Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802000 | XP_003626150.1 | 99.517 | 207 | 1 | 0 | 1 | 207 | 1 | 207 | 3.72e-148 | 420 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802000 | sp|P41129|RL132_BRANA | 85.922 | 206 | 29 | 0 | 2 | 207 | 1 | 206 | 3.45e-131 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802000 | G7KWF6 | 99.517 | 207 | 1 | 0 | 1 | 207 | 1 | 207 | 1.78e-148 | 420 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0708630 | Msa0802000 | 0.842876 | 1.977683e-58 | -8.615850e-47 |
| Msa0802000 | Msa1351020 | 0.805705 | 1.173427e-49 | -8.615850e-47 |
| Msa0132460 | Msa0802000 | 0.842291 | 2.828872e-58 | -8.615850e-47 |
| Msa0134580 | Msa0802000 | 0.808236 | 3.419409e-50 | -8.615850e-47 |
| Msa0182050 | Msa0802000 | 0.844686 | 6.481755e-59 | -8.615850e-47 |
| Msa0182100 | Msa0802000 | 0.802654 | 5.062278e-49 | -8.615850e-47 |
| Msa0277600 | Msa0802000 | 0.803983 | 2.686388e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802000 | MtrunA17_Chr7g0271401 | 99.517 | 207 | 1 | 0 | 1 | 207 | 1 | 207 | 3.42e-152 | 420 |
| Msa0802000 | MtrunA17_Chr5g0409231 | 99.034 | 207 | 2 | 0 | 1 | 207 | 1 | 207 | 1.70e-151 | 418 |
| Msa0802000 | MtrunA17_Chr1g0155011 | 98.068 | 207 | 4 | 0 | 1 | 207 | 1 | 207 | 3.40e-150 | 415 |
| Msa0802000 | MtrunA17_Chr8g0369561 | 88.462 | 52 | 6 | 0 | 133 | 184 | 6 | 57 | 1.18e-27 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802000 | AT3G49010.3 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.92e-126 | 355 |
| Msa0802000 | AT3G49010.6 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.92e-126 | 355 |
| Msa0802000 | AT3G49010.1 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.92e-126 | 355 |
| Msa0802000 | AT3G49010.2 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.92e-126 | 355 |
| Msa0802000 | AT3G49010.7 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.92e-126 | 355 |
| Msa0802000 | AT3G49010.4 | 86.387 | 191 | 24 | 1 | 2 | 192 | 1 | 189 | 4.92e-123 | 347 |
| Msa0802000 | AT5G23900.1 | 85.484 | 186 | 27 | 0 | 2 | 187 | 1 | 186 | 1.74e-119 | 338 |
| Msa0802000 | AT3G48960.1 | 77.083 | 192 | 44 | 0 | 2 | 193 | 1 | 192 | 5.70e-109 | 311 |
| Msa0802000 | AT3G49010.5 | 61.257 | 191 | 21 | 1 | 2 | 192 | 1 | 138 | 4.17e-78 | 231 |
Find 91 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGTTTCATGTTGTATTTC+TGG | 0.038558 | 5_3:+16177433 | None:intergenic |
| AGATGAAATGAAGGCATTTA+AGG | 0.173990 | 5_3:-16175841 | Msa0802000:CDS |
| CGTCTTCTTGTCTTTCTTGC+AGG | 0.232556 | 5_3:+16177662 | None:intergenic |
| CTAGGTACCTGAGGCGGGTT+TGG | 0.249836 | 5_3:+16177945 | None:intergenic |
| TTTGTTGGTTTAACGCATTC+TGG | 0.260503 | 5_3:-16175575 | Msa0802000:three_prime_UTR |
| TAGTTTCATGTTGTATTTCT+GGG | 0.262590 | 5_3:+16177434 | None:intergenic |
| AATCTGAACTCGAGTTTCTT+AGG | 0.282264 | 5_3:-16175363 | Msa0802000:three_prime_UTR |
| TCGCCGCAAGAACCGATCTT+TGG | 0.321210 | 5_3:-16176188 | Msa0802000:CDS |
| TAACAATCATATGGGTGATT+AGG | 0.341825 | 5_3:+16175702 | None:intergenic |
| TTGACCTTGCGTGCACGTCT+TGG | 0.342253 | 5_3:+16176106 | None:intergenic |
| AAGGTTTCCTCCATGTTTAT+TGG | 0.348237 | 5_3:-16175271 | Msa0802000:three_prime_UTR |
| GCGAACAAACAAACGCCATT+TGG | 0.357834 | 5_3:-16175796 | Msa0802000:CDS |
| CGAACAAACAAACGCCATTT+GGG | 0.361720 | 5_3:-16175795 | Msa0802000:CDS |
| GAGAAGATGATGGTTGAAAA+TGG | 0.364198 | 5_3:+16177983 | None:intergenic |
| GGCCCAATTGTATACGATTC+GGG | 0.367976 | 5_3:-16178032 | Msa0802000:five_prime_UTR |
