AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1323060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323060 MtrunA17_Chr8g0355811 89.744 156 16 0 1 156 1 156 4.30e-103 291
Msa1323060 MtrunA17_Chr8g0355801 89.103 156 17 0 1 156 1 156 1.38e-101 288
Msa1323060 MtrunA17_Chr8g0355821 85.714 154 22 0 1 154 1 154 2.06e-97 277
Msa1323060 MtrunA17_Chr8g0355791 83.974 156 25 0 1 156 1 156 9.78e-96 273
Msa1323060 MtrunA17_Chr8g0355771 82.692 156 27 0 1 156 1 156 1.38e-94 270
Msa1323060 MtrunA17_Chr8g0355741 74.522 157 39 1 1 156 1 157 1.58e-84 245
Msa1323060 MtrunA17_Chr8g0355661 69.427 157 46 2 1 156 1 156 1.12e-77 227
Msa1323060 MtrunA17_Chr8g0355721 67.516 157 49 2 1 156 1 156 8.95e-77 225
Msa1323060 MtrunA17_Chr8g0355781 68.421 152 47 1 1 151 1 152 1.12e-75 222
Msa1323060 MtrunA17_Chr8g0355761 65.132 152 52 1 1 151 1 152 9.49e-73 215
Msa1323060 MtrunA17_Chr8g0355641 62.821 156 57 1 1 155 1 156 9.79e-72 213
Msa1323060 MtrunA17_Chr1g0160371 43.137 153 83 3 1 150 1 152 2.80e-39 130
Msa1323060 MtrunA17_Chr1g0160381 38.562 153 90 3 1 150 5 156 1.82e-37 125
Msa1323060 MtrunA17_Chr1g0160391 38.462 156 87 5 1 148 1 155 7.51e-29 103
Msa1323060 MtrunA17_Chr8g0339261 33.333 150 96 4 6 153 8 155 4.19e-27 99.4
Msa1323060 MtrunA17_Chr1g0160801 39.189 148 80 6 7 151 7 147 1.69e-22 87.4
Msa1323060 MtrunA17_Chr1g0160351 40.860 93 52 2 61 150 1 93 3.39e-20 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323060 AT1G70890.1 37.255 153 92 4 3 152 7 158 3.49e-25 94.7
Msa1323060 AT5G28010.1 34.641 153 96 4 3 152 15 166 3.68e-25 95.1
Msa1323060 AT5G28010.2 34.641 153 96 4 3 152 15 166 3.68e-25 95.1
Msa1323060 AT1G70840.1 34.641 153 96 4 3 152 20 171 5.06e-24 92.4
Msa1323060 AT1G70830.5 35.294 153 95 4 3 152 22 173 4.60e-23 89.7
Msa1323060 AT1G70830.3 35.065 154 96 4 3 153 22 174 7.15e-23 90.1
Msa1323060 AT1G70830.4 35.948 153 94 4 3 152 137 288 1.75e-22 90.9
Msa1323060 AT1G70830.4 32.990 97 63 2 59 153 31 127 1.41e-11 61.2
Msa1323060 AT1G70830.2 35.065 154 96 4 3 153 22 174 4.58e-22 89.0
Msa1323060 AT1G70830.1 35.948 153 94 4 3 152 184 335 6.37e-22 90.1
Msa1323060 AT1G70830.1 35.065 154 96 4 3 153 22 174 9.13e-22 89.7
Msa1323060 AT5G28000.1 33.333 153 98 4 3 152 13 164 1.03e-21 86.3
Msa1323060 AT1G70850.3 36.364 143 87 4 13 152 175 316 5.06e-21 87.4
Msa1323060 AT1G70850.3 34.000 150 95 4 3 149 9 157 1.63e-20 85.9
Msa1323060 AT1G70850.1 36.364 143 87 4 13 152 175 316 5.06e-21 87.4
Msa1323060 AT1G70850.1 34.000 150 95 4 3 149 9 157 1.63e-20 85.9
Msa1323060 AT1G70850.2 34.000 150 95 4 3 149 9 157 6.16e-21 85.9
Msa1323060 AT4G23670.1 33.117 154 97 5 1 151 1 151 1.66e-19 80.1
