AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0909710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0909710 MtrunA17_Chr1g0212371 88.338 343 23 4 1 333 1 336 0.0 551
Msa0909710 MtrunA17_Chr8g0378941 37.500 184 98 6 132 312 172 341 2.27e-32 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0909710 AT2G31840.1 71.915 235 64 1 93 325 109 343 1.78e-115 338
Msa0909710 AT2G31840.2 71.915 235 64 1 93 325 109 343 1.78e-115 338
Msa0909710 AT4G28590.1 39.106 179 92 6 139 314 158 322 8.13e-35 130

Find 101 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAATCTTCATTTACAAAT+TGG 0.236557 6_2:+12761674 Msa0909710:three_prime_UTR
TTTCTCAAACCCCACTTTAC+AGG 0.236764 6_2:+12758361 Msa0909710:CDS
GCAGCCTTCATGTCTTTAAT+AGG 0.271223 6_2:-12758842 None:intergenic
GTCTACAACCTCTTGAATAT+CGG 0.302496 6_2:-12758585 None:intergenic
TCAGCATCTTGAGGCCAATT+AGG 0.323877 6_2:-12758677 None:intergenic
GCCTCAAGATGCTGATGGTT+GGG 0.347115 6_2:+12758685 Msa0909710:CDS
GAAGTTATCTTTACTAAAGC+AGG 0.362361 6_2:+12761152 Msa0909710:CDS
TGATTGAACTCTTGTTAGTT+TGG 0.367683 6_2:-12758393 None:intergenic
TTGTCCACAATCGTTATAGA+AGG 0.369198 6_2:+12758912 Msa0909710:CDS
TCACTCAAATCTGATGGTTC+TGG 0.371232 6_2:+12758413 Msa0909710:CDS
GACTAACATTCCAGATTTCC+AGG 0.377669 6_2:+12761379 Msa0909710:CDS
ATCATATTGTATGCAGTCAA+TGG 0.378354 6_2:-12761545 None:intergenic
CACAATGACAAAATGCTAGA+TGG 0.382096 6_2:-12761492 None:intergenic
GCTTTAGTAAAGATAACTTC+TGG 0.387977 6_2:-12761149 None:intergenic
ATGGAAATACTTCAGCGATA+TGG 0.392411 6_2:-12761473 None:intergenic
GTTGTAAAGAGAAAATGAAT+TGG 0.401953 6_2:-12758315 None:intergenic
TCACCTTAGGCTTGGCTTGG+TGG 0.403474 6_2:+12761625 Msa0909710:three_prime_UTR
TTGTAAAGAGAAAATGAATT+GGG 0.405487 6_2:-12758314 None:intergenic
CACCTTAGGCTTGGCTTGGT+GGG 0.414387 6_2:+12761626 Msa0909710:three_prime_UTR
TTTACAACAAACTCTTCAAC+CGG 0.424293 6_2:+12758330 Msa0909710:CDS
ATTAAAGATAGCAATATTCA+AGG 0.430847 6_2:-12761915 None:intergenic
GGCTGCCTAGTGTTCTCTGC+TGG 0.433044 6_2:-12758227 None:intergenic
GTTAGTCAAACACGATGGTT+TGG 0.445608 6_2:-12761363 None:intergenic
TCTACAACCTCTTGAATATC+GGG 0.446395 6_2:-12758584 None:intergenic
TGGAAGAGGAGGATCCTAAT+TGG 0.447524 6_2:+12758663 Msa0909710:CDS
TAGGCAGCCTCCTCCGACCA+TGG 0.454179 6_2:+12758241 Msa0909710:exon
CTTTAGTAAAGATAACTTCT+GGG 0.455068 6_2:-12761148 None:intergenic
TCAGAACACTGGATTGTCAA+TGG 0.456395 6_2:-12761420 None:intergenic
AGAAGGCTGTGCATATCATA+TGG 0.459941 6_2:+12760930 Msa0909710:CDS
AGACATGAAGGCTGCTGAAT+GGG 0.460094 6_2:+12758850 Msa0909710:CDS
TCTTCAAGAGACATAACATA+AGG 0.460526 6_2:-12758515 None:intergenic
TGGACTCACTTAAGATTAGC+AGG 0.463057 6_2:+12761760 Msa0909710:three_prime_UTR
TAAAGTGGGGTTTGAGAAAA+GGG 0.468151 6_2:-12758357 None:intergenic
CCATCACCTTAGGCTTGGCT+TGG 0.469449 6_2:+12761622 Msa0909710:three_prime_UTR
GTAAAGTGGGGTTTGAGAAA+AGG 0.470216 6_2:-12758358 None:intergenic
CCTCAAGATGCTGATGGTTG+GGG 0.471802 6_2:+12758686 Msa0909710:CDS
GGTTTGAGAAAAGGGTCTTC+CGG 0.471829 6_2:-12758349 None:intergenic
GAATCATTAACCTGTAAAGT+GGG 0.479361 6_2:-12758371 None:intergenic
CTGCAAGAAATTCATGCAAT+GGG 0.479855 6_2:+12761575 Msa0909710:three_prime_UTR
GGAATCATTAACCTGTAAAG+TGG 0.480863 6_2:-12758372 None:intergenic
GTCATTGTGTAAAATATGCA+AGG 0.481297 6_2:+12761506 Msa0909710:three_prime_UTR
ATTGTGGACAAGAATAATCA+AGG 0.499873 6_2:-12758900 None:intergenic
AAGACATGAAGGCTGCTGAA+TGG 0.504100 6_2:+12758849 Msa0909710:CDS
GGTTGATGGTGATAACTGTC+AGG 0.504727 6_2:+12761830 Msa0909710:three_prime_UTR
AGAAACCAGCAGAGAACACT+AGG 0.506216 6_2:+12758222 Msa0909710:five_prime_UTR
