Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351020 | XP_003593950.2 | 99.338 | 151 | 1 | 0 | 33 | 183 | 1 | 151 | 1.27e-103 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351020 | sp|O22584|RS14_LUPLU | 95.652 | 138 | 6 | 0 | 35 | 172 | 2 | 139 | 4.15e-92 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351020 | G7IPY3 | 99.338 | 151 | 1 | 0 | 33 | 183 | 1 | 151 | 6.07e-104 | 304 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa1351020 | 0.892293 | 1.814994e-74 | -8.615850e-47 |
| Msa0003330 | Msa1351020 | 0.875256 | 3.556625e-68 | -8.615850e-47 |
| Msa0027590 | Msa1351020 | 0.871482 | 6.606241e-67 | -8.615850e-47 |
| Msa0040220 | Msa1351020 | 0.819141 | 1.357376e-52 | -8.615850e-47 |
| Msa0042510 | Msa1351020 | 0.843099 | 1.725105e-58 | -8.615850e-47 |
| Msa0071640 | Msa1351020 | 0.812248 | 4.665174e-51 | -8.615850e-47 |
| Msa0075350 | Msa1351020 | 0.806935 | 6.458826e-50 | -8.615850e-47 |
| Msa0079560 | Msa1351020 | 0.851128 | 1.085479e-60 | -8.615850e-47 |
| Msa0086160 | Msa1351020 | 0.855503 | 6.041442e-62 | -8.615850e-47 |
| Msa0087910 | Msa1351020 | 0.844890 | 5.710686e-59 | -8.615850e-47 |
| Msa0094210 | Msa1351020 | 0.845767 | 3.307249e-59 | -8.615850e-47 |
| Msa0114600 | Msa1351020 | 0.875038 | 4.221106e-68 | -8.615850e-47 |
| Msa0116600 | Msa1351020 | 0.804862 | 1.761754e-49 | -8.615850e-47 |
| Msa0116690 | Msa1351020 | 0.806488 | 8.026659e-50 | -8.615850e-47 |
| Msa1351020 | Msa1351910 | 0.848544 | 5.728668e-60 | -8.615850e-47 |
| Msa1351020 | Msa1353300 | 0.842031 | 3.313444e-58 | -8.615850e-47 |
| Msa1351020 | Msa1358710 | 0.827642 | 1.397624e-54 | -8.615850e-47 |
| Msa1351020 | Msa1363910 | 0.860359 | 2.182459e-63 | -8.615850e-47 |
| Msa1351020 | Msa1363930 | 0.807172 | 5.754969e-50 | -8.615850e-47 |
| Msa1351020 | Msa1367540 | 0.834891 | 2.305052e-56 | -8.615850e-47 |
| Msa1351020 | Msa1368920 | 0.829001 | 6.570783e-55 | -8.615850e-47 |
| Msa1351020 | Msa1385480 | 0.890752 | 7.413077e-74 | -8.615850e-47 |
| Msa1351020 | Msa1387750 | 0.836354 | 9.831221e-57 | -8.615850e-47 |
| Msa1351020 | Msa1390760 | 0.919275 | 5.516804e-87 | -8.615850e-47 |
| Msa1351020 | Msa1403520 | 0.806884 | 6.623274e-50 | -8.615850e-47 |
| Msa1351020 | Msa1407550 | 0.910055 | 2.873484e-82 | -8.615850e-47 |
| Msa1351020 | Msa1413570 | 0.906823 | 9.827034e-81 | -8.615850e-47 |
| Msa1351020 | Msa1421510 | 0.816493 | 5.375086e-52 | -8.615850e-47 |
| Msa1351020 | Msa1424570 | 0.877488 | 6.039013e-69 | -8.615850e-47 |
| Msa1351020 | Msa1425070 | 0.819223 | 1.300361e-52 | -8.615850e-47 |
| Msa1351020 | Msa1432310 | 0.936564 | 1.420104e-97 | -8.615850e-47 |
| Msa1351020 | Msa1446410 | 0.891276 | 4.604264e-74 | -8.615850e-47 |
| Msa1351020 | Msa1446510 | 0.852548 | 4.295307e-61 | -8.615850e-47 |
| Msa1351020 | Msa1449160 | 0.844254 | 8.470153e-59 | -8.615850e-47 |
| Msa1351020 | Msa1450560 | 0.868040 | 8.769364e-66 | -8.615850e-47 |
| Msa1351020 | Msa1463570 | 0.902478 | 9.308225e-79 | -8.615850e-47 |
| Msa1351020 | Msa1465700 | 0.881435 | 2.406788e-70 | -8.615850e-47 |
| Msa0602900 | Msa1351020 | 0.904286 | 1.437852e-79 | -8.615850e-47 |
| Msa0605600 | Msa1351020 | 0.829516 | 4.928402e-55 | -8.615850e-47 |
| Msa0605890 | Msa1351020 | 0.909189 | 7.494209e-82 | -8.615850e-47 |
| Msa0609120 | Msa1351020 | 0.839070 | 1.973631e-57 | -8.615850e-47 |
| Msa0619230 | Msa1351020 | 0.919227 | 5.855988e-87 | -8.615850e-47 |
| Msa0621190 | Msa1351020 | 0.842504 | 2.484206e-58 | -8.615850e-47 |
| Msa0622230 | Msa1351020 | 0.825631 | 4.219735e-54 | -8.615850e-47 |
| Msa0643960 | Msa1351020 | 0.905992 | 2.387476e-80 | -8.615850e-47 |
| Msa0649890 | Msa1351020 | 0.859122 | 5.144482e-63 | -8.615850e-47 |
| Msa0653060 | Msa1351020 | 0.817939 | 2.541813e-52 | -8.615850e-47 |
| Msa0656450 | Msa1351020 | 0.898898 | 3.376074e-77 | -8.615850e-47 |
| Msa0663400 | Msa1351020 | 0.868529 | 6.102005e-66 | -8.615850e-47 |
| Msa0681220 | Msa1351020 | 0.822588 | 2.185647e-53 | -8.615850e-47 |
| Msa0686550 | Msa1351020 | 0.867328 | 1.484538e-65 | -8.615850e-47 |
| Msa0691760 | Msa1351020 | 0.857810 | 1.266564e-62 | -8.615850e-47 |
| Msa0694400 | Msa1351020 | 0.895539 | 8.703460e-76 | -8.615850e-47 |
| Msa0704860 | Msa1351020 | 0.908728 | 1.243999e-81 | -8.615850e-47 |
| Msa0708630 | Msa1351020 | 0.906391 | 1.560358e-80 | -8.615850e-47 |
| Msa0718560 | Msa1351020 | 0.804894 | 1.735264e-49 | -8.615850e-47 |
| Msa0741510 | Msa1351020 | 0.840905 | 6.559155e-58 | -8.615850e-47 |
| Msa0748350 | Msa1351020 | 0.840981 | 6.266374e-58 | -8.615850e-47 |
| Msa0749000 | Msa1351020 | 0.810015 | 1.422245e-50 | -8.615850e-47 |
| Msa0758420 | Msa1351020 | 0.815932 | 7.176242e-52 | -8.615850e-47 |
| Msa0759660 | Msa1351020 | 0.801682 | 8.023827e-49 | -8.615850e-47 |
| Msa0788380 | Msa1351020 | 0.828288 | 9.770417e-55 | -8.615850e-47 |
| Msa0790450 | Msa1351020 | 0.865800 | 4.540651e-65 | -8.615850e-47 |
