCTGCGACA+CGG | 0.577943 | 1_3:+57704600 | None:intergenic |
| ACCGTCGAAAGTTCCTCAGT+TGG | 0.578763 | 1_3:-57703352 | Msa0128050:CDS |
| TAGAAGGCTTAATGATATGG+AGG | 0.581977 | 1_3:-57702947 | Msa0128050:CDS |
| GAGGCCGCACTTTCAGAAGT+CGG | 0.583270 | 1_3:-57702697 | Msa0128050:CDS |
| ACCAACTGAGGAACTTTCGA+CGG | 0.585028 | 1_3:+57703351 | None:intergenic |
| CATAATAAGATAGCTCCGAT+TGG | 0.585163 | 1_3:+57702981 | None:intergenic |
| GCGATACCTCGAATGCATGA+TGG | 0.585983 | 1_3:+57704500 | None:intergenic |
| GTGTACTTGTTCTTAGCAGG+AGG | 0.589015 | 1_3:+57703516 | None:intergenic |
| TGGTTAATGTTATGAAGGAG+AGG | 0.593769 | 1_3:-57703332 | Msa0128050:CDS |
| ATCACATGTGTATCATATGT+AGG | 0.598621 | 1_3:-57702394 | Msa0128050:three_prime_UTR |
| TTCATAACATTAACCAACTG+AGG | 0.600464 | 1_3:+57703339 | None:intergenic |
| AGAAGGCTTAATGATATGGA+GGG | 0.604451 | 1_3:-57702946 | Msa0128050:CDS |
| GCTAAGAACAAGTACACATA+CGG | 0.606065 | 1_3:-57703510 | Msa0128050:CDS |
| TCTTCTAAACTGTTACTGCA+AGG | 0.614146 | 1_3:-57703484 | Msa0128050:CDS |
| TACGGCCGTTTGATTTCCGG+CGG | 0.616646 | 1_3:-57704730 | Msa0128050:CDS |
| GGCTTACTTGAGTCAAAACA+TGG | 0.616784 | 1_3:-57702848 | Msa0128050:CDS |
| CCCAAGTTACAAATTCTCGT+GGG | 0.622015 | 1_3:+57702465 | None:intergenic |
| CTTGAGTCAAAACATGGACA+AGG | 0.623542 | 1_3:-57702842 | Msa0128050:CDS |
| AAGAGGTTTATAGAGTGTGG+GGG | 0.627275 | 1_3:-57703029 | Msa0128050:CDS |
| TGAACCAGTATATAATCGAA+GGG | 0.630767 | 1_3:-57704585 | Msa0128050:CDS |
| TCGCAGCCGTGCATAGTCGT+CGG | 0.630947 | 1_3:+57704695 | None:intergenic |
| CTAGCCGACCTAGAAAAGAC+CGG | 0.635101 | 1_3:-57704628 | Msa0128050:CDS |
| TGAGTTGATGCTTAAGAAGG+TGG | 0.644162 | 1_3:-57703127 | Msa0128050:CDS |
| ATGAGCTCAGTCCAATAGGA+GGG | 0.651102 | 1_3:-57702176 | Msa0128050:three_prime_UTR |
| TAATGGAATGGATGATGATG+AGG | 0.652324 | 1_3:-57703638 | Msa0128050:CDS |
| CAAGGAACTAATGCTAGACA+AGG | 0.652550 | 1_3:-57703466 | Msa0128050:CDS |
| GACCCTCAAGAAGATCACCC+CGG | 0.654594 | 1_3:-57703007 | Msa0128050:CDS |
| AGTAGACAAAATCCCTGCTG+TGG | 0.658513 | 1_3:-57704780 | Msa0128050:five_prime_UTR |
| ATCGCCGACTTCTGAAAGTG+CGG | 0.674194 | 1_3:+57702693 | None:intergenic |
| TCTATGATCGAACCACAGCA+GGG | 0.676707 | 1_3:+57704768 | None:intergenic |
| GCTTCTCCGACGACTATGCA+CGG | 0.690136 | 1_3:-57704701 | Msa0128050:CDS |
| GCCGACCTAGAAAAGACCGG+AGG | 0.743237 | 1_3:-57704625 | Msa0128050:CDS |
| TGTGTCCAAAGTGAAAGGAG+TGG | 0.764655 | 1_3:-57703571 | Msa0128050:CDS |
| AAACACGTTCAACCTCACCA+AGG | 0.766259 | 1_3:+57703247 | None:intergenic |
| ATAGCTCCGATTGGTCACCG+GGG | 0.806286 | 1_3:+57702990 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAATGATGTTTTGAT+TGG | - | chr1_3:57703285-57703304 | Msa0128050:CDS | 15.0% |
| !! | TCAACATGAATCAAAATTTA+GGG | + | chr1_3:57702501-57702520 | None:intergenic | 20.0% |
| !! | TTGTTAATAAATGAATCAAC+TGG | - | chr1_3:57702752-57702771 | Msa0128050:CDS | 20.0% |