TTACCAACTTGTTGTGGAAG+AGG 0.507121 6_2:+12758649 Msa0909710:CDS
GATGGTTGGGGATTCAGCCT+TGG 0.507224 6_2:+12758698 Msa0909710:CDS
CTTCAAGAGACATAACATAA+GGG 0.510035 6_2:-12758514 None:intergenic
GGAAGCCATCACCTTAGGCT+TGG 0.510056 6_2:+12761617 Msa0909710:three_prime_UTR
AAGGCTCTATCTGAGGTTGA+TGG 0.511695 6_2:+12761816 Msa0909710:three_prime_UTR
AGTTGCTGCACTTAAAGTAT+CGG 0.515906 6_2:+12761121 Msa0909710:CDS
TTATCATCTTGCCACACTAT+CGG 0.517607 6_2:-12758809 None:intergenic
TAATGATTACCAACTTGTTG+TGG 0.520440 6_2:+12758643 Msa0909710:CDS
ACTGCAAGAAATTCATGCAA+TGG 0.520767 6_2:+12761574 Msa0909710:three_prime_UTR
ATCAACATCATCATCGTCCT+CGG 0.529273 6_2:-12758777 None:intergenic
GCCTAAGGTGATGGCTTCCA+CGG 0.534560 6_2:-12761613 None:intergenic
AACACGATGGTTTGGCTCCA+CGG 0.534700 6_2:-12761355 None:intergenic
ACCGTGGAAGCCATCACCTT+AGG 0.543507 6_2:+12761612 Msa0909710:three_prime_UTR
GGCCTCAAGATGCTGATGGT+TGG 0.550479 6_2:+12758684 Msa0909710:CDS
CAAACCTTCTATAACGATTG+TGG 0.550589 6_2:-12758916 None:intergenic
TTTATTACTTACTCTTGGTG+AGG 0.554532 6_2:-12760966 None:intergenic
TTGAGTGCCATGGTCGGAGG+AGG 0.555658 6_2:-12758248 None:intergenic
AACCCACCAAGCCAAGCCTA+AGG 0.559832 6_2:-12761628 None:intergenic
TCAAATCTGATGGTTCTGGT+TGG 0.565426 6_2:+12758417 Msa0909710:CDS
TTATTACTTACTCTTGGTGA+GGG 0.566848 6_2:-12760965 None:intergenic
GTTCAATCACTCAAATCTGA+TGG 0.569587 6_2:+12758407 Msa0909710:CDS
CCTCCTCTTCCACAACAAGT+TGG 0.573358 6_2:-12758652 None:intergenic
CCAAGCCAAGCCTAAGGTGA+TGG 0.576268 6_2:-12761622 None:intergenic
GGATTGTCAATGGTAAAAGA+AGG 0.585441 6_2:-12761410 None:intergenic
GTAATCTGTGTGCATCAAGA+AGG 0.587847 6_2:+12761797 Msa0909710:three_prime_UTR
TCGTCCTATTAAAGACATGA+AGG 0.589532 6_2:+12758838 Msa0909710:CDS
GGCAAATTGAGTGCCATGGT+CGG 0.590720 6_2:-12758254 None:intergenic
CCAACTTGTTGTGGAAGAGG+AGG 0.593627 6_2:+12758652 Msa0909710:CDS
AATTCGAGAAGAACTAGAGA+AGG 0.595768 6_2:+12760913 Msa0909710:CDS
AAGTTATCTTTACTAAAGCA+GGG 0.597570 6_2:+12761153 Msa0909710:CDS
GGTTCTGGTTGGAAGAGAAG+AGG 0.600482 6_2:+12758428 Msa0909710:CDS
AATTGGCCTCAAGATGCTGA+TGG 0.603896 6_2:+12758680 Msa0909710:CDS
CATGAAGGCTGCTGAATGGG+AGG 0.605185 6_2:+12758853 Msa0909710:CDS
TCATTGTGTAAAATATGCAA+GGG 0.606476 6_2:+12761507 Msa0909710:three_prime_UTR
CTCTTGAAGAGAGACAAGAA+TGG 0.610559 6_2:+12758528 Msa0909710:CDS
ATATGTTTCATTGATGACAG+TGG 0.611526 6_2:-12758275 None:intergenic
GACTCACTTAAGATTAGCAG+GGG 0.614621 6_2:+12761762 Msa0909710:three_prime_UTR
GGAAGATAATGATGATGCCG+AGG 0.624630 6_2:+12758760 Msa0909710:CDS
AGTACATATACTATTTGCAG+TGG 0.627400 6_2:+12761740 Msa0909710:three_prime_UTR
AAATTGAGTGCCATGGTCGG+AGG 0.630316 6_2:-12758251 None:intergenic
GGACTCACTTAAGATTAGCA+GGG 0.632089 6_2:+12761761 Msa0909710:three_prime_UTR
AATCATTAACCTGTAAAGTG+GGG 0.632642 6_2:-12758370 None:intergenic
CCCCAACCATCAGCATCTTG+AGG 0.632853 6_2:-12758686 None:intergenic
TTGTGGACAAGAATAATCAA+GGG 0.634415 6_2:-12758899 None:intergenic
CATCAAGAAGGCTCTATCTG+AGG 0.636786 6_2:+12761809 Msa0909710:three_prime_UTR
TAAGAAACCCGATATTCAAG+AGG 0.644830 6_2:+12758577 Msa0909710:CDS
GGCTGTTTGATGTGTGACCG+TGG 0.652769 6_2:+12761596 Msa0909710:three_prime_UTR
CAATTCGCAGTGCAGATGAG+TGG 0.653894 6_2:+12761306 Msa0909710:CDS
GTTGATGGTGATAACTGTCA+GGG 0.660773 6_2:+12761831 Msa0909710:three_prime_UTR
CAGTGGCAAATTGAGTGCCA+TGG 0.668004 6_2:-12758258 None:intergenic
TGATAGCGACGATGAAGACG+AGG 0.674102 6_2:+12758475 Msa0909710:CDS
ATGATGATAAGCCGATAGTG+TGG 0.713878 6_2:+12758798 Msa0909710:CDS
GTACTTTCTAAATATGCACA+AGG 0.714903 6_2:-12761722 None:intergenic
TTGATGGTGATAACTGTCAG+GGG 0.718489 6_2:+12761832 Msa0909710:three_prime_UTR