| CTCAGCAGCCCTCTTCAGTC+TGG | 0.372652 | 5_3:+16175770 | None:intergenic |
| AGACAAGAAGTGAAAACTTC+AGG | 0.375704 | 5_3:-16175736 | Msa0802000:exon |
| GGTTTGGGAGCAGGAGCAAC+TGG | 0.380183 | 5_3:+16177961 | None:intergenic |
| CCTGAGGCGGGTTTGGGAGC+AGG | 0.384071 | 5_3:+16177952 | None:intergenic |
| TGACCTTGCGTGCACGTCTT+GGG | 0.387927 | 5_3:+16176107 | None:intergenic |
| TAGGTACCTGAGGCGGGTTT+GGG | 0.390364 | 5_3:+16177946 | None:intergenic |
| TGGCCCAATTGTATACGATT+CGG | 0.394745 | 5_3:-16178033 | Msa0802000:five_prime_UTR |
| TGGGTCTGTCCATGAACAAT+AGG | 0.402566 | 5_3:+16177453 | None:intergenic |
| CCTCTCAGGCCTATTGTTCA+TGG | 0.403035 | 5_3:-16177462 | Msa0802000:CDS |
| CTATGGCTATTCAAGTTTGT+TGG | 0.410404 | 5_3:-16175590 | Msa0802000:three_prime_UTR |
| AGAGGTCCAGCTGTAGGCCT+TGG | 0.411701 | 5_3:+16177480 | None:intergenic |
| ATGTTTATTGGTGGTTCTCA+TGG | 0.414487 | 5_3:-16175259 | Msa0802000:three_prime_UTR |
| AGGCCCGAATCGTATACAAT+TGG | 0.422569 | 5_3:+16178029 | None:intergenic |
| AGAAATACAACATGAAACTA+AGG | 0.423714 | 5_3:-16177431 | Msa0802000:CDS |
| CTTCTCCCTTGAGGAGTTGA+AGG | 0.436371 | 5_3:-16177397 | Msa0802000:intron |
| CAACACAATCAAAACTTGTA+TGG | 0.437815 | 5_3:+16175299 | None:intergenic |
| GTAGCATTTGCTAGTTCCTC+AGG | 0.441712 | 5_3:+16175930 | None:intergenic |
| GTATTGCAATAACAATCATA+TGG | 0.446700 | 5_3:+16175693 | None:intergenic |
| TGGTTGATTATTTGAAGGTA+AGG | 0.457972 | 5_3:-16177772 | Msa0802000:intron |
| TGCTTGCGGAAGTGTTCGTT+AGG | 0.460343 | 5_3:+16177719 | None:intergenic |
| TCTTCAGTCTGGCACCCAAA+TGG | 0.461938 | 5_3:+16175781 | None:intergenic |
| GGCCTACAGCTGGACCTCTC+AGG | 0.464622 | 5_3:-16177476 | Msa0802000:CDS |
| CTAGGGTTGGGTCTATGTTA+AGG | 0.466292 | 5_3:+16178009 | None:intergenic |
| GATGGCTTCTCCCTCACAAT+TGG | 0.470493 | 5_3:+16175885 | None:intergenic |
| GTTTCCTCCATGTTTATTGG+TGG | 0.473921 | 5_3:-16175268 | Msa0802000:three_prime_UTR |
| TTCTTGTCTTTCTTGCAGGT+TGG | 0.486579 | 5_3:+16177666 | None:intergenic |
| CCTGCTCCCAAACCCGCCTC+AGG | 0.487866 | 5_3:-16177952 | Msa0802000:intron |
| GAGGGCTGCTGAGGCAGAGA+AGG | 0.488227 | 5_3:-16175760 | Msa0802000:CDS |
| TAAGATTACAGATGAAATGA+AGG | 0.490511 | 5_3:-16175850 | Msa0802000:CDS |
| GAGGTCCAGCTGTAGGCCTT+GGG | 0.492897 | 5_3:+16177481 | None:intergenic |
| CTTGCAGACCTTCCAAAGAT+CGG | 0.495670 | 5_3:+16176176 | None:intergenic |
| GGCCCGAATCGTATACAATT+GGG | 0.500469 | 5_3:+16178030 | None:intergenic |
| AGGCGCTAGGTACCTGAGGC+GGG | 0.502060 | 5_3:+16177940 | None:intergenic |
| GCAAATGCTACACAGGTTCA+AGG | 0.515568 | 5_3:-16175918 | Msa0802000:CDS |
| TCGACAGAAATGCCGATAGT+TGG | 0.527583 | 5_3:+16176214 | None:intergenic |
| AGAAAGACAAGAAGACGCTT+AGG | 0.531399 | 5_3:-16177656 | Msa0802000:intron |
| TTCTTCAGCTCGTCAGAAGA+AGG | 0.532934 | 5_3:-16177517 | Msa0802000:intron |
| TATTGCAATAACAATCATAT+GGG | 0.535333 | 5_3:+16175694 | None:intergenic |
| GATGGTTGAAAATGGAGACT+AGG | 0.535438 | 5_3:+16177991 | None:intergenic |
| TGAAAATGGAGACTAGGGTT+GGG | 0.536098 | 5_3:+16177997 | None:intergenic |
| ATGGTTGAAAATGGAGACTA+GGG | 0.536485 | 5_3:+16177992 | None:intergenic |
| GAGGCGCTAGGTACCTGAGG+CGG | 0.537278 | 5_3:+16177939 | None:intergenic |
| TTGAAAATGGAGACTAGGGT+TGG | 0.537985 | 5_3:+16177996 | None:intergenic |
| CAGACTGAAGAGGGCTGCTG+AGG | 0.549159 | 5_3:-16175769 | Msa0802000:CDS |
| ATGAAACTAAGGGCTGGTAA+AGG | 0.560135 | 5_3:-16177420 | Msa0802000:CDS |
| ACGAACACTTCCGCAAGCAT+TGG | 0.561260 | 5_3:-16177715 | Msa0802000:CDS |