| !! | AGATTTAAAGATTAACAAGT+TGG | - | chr1_3:57703133-57703152 | Msa0128050:CDS | 20.0% |
| !! | TAATAAAATTGTTTAAGGAG+TGG | - | chr1_3:57704032-57704051 | Msa0128050:intron | 20.0% |
| !! | AATAAAATTGTTTAAGGAGT+GGG | - | chr1_3:57704033-57704052 | Msa0128050:intron | 20.0% |
| !! | TTAAAAAAGACATAAACTGT+CGG | - | chr1_3:57704717-57704736 | Msa0128050:CDS | 20.0% |
| !! | AAATTTAGGGTGGAAAAAAT+TGG | + | chr1_3:57702488-57702507 | None:intergenic | 25.0% |
| ! | CTCAACATGAATCAAAATTT+AGG | + | chr1_3:57702502-57702521 | None:intergenic | 25.0% |
| ! | AAAATTAGTTAGAGTCGTTT+AGG | + | chr1_3:57702598-57702617 | None:intergenic | 25.0% |
| ! | ACTAATTATGTTCTGTGTAA+TGG | - | chr1_3:57702716-57702735 | Msa0128050:CDS | 25.0% |
| ! | TTATATAGTAGTCACAAGAT+CGG | - | chr1_3:57702817-57702836 | Msa0128050:CDS | 25.0% |
| !!! | TTTACCATCTTTTTTACGAT+AGG | + | chr1_3:57702975-57702994 | None:intergenic | 25.0% |
| !! | TAAAGATTAACAAGTTGGAT+AGG | - | chr1_3:57703138-57703157 | Msa0128050:CDS | 25.0% |
| !! | AAAGATTAACAAGTTGGATA+GGG | - | chr1_3:57703139-57703158 | Msa0128050:CDS | 25.0% |
| ! | TAGTATATGATAGAACACTA+TGG | - | chr1_3:57703165-57703184 | Msa0128050:CDS | 25.0% |
| !! | TGAGGCAAATTAATTTTTCA+TGG | - | chr1_3:57703333-57703352 | Msa0128050:CDS | 25.0% |
| !! | GAGGCAAATTAATTTTTCAT+GGG | - | chr1_3:57703334-57703353 | Msa0128050:CDS | 25.0% |
| !!! | ATTGTCTCATTTTGATAAGA+TGG | - | chr1_3:57703511-57703530 | Msa0128050:CDS | 25.0% |
| ! | TTTGATAAGATGGATGAATT+AGG | - | chr1_3:57703521-57703540 | Msa0128050:CDS | 25.0% |
| ! | CATATACATAGACATCAAAT+TGG | + | chr1_3:57703570-57703589 | None:intergenic | 25.0% |
| ! | ATTTGATGTCTATGTATATG+AGG | - | chr1_3:57703570-57703589 | Msa0128050:CDS | 25.0% |
| !! | CTGAATTTACATACATTTTG+TGG | - | chr1_3:57703657-57703676 | Msa0128050:intron | 25.0% |
| ! | GGGCATAATAAAATTGTTTA+AGG | - | chr1_3:57704027-57704046 | Msa0128050:intron | 25.0% |
| !!! | AATGTTCATGGTGTTTTTAT+TGG | - | chr1_3:57704198-57704217 | Msa0128050:intron | 25.0% |
| !!! | AGTAATGCAAGTTTTAATAG+AGG | + | chr1_3:57704407-57704426 | None:intergenic | 25.0% |
| !!! | GTGATTGTTTTTTCAATGAT+GGG | + | chr1_3:57704544-57704563 | None:intergenic | 25.0% |
| !!! | TGTGATTGTTTTTTCAATGA+TGG | + | chr1_3:57704545-57704564 | None:intergenic | 25.0% |
| ! | TTGATTATTTCCTTAAGTAC+TGG | - | chr1_3:57704622-57704641 | Msa0128050:CDS | 25.0% |
| ! | AATTTGAAAACCAGTACTTA+AGG | + | chr1_3:57704635-57704654 | None:intergenic | 25.0% |
| !!! | TTTCTTGAAGGGTTTTGTTA+GGG | + | chr1_3:57702148-57702167 | None:intergenic | 30.0% |
| !! | TCTACTTGTTGTTTCTTGAA+GGG | + | chr1_3:57702159-57702178 | None:intergenic | 30.0% |
| TAAAGGTTTGCCTTCTTATT+TGG | + | chr1_3:57702298-57702317 | None:intergenic | 30.0% | |
| TTGAACCAGTATATAATCGA+AGG | - | chr1_3:57702367-57702386 | Msa0128050:three_prime_UTR | 30.0% | |