GGAATGTTAGTCAAACACGA+TGG 0.721819 6_2:-12761368 None:intergenic
TCAAGAGGTTGTAGACACCG+AGG 0.747245 6_2:+12758592 Msa0909710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATAAAAAAACAATAGTTT+TGG - chr6_2:12758990-12759009 None:intergenic 15.0%
!!! TAAGAAAAGATTCTTTTTTT+AGG + chr6_2:12760212-12760231 Msa0909710:intron 15.0%
!!! AATGTTTTTATTTATCTTAC+TGG + chr6_2:12761941-12761960 Msa0909710:three_prime_UTR 15.0%
!! TTGTAAAGAGAAAATGAATT+GGG - chr6_2:12758317-12758336 None:intergenic 20.0%
!! TACAATACAAAACAAAAAGA+AGG + chr6_2:12758739-12758758 Msa0909710:CDS 20.0%
!! AGTTATTGTAGAGTATATTT+AGG + chr6_2:12759433-12759452 Msa0909710:intron 20.0%
!! TGTGATATAAGAAGAAAAAA+AGG - chr6_2:12760353-12760372 None:intergenic 20.0%
!! AACTAAACTAAATCAAGAAA+AGG - chr6_2:12760385-12760404 None:intergenic 20.0%
!! TAGAATACAATGCATATATA+TGG + chr6_2:12760492-12760511 Msa0909710:intron 20.0%
!!! TCATTGTATCTTTTTTGAAA+TGG + chr6_2:12760699-12760718 Msa0909710:intron 20.0%
!!! CATTGTATCTTTTTTGAAAT+GGG + chr6_2:12760700-12760719 Msa0909710:intron 20.0%
!!! TCTAACTTTAAAAGCATATT+AGG - chr6_2:12760803-12760822 None:intergenic 20.0%
!!! ACATTTTCACTTTTATTCTT+AGG + chr6_2:12760873-12760892 Msa0909710:intron 20.0%
!!! AAGATTTTATATCGTGATAA+AGG + chr6_2:12761176-12761195 Msa0909710:CDS 20.0%
!!! CTTTTACTGAATTTTGTATT+TGG - chr6_2:12761215-12761234 None:intergenic 20.0%
!! ATGAATCTTCATTTACAAAT+TGG + chr6_2:12761674-12761693 Msa0909710:three_prime_UTR 20.0%
!! ATTAAAGATAGCAATATTCA+AGG - chr6_2:12761918-12761937 None:intergenic 20.0%
! GTTGTAAAGAGAAAATGAAT+TGG - chr6_2:12758318-12758337 None:intergenic 25.0%
!!! TTATCTTGTTTTAGTTGAAG+TGG + chr6_2:12759014-12759033 Msa0909710:intron 25.0%
! GTTAGTCGATTATCAATTAA+TGG + chr6_2:12759051-12759070 Msa0909710:intron 25.0%
!! TTATCTACCTCTATTTTACT+AGG + chr6_2:12759988-12760007 Msa0909710:intron 25.0%
!! CTAAGCTAAAAATATGGTTT+TGG - chr6_2:12760103-12760122 None:intergenic 25.0%
! AACAAGCTAAGCTAAAAATA+TGG - chr6_2:12760109-12760128 None:intergenic 25.0%
!! TCTTTTCTTATATATGAGAC+CGG - chr6_2:12760202-12760221 None:intergenic 25.0%
!! ATGTATGATACGATTTTCAA+TGG + chr6_2:12760281-12760300 Msa0909710:intron 25.0%
! TAAAAGTGAAAATGTTAGAC+AGG - chr6_2:12760868-12760887 None:intergenic 25.0%
! ATGACTTTATTACTTACTCT+TGG - chr6_2:12760974-12760993 None:intergenic 25.0%
!! TATAATGATATGAAAGTGTG+TGG + chr6_2:12761070-12761089 Msa0909710:intron 25.0%
! CTTTAGTAAAGATAACTTCT+GGG - chr6_2:12761151-12761170 None:intergenic 25.0%
! AAGTTATCTTTACTAAAGCA+GGG + chr6_2:12761153-12761172 Msa0909710:CDS 25.0%
! TCATTGTGTAAAATATGCAA+GGG + chr6_2:12761507-12761526 Msa0909710:three_prime_UTR 25.0%
! ACTGGAAAACAAAGAAAAAT+TGG + chr6_2:12761959-12761978 Msa0909710:three_prime_UTR 25.0%
! ATATGTTTCATTGATGACAG+TGG - chr6_2:12758278-12758297 None:intergenic 30.0%
TTTACAACAAACTCTTCAAC+CGG + chr6_2:12758330-12758349 Msa0909710:CDS 30.0%
AATCATTAACCTGTAAAGTG+GGG - chr6_2:12758373-12758392 None:intergenic 30.0%
GAATCATTAACCTGTAAAGT+GGG - chr6_2:12758374-12758393 None:intergenic 30.0%
TGATTGAACTCTTGTTAGTT+TGG - chr6_2:12758396-12758415 None:intergenic 30.0%
!! ACATAAGGGTCATTTTCTTT+CGG - chr6_2:12758503-12758522 None:intergenic 30.0%
CTTCAAGAGACATAACATAA+GGG - chr6_2:12758517-12758536 None:intergenic 30.0%
TCTTCAAGAGACATAACATA+AGG - chr6_2:12758518-12758537 None:intergenic 30.0%
AAGAAAAATCAGACAGGTTA+TGG + chr6_2:12758553-12758572 Msa0909710:CDS 30.0%
! CATTTTCTTCTTCTTTTCCT+CGG - chr6_2:12758612-12758631 None:intergenic 30.0%
!! TAATGATTACCAACTTGTTG+TGG + chr6_2:12758643-12758662 Msa0909710:CDS 30.0%