Msa1323060 AT1G70870.1 42.268 97 54 2 55 150 43 138 3.25e-19 79.0
Msa1323060 AT1G14930.1 28.662 157 108 4 1 155 1 155 2.40e-18 77.0
Msa1323060 AT2G01520.1 28.758 153 105 4 1 151 1 151 1.25e-17 75.1
Msa1323060 AT1G70880.1 31.373 153 101 4 3 152 8 159 2.24e-17 74.7
Msa1323060 AT1G24020.1 32.258 155 96 4 1 150 1 151 1.20e-16 72.8
Msa1323060 AT1G24020.2 32.258 155 96 4 1 150 1 151 1.20e-16 72.8
Msa1323060 AT1G23130.1 28.188 149 104 3 3 149 10 157 1.71e-16 72.4
Msa1323060 AT1G23120.1 29.787 141 93 4 10 149 10 145 1.96e-16 72.0
Msa1323060 AT1G23120.2 29.787 141 93 4 10 149 60 195 4.61e-16 72.0
Msa1323060 AT1G14940.1 27.389 157 110 4 1 155 1 155 1.15e-15 70.1
Msa1323060 AT2G01530.1 28.105 153 106 4 1 151 1 151 1.58e-15 69.7
Msa1323060 AT1G35260.1 30.556 144 95 4 9 149 8 149 2.40e-15 69.3
Msa1323060 AT4G14060.1 27.451 153 107 4 1 151 1 151 4.57e-15 68.6
Msa1323060 AT4G23680.1 28.758 153 103 5 1 150 1 150 7.45e-15 67.8
Msa1323060 AT1G14950.1 26.752 157 111 4 1 155 1 155 1.09e-14 67.8
Msa1323060 AT1G30990.1 29.139 151 102 5 1 149 1 148 1.81e-14 67.0
Msa1323060 AT1G35310.1 30.935 139 92 4 13 149 12 148 4.23e-14 65.9
Msa1323060 AT3G26460.1 27.451 153 108 3 1 151 1 152 3.52e-13 63.5
Msa1323060 AT1G14960.1 25.161 155 112 4 1 153 1 153 3.34e-12 60.8
Msa1323060 AT3G26450.1 24.183 153 113 3 1 151 1 152 1.44e-11 59.3

Find 51 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATACAAACGAAGGATTA+AGG 0.188999 8_4:-30831956 None:intergenic
TTCCCAGCGAGCACCATATT+TGG 0.202241 8_4:-30827698 None:intergenic
TCTAATGGGGTTGGCTTTCA+TGG 0.295756 8_4:+30831846 Msa1323060:three_prime_UTR
AATAAGGAGTTATGGTCTAA+TGG 0.313535 8_4:+30831831 Msa1323060:three_prime_UTR
CCCTTAATCCTTCGTTTGTA+TGG 0.334172 8_4:+30831955 Msa1323060:three_prime_UTR
TTATGTGTGATGCAAATAAA+TGG 0.335824 8_4:+30831990 Msa1323060:three_prime_UTR
GTCATAAAGACATTTGAATA+AGG 0.339831 8_4:+30831815 Msa1323060:three_prime_UTR
ATAAGGAGTTATGGTCTAAT+GGG 0.352015 8_4:+30831832 Msa1323060:three_prime_UTR
AAAATTACTTACAAGCTGTT+TGG 0.370047 8_4:+30831587 Msa1323060:CDS
CCATACAAACGAAGGATTAA+GGG 0.380337 8_4:-30831955 None:intergenic
GACATTTGAATAAGGAGTTA+TGG 0.399837 8_4:+30831823 Msa1323060:three_prime_UTR
GGGAAACTTATCACCGAACT+TGG 0.404349 8_4:+30827716 Msa1323060:CDS
CACAAACTTTGTGCACTTCG+TGG 0.405990 8_4:-30827787 None:intergenic
ATGGAAGTTCTGCTGTTAGA+TGG 0.407851 8_4:+30831669 Msa1323060:CDS
AGGAAGTCCATCCAGCCATT+TGG 0.420702 8_4:-30831731 None:intergenic
TGGAGATATTGAAAACTATA+AGG 0.439418 8_4:+30831610 Msa1323060:CDS
ATCTTCACCTTCATGAAGCT+TGG 0.441586 8_4:-30827825 None:intergenic