| AAGACGTGCACGCAAGGTCA+AGG | 0.565249 | 5_3:-16176104 | Msa0802000:intron |
| TACAACATGAAACTAAGGGC+TGG | 0.568361 | 5_3:-16177426 | Msa0802000:CDS |
| CTTCCCAAGACGTGCACGCA+AGG | 0.568390 | 5_3:-16176110 | Msa0802000:CDS |
| TTCATACTTACCAATTGTGA+GGG | 0.574179 | 5_3:-16175895 | Msa0802000:CDS |
| CGCAAGAACCGATCTTTGGA+AGG | 0.577563 | 5_3:-16176184 | Msa0802000:CDS |
| AACTGAGATTCATCTTGTCA+TGG | 0.580725 | 5_3:+16175340 | None:intergenic |
| GCTTGCGGAAGTGTTCGTTA+GGG | 0.583423 | 5_3:+16177720 | None:intergenic |
| GTCTGCAAGCCAACGTGCAG+AGG | 0.583501 | 5_3:-16176162 | Msa0802000:CDS |
| TGGTAAAGGCTTCTCCCTTG+AGG | 0.585769 | 5_3:-16177406 | Msa0802000:CDS |
| TCTTGGGAAGACTACCAACT+TGG | 0.587079 | 5_3:+16176123 | None:intergenic |
| GAAGACATACAAGGCCAAGT+TGG | 0.587284 | 5_3:-16176137 | Msa0802000:CDS |
| CTTCCAAAGATCGGTTCTTG+CGG | 0.587526 | 5_3:+16176185 | None:intergenic |
| GTTCATACTTACCAATTGTG+AGG | 0.591073 | 5_3:-16175896 | Msa0802000:CDS |
| ATTTGGGTGCCAGACTGAAG+AGG | 0.592370 | 5_3:-16175779 | Msa0802000:CDS |
| GGCTGGTGATTCCACTCCTG+AGG | 0.595885 | 5_3:-16175946 | Msa0802000:CDS |
| GAAATACAACATGAAACTAA+GGG | 0.596413 | 5_3:-16177430 | Msa0802000:CDS |
| GGAGCAACTGGAGAAGATGA+TGG | 0.597124 | 5_3:+16177973 | None:intergenic |
| GGCAAAACTATGTTAAGACA+TGG | 0.603418 | 5_3:-16177694 | Msa0802000:CDS |
| ATCTTAACAAGCTCTACAGA+TGG | 0.608105 | 5_3:+16175867 | None:intergenic |
| TTTGGGTGCCAGACTGAAGA+GGG | 0.608247 | 5_3:-16175778 | Msa0802000:CDS |
| ATTTGCTAGTTCCTCAGGAG+TGG | 0.614969 | 5_3:+16175935 | None:intergenic |
| TGTCTTCAGCCTCTGCACGT+TGG | 0.625495 | 5_3:+16176153 | None:intergenic |
| ATGAGAACCACCAATAAACA+TGG | 0.633444 | 5_3:+16175261 | None:intergenic |
| GGAACTAGCAAATGCTACAC+AGG | 0.641783 | 5_3:-16175925 | Msa0802000:CDS |
| GGCCTGAGAGGTCCAGCTGT+AGG | 0.645171 | 5_3:+16177474 | None:intergenic |
| CCATGAACAATAGGCCTGAG+AGG | 0.663723 | 5_3:+16177462 | None:intergenic |
| CATAGTTCACAAAATAACAA+CGG | 0.683289 | 5_3:+16175608 | None:intergenic |
| GCAGAGGCTGAAGACATACA+AGG | 0.685449 | 5_3:-16176146 | Msa0802000:CDS |
| TTCAGCTCGTCAGAAGAAGG+CGG | 0.701987 | 5_3:-16177514 | Msa0802000:intron |
| AGAACCACCAATAAACATGG+AGG | 0.730260 | 5_3:+16175264 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTATAATAATATCATC+AGG | + | chr5_3:16176309-16176328 | None:intergenic | 10.0% |
| !! | AAAAAAAAACTCAATTAAAT+TGG | + | chr5_3:16176611-16176630 | None:intergenic | 10.0% |
| !!! | TTTAATTGAGTTTTTTTTTA+AGG | - | chr5_3:16176612-16176631 | Msa0802000:intron | 10.0% |
| !!! | AGCAAATTTTGAAAAAAAAA+CGG | - | chr5_3:16175270-16175289 | Msa0802000:three_prime_UTR | 15.0% |
| !!! | TTTTGATTTATTTGACATAA+TGG | - | chr5_3:16175789-16175808 | Msa0802000:CDS | 15.0% |
| !!! | TTTGATTTATTTGACATAAT+GGG | - | chr5_3:16175790-16175809 | Msa0802000:CDS | 15.0% |
| !! | AAAAAAAAAATCACTTTCAA+AGG | + | chr5_3:16176242-16176261 | None:intergenic | 15.0% |
| !! | AAGATATAATCTAATCTTAT+TGG | - | chr5_3:16176330-16176349 | Msa0802000:intron | 15.0% |
| !!! | AGTTATATGCTTTTAATATA+TGG | - | chr5_3:16177271-16177290 | Msa0802000:intron | 15.0% |
| !! | CATAAAACAATAAATCAGAA+AGG | + | chr5_3:16175548-16175567 | None:intergenic | 20.0% |
| !!! | CTTTCTGATTTATTGTTTTA+TGG | - | chr5_3:16175546-16175565 | Msa0802000:three_prime_UTR | 20.0% |
| !!! | TTTTATGGTTGATTATTTGA+AGG | - | chr5_3:16175561-16175580 | Msa0802000:three_prime_UTR | 20.0% |