| TGAACCAGTATATAATCGAA+GGG | - | chr1_3:57702368-57702387 | Msa0128050:three_prime_UTR | 30.0% | |
| ACATGAATCAAAATTTAGGG+TGG | + | chr1_3:57702498-57702517 | None:intergenic | 30.0% | |
| TGATGATAAACTATGAAGCA+TGG | + | chr1_3:57702676-57702695 | None:intergenic | 30.0% | |
| !!! | AATTAGTTTTGCCTTGTCTA+TGG | + | chr1_3:57702703-57702722 | None:intergenic | 30.0% |
| !!! | CGCTTATTTTATTCTCATGT+TGG | + | chr1_3:57702869-57702888 | None:intergenic | 30.0% |
| ATGACAATATTAGAGAGAGT+TGG | - | chr1_3:57702942-57702961 | Msa0128050:CDS | 30.0% | |
| TGACAATATTAGAGAGAGTT+GGG | - | chr1_3:57702943-57702962 | Msa0128050:CDS | 30.0% | |
| ! | AGATGGTAAAAGTTTGACTT+AGG | - | chr1_3:57702985-57703004 | Msa0128050:CDS | 30.0% |
| !! | TTTTGATTGGTTGCAGATAA+TGG | - | chr1_3:57703298-57703317 | Msa0128050:CDS | 30.0% |
| TTCATAACATTAACCAACTG+AGG | + | chr1_3:57703617-57703636 | None:intergenic | 30.0% | |
| TCAGTTGGTTAATGTTATGA+AGG | - | chr1_3:57703616-57703635 | Msa0128050:CDS | 30.0% | |
| ! | ACATACATTTTGTGGATGAA+TGG | - | chr1_3:57703665-57703684 | Msa0128050:intron | 30.0% |
| AAGATGAAGACAAAATTGAC+TGG | - | chr1_3:57703747-57703766 | Msa0128050:intron | 30.0% | |
| ! | CTTTTATATAGATAGCAGCA+AGG | + | chr1_3:57703787-57703806 | None:intergenic | 30.0% |
| TTAAAGAGGTTTATAGAGTG+TGG | - | chr1_3:57703921-57703940 | Msa0128050:intron | 30.0% | |
| TAAAGAGGTTTATAGAGTGT+GGG | - | chr1_3:57703922-57703941 | Msa0128050:intron | 30.0% | |
| TTATGCTTTCTAACCTTAGA+AGG | - | chr1_3:57703990-57704009 | Msa0128050:intron | 30.0% | |
| TGTTAGTTATGATTCTAGGT+TGG | - | chr1_3:57704066-57704085 | Msa0128050:intron | 30.0% | |
| !! | ATGGTGTTTTTATTGGAGAA+AGG | - | chr1_3:57704205-57704224 | Msa0128050:intron | 30.0% |
| TTTATTGGAGAAAGGTCAAT+TGG | - | chr1_3:57704213-57704232 | Msa0128050:intron | 30.0% | |
| ATGAGTTAAGCAAGATTCTT+AGG | - | chr1_3:57704362-57704381 | Msa0128050:intron | 30.0% | |
| TTCAATACTGTATGAATACC+AGG | + | chr1_3:57704445-57704464 | None:intergenic | 30.0% | |
| ! | TGGTATTCATACAGTATTGA+AGG | - | chr1_3:57704444-57704463 | Msa0128050:intron | 30.0% |
| ATCACATGTGTATCATATGT+AGG | - | chr1_3:57704559-57704578 | Msa0128050:CDS | 30.0% | |
| TTATCAAATCATCACTAGCT+CGG | + | chr1_3:57704596-57704615 | None:intergenic | 30.0% | |
| ! | CTAGTGATGATTTGATAATC+AGG | - | chr1_3:57704598-57704617 | Msa0128050:CDS | 30.0% |
| !!! | TCTAGTTGTTTTGTTTGCTA+TGG | - | chr1_3:57704677-57704696 | Msa0128050:CDS | 30.0% |
| !!! | GTTTCTTGAAGGGTTTTGTT+AGG | + | chr1_3:57702149-57702168 | None:intergenic | 35.0% |
| !! | GTCTACTTGTTGTTTCTTGA+AGG | + | chr1_3:57702160-57702179 | None:intergenic | 35.0% |
| !! | AGAGACTCTGAGATGAATTA+CGG | - | chr1_3:57702205-57702224 | Msa0128050:three_prime_UTR | 35.0% |
| CTTTCCCTTCGATTATATAC+TGG | + | chr1_3:57702375-57702394 | None:intergenic | 35.0% | |
| ATCATCACAATCCATAGACA+AGG | - | chr1_3:57702689-57702708 | Msa0128050:CDS | 35.0% | |