AAACACTGGACTTATGTCAT+AGG 0.470664 8_4:+30827869 Msa1323060:CDS
AGGTGATTTGATCCCAAGTT+CGG 0.474155 8_4:-30827729 None:intergenic
AGGTGAAGATTGGCATCAAA+AGG 0.482747 8_4:+30827838 Msa1323060:CDS
ATTACTTACAAGCTGTTTGG+TGG 0.484942 8_4:+30831590 Msa1323060:CDS
TTTCCAAATATGGTGCTCGC+TGG 0.484997 8_4:+30827695 Msa1323060:exon
CTAGTGTGATGTTTGTATAA+TGG 0.492641 8_4:+30831904 Msa1323060:three_prime_UTR
AGCTTCATGAAGGTGAAGAT+TGG 0.494334 8_4:+30827828 Msa1323060:CDS
TTCCAAATATGGTGCTCGCT+GGG 0.503897 8_4:+30827696 Msa1323060:exon
TCATCTTGTCAAAGGGGAAA+AGG 0.504175 8_4:+30831781 Msa1323060:CDS
AAGAGCACTAGAGATATTGA+TGG 0.505384 8_4:+30831758 Msa1323060:CDS
TTGATGGTCATCTTGTCAAA+GGG 0.506740 8_4:+30831774 Msa1323060:CDS
AGATTGGCATCAAAAGGATT+CGG 0.511486 8_4:+30827844 Msa1323060:CDS
GAGTTATGGTCTAATGGGGT+TGG 0.523965 8_4:+30831837 Msa1323060:three_prime_UTR
ATGTTCTCTTTATGATATGA+TGG 0.525272 8_4:-30827618 None:intergenic
ATTGATGGTCATCTTGTCAA+AGG 0.543582 8_4:+30831773 Msa1323060:CDS
TATCTCTAGTGCTCTTGCTA+AGG 0.564297 8_4:-30831751 None:intergenic
ATGTTGATACTCCAAATGGC+TGG 0.578150 8_4:+30831720 Msa1323060:CDS
GAAGTGCTTAACAAGGCTGA+TGG 0.580204 8_4:+30831650 Msa1323060:CDS
GAACTTGGGATCAAATCACC+TGG 0.582815 8_4:+30827731 Msa1323060:CDS
CATCATGCCAAGCTTCATGA+AGG 0.583004 8_4:+30827818 Msa1323060:CDS
AACTTGGGATCAAATCACCT+GGG 0.586332 8_4:+30827732 Msa1323060:CDS
TGATACTCCAAATGGCTGGA+TGG 0.587093 8_4:+30831724 Msa1323060:CDS
AAAAGGATTCGGTTAAACAC+TGG 0.591334 8_4:+30827855 Msa1323060:CDS
CATTTATTCCATACAAACGA+AGG 0.591362 8_4:-30831963 None:intergenic
GAGGATGTTGATACTCCAAA+TGG 0.593330 8_4:+30831716 Msa1323060:CDS
GGAAACTTATCACCGAACTT+GGG 0.601665 8_4:+30827717 Msa1323060:CDS
GGTACACACAAGCAATAAGA+AGG 0.608553 8_4:+30831538 Msa1323060:CDS
AGTTTGAAGAACTTCTCCCC+AGG 0.610513 8_4:-30827749 None:intergenic
TAAGGAGTTATGGTCTAATG+GGG 0.625990 8_4:+30831833 Msa1323060:three_prime_UTR
CATCTTAGAAGTGCTTAACA+AGG 0.644958 8_4:+30831643 Msa1323060:CDS
TGACATAACAACAGATGGTG+AGG 0.646920 8_4:+30831517 Msa1323060:intron
TGATGGTCATCTTGTCAAAG+GGG 0.652198 8_4:+30831775 Msa1323060:CDS
TGATTATGAGAAGAACAATG+AGG 0.694185 8_4:+30831697 Msa1323060:CDS
ACTTGGGATCAAATCACCTG+GGG 0.718558 8_4:+30827733 Msa1323060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTTATAATATTTAAAA+AGG + chr8_4:30828006-30828025 Msa1323060:intron 0.0%
!! TAATTTATAATATTTAAAAA+GGG + chr8_4:30828007-30828026 Msa1323060:intron 0.0%
!! ATTATAAATTAAGTGATTAT+AGG - chr8_4:30828889-30828908 None:intergenic 10.0%
!!! TTTTAAAAAATTCTGAAAAT+TGG - chr8_4:30830833-30830852 None:intergenic 10.0%
!! TATAAAAAAAGATATTGATA+AGG - chr8_4:30831112-30831131 None:intergenic 10.0%