| !!! | TTTTAAGAGTATGTGATTAA+TGG | - | chr5_3:16176209-16176228 | Msa0802000:CDS | 20.0% |
| !! | TAATCTTATTGGATAAAACT+TGG | - | chr5_3:16176341-16176360 | Msa0802000:intron | 20.0% |
| !! | AAATTAGACAGAATTGAATA+TGG | + | chr5_3:16176931-16176950 | None:intergenic | 20.0% |
| !!! | TTTCTTCTATTTTACAATGT+AGG | - | chr5_3:16177075-16177094 | Msa0802000:intron | 20.0% |
| !! | GCATTATTCTTAATTTCTTA+TGG | - | chr5_3:16177351-16177370 | Msa0802000:intron | 20.0% |
| !! | TATTGCAATAACAATCATAT+GGG | + | chr5_3:16177647-16177666 | None:intergenic | 20.0% |
| !!! | TTAGCATGTTTTATTTTCAT+TGG | - | chr5_3:16177791-16177810 | Msa0802000:intron | 20.0% |
| !!! | TTTTGATTGTGTTGTTTTAA+AGG | - | chr5_3:16178048-16178067 | Msa0802000:five_prime_UTR | 20.0% |
| ! | AAAGCACAAAAAATTGAGAT+TGG | + | chr5_3:16175444-16175463 | None:intergenic | 25.0% |
| ! | TTTGAAGGTAAGGTAAAAAA+TGG | - | chr5_3:16175576-16175595 | Msa0802000:three_prime_UTR | 25.0% |
| ! | TAGTTTCATGTTGTATTTCT+GGG | + | chr5_3:16175907-16175926 | None:intergenic | 25.0% |
| ! | TTAGTTTCATGTTGTATTTC+TGG | + | chr5_3:16175908-16175927 | None:intergenic | 25.0% |
| ! | AGAAATACAACATGAAACTA+AGG | - | chr5_3:16175907-16175926 | Msa0802000:CDS | 25.0% |
| ! | GAAATACAACATGAAACTAA+GGG | - | chr5_3:16175908-16175927 | Msa0802000:CDS | 25.0% |
| ! | ATCGAAAAGAAATATCACAT+AGG | + | chr5_3:16175987-16176006 | None:intergenic | 25.0% |
| ! | AAATTGCAAGTCACTAAAAT+CGG | - | chr5_3:16176102-16176121 | Msa0802000:intron | 25.0% |
| ! | TTAGTAGCAATATCACTATA+TGG | - | chr5_3:16176394-16176413 | Msa0802000:intron | 25.0% |
| ! | ATAGATAAAAACACTCCATA+TGG | + | chr5_3:16176576-16176595 | None:intergenic | 25.0% |
| !!! | TATGGAGTGTTTTTATCTAT+AGG | - | chr5_3:16176576-16176595 | Msa0802000:intron | 25.0% |
| !!! | GAGTTTTTTTTTAAGGTCTA+TGG | - | chr5_3:16176619-16176638 | Msa0802000:intron | 25.0% |
| !!! | ACAACTAAAGTTGATTTTGA+TGG | + | chr5_3:16176737-16176756 | None:intergenic | 25.0% |
| !!! | TTTTACTTTACCTTTTTCGA+TGG | - | chr5_3:16177041-16177060 | Msa0802000:intron | 25.0% |
| ! | AAGAAATAAACCATCGAAAA+AGG | + | chr5_3:16177054-16177073 | None:intergenic | 25.0% |
| !! | TATGGCCTTTTTCTTAATTT+TGG | - | chr5_3:16177289-16177308 | Msa0802000:intron | 25.0% |
| ! | TGGTACCAAAATTAAGAAAA+AGG | + | chr5_3:16177297-16177316 | None:intergenic | 25.0% |
| ! | TAAGATTACAGATGAAATGA+AGG | - | chr5_3:16177488-16177507 | Msa0802000:CDS | 25.0% |
| ! | GTATTGCAATAACAATCATA+TGG | + | chr5_3:16177648-16177667 | None:intergenic | 25.0% |
| ! | CATAGTTCACAAAATAACAA+CGG | + | chr5_3:16177733-16177752 | None:intergenic | 25.0% |
| !!! | CACATTTTTTTTCTTGTTGA+TGG | - | chr5_3:16177933-16177952 | Msa0802000:intron | 25.0% |
| AAAAACGGTGAATTCAATCT+TGG | - | chr5_3:16175285-16175304 | Msa0802000:three_prime_UTR | 30.0% | |
| TGGTTGATTATTTGAAGGTA+AGG | - | chr5_3:16175566-16175585 | Msa0802000:three_prime_UTR | 30.0% | |
| CAAGCTCTATGTGAAATTAT+AGG | - | chr5_3:16176276-16176295 | Msa0802000:intron | 30.0% | |
| CAATATCACTATATGGAAAC+TGG | - | chr5_3:16176401-16176420 | Msa0802000:intron | 30.0% | |
| CAAACAGAAAAACACTCTAT+AGG | + | chr5_3:16176453-16176472 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTAAGGTCTATGGC+TGG | - | chr5_3:16176623-16176642 | Msa0802000:intron | 30.0% |
| AAGAAATCATGGATCATACA+AGG | + | chr5_3:16176817-16176836 | None:intergenic | 30.0% | |
| GTGTATAAGCAAAGAAATCA+TGG | + | chr5_3:16176828-16176847 | None:intergenic | 30.0% | |
| !! | ATAGTGTTTTCACTTTTCAG+TGG | + | chr5_3:16176852-16176871 | None:intergenic | 30.0% |