| Msa0796490 | Msa1351020 | 0.823292 | 1.498380e-53 | -8.615850e-47 |
| Msa0802000 | Msa1351020 | 0.805705 | 1.173427e-49 | -8.615850e-47 |
| Msa0822580 | Msa1351020 | 0.819275 | 1.264786e-52 | -8.615850e-47 |
| Msa0834220 | Msa1351020 | 0.831874 | 1.303438e-55 | -8.615850e-47 |
| Msa0838070 | Msa1351020 | 0.806243 | 9.043910e-50 | -8.615850e-47 |
| Msa0123290 | Msa1351020 | 0.862446 | 5.039510e-64 | -8.615850e-47 |
| Msa0127230 | Msa1351020 | 0.836961 | 6.884844e-57 | -8.615850e-47 |
| Msa0128330 | Msa1351020 | 0.911547 | 5.374302e-83 | -8.615850e-47 |
| Msa0128750 | Msa1351020 | 0.806029 | 1.003291e-49 | -8.615850e-47 |
| Msa0132460 | Msa1351020 | 0.904995 | 6.843403e-80 | -8.615850e-47 |
| Msa0134580 | Msa1351020 | 0.881185 | 2.960222e-70 | -8.615850e-47 |
| Msa0146610 | Msa1351020 | 0.837137 | 6.206367e-57 | -8.615850e-47 |
| Msa0167860 | Msa1351020 | 0.937303 | 4.313421e-98 | -8.615850e-47 |
| Msa0168320 | Msa1351020 | 0.870875 | 1.047973e-66 | -8.615850e-47 |
| Msa0174580 | Msa1351020 | 0.908191 | 2.239363e-81 | -8.615850e-47 |
| Msa0182050 | Msa1351020 | 0.906240 | 1.833349e-80 | -8.615850e-47 |
| Msa0182100 | Msa1351020 | 0.905688 | 3.294708e-80 | -8.615850e-47 |
| Msa0183840 | Msa1351020 | 0.851423 | 8.961266e-61 | -8.615850e-47 |
| Msa0188740 | Msa1351020 | 0.831502 | 1.609511e-55 | -8.615850e-47 |
| Msa0191450 | Msa1351020 | 0.889648 | 2.007310e-73 | -8.615850e-47 |
| Msa0191550 | Msa1351020 | 0.910678 | 1.431613e-82 | -8.615850e-47 |
| Msa0192300 | Msa1351020 | 0.902026 | 1.476302e-78 | -8.615850e-47 |
| Msa0194940 | Msa1351020 | 0.877042 | 8.629859e-69 | -8.615850e-47 |
| Msa0195030 | Msa1351020 | 0.834810 | 2.417089e-56 | -8.615850e-47 |
| Msa0225350 | Msa1351020 | 0.809283 | 2.042776e-50 | -8.615850e-47 |
| Msa0233550 | Msa1351020 | 0.867380 | 1.427815e-65 | -8.615850e-47 |
| Msa0235050 | Msa1351020 | 0.828652 | 7.980647e-55 | -8.615850e-47 |
| Msa0237180 | Msa1351020 | 0.834593 | 2.740188e-56 | -8.615850e-47 |
| Msa1227350 | Msa1351020 | 0.823274 | 1.512656e-53 | -8.615850e-47 |
| Msa1235950 | Msa1351020 | 0.886542 | 3.124596e-72 | -8.615850e-47 |
| Msa1235980 | Msa1351020 | 0.891313 | 4.453502e-74 | -8.615850e-47 |
| Msa1237040 | Msa1351020 | 0.876193 | 1.696874e-68 | -8.615850e-47 |
| Msa1240270 | Msa1351020 | 0.804409 | 2.190589e-49 | -8.615850e-47 |
| Msa1245270 | Msa1351020 | 0.806609 | 7.569643e-50 | -8.615850e-47 |
| Msa1255830 | Msa1351020 | 0.815003 | 1.154772e-51 | -8.615850e-47 |
| Msa1255850 | Msa1351020 | 0.824407 | 8.207544e-54 | -8.615850e-47 |
| Msa1258540 | Msa1351020 | 0.843463 | 1.379513e-58 | -8.615850e-47 |
| Msa1269250 | Msa1351020 | -0.806127 | 9.566527e-50 | -8.615850e-47 |
| Msa1270640 | Msa1351020 | 0.817359 | 3.436179e-52 | -8.615850e-47 |
| Msa1270710 | Msa1351020 | 0.817116 | 3.897202e-52 | -8.615850e-47 |
| Msa1278130 | Msa1351020 | 0.805085 | 1.582467e-49 | -8.615850e-47 |
| Msa1284060 | Msa1351020 | 0.813841 | 2.086858e-51 | -8.615850e-47 |
| Msa1284800 | Msa1351020 | 0.827184 | 1.800187e-54 | -8.615850e-47 |
| Msa1296090 | Msa1351020 | 0.847450 | 1.147611e-59 | -8.615850e-47 |
| Msa1311400 | Msa1351020 | 0.814574 | 1.437550e-51 | -8.615850e-47 |
| Msa1316100 | Msa1351020 | 0.839126 | 1.909441e-57 | -8.615850e-47 |
| Msa1317390 | Msa1351020 | 0.892251 | 1.885761e-74 | -8.615850e-47 |
| Msa1330730 | Msa1351020 | 0.853165 | 2.861657e-61 | -8.615850e-47 |
| Msa1341780 | Msa1351020 | 0.834665 | 2.628646e-56 | -8.615850e-47 |
| Msa0371490 | Msa1351020 | 0.899177 | 2.565944e-77 | -8.615850e-47 |
| Msa0373350 | Msa1351020 | 0.826656 | 2.406876e-54 | -8.615850e-47 |
| Msa0376850 | Msa1351020 | 0.863577 | 2.254351e-64 | -8.615850e-47 |
| Msa0377370 | Msa1351020 | 0.849152 | 3.883533e-60 | -8.615850e-47 |
| Msa0377520 | Msa1351020 | 0.861431 | 1.031150e-63 | -8.615850e-47 |
| Msa0382670 | Msa1351020 | 0.833247 | 5.952081e-56 | -8.615850e-47 |
| Msa0388520 | Msa1351020 | 0.857655 | 1.407850e-62 | -8.615850e-47 |
| Msa0416470 | Msa1351020 | 0.819880 | 9.205698e-53 | -8.615850e-47 |
| Msa0419710 | Msa1351020 | 0.844694 | 6.451443e-59 | -8.615850e-47 |
| Msa0426090 | Msa1351020 | 0.886290 | 3.890042e-72 | -8.615850e-47 |
| Msa0426250 | Msa1351020 | 0.893713 | 4.863341e-75 | -8.615850e-47 |
| Msa0426940 | Msa1351020 | 0.823286 | 1.503463e-53 | -8.615850e-47 |
| Msa0433060 | Msa1351020 | 0.811071 | 8.408011e-51 | -8.615850e-47 |
| Msa0450150 | Msa1351020 | 0.881529 | 2.225037e-70 | -8.615850e-47 |
| Msa0468440 | Msa1351020 | 0.815321 | 9.816432e-52 | -8.615850e-47 |
| Msa0472480 | Msa1351020 | 0.880831 | 3.967749e-70 | -8.615850e-47 |
| Msa0481520 | Msa1351020 | 0.857152 | 1.982314e-62 | -8.615850e-47 |
| Msa0482560 | Msa1351020 | 0.810478 | 1.129855e-50 | -8.615850e-47 |
| Msa1019110 | Msa1351020 | 0.824019 | 1.012737e-53 | -8.615850e-47 |