TTGTGGACAAGAATAATCAA+GGG - chr6_2:12758902-12758921 None:intergenic 30.0%
ATTGTGGACAAGAATAATCA+AGG - chr6_2:12758903-12758922 None:intergenic 30.0%
! TTATCAATTAATGGCCGTTT+TGG + chr6_2:12759060-12759079 Msa0909710:intron 30.0%
!! TGACTGAGTTGTTTGTTATT+TGG + chr6_2:12759090-12759109 Msa0909710:intron 30.0%
TTTCCACCTGTTTATATACA+TGG + chr6_2:12759263-12759282 Msa0909710:intron 30.0%
TTCCACCTGTTTATATACAT+GGG + chr6_2:12759264-12759283 Msa0909710:intron 30.0%
!! AATTTTAGCACTCACATAAG+AGG + chr6_2:12759361-12759380 Msa0909710:intron 30.0%
GTACTAGCTGTCATATAATT+AGG + chr6_2:12759393-12759412 Msa0909710:intron 30.0%
! AGCATATACCTTTTCATACA+TGG + chr6_2:12759527-12759546 Msa0909710:intron 30.0%
CTGAAAACCATAGTTCTTTA+AGG - chr6_2:12759594-12759613 None:intergenic 30.0%
TCAAGTCATCAACATAAACT+AGG - chr6_2:12759677-12759696 None:intergenic 30.0%
!!! GGTGTCTTGAAGTATTTTTT+GGG + chr6_2:12759774-12759793 Msa0909710:intron 30.0%
!!! TTAGCTTGTTTTAGTCTAAG+TGG + chr6_2:12760119-12760138 Msa0909710:intron 30.0%
! ACGATTTTCAATGGTCATTT+TGG + chr6_2:12760290-12760309 Msa0909710:intron 30.0%
! TTCTGAGAGAATAAGAGATT+TGG + chr6_2:12760463-12760482 Msa0909710:intron 30.0%
ATGGATTTCTATCATGATTC+AGG + chr6_2:12760511-12760530 Msa0909710:intron 30.0%
! AATGTTAGACAGGATTGTTT+TGG - chr6_2:12760858-12760877 None:intergenic 30.0%
!!! CGAATTTTTTCATTGTCCTT+TGG - chr6_2:12760899-12760918 None:intergenic 30.0%
TTATTACTTACTCTTGGTGA+GGG - chr6_2:12760968-12760987 None:intergenic 30.0%
TTTATTACTTACTCTTGGTG+AGG - chr6_2:12760969-12760988 None:intergenic 30.0%
AAGTCATACAATCATTCCTT+TGG + chr6_2:12760987-12761006 Msa0909710:intron 30.0%
GATAAAATAGCTGAAACCAA+AGG - chr6_2:12761006-12761025 None:intergenic 30.0%
!! CAGCTATTTTATCACAAAGT+TGG + chr6_2:12761013-12761032 Msa0909710:intron 30.0%
GCTTTAGTAAAGATAACTTC+TGG - chr6_2:12761152-12761171 None:intergenic 30.0%
GAAGTTATCTTTACTAAAGC+AGG + chr6_2:12761152-12761171 Msa0909710:CDS 30.0%
GATGGAGACGAATAAATAAA+TGG - chr6_2:12761251-12761270 None:intergenic 30.0%
! TAAAAGAAGGAATGTTTTCC+TGG - chr6_2:12761400-12761419 None:intergenic 30.0%
!! TCTTCAATTTTTCAGAACAC+TGG - chr6_2:12761434-12761453 None:intergenic 30.0%
GTCATTGTGTAAAATATGCA+AGG + chr6_2:12761506-12761525 Msa0909710:three_prime_UTR 30.0%
ATCATATTGTATGCAGTCAA+TGG - chr6_2:12761548-12761567 None:intergenic 30.0%
!! TTGGTGGGTTAAAAGAAAAA+TGG + chr6_2:12761641-12761660 Msa0909710:three_prime_UTR 30.0%
GTACTTTCTAAATATGCACA+AGG - chr6_2:12761725-12761744 None:intergenic 30.0%
AGTACATATACTATTTGCAG+TGG + chr6_2:12761740-12761759 Msa0909710:three_prime_UTR 30.0%
TAAAGTGGGGTTTGAGAAAA+GGG - chr6_2:12758360-12758379 None:intergenic 35.0%
GGAATCATTAACCTGTAAAG+TGG - chr6_2:12758375-12758394 None:intergenic 35.0%
GTTCAATCACTCAAATCTGA+TGG + chr6_2:12758407-12758426 Msa0909710:CDS 35.0%
ATGGAGAAGAAAAATCAGAC+AGG + chr6_2:12758547-12758566 Msa0909710:CDS 35.0%
TAAGAAACCCGATATTCAAG+AGG + chr6_2:12758577-12758596 Msa0909710:CDS 35.0%
TCTACAACCTCTTGAATATC+GGG - chr6_2:12758587-12758606 None:intergenic 35.0%
GTCTACAACCTCTTGAATAT+CGG - chr6_2:12758588-12758607 None:intergenic 35.0%
TTATCATCTTGCCACACTAT+CGG - chr6_2:12758812-12758831 None:intergenic 35.0%
TCGTCCTATTAAAGACATGA+AGG + chr6_2:12758838-12758857 Msa0909710:CDS 35.0%
TTGTCCACAATCGTTATAGA+AGG + chr6_2:12758912-12758931 Msa0909710:CDS 35.0%
CAAACCTTCTATAACGATTG+TGG - chr6_2:12758919-12758938 None:intergenic 35.0%
TTCAGACAGAATTAGAGATC+TGG + chr6_2:12759215-12759234 Msa0909710:intron 35.0%
ATAAACAGGTGGAAATCAAC+AGG - chr6_2:12759258-12759277 None:intergenic 35.0%
AGTCTCCCATGTATATAAAC+AGG - chr6_2:12759272-12759291 None:intergenic 35.0%