| AGATCACTACTGAGAATATT+CGG | + | chr5_3:16176905-16176924 | None:intergenic | 30.0% | |
| GATAAAAGAGTAAAAGACCT+TGG | - | chr5_3:16176963-16176982 | Msa0802000:intron | 30.0% | |
| TACAAATTTATCAGCAACGA+TGG | + | chr5_3:16177317-16177336 | None:intergenic | 30.0% | |
| CGTTGCTGATAAATTTGTAA+AGG | - | chr5_3:16177318-16177337 | Msa0802000:intron | 30.0% | |
| TTCATACTTACCAATTGTGA+GGG | - | chr5_3:16177443-16177462 | Msa0802000:CDS | 30.0% | |
| !! | AGATGAAATGAAGGCATTTA+AGG | - | chr5_3:16177497-16177516 | Msa0802000:CDS | 30.0% |
| TAACAATCATATGGGTGATT+AGG | + | chr5_3:16177639-16177658 | None:intergenic | 30.0% | |
| !!! | CGTTGTTATTTTGTGAACTA+TGG | - | chr5_3:16177731-16177750 | Msa0802000:CDS | 30.0% |
| CAACACAATCAAAACTTGTA+TGG | + | chr5_3:16178042-16178061 | None:intergenic | 30.0% | |
| ATGGTTGAAAATGGAGACTA+GGG | + | chr5_3:16175349-16175368 | None:intergenic | 35.0% | |
| ! | GAGAAGATGATGGTTGAAAA+TGG | + | chr5_3:16175358-16175377 | None:intergenic | 35.0% |
| ATTGAGATTGGAACGTGTAA+GGG | + | chr5_3:16175432-16175451 | None:intergenic | 35.0% | |
| AATTGAGATTGGAACGTGTA+AGG | + | chr5_3:16175433-16175452 | None:intergenic | 35.0% | |
| GGCAAAACTATGTTAAGACA+TGG | - | chr5_3:16175644-16175663 | Msa0802000:three_prime_UTR | 35.0% | |
| ! | TTTTACCTTCAACTCCTCAA+GGG | + | chr5_3:16175949-16175968 | None:intergenic | 35.0% |
| ! | ATTTTACCTTCAACTCCTCA+AGG | + | chr5_3:16175950-16175969 | None:intergenic | 35.0% |
| GCTATGCATTATCAGAAAAG+TGG | - | chr5_3:16176022-16176041 | Msa0802000:intron | 35.0% | |
| !!! | AAGTGGTTTTGATGCTCTTT+TGG | - | chr5_3:16176039-16176058 | Msa0802000:intron | 35.0% |
| CTGCAATCTACATCAATACA+TGG | - | chr5_3:16176487-16176506 | Msa0802000:intron | 35.0% | |
| TAAAAACACTCCATATGGAC+AGG | + | chr5_3:16176571-16176590 | None:intergenic | 35.0% | |
| AAATCATGGATCATACAAGG+AGG | + | chr5_3:16176814-16176833 | None:intergenic | 35.0% | |
| ! | TATTTTACAATGTAGGCTGC+AGG | - | chr5_3:16177082-16177101 | Msa0802000:intron | 35.0% |
| ! | ATAGTTGGAGCAAGCTTTTT+GGG | + | chr5_3:16177112-16177131 | None:intergenic | 35.0% |
| ! | AAAAAGCTTGCTCCAACTAT+CGG | - | chr5_3:16177112-16177131 | Msa0802000:intron | 35.0% |
| CAGCCTGGAAATATAAAACA+GGG | + | chr5_3:16177377-16177396 | None:intergenic | 35.0% | |
| GTTCATACTTACCAATTGTG+AGG | - | chr5_3:16177442-16177461 | Msa0802000:CDS | 35.0% | |
| ATCTTAACAAGCTCTACAGA+TGG | + | chr5_3:16177474-16177493 | None:intergenic | 35.0% | |
| AGACAAGAAGTGAAAACTTC+AGG | - | chr5_3:16177602-16177621 | Msa0802000:intron | 35.0% | |
| ! | CTATGGCTATTCAAGTTTGT+TGG | - | chr5_3:16177748-16177767 | Msa0802000:exon | 35.0% |
| !! | TTTGTTGGTTTAACGCATTC+TGG | - | chr5_3:16177763-16177782 | Msa0802000:intron | 35.0% |
| AATCTGAACTCGAGTTTCTT+AGG | - | chr5_3:16177975-16177994 | Msa0802000:five_prime_UTR | 35.0% | |
| AACTGAGATTCATCTTGTCA+TGG | + | chr5_3:16178001-16178020 | None:intergenic | 35.0% | |
| AAGGTTTCCTCCATGTTTAT+TGG | - | chr5_3:16178067-16178086 | Msa0802000:five_prime_UTR | 35.0% | |
| ATGAGAACCACCAATAAACA+TGG | + | chr5_3:16178080-16178099 | None:intergenic | 35.0% | |
| ! | ATGTTTATTGGTGGTTCTCA+TGG | - | chr5_3:16178079-16178098 | Msa0802000:five_prime_UTR | 35.0% |
| TGGCCCAATTGTATACGATT+CGG | - | chr5_3:16175305-16175324 | Msa0802000:three_prime_UTR | 40.0% | |
| TGAAAATGGAGACTAGGGTT+GGG | + | chr5_3:16175344-16175363 | None:intergenic | 40.0% | |
| TTGAAAATGGAGACTAGGGT+TGG | + | chr5_3:16175345-16175364 | None:intergenic | 40.0% | |