| Msa1025200 | Msa1351020 | 0.824295 | 8.723375e-54 | -8.615850e-47 |
| Msa1025220 | Msa1351020 | 0.826213 | 3.068465e-54 | -8.615850e-47 |
| Msa1037290 | Msa1351020 | 0.826330 | 2.878791e-54 | -8.615850e-47 |
| Msa1040160 | Msa1351020 | 0.809058 | 2.283125e-50 | -8.615850e-47 |
| Msa1041680 | Msa1351020 | 0.832345 | 9.968576e-56 | -8.615850e-47 |
| Msa1047020 | Msa1351020 | 0.810812 | 9.569211e-51 | -8.615850e-47 |
| Msa1050100 | Msa1351020 | 0.823474 | 1.358262e-53 | -8.615850e-47 |
| Msa1068660 | Msa1351020 | 0.837525 | 4.937682e-57 | -8.615850e-47 |
| Msa1079910 | Msa1351020 | 0.825617 | 4.251765e-54 | -8.615850e-47 |
| Msa1082050 | Msa1351020 | 0.847388 | 1.193694e-59 | -8.615850e-47 |
| Msa1083370 | Msa1351020 | 0.801599 | 8.345099e-49 | -8.615850e-47 |
| Msa1085850 | Msa1351020 | 0.837261 | 5.771195e-57 | -8.615850e-47 |
| Msa1093500 | Msa1351020 | 0.848922 | 4.500698e-60 | -8.615850e-47 |
| Msa0239420 | Msa1351020 | 0.881936 | 1.585418e-70 | -8.615850e-47 |
| Msa0270160 | Msa1351020 | 0.857694 | 1.370837e-62 | -8.615850e-47 |
| Msa0274940 | Msa1351020 | 0.837936 | 3.873641e-57 | -8.615850e-47 |
| Msa0277600 | Msa1351020 | 0.929918 | 3.484275e-93 | -8.615850e-47 |
| Msa0281330 | Msa1351020 | 0.869941 | 2.122596e-66 | -8.615850e-47 |
| Msa0281370 | Msa1351020 | 0.892838 | 1.097185e-74 | -8.615850e-47 |
| Msa0301250 | Msa1351020 | 0.904086 | 1.771417e-79 | -8.615850e-47 |
| Msa0313060 | Msa1351020 | 0.919412 | 4.648042e-87 | -8.615850e-47 |
| Msa0315430 | Msa1351020 | 0.893531 | 5.766451e-75 | -8.615850e-47 |
| Msa0315660 | Msa1351020 | 0.838924 | 2.153263e-57 | -8.615850e-47 |
| Msa0340560 | Msa1351020 | 0.833292 | 5.798388e-56 | -8.615850e-47 |
| Msa1109310 | Msa1351020 | 0.803091 | 4.113531e-49 | -8.615850e-47 |
| Msa1116940 | Msa1351020 | 0.803626 | 3.187129e-49 | -8.615850e-47 |
| Msa1125900 | Msa1351020 | 0.803306 | 3.713292e-49 | -8.615850e-47 |
| Msa1126100 | Msa1351020 | 0.800900 | 1.160074e-48 | -8.615850e-47 |
| Msa1126690 | Msa1351020 | 0.885437 | 8.136015e-72 | -8.615850e-47 |
| Msa1130680 | Msa1351020 | 0.810137 | 1.338613e-50 | -8.615850e-47 |
| Msa1131030 | Msa1351020 | 0.817472 | 3.240044e-52 | -8.615850e-47 |
| Msa1144610 | Msa1351020 | 0.842327 | 2.766539e-58 | -8.615850e-47 |
| Msa1144630 | Msa1351020 | 0.805219 | 1.483858e-49 | -8.615850e-47 |
| Msa1156830 | Msa1351020 | 0.845245 | 4.578786e-59 | -8.615850e-47 |
| Msa1164150 | Msa1351020 | 0.862917 | 3.607972e-64 | -8.615850e-47 |
| Msa1165640 | Msa1351020 | 0.824098 | 9.702283e-54 | -8.615850e-47 |
| Msa1166570 | Msa1351020 | 0.828467 | 8.846300e-55 | -8.615850e-47 |
| Msa1166670 | Msa1351020 | 0.812196 | 4.787796e-51 | -8.615850e-47 |
| Msa1180000 | Msa1351020 | 0.834636 | 2.673104e-56 | -8.615850e-47 |
| Msa1186030 | Msa1351020 | 0.834036 | 3.779551e-56 | -8.615850e-47 |
| Msa1206240 | Msa1351020 | 0.807214 | 5.639489e-50 | -8.615850e-47 |
| Msa1208330 | Msa1351020 | 0.802200 | 6.280940e-49 | -8.615850e-47 |
| Msa0485220 | Msa1351020 | 0.804610 | 1.988567e-49 | -8.615850e-47 |
| Msa0511760 | Msa1351020 | 0.882819 | 7.565170e-71 | -8.615850e-47 |
| Msa0516830 | Msa1351020 | 0.863261 | 2.824802e-64 | -8.615850e-47 |
| Msa0517480 | Msa1351020 | 0.863418 | 2.524821e-64 | -8.615850e-47 |
| Msa0524680 | Msa1351020 | 0.810036 | 1.407224e-50 | -8.615850e-47 |
| Msa0529900 | Msa1351020 | 0.839478 | 1.546675e-57 | -8.615850e-47 |
| Msa0547920 | Msa1351020 | 0.912003 | 3.201314e-83 | -8.615850e-47 |
| Msa0550490 | Msa1351020 | 0.806083 | 9.773089e-50 | -8.615850e-47 |
| Msa0552510 | Msa1351020 | 0.810613 | 1.056596e-50 | -8.615850e-47 |
| Msa0573550 | Msa1351020 | 0.939799 | 6.913440e-100 | -8.615850e-47 |
| Msa0574780 | Msa1351020 | 0.912487 | 1.842128e-83 | -8.615850e-47 |
| Msa0578010 | Msa1351020 | 0.890105 | 1.330795e-73 | -8.615850e-47 |
| Msa0579830 | Msa1351020 | 0.856325 | 3.472573e-62 | -8.615850e-47 |
| Msa0582070 | Msa1351020 | 0.846744 | 1.791553e-59 | -8.615850e-47 |
| Msa0585570 | Msa1351020 | 0.856291 | 3.553242e-62 | -8.615850e-47 |
| Msa0597240 | Msa1351020 | 0.835652 | 1.481178e-56 | -8.615850e-47 |
| Msa0902730 | Msa1351020 | 0.862076 | 6.547766e-64 | -8.615850e-47 |
| Msa0929680 | Msa1351020 | 0.831666 | 1.467049e-55 | -8.615850e-47 |
| Msa0929700 | Msa1351020 | 0.923794 | 1.659116e-89 | -8.615850e-47 |
| Msa0930100 | Msa1351020 | 0.855184 | 7.480250e-62 | -8.615850e-47 |
| Msa0930360 | Msa1351020 | 0.848455 | 6.064685e-60 | -8.615850e-47 |
| Msa0930790 | Msa1351020 | 0.892266 | 1.859717e-74 | -8.615850e-47 |
| Msa0930890 | Msa1351020 | 0.879632 | 1.063080e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351020 | MtrunA17_Chr2g0286111 | 99.338 | 151 | 1 | 0 | 33 | 183 | 1 | 151 | 1.17e-107 | 304 |
| Msa1351020 | MtrunA17_Chr4g0052211 | 99.338 | 151 | 1 | 0 | 33 | 183 | 1 | 151 | 4.46e-107 | 303 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351020 | AT3G11510.1 | 89.855 | 138 | 14 | 0 | 35 | 172 | 2 | 139 | 1.57e-89 | 259 |