| ! | AAATGAATCAACTGGCTTAG+TGG | - | chr1_3:57702760-57702779 | Msa0128050:CDS | 35.0% |
| AGCACCTATCGTAAAAAAGA+TGG | - | chr1_3:57702968-57702987 | Msa0128050:CDS | 35.0% | |
| ! | TGGTAAAAGTTTGACTTAGG+TGG | - | chr1_3:57702988-57703007 | Msa0128050:CDS | 35.0% |
| ! | GACCTGTAGATTTTGTAGTA+CGG | - | chr1_3:57703030-57703049 | Msa0128050:CDS | 35.0% |
| ! | CAAGTCTTATCCCACTAATT+GGG | + | chr1_3:57703215-57703234 | None:intergenic | 35.0% |
| !! | ATTGGTTGCAGATAATGGAA+TGG | - | chr1_3:57703303-57703322 | Msa0128050:CDS | 35.0% |
| ! | TAATGGAATGGATGATGATG+AGG | - | chr1_3:57703315-57703334 | Msa0128050:CDS | 35.0% |
| TATGTGTACTTGTTCTTAGC+AGG | + | chr1_3:57703443-57703462 | None:intergenic | 35.0% | |
| GCTAAGAACAAGTACACATA+CGG | - | chr1_3:57703443-57703462 | Msa0128050:CDS | 35.0% | |
| TCTTCTAAACTGTTACTGCA+AGG | - | chr1_3:57703469-57703488 | Msa0128050:CDS | 35.0% | |
| ATGTCTATGTATATGAGGCT+AGG | - | chr1_3:57703575-57703594 | Msa0128050:CDS | 35.0% | |
| TGGTTAATGTTATGAAGGAG+AGG | - | chr1_3:57703621-57703640 | Msa0128050:CDS | 35.0% | |
| GCTGCTATCTATATAAAAGC+TGG | - | chr1_3:57703788-57703807 | Msa0128050:intron | 35.0% | |
| AAAGAGGTTTATAGAGTGTG+GGG | - | chr1_3:57703923-57703942 | Msa0128050:intron | 35.0% | |
| CATAATAAGATAGCTCCGAT+TGG | + | chr1_3:57703975-57703994 | None:intergenic | 35.0% | |
| CCATATCATTAAGCCTTCTA+AGG | + | chr1_3:57704006-57704025 | None:intergenic | 35.0% | |
| CCTTAGAAGGCTTAATGATA+TGG | - | chr1_3:57704003-57704022 | Msa0128050:intron | 35.0% | |
| TAGAAGGCTTAATGATATGG+AGG | - | chr1_3:57704006-57704025 | Msa0128050:intron | 35.0% | |
| AGAAGGCTTAATGATATGGA+GGG | - | chr1_3:57704007-57704026 | Msa0128050:intron | 35.0% | |
| GGCATGTTAGTTATGATTCT+AGG | - | chr1_3:57704062-57704081 | Msa0128050:intron | 35.0% | |
| !! | AGTTATGATTCTAGGTTGGT+TGG | - | chr1_3:57704070-57704089 | Msa0128050:intron | 35.0% |
| ATTTCCCGAATCCTAAAGAA+AGG | + | chr1_3:57704181-57704200 | None:intergenic | 35.0% | |
| GAAGAAGAAACAGATCTTGA+TGG | - | chr1_3:57704334-57704353 | Msa0128050:intron | 35.0% | |
| ATGAATACCAGGAGATGATT+CGG | + | chr1_3:57704434-57704453 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTCAATGATGGGTG+CGG | + | chr1_3:57704539-57704558 | None:intergenic | 35.0% |
| AAAAAGACATAAACTGTCGG+TGG | - | chr1_3:57704720-57704739 | Msa0128050:CDS | 35.0% | |
| ! | AATTACGGCCGTTTGATTTC+CGG | - | chr1_3:57702220-57702239 | Msa0128050:three_prime_UTR | 40.0% |
| ATAATCGAAGGGAAAGCCTT+AGG | - | chr1_3:57702379-57702398 | Msa0128050:three_prime_UTR | 40.0% | |
| ! | CTCGAGTTCATCTTTTCCTA+AGG | + | chr1_3:57702398-57702417 | None:intergenic | 40.0% |
| TAGATTCCATCATGCATTCG+AGG | - | chr1_3:57702447-57702466 | Msa0128050:three_prime_UTR | 40.0% | |
| !! | GTAACATCGACTCTGATTGA+AGG | - | chr1_3:57702537-57702556 | Msa0128050:CDS | 40.0% |
| AGTTAGAGTCGTTTAGGTGT+CGG | + | chr1_3:57702592-57702611 | None:intergenic | 40.0% | |