| GATGGTTGAAAATGGAGACT+AGG | + | chr5_3:16175350-16175369 | None:intergenic | 40.0% | |
| !! | CATAGTTTTGCCAATGCTTG+CGG | + | chr5_3:16175636-16175655 | None:intergenic | 40.0% |
| TTCTTGTCTTTCTTGCAGGT+TGG | + | chr5_3:16175675-16175694 | None:intergenic | 40.0% | |
| AGAAAGACAAGAAGACGCTT+AGG | - | chr5_3:16175682-16175701 | Msa0802000:three_prime_UTR | 40.0% | |
| TACAACATGAAACTAAGGGC+TGG | - | chr5_3:16175912-16175931 | Msa0802000:CDS | 40.0% | |
| ! | ATGAAACTAAGGGCTGGTAA+AGG | - | chr5_3:16175918-16175937 | Msa0802000:CDS | 40.0% |
| CATGTAAATGCGAAGACACA+GGG | + | chr5_3:16176371-16176390 | None:intergenic | 40.0% | |
| TATGGCTGGCATTAATCGTA+TGG | - | chr5_3:16176637-16176656 | Msa0802000:intron | 40.0% | |
| TTTAAGAACCCTGACCATCA+AGG | - | chr5_3:16176662-16176681 | Msa0802000:intron | 40.0% | |
| TACTAGATGCACTCAAACCA+AGG | + | chr5_3:16176983-16177002 | None:intergenic | 40.0% | |
| TGGTTTGAGTGCATCTAGTA+TGG | - | chr5_3:16176983-16177002 | Msa0802000:intron | 40.0% | |
| ! | GATAGTTGGAGCAAGCTTTT+TGG | + | chr5_3:16177113-16177132 | None:intergenic | 40.0% |
| ! | TGGCCCTGTTTTATATTTCC+AGG | - | chr5_3:16177371-16177390 | Msa0802000:intron | 40.0% |
| CCAGCCTGGAAATATAAAAC+AGG | + | chr5_3:16177378-16177397 | None:intergenic | 40.0% | |
| ! | CCTGTTTTATATTTCCAGGC+TGG | - | chr5_3:16177375-16177394 | Msa0802000:intron | 40.0% |
| CGAACAAACAAACGCCATTT+GGG | - | chr5_3:16177543-16177562 | Msa0802000:intron | 40.0% | |
| GTTTCCTCCATGTTTATTGG+TGG | - | chr5_3:16178070-16178089 | Msa0802000:five_prime_UTR | 40.0% | |
| AGAACCACCAATAAACATGG+AGG | + | chr5_3:16178077-16178096 | None:intergenic | 40.0% | |
| GGCCCAATTGTATACGATTC+GGG | - | chr5_3:16175306-16175325 | Msa0802000:three_prime_UTR | 45.0% | |
| GGCCCGAATCGTATACAATT+GGG | + | chr5_3:16175311-16175330 | None:intergenic | 45.0% | |
| AGGCCCGAATCGTATACAAT+TGG | + | chr5_3:16175312-16175331 | None:intergenic | 45.0% | |
| CTAGGGTTGGGTCTATGTTA+AGG | + | chr5_3:16175332-16175351 | None:intergenic | 45.0% | |
| AACGTGTAAGGGAAAGTGAG+AGG | + | chr5_3:16175421-16175440 | None:intergenic | 45.0% | |
| CGTCTTCTTGTCTTTCTTGC+AGG | + | chr5_3:16175679-16175698 | None:intergenic | 45.0% | |
| TTCTTCAGCTCGTCAGAAGA+AGG | - | chr5_3:16175821-16175840 | Msa0802000:CDS | 45.0% | |
| TGGGTCTGTCCATGAACAAT+AGG | + | chr5_3:16175888-16175907 | None:intergenic | 45.0% | |
| CCATGTAAATGCGAAGACAC+AGG | + | chr5_3:16176372-16176391 | None:intergenic | 45.0% | |
| CCTGTGTCTTCGCATTTACA+TGG | - | chr5_3:16176369-16176388 | Msa0802000:intron | 45.0% | |
| ! | ACTTGACAACGGGTTTGTAC+AGG | + | chr5_3:16176542-16176561 | None:intergenic | 45.0% |
| !! | ACAGGTTGGTCACTTGACAA+CGG | + | chr5_3:16176553-16176572 | None:intergenic | 45.0% |
| AAGTGACCAACCTGTCCATA+TGG | - | chr5_3:16176558-16176577 | Msa0802000:intron | 45.0% | |
| AACACTCCATATGGACAGGT+TGG | + | chr5_3:16176567-16176586 | None:intergenic | 45.0% | |
| ACCATCAAGGTCTAGGTCTA+TGG | - | chr5_3:16176675-16176694 | Msa0802000:intron | 45.0% | |
| TCGACAGAAATGCCGATAGT+TGG | + | chr5_3:16177127-16177146 | None:intergenic | 45.0% | |
| ! | CTTCCAAAGATCGGTTCTTG+CGG | + | chr5_3:16177156-16177175 | None:intergenic | 45.0% |
| CTTGCAGACCTTCCAAAGAT+CGG | + | chr5_3:16177165-16177184 | None:intergenic | 45.0% | |
| GAAGACATACAAGGCCAAGT+TGG | - | chr5_3:16177201-16177220 | Msa0802000:intron | 45.0% | |
| TCTTGGGAAGACTACCAACT+TGG | + | chr5_3:16177218-16177237 | None:intergenic | 45.0% | |
