AlfalfaGEDB | Msa0804140

M. sativa cultivar zhongmu-4 / Msa0804140

KEGG: K21373
GO: -
PFAM: PF00201.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0804140	XP_003613028.1	93.151	146	10	0	1	146	329	474	5.03e-94	290

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0804140	sp\|U3U992\|UGT8_CATRO	66.418	134	44	1	10	143	347	479	8.39e-59	192

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0804140	G7JWC5	93.151	146	10	0	1	146	329	474	2.40e-94	290

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0075850	Msa0804140	0.804312	2.294665e-49	-8.615850e-47
Msa0132180	Msa0804140	0.800442	1.438789e-48	-8.615850e-47
Msa0168390	Msa0804140	0.803739	3.019041e-49	-8.615850e-47
Msa0484690	Msa0804140	0.809368	1.958598e-50	-8.615850e-47
Msa0804130	Msa0804140	0.817972	2.499206e-52	-8.615850e-47
Msa0804140	Msa1323060	0.805202	1.495807e-49	-8.615850e-47
Msa0804140	Msa1374440	0.812147	4.907513e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0804140	MtrunA17_Chr5g0412131	93.151	146	10	0	1	146	329	474	4.62e-98	290
Msa0804140	MtrunA17_Chr5g0412101	90.411	146	14	0	1	146	330	475	1.46e-95	283
Msa0804140	MtrunA17_Chr5g0412111	84.932	146	22	0	1	146	321	466	3.58e-89	267
Msa0804140	MtrunA17_Chr6g0454371	44.615	130	71	1	13	141	41	170	1.52e-39	131
Msa0804140	MtrunA17_Chr6g0454351	46.721	122	64	1	19	139	341	462	2.09e-37	132
Msa0804140	MtrunA17_Chr6g0454171	44.800	125	68	1	16	139	183	307	1.01e-35	125
Msa0804140	MtrunA17_Chr6g0454141	45.082	122	66	1	19	139	356	477	1.17e-35	128
Msa0804140	MtrunA17_Chr8g0336331	44.000	125	69	1	18	141	352	476	1.18e-35	128
Msa0804140	MtrunA17_Chr6g0454271	41.600	125	72	1	18	141	162	286	1.69e-35	124
Msa0804140	MtrunA17_Chr6g0454331	45.082	122	66	1	18	138	354	475	2.22e-35	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0804140	AT5G05900.1	49.600	125	62	1	18	141	323	447	9.73e-37	130
Msa0804140	AT3G11340.1	41.958	143	77	2	2	143	309	446	2.01e-34	124
Msa0804140	AT5G05880.1	46.457	127	67	1	18	143	324	450	3.69e-34	124
Msa0804140	AT3G46660.1	44.882	127	69	1	18	143	331	457	2.83e-33	122
Msa0804140	AT5G05890.1	44.882	127	69	1	18	143	328	454	4.35e-33	121
Msa0804140	AT5G05860.1	47.101	138	67	2	5	141	315	447	1.21e-32	120
Msa0804140	AT1G78270.1	46.377	138	65	4	16	144	352	489	4.39e-32	119
Msa0804140	AT3G46670.1	45.238	126	68	1	19	143	325	450	5.33e-32	118
Msa0804140	AT5G05870.1	45.968	124	66	1	19	141	331	454	2.71e-31	116
Msa0804140	AT1G22400.1	44.800	125	67	2	16	138	354	478	7.37e-31	115