!!! ATTTTTTTTTTAAAGCAAAA+AGG + chr8_4:30832056-30832075 Msa1323060:three_prime_UTR 10.0%
!!! TTTTTATTTCTTTCCAAATA+TGG + chr8_4:30827685-30827704 Msa1323060:exon 15.0%
!! GCTAATATAATATTGTAAAT+AGG + chr8_4:30828194-30828213 Msa1323060:intron 15.0%
!!! AAATTGATTTTGAAAGAAAA+TGG + chr8_4:30828596-30828615 Msa1323060:intron 15.0%
!!! TTTAAAAAAACACTTTCTTT+TGG - chr8_4:30828637-30828656 None:intergenic 15.0%
!! GCTTTACTTAAAATAATAAT+AGG + chr8_4:30828942-30828961 Msa1323060:intron 15.0%
!! AAAAAACATCGTTATTAATA+TGG - chr8_4:30829094-30829113 None:intergenic 15.0%
!!! ATAGAAATTCATATTTTTCA+AGG - chr8_4:30829245-30829264 None:intergenic 15.0%
!!! TTTTTTTTTAACTTGTTTAG+TGG - chr8_4:30829268-30829287 None:intergenic 15.0%
!! ACGTTTATTTATTAAATGTA+TGG - chr8_4:30829820-30829839 None:intergenic 15.0%
!! AATTTATATAGCTATTTAAC+CGG + chr8_4:30830293-30830312 Msa1323060:intron 15.0%
!!! GTCTATAAAATTTTTATTGT+TGG - chr8_4:30830394-30830413 None:intergenic 15.0%
!!! TTAAATAGTCTTATACATTA+GGG - chr8_4:30831144-30831163 None:intergenic 15.0%
!!! TTTAAATAGTCTTATACATT+AGG - chr8_4:30831145-30831164 None:intergenic 15.0%
!!! TGTATATGGTTTTATTTTTA+AGG - chr8_4:30831178-30831197 None:intergenic 15.0%
!!! CGTATTTAATATTTTTTTAG+AGG + chr8_4:30831456-30831475 Msa1323060:intron 15.0%
!! AGAAAGAGAAGAAAAAAAAA+AGG - chr8_4:30827644-30827663 None:intergenic 20.0%
!! ATAATATTTAAAAAGGGAAG+AGG + chr8_4:30828013-30828032 Msa1323060:intron 20.0%
!! TTAAACATAACTCTTCATTA+TGG - chr8_4:30828268-30828287 None:intergenic 20.0%
!!! AACTAGTTTATTTTCTAGAT+AGG - chr8_4:30828404-30828423 None:intergenic 20.0%
!!! ATCAATTTTTTTTAAGCTCA+AGG - chr8_4:30828584-30828603 None:intergenic 20.0%
!! TATTAATTTATGTATGGTCT+AGG + chr8_4:30829186-30829205 Msa1323060:intron 20.0%
!! ATTAATTTATGTATGGTCTA+GGG + chr8_4:30829187-30829206 Msa1323060:intron 20.0%
!!! CAAAAATATTTGGTTTTTTG+CGG - chr8_4:30829598-30829617 None:intergenic 20.0%
!!! TAATATTTACTTTTACGGTT+TGG - chr8_4:30829694-30829713 None:intergenic 20.0%
!!! TGACTATTCTAAAAATTAGT+CGG - chr8_4:30829885-30829904 None:intergenic 20.0%
!! TTCGAAATAAAAATCACATA+CGG - chr8_4:30829924-30829943 None:intergenic 20.0%
!!! ATTGTGATTTTATAACTTCA+AGG - chr8_4:30830107-30830126 None:intergenic 20.0%
!!! CTATTATTATTTCTTAAACC+TGG - chr8_4:30830651-30830670 None:intergenic 20.0%
!! TTAAAAAATAATTGGAAGTG+CGG + chr8_4:30830847-30830866 Msa1323060:intron 20.0%
!! TGCATATAAGAATATGTATA+TGG - chr8_4:30831192-30831211 None:intergenic 20.0%
!! AAATTAGTTGTACTAGAAAT+GGG - chr8_4:30831237-30831256 None:intergenic 20.0%
!!! TATTAAATACGTTTTCTCAA+AGG - chr8_4:30831447-30831466 None:intergenic 20.0%