| ! | ATTTGCTAGTTCCTCAGGAG+TGG | + | chr5_3:16177406-16177425 | None:intergenic | 45.0% |
| ! | GTAGCATTTGCTAGTTCCTC+AGG | + | chr5_3:16177411-16177430 | None:intergenic | 45.0% |
| GGAACTAGCAAATGCTACAC+AGG | - | chr5_3:16177413-16177432 | Msa0802000:CDS | 45.0% | |
| GCAAATGCTACACAGGTTCA+AGG | - | chr5_3:16177420-16177439 | Msa0802000:CDS | 45.0% | |
| GCGAACAAACAAACGCCATT+TGG | - | chr5_3:16177542-16177561 | Msa0802000:intron | 45.0% | |
| GGAGCAACTGGAGAAGATGA+TGG | + | chr5_3:16175368-16175387 | None:intergenic | 50.0% | |
| !! | GCTTGCGGAAGTGTTCGTTA+GGG | + | chr5_3:16175621-16175640 | None:intergenic | 50.0% |
| !! | TGCTTGCGGAAGTGTTCGTT+AGG | + | chr5_3:16175622-16175641 | None:intergenic | 50.0% |
| ACGAACACTTCCGCAAGCAT+TGG | - | chr5_3:16175623-16175642 | Msa0802000:three_prime_UTR | 50.0% | |
| TTCAGCTCGTCAGAAGAAGG+CGG | - | chr5_3:16175824-16175843 | Msa0802000:CDS | 50.0% | |
| ! | AGGCGGTGAAGATTTTCCCA+AGG | - | chr5_3:16175841-16175860 | Msa0802000:CDS | 50.0% |
| ! | ATTTTCCCAAGGCCTACAGC+TGG | - | chr5_3:16175852-16175871 | Msa0802000:CDS | 50.0% |
| CCATGAACAATAGGCCTGAG+AGG | + | chr5_3:16175879-16175898 | None:intergenic | 50.0% | |
| CCTCTCAGGCCTATTGTTCA+TGG | - | chr5_3:16175876-16175895 | Msa0802000:CDS | 50.0% | |
| TGGTAAAGGCTTCTCCCTTG+AGG | - | chr5_3:16175932-16175951 | Msa0802000:CDS | 50.0% | |
| CTTCTCCCTTGAGGAGTTGA+AGG | - | chr5_3:16175941-16175960 | Msa0802000:CDS | 50.0% | |
| !! | CAGGTTGGTCACTTGACAAC+GGG | + | chr5_3:16176552-16176571 | None:intergenic | 50.0% |
| AACCCTGACCATCAAGGTCT+AGG | - | chr5_3:16176668-16176687 | Msa0802000:intron | 50.0% | |
| ! | GACCTAGACCTTGATGGTCA+GGG | + | chr5_3:16176673-16176692 | None:intergenic | 50.0% |
| ! | AGACCTAGACCTTGATGGTC+AGG | + | chr5_3:16176674-16176693 | None:intergenic | 50.0% |
| GCCATAGACCTAGACCTTGA+TGG | + | chr5_3:16176679-16176698 | None:intergenic | 50.0% | |
| TCAAGGTCTAGGTCTATGGC+TGG | - | chr5_3:16176679-16176698 | Msa0802000:intron | 50.0% | |
| CACCAATCTCCAATGTACGC+AGG | - | chr5_3:16176784-16176803 | Msa0802000:intron | 50.0% | |
| CACCTGCGTACATTGGAGAT+TGG | + | chr5_3:16176789-16176808 | None:intergenic | 50.0% | |
| CGCAAGAACCGATCTTTGGA+AGG | - | chr5_3:16177154-16177173 | Msa0802000:intron | 50.0% | |
| GCAGAGGCTGAAGACATACA+AGG | - | chr5_3:16177192-16177211 | Msa0802000:intron | 50.0% | |
| GATGGCTTCTCCCTCACAAT+TGG | + | chr5_3:16177456-16177475 | None:intergenic | 50.0% | |
| TCTTCAGTCTGGCACCCAAA+TGG | + | chr5_3:16177560-16177579 | None:intergenic | 50.0% | |
| ATTTGGGTGCCAGACTGAAG+AGG | - | chr5_3:16177559-16177578 | Msa0802000:intron | 50.0% | |
| TTTGGGTGCCAGACTGAAGA+GGG | - | chr5_3:16177560-16177579 | Msa0802000:intron | 50.0% | |
| ! | TAGGTACCTGAGGCGGGTTT+GGG | + | chr5_3:16175395-16175414 | None:intergenic | 55.0% |
| !! | AAGGGAAAGTGAGAGGCGCT+AGG | + | chr5_3:16175414-16175433 | None:intergenic | 55.0% |
| GGAGGTTCACCTGCGTACAT+TGG | + | chr5_3:16176796-16176815 | None:intergenic | 55.0% | |
| TCGCCGCAAGAACCGATCTT+TGG | - | chr5_3:16177150-16177169 | Msa0802000:intron | 55.0% | |
| TGTCTTCAGCCTCTGCACGT+TGG | + | chr5_3:16177188-16177207 | None:intergenic | 55.0% | |
| TGACCTTGCGTGCACGTCTT+GGG | + | chr5_3:16177234-16177253 | None:intergenic | 55.0% | |
| TTGACCTTGCGTGCACGTCT+TGG | + | chr5_3:16177235-16177254 | None:intergenic | 55.0% | |
| AAGACGTGCACGCAAGGTCA+AGG | - | chr5_3:16177234-16177253 | Msa0802000:intron | 55.0% | |