| Msa1351020 | AT3G52580.1 | 89.130 | 138 | 15 | 0 | 35 | 172 | 2 | 139 | 6.18e-89 | 257 |
| Msa1351020 | AT2G36160.1 | 88.406 | 138 | 16 | 0 | 35 | 172 | 2 | 139 | 4.39e-88 | 255 |
| Msa1351020 | ATCG00750.1 | 33.613 | 119 | 70 | 2 | 61 | 179 | 28 | 137 | 2.11e-11 | 59.3 |
Find 72 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCGAGATTTGAAGAAATT+AGG | 0.223530 | tig0012025:-2759 | Msa1351020:intergenic |
| CTTCGTGCCCTTGCTCGTTC+TGG | 0.240493 | tig0012025:+4302 | Msa1351020:CDS |
| AGCACCAGGGCCAGGTGTTT+TGG | 0.248968 | tig0012025:-4270 | Msa1351020:intergenic |
| ATTTGAAGAAATTAGGGTTT+TGG | 0.284679 | tig0012025:-2752 | Msa1351020:intergenic |
| GCTCGTTCTGGAATGAAAAT+TGG | 0.299156 | tig0012025:+4314 | Msa1351020:CDS |
| ACAAGAAATACTTTATGTTT+AGG | 0.301414 | tig0012025:-5465 | Msa1351020:intergenic |
| AATGTTACTGTCTCTTCCTT+TGG | 0.327634 | tig0012025:-2915 | Msa1351020:intergenic |
| CAAAATGCCACAATTCTGTT+TGG | 0.341435 | tig0012025:-5410 | Msa1351020:intergenic |
| TCCGAGATTTGAAGAAATTA+GGG | 0.346871 | tig0012025:-2758 | Msa1351020:intergenic |
| CCCTTCTACCACTCTTTCTA+CGG | 0.354483 | tig0012025:-5325 | Msa1351020:intergenic |
| AGAGAAATGGTGGCAGTGTT+TGG | 0.379820 | tig0012025:-2698 | Msa1351020:intergenic |
| AGAAGGCTTTAGATACCTTA+TGG | 0.383435 | tig0012025:+5350 | Msa1351020:exon |
| AGAGTGGTAGAAGGGGTAGA+AGG | 0.383998 | tig0012025:+5333 | Msa1351020:CDS |
| AACATTGGGTCCAGCTGTTA+AGG | 0.388167 | tig0012025:+2932 | Msa1351020:CDS |
| AGTAAACAATAAAGCTAATT+CGG | 0.392151 | tig0012025:-5538 | Msa1351020:intergenic |
| CGAAGAGCAGCTTGAGCACC+AGG | 0.399712 | tig0012025:-4284 | Msa1351020:intergenic |
| AGTCGTCAAAGAGAAAGGTT+AGG | 0.404664 | tig0012025:+2889 | Msa1351020:intron |
| TTGGATACTGATGCTGCTGC+TGG | 0.405674 | tig0012025:-2733 | Msa1351020:intergenic |
| TTTAGATACCTTATGGTGTA+TGG | 0.408955 | tig0012025:+5357 | Msa1351020:exon |
| TGAACACAAATCTAATAATC+TGG | 0.411738 | tig0012025:-5583 | Msa1351020:intergenic |
| TTCAGTGTTTGTCTGAGAAC+TGG | 0.418927 | tig0012025:+5560 | Msa1351020:three_prime_UTR |
| TGCCGCTATGCTTGCAGCAC+AGG | 0.424923 | tig0012025:+3937 | Msa1351020:CDS |
| TTTAGGTGGGATGAAAGTTA+AGG | 0.429174 | tig0012025:+3889 | Msa1351020:intron |
| GGAATGAAAATTGGTCGTAT+AGG | 0.435498 | tig0012025:+4323 | Msa1351020:CDS |
| GCAGCTTGAGCACCAGGGCC+AGG | 0.435589 | tig0012025:-4278 | Msa1351020:intergenic |
| CAGCATGTTACTGATTTATC+CGG | 0.442376 | tig0012025:+3106 | Msa1351020:intron |
| ACCCTAATTTCTTCAAATCT+CGG | 0.444756 | tig0012025:+2757 | Msa1351020:CDS |
| TGCTGCAAGCATAGCGGCAT+AGG | 0.460137 | tig0012025:-3933 | Msa1351020:intergenic |
| GTGATAGTCGTCAAAGAGAA+AGG | 0.460831 | tig0012025:+2884 | Msa1351020:intron |
| CACATTAAGCTCCGTGCCAC+TGG | 0.465038 | tig0012025:+4236 | Msa1351020:CDS |
| GAACCTTGTCAAAAGAGAAA+TGG | 0.470046 | tig0012025:-2711 | Msa1351020:intergenic |
| CCCGTAGAAAGAGTGGTAGA+AGG | 0.472164 | tig0012025:+5324 | Msa1351020:CDS |
| ACCTTATGGTGTATGGAAGC+TGG | 0.488683 | tig0012025:+5364 | Msa1351020:three_prime_UTR |
| GAAACCCTCGTCCGTATCAC+TGG | 0.498735 | tig0012025:+3133 | Msa1351020:CDS |
| TTTGGTCTTGTTTCCACCAG+TGG | 0.501009 | tig0012025:-4252 | Msa1351020:intergenic |
| TCCAGCTTCCATACACCATA+AGG | 0.503287 | tig0012025:-5365 | Msa1351020:intergenic |
| ACGGGTGCTATCGGAAGGAA+TGG | 0.504362 | tig0012025:-5306 | Msa1351020:intergenic |
| TGCCACAATTCTGTTTGGCA+TGG | 0.511987 | tig0012025:-5405 | Msa1351020:intergenic |
| TGTTCACCATCCTTAACAGC+TGG | 0.531081 | tig0012025:-2942 | Msa1351020:intergenic |
| ACTCTTTCTACGGGTGCTAT+CGG | 0.532615 | tig0012025:-5315 | Msa1351020:intergenic |
| CCGTAGAAAGAGTGGTAGAA+GGG | 0.533450 | tig0012025:+5325 | Msa1351020:CDS |
| AAAGGAAGAGACAGTAACAT+TGG | 0.536923 | tig0012025:+2917 | Msa1351020:CDS |
| CCTTCTACCACTCTTTCTAC+GGG | 0.539502 | tig0012025:-5324 | Msa1351020:intergenic |
| CATATATATACTAACAATGA+AGG | 0.543037 | tig0012025:-3006 | Msa1351020:intergenic |
| ATGTTACTGATTTATCCGGC+AGG | 0.543996 | tig0012025:+3110 | Msa1351020:CDS |
| ACGGACGAGGGTTTCCCTGC+CGG | 0.547105 | tig0012025:-3125 | Msa1351020:intergenic |
| GTCGTCAAAGAGAAAGGTTA+GGG | 0.549356 | tig0012025:+2890 | Msa1351020:intron |
| AAGACCAAAACACCTGGCCC+TGG | 0.552706 | tig0012025:+4266 | Msa1351020:CDS |
| AAGGAAGAGACAGTAACATT+GGG | 0.554128 | tig0012025:+2918 | Msa1351020:CDS |
| TCTTGTTTCCACCAGTGGCA+CGG | 0.555351 | tig0012025:-4247 | Msa1351020:intergenic |
| GAGAAAGGTTAGGGAGCCAA+AGG | 0.560093 | tig0012025:+2899 | Msa1351020:CDS |
| ACTCATACATACCAGTGATA+CGG | 0.570439 | tig0012025:-3144 | Msa1351020:intergenic |
| ATTAAGCTCCGTGCCACTGG+TGG | 0.571382 | tig0012025:+4239 | Msa1351020:CDS |
| GCTGCAAGCATAGCGGCATA+GGG | 0.578463 | tig0012025:-3932 | Msa1351020:intergenic |
| TTTCATTCCAGAACGAGCAA+GGG | 0.582609 | tig0012025:-4309 | Msa1351020:intergenic |