! ATGTTCTCTTTATGATATGA+TGG - chr8_4:30827621-30827640 None:intergenic 25.0%
! TACATATGTAAAACGAATTG+AGG - chr8_4:30828104-30828123 None:intergenic 25.0%
!!! TTCTTTTGGACCATTTTTTT+GGG - chr8_4:30828623-30828642 None:intergenic 25.0%
!!! TTTCTTTTGGACCATTTTTT+TGG - chr8_4:30828624-30828643 None:intergenic 25.0%
! TTAACATTCTTACTTCTTCT+TGG - chr8_4:30829017-30829036 None:intergenic 25.0%
!!! GATACTTCAATGTTTTGAAT+TGG + chr8_4:30829302-30829321 Msa1323060:intron 25.0%
!!! TGTTTTGAATTGGATATGAT+TGG + chr8_4:30829312-30829331 Msa1323060:intron 25.0%
!!! GTTTTGAATTGGATATGATT+GGG + chr8_4:30829313-30829332 Msa1323060:intron 25.0%
!!! TGTTTTGAATTGGATATGAT+TGG + chr8_4:30829312-30829331 Msa1323060:intron 25.0%
!!! GTTTTGAATTGGATATGATT+GGG + chr8_4:30829313-30829332 Msa1323060:intron 25.0%
!!! TTTGCAGTTTTATTTCAGAT+CGG - chr8_4:30829555-30829574 None:intergenic 25.0%
!! TTTTGCGGTTTTCAATTTTT+TGG - chr8_4:30829583-30829602 None:intergenic 25.0%
!! CGCAAAAAACCAAATATTTT+TGG + chr8_4:30829596-30829615 Msa1323060:intron 25.0%
! CAAACACATCCAAAAATATT+TGG - chr8_4:30829608-30829627 None:intergenic 25.0%
!!! CAAATATTTTTGGATGTGTT+TGG + chr8_4:30829606-30829625 Msa1323060:intron 25.0%
! AAACTATTCAAACTCAACTA+GGG - chr8_4:30829994-30830013 None:intergenic 25.0%
!!! TTGACCATAGTTTTAAAACT+CGG + chr8_4:30830149-30830168 Msa1323060:intron 25.0%
! TTGAAACATACATGATGATA+AGG + chr8_4:30830589-30830608 Msa1323060:intron 25.0%
! TGAAACATACATGATGATAA+GGG + chr8_4:30830590-30830609 Msa1323060:intron 25.0%
! ATTTAACACAAATCTACAAG+TGG + chr8_4:30830744-30830763 Msa1323060:intron 25.0%
! CAAATTAGTTGTACTAGAAA+TGG - chr8_4:30831238-30831257 None:intergenic 25.0%
!! ACTTTTGTAAAAAGTTAACG+AGG + chr8_4:30831384-30831403 Msa1323060:intron 25.0%
! AAAATTACTTACAAGCTGTT+TGG + chr8_4:30831587-30831606 Msa1323060:CDS 25.0%
! TGGAGATATTGAAAACTATA+AGG + chr8_4:30831610-30831629 Msa1323060:CDS 25.0%
! GTCATAAAGACATTTGAATA+AGG + chr8_4:30831815-30831834 Msa1323060:three_prime_UTR 25.0%
! TTATGTGTGATGCAAATAAA+TGG + chr8_4:30831990-30832009 Msa1323060:three_prime_UTR 25.0%
AACATAACTCTTCATTATGG+TGG - chr8_4:30828265-30828284 None:intergenic 30.0%
!!! TTTTGGATGGTTTTTTTGGA+TGG - chr8_4:30828346-30828365 None:intergenic 30.0%
!!! GCTTTTTTGGATGGTTTTTT+TGG - chr8_4:30828350-30828369 None:intergenic 30.0%
!!! AACTTGTGAACTTGCTTTTT+TGG - chr8_4:30828363-30828382 None:intergenic 30.0%
ATTGAAAACACTTTATCGTC+TGG - chr8_4:30828512-30828531 None:intergenic 30.0%
TTAATGTCGAAGTAAGTTCA+AGG - chr8_4:30828553-30828572 None:intergenic 30.0%
AGAAAATGGACCCAAAAAAA+TGG + chr8_4:30828610-30828629 Msa1323060:intron 30.0%