| ! | TAAAGTACCACTCAAGCTGA+AGG | - | chr1_3:57702789-57702808 | Msa0128050:CDS | 40.0% |
| ! | AAAGTACCACTCAAGCTGAA+GGG | - | chr1_3:57702790-57702809 | Msa0128050:CDS | 40.0% |
| ACAAGATCGGTGATGTTGTA+TGG | - | chr1_3:57702830-57702849 | Msa0128050:CDS | 40.0% | |
| ! | AAGTTTGACTTAGGTGGTCT+AGG | - | chr1_3:57702994-57703013 | Msa0128050:CDS | 40.0% |
| CTCCGTACTACAAAATCTAC+AGG | + | chr1_3:57703035-57703054 | None:intergenic | 40.0% | |
| TGATTTGACTAACCTCCATC+TGG | + | chr1_3:57703064-57703083 | None:intergenic | 40.0% | |
| ! | GAGGTTAGTCAAATCACTTG+AGG | - | chr1_3:57703068-57703087 | Msa0128050:CDS | 40.0% |
| CTTATCCCACTAATTGGGAT+CGG | + | chr1_3:57703210-57703229 | None:intergenic | 40.0% | |
| ! | CCAAGTCTTATCCCACTAAT+TGG | + | chr1_3:57703216-57703235 | None:intergenic | 40.0% |
| CCAATTAGTGGGATAAGACT+TGG | - | chr1_3:57703213-57703232 | Msa0128050:CDS | 40.0% | |
| GATCTTGTGTCCAAAGTGAA+AGG | - | chr1_3:57703377-57703396 | Msa0128050:CDS | 40.0% | |
| TTCAACCACTCCTTTCACTT+TGG | + | chr1_3:57703390-57703409 | None:intergenic | 40.0% | |
| CAAGGAACTAATGCTAGACA+AGG | - | chr1_3:57703487-57703506 | Msa0128050:CDS | 40.0% | |
| TGAGGTTGAACGTGTTTATG+AGG | - | chr1_3:57703712-57703731 | Msa0128050:intron | 40.0% | |
| !! | AGCTGAGTTGATGCTTAAGA+AGG | - | chr1_3:57703823-57703842 | Msa0128050:intron | 40.0% |
| !! | TGAGTTGATGCTTAAGAAGG+TGG | - | chr1_3:57703826-57703845 | Msa0128050:intron | 40.0% |
| AGAAATGGTAAGTTTCGCGT+TGG | + | chr1_3:57703871-57703890 | None:intergenic | 40.0% | |
| CATAAAGGCTCAGCAAGAAA+TGG | + | chr1_3:57703886-57703905 | None:intergenic | 40.0% | |
| ! | TGGGACTGGTAATGTTAAAG+AGG | - | chr1_3:57703907-57703926 | Msa0128050:intron | 40.0% |
| AAGAGGTTTATAGAGTGTGG+GGG | - | chr1_3:57703924-57703943 | Msa0128050:intron | 40.0% | |
| TGTTTAAGGAGTGGGAATCT+AGG | - | chr1_3:57704041-57704060 | Msa0128050:intron | 40.0% | |
| GGCTTACTTGAGTCAAAACA+TGG | - | chr1_3:57704105-57704124 | Msa0128050:intron | 40.0% | |
| CTTGAGTCAAAACATGGACA+AGG | - | chr1_3:57704111-57704130 | Msa0128050:intron | 40.0% | |
| !! | GAGGACCTTTCTTTAGGATT+CGG | - | chr1_3:57704173-57704192 | Msa0128050:intron | 40.0% |
| !! | AGGACCTTTCTTTAGGATTC+GGG | - | chr1_3:57704174-57704193 | Msa0128050:intron | 40.0% |
| TAGGATTCGGGAAATGTTCA+TGG | - | chr1_3:57704186-57704205 | Msa0128050:intron | 40.0% | |
| TTGGAGAAAGGTCAATTGGA+TGG | - | chr1_3:57704217-57704236 | Msa0128050:intron | 40.0% | |
| !! | AGAAAAGCACTTACAGCTTG+TGG | + | chr1_3:57704304-57704323 | None:intergenic | 40.0% |
| CCCAAGTTACAAATTCTCGT+GGG | + | chr1_3:57704491-57704510 | None:intergenic | 40.0% | |
| CCCACGAGAATTTGTAACTT+GGG | - | chr1_3:57704488-57704507 | Msa0128050:intron | 40.0% | |
| TCCCAAGTTACAAATTCTCG+TGG | + | chr1_3:57704492-57704511 | None:intergenic | 40.0% | |
| ACAAGAACATTCCCTCCTAT+TGG | + | chr1_3:57704791-57704810 | None:intergenic | 40.0% | |