| TTCCATGCCAAACAGAATTG+TGG | 0.582827 | tig0012025:+5403 | Msa1351020:three_prime_UTR |
| ACATACCAGTGATACGGACG+AGG | 0.584850 | tig0012025:-3138 | Msa1351020:intergenic |
| CGGGTGCTATCGGAAGGAAT+GGG | 0.585535 | tig0012025:-5305 | Msa1351020:intergenic |
| GGAAACAAGACCAAAACACC+TGG | 0.596535 | tig0012025:+4260 | Msa1351020:CDS |
| TTTCTACGGGTGCTATCGGA+AGG | 0.607952 | tig0012025:-5311 | Msa1351020:intergenic |
| AGATACCATGGTTGAAAATG+CGG | 0.612440 | tig0012025:-2782 | Msa1351020:intergenic |
| CCTTGTCAAAAGAGAAATGG+TGG | 0.615510 | tig0012025:-2708 | Msa1351020:intergenic |
| TGTTACTGATTTATCCGGCA+GGG | 0.618792 | tig0012025:+3111 | Msa1351020:CDS |
| TTGGGTCCAGCTGTTAAGGA+TGG | 0.623308 | tig0012025:+2936 | Msa1351020:CDS |
| CGTAGAAAGAGTGGTAGAAG+GGG | 0.630512 | tig0012025:+5326 | Msa1351020:CDS |
| GATAGCACCCGTAGAAAGAG+TGG | 0.631829 | tig0012025:+5317 | Msa1351020:CDS |
| GGATGTTGCTACTAGATGCA+AGG | 0.645225 | tig0012025:+3958 | Msa1351020:CDS |
| TTTAGGTGTTGAATCAAACA+TGG | 0.646359 | tig0012025:-5448 | Msa1351010:intergenic |
| ACGGAGCTTAATGTGAAGTG+CGG | 0.698863 | tig0012025:-4228 | Msa1351010:intergenic |
| ATCCTGTGCTGCAAGCATAG+CGG | 0.706099 | tig0012025:-3939 | Msa1351010:intergenic |
| GAAGAGCAGCTTGAGCACCA+GGG | 0.706692 | tig0012025:-4283 | Msa1351010:intergenic |
| CATACCAGTGATACGGACGA+GGG | 0.727503 | tig0012025:-3137 | Msa1351010:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAAAAAATTACATATTTA+AGG | + | tig0012025:3244-3263 | Msa1351020:intron | 10.0% |
| !!! | TTATAAGTTTTTAATTTAGA+TGG | + | tig0012025:3746-3765 | Msa1351020:intron | 10.0% |
| !!! | AGCATTATTTTTTTTTTATA+TGG | + | tig0012025:4147-4166 | Msa1351020:intron | 10.0% |
| !!! | GCATTATTTTTTTTTTATAT+GGG | + | tig0012025:4148-4167 | Msa1351020:intron | 10.0% |
| !!! | CATTATTTTTTTTTTATATG+GGG | + | tig0012025:4149-4168 | Msa1351020:intron | 10.0% |
| !!! | TTAGTTACTATCATATTTTA+AGG | + | tig0012025:3212-3231 | Msa1351020:intron | 15.0% |
| !! | TTTGAAAAACCTTAAAAATT+TGG | + | tig0012025:3277-3296 | Msa1351020:intron | 15.0% |
| !!! | TACAAATAACCAAATTTTTA+AGG | - | tig0012025:3289-3308 | Msa1351020:intergenic | 15.0% |
| !! | ATTTGATAAGTTAATTTAGA+TGG | + | tig0012025:3690-3709 | Msa1351020:intron | 15.0% |
| !!! | TTGTTTTTTTTCCAAATTTT+AGG | + | tig0012025:3872-3891 | Msa1351020:intron | 15.0% |
| !! | CATATATATACTAACAATGA+AGG | - | tig0012025:3009-3028 | Msa1351020:intergenic | 20.0% |
| !!! | GAATTTTTTTTAAAATACCC+TGG | - | tig0012025:3461-3480 | Msa1351020:intergenic | 20.0% |
| !! | ATTGAAAAATAATTATTCCC+GGG | - | tig0012025:3607-3626 | Msa1351020:intergenic | 20.0% |
| !! | GATTGAAAAATAATTATTCC+CGG | - | tig0012025:3608-3627 | Msa1351020:intergenic | 20.0% |
| !!! | TTTTTTTTCCAAATTTTAGG+TGG | + | tig0012025:3875-3894 | Msa1351020:intron | 20.0% |
| !!! | TTTTTTTCCAAATTTTAGGT+GGG | + | tig0012025:3876-3895 | Msa1351020:intron | 20.0% |
| !!! | TGAATGTTTTTGTTTTGTTT+TGG | + | tig0012025:4108-4127 | Msa1351020:intron | 20.0% |
| !!! | TGTACTGATTCAAAATATTT+TGG | + | tig0012025:4187-4206 | Msa1351020:intron | 20.0% |
| !! | GATAATTGTATTTAATCTGA+TGG | - | tig0012025:4481-4500 | Msa1351020:intergenic | 20.0% |
| !!! | TTCAAGTTATTTGAGTTATT+TGG | + | tig0012025:4554-4573 | Msa1351020:intron | 20.0% |
| !! | TATTGTATAGAATAACTGTA+AGG | + | tig0012025:4609-4628 | Msa1351020:intron | 20.0% |
| !! | AATATTCACTATAGTACATA+TGG | + | tig0012025:4692-4711 | Msa1351020:intron | 20.0% |
| !!! | TGCTCTTATTTTAAGTTATT+TGG | + | tig0012025:4723-4742 | Msa1351020:intron | 20.0% |
| !! | ACAAGAAATACTTTATGTTT+AGG | - | tig0012025:5468-5487 | Msa1351020:intergenic | 20.0% |
| !! | AGTAAACAATAAAGCTAATT+CGG | - | tig0012025:5541-5560 | Msa1351020:intergenic | 20.0% |
| !! | ATTTGAAGAAATTAGGGTTT+TGG | - | tig0012025:2755-2774 | Msa1351020:intergenic | 25.0% |
| ! | TAACTCTCTATAATTGTTCT+TGG | - | tig0012025:3317-3336 | Msa1351020:intergenic | 25.0% |
| !! | TGTTAGGATTTTTATCTTTG+TGG | + | tig0012025:3365-3384 | Msa1351020:intron | 25.0% |
| !! | AAATAAATTCCAGTTTTCCT+AGG | - | tig0012025:3505-3524 | Msa1351020:intergenic | 25.0% |
| ! | ACAAAATTTAATGGGAATGT+TGG | + | tig0012025:3542-3561 | Msa1351020:intron | 25.0% |
| ! | CAAAATTTAATGGGAATGTT+GGG | + | tig0012025:3543-3562 | Msa1351020:intron | 25.0% |
| ! | TTTCAATCCTGTAACAAATA+TGG | + | tig0012025:3620-3639 | Msa1351020:intron | 25.0% |
| ! | TTCAATCCTGTAACAAATAT+GGG | + | tig0012025:3621-3640 | Msa1351020:intron | 25.0% |
| !!! | GAATTGCATGTTTTAATTAC+TGG | + | tig0012025:3825-3844 | Msa1351020:intron | 25.0% |
| ! | ATATTTACGATGTGAAAGTT+AGG | + | tig0012025:4417-4436 | Msa1351020:intron | 25.0% |
| ! | GCGTATTGTATAGAATTATT+TGG | + | tig0012025:4580-4599 | Msa1351020:intron | 25.0% |
| ! | AGTTATAGTTAAGAGAAACA+TGG | + | tig0012025:4664-4683 | Msa1351020:intron | 25.0% |
| ! | TAATAGGTAAAAGAGAATCA+GGG | + | tig0012025:4820-4839 | Msa1351020:intron | 25.0% |