AAAACGTAAACTCGTAAACA+CGG + chr8_4:30828654-30828673 Msa1323060:intron 30.0%
!!! ACTCGTTTTTTTGGTGAAAT+CGG - chr8_4:30828733-30828752 None:intergenic 30.0%
! ACAAGTTAACACTTGATTTG+TGG + chr8_4:30828808-30828827 Msa1323060:intron 30.0%
GGAGACGTATATAATTTACA+AGG + chr8_4:30828920-30828939 Msa1323060:intron 30.0%
! TGAGTTTAACTTAGTTGGTA+GGG + chr8_4:30829150-30829169 Msa1323060:intron 30.0%
AATAAGTAAGTAGGGTGTAT+GGG - chr8_4:30829220-30829239 None:intergenic 30.0%
TCAAGGTGAATAAGTAAGTA+GGG - chr8_4:30829228-30829247 None:intergenic 30.0%
TTCAAGGTGAATAAGTAAGT+AGG - chr8_4:30829229-30829248 None:intergenic 30.0%
!! GTTGTTTTGTAAAAACCGTT+AGG + chr8_4:30829631-30829650 Msa1323060:intron 30.0%
TTTGTAAAAACCGTTAGGAT+CGG + chr8_4:30829636-30829655 Msa1323060:intron 30.0%
!!! TTTACTTTTACGGTTTGGTT+CGG - chr8_4:30829689-30829708 None:intergenic 30.0%
GAAACTATTCAAACTCAACT+AGG - chr8_4:30829995-30830014 None:intergenic 30.0%
GCTATTTAACCGGATTAAAT+CGG + chr8_4:30830303-30830322 Msa1323060:intron 30.0%
AAAATTGAGTTATGACCTAG+TGG + chr8_4:30830450-30830469 Msa1323060:intron 30.0%
!! TCAAAATAAAAAAGTGCTCC+AGG + chr8_4:30830630-30830649 Msa1323060:intron 30.0%
TGTACTAGAAATGGGTATAT+TGG - chr8_4:30831229-30831248 None:intergenic 30.0%
! CTAGTACAACTAATTTGTCT+TGG + chr8_4:30831241-30831260 Msa1323060:intron 30.0%
! GCAAGTAAAAAGAAAAGTGT+TGG - chr8_4:30831350-30831369 None:intergenic 30.0%
TGATTATGAGAAGAACAATG+AGG + chr8_4:30831697-30831716 Msa1323060:CDS 30.0%
GACATTTGAATAAGGAGTTA+TGG + chr8_4:30831823-30831842 Msa1323060:three_prime_UTR 30.0%
AATAAGGAGTTATGGTCTAA+TGG + chr8_4:30831831-30831850 Msa1323060:three_prime_UTR 30.0%
ATAAGGAGTTATGGTCTAAT+GGG + chr8_4:30831832-30831851 Msa1323060:three_prime_UTR 30.0%
CTAGTGTGATGTTTGTATAA+TGG + chr8_4:30831904-30831923 Msa1323060:three_prime_UTR 30.0%
CATTTATTCCATACAAACGA+AGG - chr8_4:30831966-30831985 None:intergenic 30.0%
AGATTGGCATCAAAAGGATT+CGG + chr8_4:30827844-30827863 Msa1323060:CDS 35.0%
! AAAAGGATTCGGTTAAACAC+TGG + chr8_4:30827855-30827874 Msa1323060:CDS 35.0%
AAACACTGGACTTATGTCAT+AGG + chr8_4:30827869-30827888 Msa1323060:CDS 35.0%
CACTAGATAAGATCACGTTA+TGG + chr8_4:30828044-30828063 Msa1323060:intron 35.0%
CGAGTTGTAAAACCTTACTT+GGG - chr8_4:30828073-30828092 None:intergenic 35.0%
! TCGAGTTGTAAAACCTTACT+TGG - chr8_4:30828074-30828093 None:intergenic 35.0%
!!! TGTGAACTTGCTTTTTTGGA+TGG - chr8_4:30828359-30828378 None:intergenic 35.0%
GGAGTAGAATTTGATGAAGT+GGG - chr8_4:30828491-30828510 None:intergenic 35.0%
TGGAGTAGAATTTGATGAAG+TGG - chr8_4:30828492-30828511 None:intergenic 35.0%