| AATAGGAGGGAATGTTCTTG+TGG | - | chr1_3:57704790-57704809 | Msa0128050:five_prime_UTR | 40.0% | |
| ATAGGAGGGAATGTTCTTGT+GGG | - | chr1_3:57704791-57704810 | Msa0128050:five_prime_UTR | 40.0% | |
| AGTAGACAAAATCCCTGCTG+TGG | - | chr1_3:57702173-57702192 | Msa0128050:three_prime_UTR | 45.0% | |
| TCTATGATCGAACCACAGCA+GGG | + | chr1_3:57702188-57702207 | None:intergenic | 45.0% | |
| GGCTGAGCTTCCAAATAAGA+AGG | - | chr1_3:57702285-57702304 | Msa0128050:three_prime_UTR | 45.0% | |
| !! | TTTCTAGGTCGGCTAGTCTT+CGG | + | chr1_3:57702321-57702340 | None:intergenic | 45.0% |
| TACGATACTTTCGAAGCTCC+TGG | + | chr1_3:57702429-57702448 | None:intergenic | 45.0% | |
| AATTGTCCCTTCAGCTTGAG+TGG | + | chr1_3:57702799-57702818 | None:intergenic | 45.0% | |
| AGGATGTTGTGTTGGATGTG+TGG | - | chr1_3:57702900-57702919 | Msa0128050:CDS | 45.0% | |
| AGTCAAATCACTTGAGGCAG+AGG | - | chr1_3:57703074-57703093 | Msa0128050:CDS | 45.0% | |
| ACTAATTGGGATCGGCTACA+TGG | + | chr1_3:57703202-57703221 | None:intergenic | 45.0% | |
| ATGTAGCCGATCCCAATTAG+TGG | - | chr1_3:57703201-57703220 | Msa0128050:CDS | 45.0% | |
| TGTAGCCGATCCCAATTAGT+GGG | - | chr1_3:57703202-57703221 | Msa0128050:CDS | 45.0% | |
| ! | AGTGGGATAAGACTTGGTTG+TGG | - | chr1_3:57703219-57703238 | Msa0128050:CDS | 45.0% |
| TGTGTCCAAAGTGAAAGGAG+TGG | - | chr1_3:57703382-57703401 | Msa0128050:CDS | 45.0% | |
| TACTTGTTCTTAGCAGGAGG+AGG | + | chr1_3:57703437-57703456 | None:intergenic | 45.0% | |
| GTGTACTTGTTCTTAGCAGG+AGG | + | chr1_3:57703440-57703459 | None:intergenic | 45.0% | |
| ACCAACTGAGGAACTTTCGA+CGG | + | chr1_3:57703605-57703624 | None:intergenic | 45.0% | |
| !! | TGTGCTGCTTTGAATGACCT+TGG | - | chr1_3:57703689-57703708 | Msa0128050:intron | 45.0% |
| ! | TGCTTTGAATGACCTTGGTG+AGG | - | chr1_3:57703694-57703713 | Msa0128050:intron | 45.0% |
| AAACACGTTCAACCTCACCA+AGG | + | chr1_3:57703709-57703728 | None:intergenic | 45.0% | |
| TTCTTGCTGAGCCTTTATGC+TGG | - | chr1_3:57703887-57703906 | Msa0128050:intron | 45.0% | |
| TCTTGCTGAGCCTTTATGCT+GGG | - | chr1_3:57703888-57703907 | Msa0128050:intron | 45.0% | |
| CATTACCAGTCCCAGCATAA+AGG | + | chr1_3:57703901-57703920 | None:intergenic | 45.0% | |
| TTACAGCTTGTGGTGAAGGT+TGG | + | chr1_3:57704294-57704313 | None:intergenic | 45.0% | |
| GTTACAAATTCTCGTGGGCT+TGG | + | chr1_3:57704486-57704505 | None:intergenic | 45.0% | |
| GCCCACGAGAATTTGTAACT+TGG | - | chr1_3:57704487-57704506 | Msa0128050:intron | 45.0% | |
| ATGAGCTCAGTCCAATAGGA+GGG | - | chr1_3:57704777-57704796 | Msa0128050:five_prime_UTR | 45.0% | |
| GGAATGTTCTTGTGGGCTTA+AGG | - | chr1_3:57704798-57704817 | Msa0128050:five_prime_UTR | 45.0% | |
| CTCTATGATCGAACCACAGC+AGG | + | chr1_3:57702189-57702208 | None:intergenic | 50.0% | |
| TTCCTCCGCCGGAAATCAAA+CGG | + | chr1_3:57702231-57702250 | None:intergenic | 50.0% | |