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Find 39 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGAAAGGGATGATTGT+GGG	0.472351	5_3:+19703151	Msa0804140:CDS
AAATAAGGCCAACAAATCAT+AGG	0.459700	5_3:-19703274	None:intergenic
AAGAGAAAGGGATGATTGTG+GGG	0.603887	5_3:+19703152	Msa0804140:CDS
AAGATTTGCTTGAGTATATA+AGG	0.294786	5_3:+19703506	Msa0804140:CDS
AAGGGACTACTAAAGAGAAA+GGG	0.595105	5_3:+19703140	Msa0804140:CDS
ACCACCAGGACTCACACTCT+TGG	0.441655	5_3:-19703464	None:intergenic
ACTTTGGAGAGTGTGGTTTG+TGG	0.513568	5_3:+19703247	Msa0804140:CDS
AGAAAGGGATGATTGTGGGG+TGG	0.586735	5_3:+19703155	Msa0804140:CDS
AGCAATGGATATGGCTAAGT+TGG	0.475852	5_3:+19703438	Msa0804140:CDS
AGGACTGTTGAAGGAGCTTG+AGG	0.615182	5_3:+19703117	Msa0804140:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACACCAATTGCTTTGT+GGG	-	chr5_3:19703203-19703222	None:intergenic	30.0%
AAAAAACACCAATTGCTTTG+TGG	-	chr5_3:19703204-19703223	None:intergenic	30.0%
AAATAAGGCCAACAAATCAT+AGG	-	chr5_3:19703277-19703296	None:intergenic	30.0%
AGTGGTTGATCAGAAAAATA+AGG	-	chr5_3:19703292-19703311	None:intergenic	30.0%
GAATATGGTGAATGATGTTA+TGG	+	chr5_3:19703387-19703406	Msa0804140:CDS	30.0%
TGAATGATGTTATGGTGAAT+AGG	+	chr5_3:19703395-19703414	Msa0804140:CDS	30.0%
CAAATCTTGAAAGTTGTTGT+AGG	-	chr5_3:19703494-19703513	None:intergenic	30.0%
ACAAGAAAAAGGACTGTTGA+AGG	+	chr5_3:19703108-19703127	Msa0804140:CDS	35.0%
AAGGGACTACTAAAGAGAAA+GGG	+	chr5_3:19703140-19703159	Msa0804140:CDS	35.0%
TAAAGAGAAAGGGATGATTG+TGG	+	chr5_3:19703150-19703169	Msa0804140:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	19703103	19703543	19703103	ID=Msa0804140;Name=Msa0804140
chr5_3	mRNA	19703103	19703543	19703103	ID=Msa0804140-mRNA-1;Parent=Msa0804140;Name=Msa0804140-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|146
chr5_3	exon	19703103	19703543	19703103	ID=Msa0804140-mRNA-1:exon:8079;Parent=Msa0804140-mRNA-1
chr5_3	CDS	19703103	19703543	19703103	ID=Msa0804140-mRNA-1:cds;Parent=Msa0804140-mRNA-1

Gene Sequence

>Msa0804140

ATGGTACAAGAAAAAGGACTGTTGAAGGAGCTTGAGGAAGGGACTACTAAAGAGAAAGGGATGATTGTGGGGTGGGTTCCACAAGAGGAAGTTTTGTCCCACAAAGCAATTGGTGTTTTTTTGACACATAGTGGATGGAATTCTACTTTGGAGAGTGTGGTTTGTGGTGTGCCTATGATTTGTTGGCCTTATTTTTCTGATCAACCACTTAACAATAGATTTGTAAGTGAGATTTGGAAGCTTGGATTGGATATGAAAGATGTTTGTGATAGGAAGGTTGTGGAGAATATGGTGAATGATGTTATGGTGAATAGGAAGGAGGAGTTTGTTAGATCAGCAATGGATATGGCTAAGTTGGCATCCAAGAGTGTGAGTCCTGGTGGTTCTTCCTACAACAACTTTCAAGATTTGCTTGAGTATATAAGGTCTACTAGCCCATAA

Protein sequence

>Msa0804140

MVQEKGLLKELEEGTTKEKGMIVGWVPQEEVLSHKAIGVFLTHSGWNSTLESVVCGVPMICWPYFSDQPLNNRFVSEIWKLGLDMKDVCDRKVVENMVNDVMVNRKEEFVRSAMDMAKLASKSVSPGGSSYNNFQDLLEYIRSTSP*