TATACATGGGAGACTATTAG+CGG + chr6_2:12759277-12759296 Msa0909710:intron 35.0%
CACTCACATAAGAGGTAATT+AGG + chr6_2:12759369-12759388 Msa0909710:intron 35.0%
AGAGTATATTTAGGCCTAGA+TGG + chr6_2:12759442-12759461 Msa0909710:intron 35.0%
CTCTGATACCATGTATGAAA+AGG - chr6_2:12759538-12759557 None:intergenic 35.0%
GAACAAGGAGTAGTCAAAAT+AGG - chr6_2:12759621-12759640 None:intergenic 35.0%
CTTGCAATATCACACAATTG+TGG + chr6_2:12759650-12759669 Msa0909710:intron 35.0%
GAAATGATCCAGTAGCTATA+TGG + chr6_2:12759706-12759725 Msa0909710:intron 35.0%
TTCACTTTCCATATAGCTAC+TGG - chr6_2:12759717-12759736 None:intergenic 35.0%
! GAACACACGTTTTCATAAGA+AGG + chr6_2:12759746-12759765 Msa0909710:intron 35.0%
! ACGTTTTCATAAGAAGGACT+TGG + chr6_2:12759752-12759771 Msa0909710:intron 35.0%
! CGTTTTCATAAGAAGGACTT+GGG + chr6_2:12759753-12759772 Msa0909710:intron 35.0%
!!! GGGTGTCTTGAAGTATTTTT+TGG + chr6_2:12759773-12759792 Msa0909710:intron 35.0%
!!! GTATTTTTTGGGTGTCAAAG+TGG + chr6_2:12759785-12759804 Msa0909710:intron 35.0%
AAAGATACCAATAGCATTCC+TGG - chr6_2:12759811-12759830 None:intergenic 35.0%
AGCTTATGATTCTGCTTCAT+AGG - chr6_2:12759906-12759925 None:intergenic 35.0%
! TAGCTAGCCTAGTAAAATAG+AGG - chr6_2:12759998-12760017 None:intergenic 35.0%
TTCTTATATATGAGACCGGA+GGG - chr6_2:12760198-12760217 None:intergenic 35.0%
TTTCTTATATATGAGACCGG+AGG - chr6_2:12760199-12760218 None:intergenic 35.0%
CTCACTTTGCACACATAAAA+AGG - chr6_2:12760421-12760440 None:intergenic 35.0%
AAGTAAAATTGAACACCACC+AGG - chr6_2:12760728-12760747 None:intergenic 35.0%
ATCACTACTATAGCCAAATG+CGG - chr6_2:12760774-12760793 None:intergenic 35.0%
GCTTGACTGTAAACATGATA+TGG - chr6_2:12760831-12760850 None:intergenic 35.0%
! CACTTTTATTCTTAGGCCAA+AGG + chr6_2:12760880-12760899 Msa0909710:intron 35.0%
AATTCGAGAAGAACTAGAGA+AGG + chr6_2:12760913-12760932 Msa0909710:CDS 35.0%
AGTTGCTGCACTTAAAGTAT+CGG + chr6_2:12761121-12761140 Msa0909710:CDS 35.0%
GACCATGACGAATTTCTATT+TGG + chr6_2:12761272-12761291 Msa0909710:intron 35.0%
CACCAAATAGAAATTCGTCA+TGG - chr6_2:12761277-12761296 None:intergenic 35.0%
CATGACGAATTTCTATTTGG+TGG + chr6_2:12761275-12761294 Msa0909710:intron 35.0%
AGATGAGTGGTCAAAAATCA+TGG + chr6_2:12761319-12761338 Msa0909710:CDS 35.0%
!!! ATGGCATTTTTTTACTACCG+TGG + chr6_2:12761338-12761357 Msa0909710:CDS 35.0%
GGATTGTCAATGGTAAAAGA+AGG - chr6_2:12761413-12761432 None:intergenic 35.0%
ATGGAAATACTTCAGCGATA+TGG - chr6_2:12761476-12761495 None:intergenic 35.0%
CACAATGACAAAATGCTAGA+TGG - chr6_2:12761495-12761514 None:intergenic 35.0%
ACTGCAAGAAATTCATGCAA+TGG + chr6_2:12761574-12761593 Msa0909710:three_prime_UTR 35.0%
CTGCAAGAAATTCATGCAAT+GGG + chr6_2:12761575-12761594 Msa0909710:three_prime_UTR 35.0%
GTAAAGTGGGGTTTGAGAAA+AGG - chr6_2:12758361-12758380 None:intergenic 40.0%
TTTCTCAAACCCCACTTTAC+AGG + chr6_2:12758361-12758380 Msa0909710:CDS 40.0%
TCACTCAAATCTGATGGTTC+TGG + chr6_2:12758413-12758432 Msa0909710:CDS 40.0%
!! TCAAATCTGATGGTTCTGGT+TGG + chr6_2:12758417-12758436 Msa0909710:CDS 40.0%
CTCTTGAAGAGAGACAAGAA+TGG + chr6_2:12758528-12758547 Msa0909710:CDS 40.0%
!! TTACCAACTTGTTGTGGAAG+AGG + chr6_2:12758649-12758668 Msa0909710:CDS 40.0%
TCTTGTCGAAAAACTGTCCA+AGG - chr6_2:12758718-12758737 None:intergenic 40.0%
ATCAACATCATCATCGTCCT+CGG - chr6_2:12758780-12758799 None:intergenic 40.0%
ATGATGATAAGCCGATAGTG+TGG + chr6_2:12758798-12758817 Msa0909710:CDS 40.0%
GCAGCCTTCATGTCTTTAAT+AGG - chr6_2:12758845-12758864 None:intergenic 40.0%
TGCTTGAGTAAGTAGCTGAA+TGG + chr6_2:12758956-12758975 Msa0909710:intron 40.0%
TCAGTCAGAGTTCTCCAAAA+CGG - chr6_2:12759077-12759096 None:intergenic 40.0%