GTAAGTTCAAGGCATGTATT+TGG - chr8_4:30828542-30828561 None:intergenic 35.0%
AGTTAACACGTGTTAAACTC+GGG - chr8_4:30828689-30828708 None:intergenic 35.0%
GAGTTAACACGTGTTAAACT+CGG - chr8_4:30828690-30828709 None:intergenic 35.0%
GAGTTTAACACGTGTTAACT+CGG + chr8_4:30828689-30828708 Msa1323060:intron 35.0%
!!! CGAAGGTAAACTCGTTTTTT+TGG - chr8_4:30828742-30828761 None:intergenic 35.0%
TCAAAAACGTGTTAACTCGA+AGG - chr8_4:30828759-30828778 None:intergenic 35.0%
!! TTATAGGTTCTAAACCCAGA+GGG - chr8_4:30828873-30828892 None:intergenic 35.0%
!! ATTATAGGTTCTAAACCCAG+AGG - chr8_4:30828874-30828893 None:intergenic 35.0%
ACATTCTTACTTCTTCTTGG+TGG - chr8_4:30829014-30829033 None:intergenic 35.0%
! CTCTGTGAGTTTAACTTAGT+TGG + chr8_4:30829145-30829164 Msa1323060:intron 35.0%
! GTGAGTTTAACTTAGTTGGT+AGG + chr8_4:30829149-30829168 Msa1323060:intron 35.0%
ATAAGTAAGTAGGGTGTATG+GGG - chr8_4:30829219-30829238 None:intergenic 35.0%
GAATAAGTAAGTAGGGTGTA+TGG - chr8_4:30829221-30829240 None:intergenic 35.0%
TTGGATATGATTGGGAGTTT+AGG + chr8_4:30829321-30829340 Msa1323060:intron 35.0%
GAGTTTAGGTGTATCTTGAA+GGG + chr8_4:30829335-30829354 Msa1323060:intron 35.0%
!! GTACTCTAAAATTTCACTGC+TGG + chr8_4:30829368-30829387 Msa1323060:intron 35.0%
TTGGATATGATTGGGAGTTT+AGG + chr8_4:30829321-30829340 Msa1323060:intron 35.0%
GAGTTTAGGTGTATCTTGAA+GGG + chr8_4:30829335-30829354 Msa1323060:intron 35.0%
!! GTACTCTAAAATTTCACTGC+TGG + chr8_4:30829368-30829387 Msa1323060:intron 35.0%
! TTCAACATGGGTTGAGTTTA+GGG + chr8_4:30829514-30829533 Msa1323060:intron 35.0%
AAATCACATACGGATCAGTT+CGG - chr8_4:30829914-30829933 None:intergenic 35.0%
AAAACTATGGTCAAGATGTG+AGG - chr8_4:30830143-30830162 None:intergenic 35.0%
!!! CATAGTTTTAAAACTCGGCT+CGG + chr8_4:30830154-30830173 Msa1323060:intron 35.0%
ATGACTAAATCGGATCAACT+CGG + chr8_4:30830246-30830265 Msa1323060:intron 35.0%
ATCAACTCGGTTAGATAACT+CGG + chr8_4:30830259-30830278 Msa1323060:intron 35.0%
CGATTCAATCCGATTTAATC+CGG - chr8_4:30830315-30830334 None:intergenic 35.0%
CGGATTAAATCGGATTGAAT+CGG + chr8_4:30830313-30830332 Msa1323060:intron 35.0%
CTATGACTACAAAAACCACT+AGG - chr8_4:30830468-30830487 None:intergenic 35.0%
! AGTGGTTTTTGTAGTCATAG+TGG + chr8_4:30830468-30830487 Msa1323060:intron 35.0%
TAATTCCCTTGCTTAGTTGT+TGG + chr8_4:30830783-30830802 Msa1323060:intron 35.0%
! TTCTGAAAATTGGCATGAGT+GGG - chr8_4:30830823-30830842 None:intergenic 35.0%
! ATTCTGAAAATTGGCATGAG+TGG - chr8_4:30830824-30830843 None:intergenic 35.0%
!!! ATAGTTTTAAAAACCGCGAC+CGG - chr8_4:30831018-30831037 None:intergenic 35.0%
ATTACTTACAAGCTGTTTGG+TGG + chr8_4:30831590-30831609 Msa1323060:CDS 35.0%