| CTAGCCGACCTAGAAAAGAC+CGG | - | chr1_3:57702325-57702344 | Msa0128050:three_prime_UTR | 50.0% | |
| ! | TCCTCCGGTCTTTTCTAGGT+CGG | + | chr1_3:57702332-57702351 | None:intergenic | 50.0% |
| GCGATACCTCGAATGCATGA+TGG | + | chr1_3:57702456-57702475 | None:intergenic | 50.0% | |
| AAATAAGCGTAGCCGAGACG+AGG | - | chr1_3:57702880-57702899 | Msa0128050:CDS | 50.0% | |
| CCAACACAACATCCTCGTCT+CGG | + | chr1_3:57702895-57702914 | None:intergenic | 50.0% | |
| AGTACGGAGAGTAGACCAGA+TGG | - | chr1_3:57703046-57703065 | Msa0128050:CDS | 50.0% | |
| ACCGTCGAAAGTTCCTCAGT+TGG | - | chr1_3:57703601-57703620 | Msa0128050:CDS | 50.0% | |
| ! | AGATAGCTCCGATTGGTCAC+CGG | + | chr1_3:57703968-57703987 | None:intergenic | 50.0% |
| CATGGACAAGGAAGCTGTGT+CGG | - | chr1_3:57704123-57704142 | Msa0128050:intron | 50.0% | |
| GCTGCAGAGGACCTTTCTTT+AGG | - | chr1_3:57704167-57704186 | Msa0128050:intron | 50.0% | |
| !! | TGGTGCTATGAGCCACTTAG+AGG | - | chr1_3:57704237-57704256 | Msa0128050:intron | 50.0% |
| !! | ATCGCCGACTTCTGAAAGTG+CGG | + | chr1_3:57704263-57704282 | None:intergenic | 50.0% |
| GCACTTACAGCTTGTGGTGA+AGG | + | chr1_3:57704298-57704317 | None:intergenic | 50.0% | |
| ACTGCATCCGAATCATCTCC+TGG | - | chr1_3:57704424-57704443 | Msa0128050:intron | 50.0% | |
| ATGGGTGCGGTGTGTATTCA+TGG | + | chr1_3:57704526-57704545 | None:intergenic | 50.0% | |
| CTGCATGAGCTCAGTCCAAT+AGG | - | chr1_3:57704773-57704792 | Msa0128050:five_prime_UTR | 50.0% | |
| CATGAGCTCAGTCCAATAGG+AGG | - | chr1_3:57704776-57704795 | Msa0128050:five_prime_UTR | 50.0% | |
| TGTTCTTGTGGGCTTAAGGC+AGG | - | chr1_3:57704802-57704821 | Msa0128050:five_prime_UTR | 50.0% | |
| TTGTGGGCTTAAGGCAGGAT+AGG | - | chr1_3:57704807-57704826 | Msa0128050:five_prime_UTR | 50.0% | |
| ! | TACGGCCGTTTGATTTCCGG+CGG | - | chr1_3:57702223-57702242 | Msa0128050:three_prime_UTR | 55.0% |
| ! | GTTTGATTTCCGGCGGAGGA+AGG | - | chr1_3:57702230-57702249 | Msa0128050:three_prime_UTR | 55.0% |
| GCTTCTCCGACGACTATGCA+CGG | - | chr1_3:57702252-57702271 | Msa0128050:three_prime_UTR | 55.0% | |
| !! | GGTCGGCTAGTCTTCGGTAA+AGG | + | chr1_3:57702315-57702334 | None:intergenic | 55.0% |
| ! | CGGTTCCTCCGGTCTTTTCT+AGG | + | chr1_3:57702336-57702355 | None:intergenic | 55.0% |
| CTGGTTCAACGTCTGCGACA+CGG | + | chr1_3:57702356-57702375 | None:intergenic | 55.0% | |
| TGAACTCGAGAGATGCGTCC+AGG | - | chr1_3:57702408-57702427 | Msa0128050:three_prime_UTR | 55.0% | |
| GTTCCGTGTCCAACACTTGC+CGG | - | chr1_3:57702563-57702582 | Msa0128050:CDS | 55.0% | |
| !! | ACACCGGCAAGTGTTGGACA+CGG | + | chr1_3:57702569-57702588 | None:intergenic | 55.0% |
| !! | GTCGTTTAGGTGTCGGACAC+CGG | + | chr1_3:57702585-57702604 | None:intergenic | 55.0% |
| CCGAGACGAGGATGTTGTGT+TGG | - | chr1_3:57702892-57702911 | Msa0128050:CDS | 55.0% | |
| ACGGAGAGTAGACCAGATGG+AGG | - | chr1_3:57703049-57703068 | Msa0128050:CDS | 55.0% | |