CTCCCATGTATATAAACAGG+TGG - chr6_2:12759269-12759288 None:intergenic 40.0%
! GAGACTATTAGCGGACAATT+AGG + chr6_2:12759286-12759305 Msa0909710:intron 40.0%
AGCGGACAATTAGGTGTATT+TGG + chr6_2:12759295-12759314 Msa0909710:intron 40.0%
CCTAGATGGAGTGATGTATT+CGG + chr6_2:12759456-12759475 Msa0909710:intron 40.0%
CTAGATGGAGTGATGTATTC+GGG + chr6_2:12759457-12759476 Msa0909710:intron 40.0%
TAGATGGAGTGATGTATTCG+GGG + chr6_2:12759458-12759477 Msa0909710:intron 40.0%
TTTGGAAAACCAACACCTAG+GGG - chr6_2:12759561-12759580 None:intergenic 40.0%
GTTTGGAAAACCAACACCTA+GGG - chr6_2:12759562-12759581 None:intergenic 40.0%
AGTTTGGAAAACCAACACCT+AGG - chr6_2:12759563-12759582 None:intergenic 40.0%
TCTGCTGCCTTAAAGAACTA+TGG + chr6_2:12759584-12759603 Msa0909710:intron 40.0%
TGCAAGTTGCAACATGAACA+AGG - chr6_2:12759636-12759655 None:intergenic 40.0%
!! GTTGATGACTTGATTGTCTC+AGG + chr6_2:12759684-12759703 Msa0909710:intron 40.0%
ATTCTTGAGACTGGGATTCT+AGG + chr6_2:12759861-12759880 Msa0909710:intron 40.0%
ATTGTCAATGTCGTTCAGGT+TGG - chr6_2:12759956-12759975 None:intergenic 40.0%
ACCTGAACGACATTGACAAT+TGG + chr6_2:12759956-12759975 Msa0909710:intron 40.0%
ACCAATTGTCAATGTCGTTC+AGG - chr6_2:12759960-12759979 None:intergenic 40.0%
ATTCATGCAACAACCGACAA+TGG + chr6_2:12760050-12760069 Msa0909710:intron 40.0%
AACCGACAATGGATCATTGA+AGG + chr6_2:12760061-12760080 Msa0909710:intron 40.0%
AGCCTTCAATGATCCATTGT+CGG - chr6_2:12760066-12760085 None:intergenic 40.0%
ATGGATCATTGAAGGCTGAA+TGG + chr6_2:12760069-12760088 Msa0909710:intron 40.0%
CTAAGTGGCTGAATGCTAAT+TGG + chr6_2:12760134-12760153 Msa0909710:intron 40.0%
TTGAAACTATCTACTCCCTC+CGG + chr6_2:12760180-12760199 Msa0909710:intron 40.0%
GCTACAACTAGCAATCTACT+CGG - chr6_2:12760327-12760346 None:intergenic 40.0%
AGTAGATTGCTAGTTGTAGC+TGG + chr6_2:12760327-12760346 Msa0909710:intron 40.0%
CATGTATACACACAGGTTCT+TGG - chr6_2:12760539-12760558 None:intergenic 40.0%
AGTCTCTCATGTATACACAC+AGG - chr6_2:12760546-12760565 None:intergenic 40.0%
!!! TCTTTTTTGAAATGGGCTCC+TGG + chr6_2:12760707-12760726 Msa0909710:intron 40.0%
GCGGAAGTTATTTGCACATA+AGG - chr6_2:12760755-12760774 None:intergenic 40.0%
GTGCAAATAACTTCCGCATT+TGG + chr6_2:12760758-12760777 Msa0909710:intron 40.0%
AGAAGGCTGTGCATATCATA+TGG + chr6_2:12760930-12760949 Msa0909710:CDS 40.0%
AGAAATTCGTCATGGTCAGA+TGG - chr6_2:12761269-12761288 None:intergenic 40.0%
GTTAGTCAAACACGATGGTT+TGG - chr6_2:12761366-12761385 None:intergenic 40.0%
GGAATGTTAGTCAAACACGA+TGG - chr6_2:12761371-12761390 None:intergenic 40.0%
GACTAACATTCCAGATTTCC+AGG + chr6_2:12761379-12761398 Msa0909710:CDS 40.0%
! GGAATGTTTTCCTGGAAATC+TGG - chr6_2:12761392-12761411 None:intergenic 40.0%
TCAGAACACTGGATTGTCAA+TGG - chr6_2:12761423-12761442 None:intergenic 40.0%
TGGACTCACTTAAGATTAGC+AGG + chr6_2:12761760-12761779 Msa0909710:three_prime_UTR 40.0%
GGACTCACTTAAGATTAGCA+GGG + chr6_2:12761761-12761780 Msa0909710:three_prime_UTR 40.0%
GACTCACTTAAGATTAGCAG+GGG + chr6_2:12761762-12761781 Msa0909710:three_prime_UTR 40.0%
GTAATCTGTGTGCATCAAGA+AGG + chr6_2:12761797-12761816 Msa0909710:three_prime_UTR 40.0%
!! GTTGATGGTGATAACTGTCA+GGG + chr6_2:12761831-12761850 Msa0909710:three_prime_UTR 40.0%
!! TTGATGGTGATAACTGTCAG+GGG + chr6_2:12761832-12761851 Msa0909710:three_prime_UTR 40.0%
AGAAACCAGCAGAGAACACT+AGG + chr6_2:12758222-12758241 Msa0909710:five_prime_UTR 45.0%
GGTTTGAGAAAAGGGTCTTC+CGG - chr6_2:12758352-12758371 None:intergenic 45.0%
TGGAAGAGGAGGATCCTAAT+TGG + chr6_2:12758663-12758682 Msa0909710:CDS 45.0%
TCAGCATCTTGAGGCCAATT+AGG - chr6_2:12758680-12758699 None:intergenic 45.0%
! AATTGGCCTCAAGATGCTGA+TGG + chr6_2:12758680-12758699 Msa0909710:CDS 45.0%