| GGTTTGGGAGCAGGAGCAAC+TGG | + | chr5_3:16175380-16175399 | None:intergenic | 60.0% | |
| ! | CTAGGTACCTGAGGCGGGTT+TGG | + | chr5_3:16175396-16175415 | None:intergenic | 60.0% |
| !! | TGAGAGGCGCTAGGTACCTG+AGG | + | chr5_3:16175405-16175424 | None:intergenic | 60.0% |
| GAGGTCCAGCTGTAGGCCTT+GGG | + | chr5_3:16175860-16175879 | None:intergenic | 60.0% | |
| AGAGGTCCAGCTGTAGGCCT+TGG | + | chr5_3:16175861-16175880 | None:intergenic | 60.0% | |
| GTCTGCAAGCCAACGTGCAG+AGG | - | chr5_3:16177176-16177195 | Msa0802000:intron | 60.0% | |
| CTTCCCAAGACGTGCACGCA+AGG | - | chr5_3:16177228-16177247 | Msa0802000:intron | 60.0% | |
| CAGGAGTGGAATCACCAGCC+TGG | + | chr5_3:16177392-16177411 | None:intergenic | 60.0% | |
| GGCTGGTGATTCCACTCCTG+AGG | - | chr5_3:16177392-16177411 | Msa0802000:intron | 60.0% | |
| CTCAGCAGCCCTCTTCAGTC+TGG | + | chr5_3:16177571-16177590 | None:intergenic | 60.0% | |
| CAGACTGAAGAGGGCTGCTG+AGG | - | chr5_3:16177569-16177588 | Msa0802000:intron | 60.0% | |
| AGGCGCTAGGTACCTGAGGC+GGG | + | chr5_3:16175401-16175420 | None:intergenic | 65.0% | |
| ! | GAGGCGCTAGGTACCTGAGG+CGG | + | chr5_3:16175402-16175421 | None:intergenic | 65.0% |
| GGCCTACAGCTGGACCTCTC+AGG | - | chr5_3:16175862-16175881 | Msa0802000:CDS | 65.0% | |
| GGCCTGAGAGGTCCAGCTGT+AGG | + | chr5_3:16175867-16175886 | None:intergenic | 65.0% | |
| GAGGGCTGCTGAGGCAGAGA+AGG | - | chr5_3:16177578-16177597 | Msa0802000:intron | 65.0% | |
| ! | CCTGAGGCGGGTTTGGGAGC+AGG | + | chr5_3:16175389-16175408 | None:intergenic | 70.0% |
| CCTGCTCCCAAACCCGCCTC+AGG | - | chr5_3:16175386-16175405 | Msa0802000:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 16175249 | 16178111 | 16175249 | ID=Msa0802000;Name=Msa0802000 |
| chr5_3 | mRNA | 16175249 | 16178111 | 16175249 | ID=Msa0802000-mRNA-1;Parent=Msa0802000;Name=Msa0802000-mRNA-1;_AED=0.05;_eAED=0.05;_QI=175|1|1|1|0.6|0.33|6|453|207 |
| chr5_3 | exon | 16175249 | 16175402 | 16175249 | ID=Msa0802000-mRNA-1:exon:6767;Parent=Msa0802000-mRNA-1 |
| chr5_3 | exon | 16175447 | 16175967 | 16175447 | ID=Msa0802000-mRNA-1:exon:6766;Parent=Msa0802000-mRNA-1 |
| chr5_3 | exon | 16176105 | 16176263 | 16176105 | ID=Msa0802000-mRNA-1:exon:6765;Parent=Msa0802000-mRNA-1 |
| chr5_3 | exon | 16177398 | 16177531 | 16177398 | ID=Msa0802000-mRNA-1:exon:6764;Parent=Msa0802000-mRNA-1 |
| chr5_3 | exon | 16177657 | 16177781 | 16177657 | ID=Msa0802000-mRNA-1:exon:6763;Parent=Msa0802000-mRNA-1 |
| chr5_3 | exon | 16177953 | 16178111 | 16177953 | ID=Msa0802000-mRNA-1:exon:6762;Parent=Msa0802000-mRNA-1 |
| chr5_3 | five_prime_UTR | 16177953 | 16178111 | 16177953 | ID=Msa0802000-mRNA-1:five_prime_utr;Parent=Msa0802000-mRNA-1 |
| chr5_3 | five_prime_UTR | 16177766 | 16177781 | 16177766 | ID=Msa0802000-mRNA-1:five_prime_utr;Parent=Msa0802000-mRNA-1 |
| chr5_3 | CDS | 16177657 | 16177765 | 16177657 | ID=Msa0802000-mRNA-1:cds;Parent=Msa0802000-mRNA-1 |
| chr5_3 | CDS | 16177398 | 16177531 | 16177398 | ID=Msa0802000-mRNA-1:cds;Parent=Msa0802000-mRNA-1 |
| chr5_3 | CDS | 16176105 | 16176263 | 16176105 | ID=Msa0802000-mRNA-1:cds;Parent=Msa0802000-mRNA-1 |
| chr5_3 | CDS | 16175746 | 16175967 | 16175746 | ID=Msa0802000-mRNA-1:cds;Parent=Msa0802000-mRNA-1 |
| chr5_3 | three_prime_UTR | 16175447 | 16175745 | 16175447 | ID=Msa0802000-mRNA-1:three_prime_utr;Parent=Msa0802000-mRNA-1 |
| chr5_3 | three_prime_UTR | 16175249 | 16175402 | 16175249 | ID=Msa0802000-mRNA-1:three_prime_utr;Parent=Msa0802000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