| ! | AATTGAAAAAATTCCTAGTC+TGG | - | tig0012025:5128-5147 | Msa1351020:intergenic | 25.0% |
| ! | GAATAATTAATTTCACTGAG+AGG | - | tig0012025:5196-5215 | Msa1351020:intergenic | 25.0% |
| ! | TGAACACAAATCTAATAATC+TGG | - | tig0012025:5586-5605 | Msa1351020:intergenic | 25.0% |
| ACCCTAATTTCTTCAAATCT+CGG | + | tig0012025:2757-2776 | Msa1351020:CDS | 30.0% | |
| TCCGAGATTTGAAGAAATTA+GGG | - | tig0012025:2761-2780 | Msa1351020:intergenic | 30.0% | |
| TTCCGAGATTTGAAGAAATT+AGG | - | tig0012025:2762-2781 | Msa1351020:intergenic | 30.0% | |
| AGCATGATTATTCTATACTC+TGG | + | tig0012025:3338-3357 | Msa1351020:intron | 30.0% | |
| ! | AACTGACTCAAATTATTCCT+AGG | + | tig0012025:3397-3416 | Msa1351020:intron | 30.0% |
| TTGAATATTCCTAGGAAAAC+TGG | + | tig0012025:3493-3512 | Msa1351020:intron | 30.0% | |
| ATAATTATTCCCGGGTATAA+AGG | - | tig0012025:3599-3618 | Msa1351020:intergenic | 30.0% | |
| ! | AGTATACCCATATTTGTTAC+AGG | - | tig0012025:3630-3649 | Msa1351020:intergenic | 30.0% |
| ! | GTTTTTGTCAAAACACTCTT+AGG | - | tig0012025:3658-3677 | Msa1351020:intergenic | 30.0% |
| ! | ATGTTGCTGTTGATATTGTT+TGG | + | tig0012025:3798-3817 | Msa1351020:intron | 30.0% |
| !!! | CATGTTTTAATTACTGGATG+TGG | + | tig0012025:3831-3850 | Msa1351020:intron | 30.0% |
| ! | TCAAACCAAAATGCGTTTTT+GGG | + | tig0012025:4033-4052 | Msa1351020:intron | 30.0% |
| ACTGTGTTTACACTGTTAAA+TGG | + | tig0012025:4066-4085 | Msa1351020:intron | 30.0% | |
| !!! | GATTCAAAATATTTTGGAGC+AGG | + | tig0012025:4193-4212 | Msa1351020:intron | 30.0% |
| AACCTTAAACTATCTTCTGT+GGG | - | tig0012025:4384-4403 | Msa1351020:intergenic | 30.0% | |
| AAACCTTAAACTATCTTCTG+TGG | - | tig0012025:4385-4404 | Msa1351020:intergenic | 30.0% | |
| TAAGTATATTCTCTCTCTTC+TGG | - | tig0012025:4533-4552 | Msa1351020:intergenic | 30.0% | |
| TTTCTCTTAACTATAACTGC+TGG | - | tig0012025:4662-4681 | Msa1351020:intergenic | 30.0% | |
| ATCTGTACTGTATTGAACAA+CGG | + | tig0012025:4747-4766 | Msa1351020:intron | 30.0% | |
| GTAATAGGTAAAAGAGAATC+AGG | + | tig0012025:4819-4838 | Msa1351020:intron | 30.0% | |
| !! | TTTTTATGTTGCTATTGCAG+AGG | + | tig0012025:5274-5293 | Msa1351020:intron | 30.0% |
| TTTAGATACCTTATGGTGTA+TGG | + | tig0012025:5357-5376 | Msa1351020:exon | 30.0% | |
| !! | TTTAGGTGTTGAATCAAACA+TGG | - | tig0012025:5451-5470 | Msa1351020:intergenic | 30.0% |
| GAACCTTGTCAAAAGAGAAA+TGG | - | tig0012025:2714-2733 | Msa1351020:intergenic | 35.0% | |
| AGATACCATGGTTGAAAATG+CGG | - | tig0012025:2785-2804 | Msa1351020:intergenic | 35.0% | |
| ATGTACGTATGAAGATACCA+TGG | - | tig0012025:2797-2816 | Msa1351020:intergenic | 35.0% | |
| AATGTTACTGTCTCTTCCTT+TGG | - | tig0012025:2918-2937 | Msa1351020:intergenic | 35.0% | |
| AAAGGAAGAGACAGTAACAT+TGG | + | tig0012025:2917-2936 | Msa1351020:CDS | 35.0% | |
| AAGGAAGAGACAGTAACATT+GGG | + | tig0012025:2918-2937 | Msa1351020:CDS | 35.0% | |
| ! | AAGGATGGTGAACATGTTTT+CGG | + | tig0012025:2951-2970 | Msa1351020:CDS | 35.0% |
| !! | CAGCATGTTACTGATTTATC+CGG | + | tig0012025:3106-3125 | Msa1351020:intron | 35.0% |
| ACTCATACATACCAGTGATA+CGG | - | tig0012025:3147-3166 | Msa1351020:intergenic | 35.0% | |
| ! | TCTATACTCTGGTTTGTGTT+AGG | + | tig0012025:3349-3368 | Msa1351020:intron | 35.0% |
| TTCTAGTGTATGTTGTTCCT+AGG | - | tig0012025:3417-3436 | Msa1351020:intergenic | 35.0% | |
| AAAGACAGTAGTTTGAATCC+AGG | + | tig0012025:3440-3459 | Msa1351020:intron | 35.0% | |
| AAGACAGTAGTTTGAATCCA+GGG | + | tig0012025:3441-3460 | Msa1351020:intron | 35.0% | |
| TTCACAAGAACCTTTATACC+CGG | + | tig0012025:3586-3605 | Msa1351020:intron | 35.0% | |
| CAGCAACATGAATGTATCTT+AGG | - | tig0012025:3787-3806 | Msa1351020:intergenic | 35.0% | |
| GCTGTTGATATTGTTTGGTT+TGG | + | tig0012025:3803-3822 | Msa1351020:intron | 35.0% | |
| CTTTCATCCCACCTAAAATT+TGG | - | tig0012025:3886-3905 | Msa1351020:intergenic | 35.0% | |
| TTTAGGTGGGATGAAAGTTA+AGG | + | tig0012025:3889-3908 | Msa1351020:intron | 35.0% | |
| ! | GTCAAACCAAAATGCGTTTT+TGG | + | tig0012025:4032-4051 | Msa1351020:intron | 35.0% |
| ! | TTTCACCCAAAAACGCATTT+TGG | - | tig0012025:4041-4060 | Msa1351020:intergenic | 35.0% |
| GGAATGAAAATTGGTCGTAT+AGG | + | tig0012025:4323-4342 | Msa1351020:CDS | 35.0% | |
| AACCCACAGAAGATAGTTTA+AGG | + | tig0012025:4379-4398 | Msa1351020:intron | 35.0% | |
| TCTCTCTTCTGGTAAAATAG+AGG | - | tig0012025:4522-4541 | Msa1351020:intergenic | 35.0% | |
| ! | TCAACGGTGAACCTTATTTA+CGG | - | tig0012025:4781-4800 | Msa1351020:intergenic | 35.0% |
| TATCGTACTCAGTTCATCAA+CGG | - | tig0012025:4797-4816 | Msa1351020:intergenic | 35.0% | |
| TTGATGAACTGAGTACGATA+TGG | + | tig0012025:4797-4816 | Msa1351020:intron | 35.0% | |
| ACTGAGTACGATATGGTAAT+AGG | + | tig0012025:4804-4823 | Msa1351020:intron | 35.0% | |
| AAAGAGAATCAGGGATATCT+AGG | + | tig0012025:4829-4848 | Msa1351020:intron | 35.0% | |