! GGAAGATAATGATGATGCCG+AGG + chr6_2:12758760-12758779 Msa0909710:CDS 45.0%
AAGACATGAAGGCTGCTGAA+TGG + chr6_2:12758849-12758868 Msa0909710:CDS 45.0%
AGACATGAAGGCTGCTGAAT+GGG + chr6_2:12758850-12758869 Msa0909710:CDS 45.0%
!! CACACGCACGAGAAAGTATT+CGG - chr6_2:12759163-12759182 None:intergenic 45.0%
CCGAATACATCACTCCATCT+AGG - chr6_2:12759459-12759478 None:intergenic 45.0%
!! CTTTAAGGCAGCAGAGAGTT+TGG - chr6_2:12759579-12759598 None:intergenic 45.0%
AAAGTGGCCAGGAATGCTAT+TGG + chr6_2:12759801-12759820 Msa0909710:intron 45.0%
! ATGACGTCGAGAGCACATTT+GGG - chr6_2:12759843-12759862 None:intergenic 45.0%
! AATGACGTCGAGAGCACATT+TGG - chr6_2:12759844-12759863 None:intergenic 45.0%
TCGACGTCATTCTTGAGACT+GGG + chr6_2:12759853-12759872 Msa0909710:intron 45.0%
CATAGGCACACTAACAGGTT+AGG - chr6_2:12759889-12759908 None:intergenic 45.0%
TGCTTCATAGGCACACTAAC+AGG - chr6_2:12759894-12759913 None:intergenic 45.0%
TCATAAGCTTGCATTAGCCC+AGG + chr6_2:12759917-12759936 Msa0909710:intron 45.0%
CATAAGCTTGCATTAGCCCA+GGG + chr6_2:12759918-12759937 Msa0909710:intron 45.0%
TTGGTCAAGAAAAGGACCCT+GGG - chr6_2:12759937-12759956 None:intergenic 45.0%
!! CGTTCAGGTTGGTCAAGAAA+AGG - chr6_2:12759945-12759964 None:intergenic 45.0%
GGAGGGAGTAGATAGTTTCA+AGG - chr6_2:12760181-12760200 None:intergenic 45.0%
!!! TTTTTGAAATGGGCTCCTGG+TGG + chr6_2:12760710-12760729 Msa0909710:intron 45.0%
CATCAAGAAGGCTCTATCTG+AGG + chr6_2:12761809-12761828 Msa0909710:three_prime_UTR 45.0%
! AAGGCTCTATCTGAGGTTGA+TGG + chr6_2:12761816-12761835 Msa0909710:three_prime_UTR 45.0%
!! GGTTGATGGTGATAACTGTC+AGG + chr6_2:12761830-12761849 Msa0909710:three_prime_UTR 45.0%
! GGGCATCAGCATTTTGTAGT+AGG + chr6_2:12761852-12761871 Msa0909710:three_prime_UTR 45.0%
!! ATATCATTATAATATATAAT+AGG - chr6_2:12761061-12761080 None:intergenic 5.0%
AAATTGAGTGCCATGGTCGG+AGG - chr6_2:12758254-12758273 None:intergenic 50.0%
GGCAAATTGAGTGCCATGGT+CGG - chr6_2:12758257-12758276 None:intergenic 50.0%
CAGTGGCAAATTGAGTGCCA+TGG - chr6_2:12758261-12758280 None:intergenic 50.0%
! GGTTCTGGTTGGAAGAGAAG+AGG + chr6_2:12758428-12758447 Msa0909710:CDS 50.0%
! TGATAGCGACGATGAAGACG+AGG + chr6_2:12758475-12758494 Msa0909710:CDS 50.0%
TCAAGAGGTTGTAGACACCG+AGG + chr6_2:12758592-12758611 Msa0909710:CDS 50.0%
CCTCCTCTTCCACAACAAGT+TGG - chr6_2:12758655-12758674 None:intergenic 50.0%
!! CCAACTTGTTGTGGAAGAGG+AGG + chr6_2:12758652-12758671 Msa0909710:CDS 50.0%
GCCTCAAGATGCTGATGGTT+GGG + chr6_2:12758685-12758704 Msa0909710:CDS 50.0%
CCTCAAGATGCTGATGGTTG+GGG + chr6_2:12758686-12758705 Msa0909710:CDS 50.0%
TACATGGTATCAGAGCCCCT+AGG + chr6_2:12759543-12759562 Msa0909710:intron 50.0%
!! TTTTGGGTGTCAAAGTGGCC+AGG + chr6_2:12759790-12759809 Msa0909710:intron 50.0%
CTCGACGTCATTCTTGAGAC+TGG + chr6_2:12759852-12759871 Msa0909710:intron 50.0%
GTTGGTCAAGAAAAGGACCC+TGG - chr6_2:12759938-12759957 None:intergenic 50.0%
CAATTCGCAGTGCAGATGAG+TGG + chr6_2:12761306-12761325 Msa0909710:CDS 50.0%
! AACACGATGGTTTGGCTCCA+CGG - chr6_2:12761358-12761377 None:intergenic 50.0%
GGCCTCAAGATGCTGATGGT+TGG + chr6_2:12758684-12758703 Msa0909710:CDS 55.0%
CCCCAACCATCAGCATCTTG+AGG - chr6_2:12758689-12758708 None:intergenic 55.0%
GATGGTTGGGGATTCAGCCT+TGG + chr6_2:12758698-12758717 Msa0909710:CDS 55.0%
CATGAAGGCTGCTGAATGGG+AGG + chr6_2:12758853-12758872 Msa0909710:CDS 55.0%
!! CGCACGAGAAAGTATTCGGC+AGG - chr6_2:12759159-12759178 None:intergenic 55.0%
GTATCAGAGCCCCTAGGTGT+TGG + chr6_2:12759549-12759568 Msa0909710:intron 55.0%
! CGTCGAGAGCACATTTGGGT+TGG - chr6_2:12759839-12759858 None:intergenic 55.0%