| ! | TGGTAAGTTTCGCGTTGGCG+CGG | + | chr1_3:57703866-57703885 | None:intergenic | 55.0% |
| CTGAGCCTTTATGCTGGGAC+TGG | - | chr1_3:57703893-57703912 | Msa0128050:intron | 55.0% | |
| GACCCTCAAGAAGATCACCC+CGG | - | chr1_3:57703946-57703965 | Msa0128050:intron | 55.0% | |
| CACCGGGGTGATCTTCTTGA+GGG | + | chr1_3:57703951-57703970 | None:intergenic | 55.0% | |
| TCACCGGGGTGATCTTCTTG+AGG | + | chr1_3:57703952-57703971 | None:intergenic | 55.0% | |
| AGATCACCCCGGTGACCAAT+CGG | - | chr1_3:57703957-57703976 | Msa0128050:intron | 55.0% | |
| ! | ATAGCTCCGATTGGTCACCG+GGG | + | chr1_3:57703966-57703985 | None:intergenic | 55.0% |
| ! | GATAGCTCCGATTGGTCACC+GGG | + | chr1_3:57703967-57703986 | None:intergenic | 55.0% |
| !! | GTTGGTTGGTGTTGCAGTGC+AGG | - | chr1_3:57704084-57704103 | Msa0128050:intron | 55.0% |
| ! | GGAAGCTGTGTCGGTCTTTG+AGG | - | chr1_3:57704132-57704151 | Msa0128050:intron | 55.0% |
| GAAGCTCTCAAGAGCTGCAG+AGG | - | chr1_3:57704154-57704173 | Msa0128050:intron | 55.0% | |
| ! | CTGAAAGTGCGGCCTCTAAG+TGG | + | chr1_3:57704252-57704271 | None:intergenic | 55.0% |
| GAGGCCGCACTTTCAGAAGT+CGG | - | chr1_3:57704256-57704275 | Msa0128050:intron | 55.0% | |
| TCGCAGCCGTGCATAGTCGT+CGG | + | chr1_3:57702261-57702280 | None:intergenic | 60.0% | |
| ACGACTATGCACGGCTGCGA+CGG | - | chr1_3:57702261-57702280 | Msa0128050:three_prime_UTR | 60.0% | |
| GCCGACCTAGAAAAGACCGG+AGG | - | chr1_3:57702328-57702347 | Msa0128050:three_prime_UTR | 60.0% | |
| TGTCGGACACCGGCAAGTGT+TGG | + | chr1_3:57702575-57702594 | None:intergenic | 60.0% | |
| ! | GGCCGTTTGATTTCCGGCGG+AGG | - | chr1_3:57702226-57702245 | Msa0128050:three_prime_UTR | 65.0% |
| TCGGAGAAGCCTTCCTCCGC+CGG | + | chr1_3:57702242-57702261 | None:intergenic | 65.0% | |
| ACTATGCACGGCTGCGACGG+CGG | - | chr1_3:57702264-57702283 | Msa0128050:three_prime_UTR | 65.0% | |
| CGTCTGCGACACGGTTCCTC+CGG | + | chr1_3:57702347-57702366 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 57702142 | 57704833 | 57702142 | ID=Msa0128050;Name=Msa0128050 |
| chr1_3 | mRNA | 57702142 | 57704833 | 57702142 | ID=Msa0128050-mRNA-1;Parent=Msa0128050;Name=Msa0128050-mRNA-1;_AED=0.23;_eAED=0.23;_QI=75|1|1|1|1|1|2|329|480 |
| chr1_3 | exon | 57702142 | 57703661 | 57702142 | ID=Msa0128050-mRNA-1:exon:18418;Parent=Msa0128050-mRNA-1 |
| chr1_3 | exon | 57704507 | 57704833 | 57704507 | ID=Msa0128050-mRNA-1:exon:18417;Parent=Msa0128050-mRNA-1 |
| chr1_3 | five_prime_UTR | 57704759 | 57704833 | 57704759 | ID=Msa0128050-mRNA-1:five_prime_utr;Parent=Msa0128050-mRNA-1 |
| chr1_3 | CDS | 57704507 | 57704758 | 57704507 | ID=Msa0128050-mRNA-1:cds;Parent=Msa0128050-mRNA-1 |
| chr1_3 | CDS | 57702471 | 57703661 | 57702471 | ID=Msa0128050-mRNA-1:cds;Parent=Msa0128050-mRNA-1 |
| chr1_3 | three_prime_UTR | 57702142 | 57702470 | 57702142 | ID=Msa0128050-mRNA-1:three_prime_utr;Parent=Msa0128050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