| CTAGGAAAATATGTTGCACA+AGG | + | tig0012025:4847-4866 | Msa1351020:intron | 35.0% | |
| CCAGAAAATCCAAATGTCTT+GGG | - | tig0012025:4936-4955 | Msa1351020:intergenic | 35.0% | |
| ACCAGAAAATCCAAATGTCT+TGG | - | tig0012025:4937-4956 | Msa1351020:intergenic | 35.0% | |
| ! | AAGACATTTGGATTTTCTGG+TGG | + | tig0012025:4936-4955 | Msa1351020:intron | 35.0% |
| !! | TTTCGTGGATTAGACTGAAA+CGG | - | tig0012025:5091-5110 | Msa1351020:intergenic | 35.0% |
| TTTCAGTCTAATCCACGAAA+GGG | + | tig0012025:5091-5110 | Msa1351020:intron | 35.0% | |
| ATTTCACTGAGAGGAAGATA+AGG | - | tig0012025:5187-5206 | Msa1351020:intergenic | 35.0% | |
| !! | AGAAGGCTTTAGATACCTTA+TGG | + | tig0012025:5350-5369 | Msa1351020:exon | 35.0% |
| CAAAATGCCACAATTCTGTT+TGG | - | tig0012025:5413-5432 | Msa1351020:intergenic | 35.0% | |
| CCTTGTCAAAAGAGAAATGG+TGG | - | tig0012025:2711-2730 | Msa0443400:intergenic | 40.0% | |
| ! | CCACCATTTCTCTTTTGACA+AGG | + | tig0012025:2708-2727 | Msa1351020:CDS | 40.0% |
| GTGATAGTCGTCAAAGAGAA+AGG | + | tig0012025:2884-2903 | Msa1351020:intron | 40.0% | |
| AGTCGTCAAAGAGAAAGGTT+AGG | + | tig0012025:2889-2908 | Msa1351020:intron | 40.0% | |
| GTCGTCAAAGAGAAAGGTTA+GGG | + | tig0012025:2890-2909 | Msa1351020:intron | 40.0% | |
| !! | ATGTTACTGATTTATCCGGC+AGG | + | tig0012025:3110-3129 | Msa1351020:CDS | 40.0% |
| !! | TGTTACTGATTTATCCGGCA+GGG | + | tig0012025:3111-3130 | Msa1351020:CDS | 40.0% |
| CCTAGGAATATTCAAGAGTG+TGG | - | tig0012025:3488-3507 | Msa1351020:intergenic | 40.0% | |
| CCACACTCTTGAATATTCCT+AGG | + | tig0012025:3485-3504 | Msa1351020:intron | 40.0% | |
| TCACAAGAACCTTTATACCC+GGG | + | tig0012025:3587-3606 | Msa1351020:intron | 40.0% | |
| !!! | AATATTTTGGAGCAGGAGCT+CGG | + | tig0012025:4200-4219 | Msa1351020:intron | 40.0% |
| TTTCATTCCAGAACGAGCAA+GGG | - | tig0012025:4312-4331 | Msa1351020:intergenic | 40.0% | |
| ! | TTTTCATTCCAGAACGAGCA+AGG | - | tig0012025:4313-4332 | Msa1351020:intergenic | 40.0% |
| !! | GCTCGTTCTGGAATGAAAAT+TGG | + | tig0012025:4314-4333 | Msa1351020:CDS | 40.0% |
| CATCGTAAATATCAGAGAGC+AGG | - | tig0012025:4409-4428 | Msa1351020:intergenic | 40.0% | |
| GGATAGACACTTCATCTCTA+TGG | - | tig0012025:4908-4927 | Msa1351020:intergenic | 40.0% | |
| ATCCTTAGTCCCAAGACATT+TGG | + | tig0012025:4924-4943 | Msa1351020:intron | 40.0% | |
| ATCCAAATGTCTTGGGACTA+AGG | - | tig0012025:4929-4948 | Msa1351020:intergenic | 40.0% | |
| ! | CCCAAGACATTTGGATTTTC+TGG | + | tig0012025:4933-4952 | Msa1351020:intron | 40.0% |
| !! | ACATTTGGATTTTCTGGTGG+TGG | + | tig0012025:4939-4958 | Msa1351020:intron | 40.0% |
| ! | TCTACCACGTGAGTTCTTTT+TGG | - | tig0012025:5004-5023 | Msa1351020:intergenic | 40.0% |
| ATTTAGCAAGCAAACAGGGA+AGG | - | tig0012025:5058-5077 | Msa1351020:intergenic | 40.0% | |
| CAGGATTTAGCAAGCAAACA+GGG | - | tig0012025:5062-5081 | Msa1351020:intergenic | 40.0% | |
| ACAGGATTTAGCAAGCAAAC+AGG | - | tig0012025:5063-5082 | Msa1351020:intergenic | 40.0% | |
| TAGACTGAAACGGTGATTAC+AGG | - | tig0012025:5081-5100 | Msa1351020:intergenic | 40.0% | |
| GTTTCAGTCTAATCCACGAA+AGG | + | tig0012025:5090-5109 | Msa1351020:intron | 40.0% | |
| TTCCATGCCAAACAGAATTG+TGG | + | tig0012025:5403-5422 | Msa1351020:three_prime_UTR | 40.0% | |
| TTCAGTGTTTGTCTGAGAAC+TGG | + | tig0012025:5560-5579 | Msa1351020:three_prime_UTR | 40.0% | |
| !! | TGTGTTCAGCTTCGAGTTTT+TGG | + | tig0012025:5598-5617 | Msa1351020:three_prime_UTR | 40.0% |
| AACATTGGGTCCAGCTGTTA+AGG | + | tig0012025:2932-2951 | Msa1351020:CDS | 45.0% | |
| TGTTCACCATCCTTAACAGC+TGG | - | tig0012025:2945-2964 | Msa1351020:intergenic | 45.0% | |
| GGATGTTGCTACTAGATGCA+AGG | + | tig0012025:3958-3977 | Msa1351020:CDS | 45.0% | |
| GTTGCTACTAGATGCAAGGT+CGG | + | tig0012025:3962-3981 | Msa1351020:intron | 45.0% | |
| ACGGAGCTTAATGTGAAGTG+CGG | - | tig0012025:4231-4250 | Msa1351020:intergenic | 45.0% | |
| !! | TTTGGTCTTGTTTCCACCAG+TGG | - | tig0012025:4255-4274 | Msa1351020:intergenic | 45.0% |
| GGAAACAAGACCAAAACACC+TGG | + | tig0012025:4260-4279 | Msa1351020:CDS | 45.0% | |
| CGGTCGAATTGCCGTAAATA+AGG | + | tig0012025:4767-4786 | Msa1351020:intron | 45.0% | |
| ! | CACGTGAGTTCTTTTTGGAC+TGG | - | tig0012025:4999-5018 | Msa1351020:intergenic | 45.0% |
| CAGTCCAAAAAGAACTCACG+TGG | + | tig0012025:4997-5016 | Msa1351020:intron | 45.0% | |
| GAAATGTGACAACCCTTTCG+TGG | - | tig0012025:5106-5125 | Msa1351020:intergenic | 45.0% | |
| GGTTGTCACATTTCCAGACT+AGG | + | tig0012025:5112-5131 | Msa1351020:intron | 45.0% | |
| CTGAGAGGAAGATAAGGTCA+GGG | - | tig0012025:5181-5200 | Msa1351020:intergenic | 45.0% | |
| ACTGAGAGGAAGATAAGGTC+AGG | - | tig0012025:5182-5201 | Msa1351020:intergenic | 45.0% | |
| ! | ACTCTTTCTACGGGTGCTAT+CGG | - | tig0012025:5318-5337 | Msa1351020:intergenic | 45.0% |
| CCTTCTACCACTCTTTCTAC+GGG | - | tig0012025:5327-5346 | Msa1351020:intergenic | 45.0% | |