GGCTGTTTGATGTGTGACCG+TGG + chr6_2:12761596-12761615 Msa0909710:three_prime_UTR 55.0%
ACCGTGGAAGCCATCACCTT+AGG + chr6_2:12761612-12761631 Msa0909710:three_prime_UTR 55.0%
! GCCTAAGGTGATGGCTTCCA+CGG - chr6_2:12761616-12761635 None:intergenic 55.0%
GGAAGCCATCACCTTAGGCT+TGG + chr6_2:12761617-12761636 Msa0909710:three_prime_UTR 55.0%
CCAAGCCAAGCCTAAGGTGA+TGG - chr6_2:12761625-12761644 None:intergenic 55.0%
CCATCACCTTAGGCTTGGCT+TGG + chr6_2:12761622-12761641 Msa0909710:three_prime_UTR 55.0%
!! TCACCTTAGGCTTGGCTTGG+TGG + chr6_2:12761625-12761644 Msa0909710:three_prime_UTR 55.0%
!! CACCTTAGGCTTGGCTTGGT+GGG + chr6_2:12761626-12761645 Msa0909710:three_prime_UTR 55.0%
AACCCACCAAGCCAAGCCTA+AGG - chr6_2:12761631-12761650 None:intergenic 55.0%
GGCTGCCTAGTGTTCTCTGC+TGG - chr6_2:12758230-12758249 None:intergenic 60.0%
TTGAGTGCCATGGTCGGAGG+AGG - chr6_2:12758251-12758270 None:intergenic 60.0%
TAGGCAGCCTCCTCCGACCA+TGG + chr6_2:12758241-12758260 Msa0909710:exon 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 12758208 12761988 12758208 ID=Msa0909710;Name=Msa0909710
chr6_2 mRNA 12758208 12761988 12758208 ID=Msa0909710-mRNA-1;Parent=Msa0909710;Name=Msa0909710-mRNA-1;_AED=0.09;_eAED=0.09;_QI=52|1|1|1|1|1|4|546|334
chr6_2 exon 12758208 12758933 12758208 ID=Msa0909710-mRNA-1:exon:2863;Parent=Msa0909710-mRNA-1
chr6_2 exon 12760895 12760976 12760895 ID=Msa0909710-mRNA-1:exon:2864;Parent=Msa0909710-mRNA-1
chr6_2 exon 12761086 12761197 12761086 ID=Msa0909710-mRNA-1:exon:2865;Parent=Msa0909710-mRNA-1
chr6_2 exon 12761306 12761988 12761306 ID=Msa0909710-mRNA-1:exon:2866;Parent=Msa0909710-mRNA-1
chr6_2 five_prime_UTR 12758208 12758259 12758208 ID=Msa0909710-mRNA-1:five_prime_utr;Parent=Msa0909710-mRNA-1
chr6_2 CDS 12758260 12758933 12758260 ID=Msa0909710-mRNA-1:cds;Parent=Msa0909710-mRNA-1
chr6_2 CDS 12760895 12760976 12760895 ID=Msa0909710-mRNA-1:cds;Parent=Msa0909710-mRNA-1
chr6_2 CDS 12761086 12761197 12761086 ID=Msa0909710-mRNA-1:cds;Parent=Msa0909710-mRNA-1
chr6_2 CDS 12761306 12761442 12761306 ID=Msa0909710-mRNA-1:cds;Parent=Msa0909710-mRNA-1
chr6_2 three_prime_UTR 12761443 12761988 12761443 ID=Msa0909710-mRNA-1:three_prime_utr;Parent=Msa0909710-mRNA-1
Gene Sequence

>Msa0909710

ATGGCACTCAATTTGCCACTGTCATCAATGAAACATATAAACTTCAACGAGAAACCCAATTCATTTTCTCTTTACAACAAACTCTTCAACCGGAAGACCCTTTTCTCAAACCCCACTTTACAGGTTAATGATTCCAAACTAACAAGAGTTCAATCACTCAAATCTGATGGTTCTGGTTGGAAGAGAAGAGGTAAAGAATCATACAGTGACAGTGATGATAGCGACGATGAAGACGAGGCACCGAAAGAAAATGACCCTTATGTTATGTCTCTTGAAGAGAGACAAGAATGGAGAAGAAAAATCAGACAGGTTATGGATAAGAAACCCGATATTCAAGAGGTTGTAGACACCGAGGAAAAGAAGAAGAAAATGCAAAAGCTAATTAATGATTACCAACTTGTTGTGGAAGAGGAGGATCCTAATTGGCCTCAAGATGCTGATGGTTGGGGATTCAGCCTTGGACAGTTTTTCGACAAGATTACAATACAAAACAAAAAGAAGGAAGATAATGATGATGCCGAGGACGATGATGATGTTGATGATGATAAGCCGATAGTGTGGCAAGATGATAATTACATTCGTCCTATTAAAGACATGAAGGCTGCTGAATGGGAGGAAACTGTGTTCAAAGATATTAGTCCCTTGATTATTCTTGTCCACAATCGTTATAGAAGGCCAAAGGACAATGAAAAAATTCGAGAAGAACTAGAGAAGGCTGTGCATATCATATGGAACTGCAGATTACCCTCACCAAGATGTGTGGCACTTGACGCTGTTGTTGAGACTGAACTAGTTGCTGCACTTAAAGTATCGGTTTTCCCAGAAGTTATCTTTACTAAAGCAGGGAAGATTTTATATCGTGATAAAGCAATTCGCAGTGCAGATGAGTGGTCAAAAATCATGGCATTTTTTTACTACCGTGGAGCCAAACCATCGTGTTTGACTAACATTCCAGATTTCCAGGAAAACATTCCTTCTTTTACCATTGACAATCCAGTGTTCTGA

Protein sequence

>Msa0909710

MALNLPLSSMKHINFNEKPNSFSLYNKLFNRKTLFSNPTLQVNDSKLTRVQSLKSDGSGWKRRGKESYSDSDDSDDEDEAPKENDPYVMSLEERQEWRRKIRQVMDKKPDIQEVVDTEEKKKKMQKLINDYQLVVEEEDPNWPQDADGWGFSLGQFFDKITIQNKKKEDNDDAEDDDDVDDDKPIVWQDDNYIRPIKDMKAAEWEETVFKDISPLIILVHNRYRRPKDNEKIREELEKAVHIIWNCRLPSPRCVALDAVVETELVAALKVSVFPEVIFTKAGKILYRDKAIRSADEWSKIMAFFYYRGAKPSCLTNIPDFQENIPSFTIDNPVF*