| CCCTTCTACCACTCTTTCTA+CGG | - | tig0012025:5328-5347 | Msa1351020:intergenic | 45.0% | |
| CCGTAGAAAGAGTGGTAGAA+GGG | + | tig0012025:5325-5344 | Msa1351020:CDS | 45.0% | |
| CGTAGAAAGAGTGGTAGAAG+GGG | + | tig0012025:5326-5345 | Msa1351020:CDS | 45.0% | |
| ACCTTATGGTGTATGGAAGC+TGG | + | tig0012025:5364-5383 | Msa1351020:three_prime_UTR | 45.0% | |
| TCCAGCTTCCATACACCATA+AGG | - | tig0012025:5368-5387 | Msa1351020:intergenic | 45.0% | |
| TGCCACAATTCTGTTTGGCA+TGG | - | tig0012025:5408-5427 | Msa1351020:intergenic | 45.0% | |
| !! | TAAAATTATACAAAATTTAA+TGG | + | tig0012025:3533-3552 | Msa1351020:intron | 5.0% |
| !! | AAAATTATACAAAATTTAAT+GGG | + | tig0012025:3534-3553 | Msa1351020:intron | 5.0% |
| TTGGATACTGATGCTGCTGC+TGG | - | tig0012025:2736-2755 | Msa1351020:intergenic | 50.0% | |
| ! | CGGAACCGCATTTTCAACCA+TGG | + | tig0012025:2777-2796 | Msa1351020:CDS | 50.0% |
| GAGAAAGGTTAGGGAGCCAA+AGG | + | tig0012025:2899-2918 | Msa1351020:CDS | 50.0% | |
| TTGGGTCCAGCTGTTAAGGA+TGG | + | tig0012025:2936-2955 | Msa1351020:CDS | 50.0% | |
| CATACCAGTGATACGGACGA+GGG | - | tig0012025:3140-3159 | Msa1351020:intergenic | 50.0% | |
| ACATACCAGTGATACGGACG+AGG | - | tig0012025:3141-3160 | Msa1351020:intergenic | 50.0% | |
| ATCCTGTGCTGCAAGCATAG+CGG | - | tig0012025:3942-3961 | Msa1351020:intergenic | 50.0% | |
| ! | TCTTGTTTCCACCAGTGGCA+CGG | - | tig0012025:4250-4269 | Msa1351020:intergenic | 50.0% |
| !! | TTTCTGGTGGTGGTTGCTGT+AGG | + | tig0012025:4949-4968 | Msa1351020:intron | 50.0% |
| ! | TTTCTACGGGTGCTATCGGA+AGG | - | tig0012025:5314-5333 | Msa1351020:intergenic | 50.0% |
| GATAGCACCCGTAGAAAGAG+TGG | + | tig0012025:5317-5336 | Msa1351020:CDS | 50.0% | |
| CCCGTAGAAAGAGTGGTAGA+AGG | + | tig0012025:5324-5343 | Msa1351020:CDS | 50.0% | |
| AGAGTGGTAGAAGGGGTAGA+AGG | + | tig0012025:5333-5352 | Msa1351020:CDS | 50.0% | |
| GAAACCCTCGTCCGTATCAC+TGG | + | tig0012025:3133-3152 | Msa1351020:CDS | 55.0% | |
| GCTGCAAGCATAGCGGCATA+GGG | - | tig0012025:3935-3954 | Msa1351020:intergenic | 55.0% | |
| TGCTGCAAGCATAGCGGCAT+AGG | - | tig0012025:3936-3955 | Msa1351020:intergenic | 55.0% | |
| GCTACTAGATGCAAGGTCGG+TGG | + | tig0012025:3965-3984 | Msa1351020:intron | 55.0% | |
| CACATTAAGCTCCGTGCCAC+TGG | + | tig0012025:4236-4255 | Msa1351020:CDS | 55.0% | |
| ! | ATTAAGCTCCGTGCCACTGG+TGG | + | tig0012025:4239-4258 | Msa1351020:CDS | 55.0% |
| AAGACCAAAACACCTGGCCC+TGG | + | tig0012025:4266-4285 | Msa1351020:CDS | 55.0% | |
| GAAGAGCAGCTTGAGCACCA+GGG | - | tig0012025:4286-4305 | Msa1351020:intergenic | 55.0% | |
| ! | CGGGTGCTATCGGAAGGAAT+GGG | - | tig0012025:5308-5327 | Msa1351020:intergenic | 55.0% |
| ! | ACGGGTGCTATCGGAAGGAA+TGG | - | tig0012025:5309-5328 | Msa1351020:intergenic | 55.0% |
| TGCCGCTATGCTTGCAGCAC+AGG | + | tig0012025:3937-3956 | Msa1351020:CDS | 60.0% | |
| ! | AGCACCAGGGCCAGGTGTTT+TGG | - | tig0012025:4273-4292 | Msa1351020:intergenic | 60.0% |
| CGAAGAGCAGCTTGAGCACC+AGG | - | tig0012025:4287-4306 | Msa1351020:intergenic | 60.0% | |
| CTTCGTGCCCTTGCTCGTTC+TGG | + | tig0012025:4302-4321 | Msa1351020:CDS | 60.0% | |
| ACGGACGAGGGTTTCCCTGC+CGG | - | tig0012025:3128-3147 | Msa1351020:intergenic | 65.0% | |
| GCAGCTTGAGCACCAGGGCC+AGG | - | tig0012025:4281-4300 | Msa1351020:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0012025 | gene | 2700 | 5685 | 2700 | ID=Msa1351020;Name=Msa1351020 |
| tig0012025 | mRNA | 2700 | 5685 | 2700 | ID=Msa1351020-mRNA-1;Parent=Msa1351020;Name=Msa1351020-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|1|1|1|1|6|324|183 |
| tig0012025 | exon | 2700 | 2798 | 2700 | ID=Msa1351020-mRNA-1:exon:7618;Parent=Msa1351020-mRNA-1 |
| tig0012025 | exon | 2891 | 3013 | 2891 | ID=Msa1351020-mRNA-1:exon:7619;Parent=Msa1351020-mRNA-1 |
| tig0012025 | exon | 3109 | 3154 | 3109 | ID=Msa1351020-mRNA-1:exon:7620;Parent=Msa1351020-mRNA-1 |
| tig0012025 | exon | 3894 | 3979 | 3894 | ID=Msa1351020-mRNA-1:exon:7621;Parent=Msa1351020-mRNA-1 |
| tig0012025 | exon | 4215 | 4344 | 4215 | ID=Msa1351020-mRNA-1:exon:7622;Parent=Msa1351020-mRNA-1 |
| tig0012025 | exon | 5294 | 5685 | 5294 | ID=Msa1351020-mRNA-1:exon:7623;Parent=Msa1351020-mRNA-1 |
| tig0012025 | CDS | 2700 | 2798 | 2700 | ID=Msa1351020-mRNA-1:cds;Parent=Msa1351020-mRNA-1 |
| tig0012025 | CDS | 2891 | 3013 | 2891 | ID=Msa1351020-mRNA-1:cds;Parent=Msa1351020-mRNA-1 |
| tig0012025 | CDS | 3109 | 3154 | 3109 | ID=Msa1351020-mRNA-1:cds;Parent=Msa1351020-mRNA-1 |
| tig0012025 | CDS | 3894 | 3979 | 3894 | ID=Msa1351020-mRNA-1:cds;Parent=Msa1351020-mRNA-1 |
| tig0012025 | CDS | 4215 | 4344 | 4215 | ID=Msa1351020-mRNA-1:cds;Parent=Msa1351020-mRNA-1 |
| tig0012025 | CDS | 5294 | 5361 | 5294 | ID=Msa1351020-mRNA-1:cds;Parent=Msa1351020-mRNA-1 |
| tig0012025 | three_prime_UTR | 5362 | 5685 | 5362 | ID=Msa1351020-mRNA-1:three_prime_utr;Parent=Msa1351020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