!! CATCTTAGAAGTGCTTAACA+AGG + chr8_4:30831643-30831662 Msa1323060:CDS 35.0%
!! AAGAGCACTAGAGATATTGA+TGG + chr8_4:30831758-30831777 Msa1323060:CDS 35.0%
! ATTGATGGTCATCTTGTCAA+AGG + chr8_4:30831773-30831792 Msa1323060:CDS 35.0%
! TTGATGGTCATCTTGTCAAA+GGG + chr8_4:30831774-30831793 Msa1323060:CDS 35.0%
TAAGGAGTTATGGTCTAATG+GGG + chr8_4:30831833-30831852 Msa1323060:three_prime_UTR 35.0%
CCATACAAACGAAGGATTAA+GGG - chr8_4:30831958-30831977 None:intergenic 35.0%
TCCATACAAACGAAGGATTA+AGG - chr8_4:30831959-30831978 None:intergenic 35.0%
GGAAACTTATCACCGAACTT+GGG + chr8_4:30827717-30827736 Msa1323060:CDS 40.0%
AGGTGATTTGATCCCAAGTT+CGG - chr8_4:30827732-30827751 None:intergenic 40.0%
AACTTGGGATCAAATCACCT+GGG + chr8_4:30827732-30827751 Msa1323060:CDS 40.0%
ATCTTCACCTTCATGAAGCT+TGG - chr8_4:30827828-30827847 None:intergenic 40.0%
AGCTTCATGAAGGTGAAGAT+TGG + chr8_4:30827828-30827847 Msa1323060:CDS 40.0%
AGGTGAAGATTGGCATCAAA+AGG + chr8_4:30827838-30827857 Msa1323060:CDS 40.0%
!! GACTCTGATGGGTTAAACTT+GGG - chr8_4:30828843-30828862 None:intergenic 40.0%
!! TGACTCTGATGGGTTAAACT+TGG - chr8_4:30828844-30828863 None:intergenic 40.0%
GGAGTTTAGGTGTATCTTGA+AGG + chr8_4:30829334-30829353 Msa1323060:intron 40.0%
!! CTGCTGGTGATGTTTTGAAT+TGG + chr8_4:30829384-30829403 Msa1323060:intron 40.0%
GGAGTTTAGGTGTATCTTGA+AGG + chr8_4:30829334-30829353 Msa1323060:intron 40.0%
CTCTTGTCTGAGTTCAACAT+GGG + chr8_4:30829502-30829521 Msa1323060:intron 40.0%
! GTTCAACATGGGTTGAGTTT+AGG + chr8_4:30829513-30829532 Msa1323060:intron 40.0%
GAAATTCGATCCGATCCTAA+CGG - chr8_4:30829649-30829668 None:intergenic 40.0%
! CAAAACCGATTCAAACCACA+TGG + chr8_4:30829962-30829981 Msa1323060:intron 40.0%
!!! CGAGCCGAGTTTTAAAACTA+TGG - chr8_4:30830156-30830175 None:intergenic 40.0%
GTTGATCCGATTTAGTCATG+CGG - chr8_4:30830245-30830264 None:intergenic 40.0%
CAAATCTACAAGTGGTGTAG+TGG + chr8_4:30830752-30830771 Msa1323060:intron 40.0%
! ATAATTGGAAGTGCGGTCAA+AGG + chr8_4:30830854-30830873 Msa1323060:intron 40.0%
!! AAAGTGTTGGAGCAACAAAG+TGG - chr8_4:30831337-30831356 None:intergenic 40.0%
ACCATCTGTTGTTATGTCAG+AGG - chr8_4:30831516-30831535 None:intergenic 40.0%
TGACATAACAACAGATGGTG+AGG + chr8_4:30831517-30831536 Msa1323060:intron 40.0%
GGTACACACAAGCAATAAGA+AGG + chr8_4:30831538-30831557 Msa1323060:CDS 40.0%
ATGGAAGTTCTGCTGTTAGA+TGG + chr8_4:30831669-30831688 Msa1323060:CDS 40.0%
GAGGATGTTGATACTCCAAA+TGG + chr8_4:30831716-30831735 Msa1323060:CDS 40.0%
ATGTTGATACTCCAAATGGC+TGG + chr8_4:30831720-30831739 Msa1323060:CDS 40.0%
TATCTCTAGTGCTCTTGCTA+AGG - chr8_4:30831754-30831773 None:intergenic 40.0%
TGATGGTCATCTTGTCAAAG+GGG + chr8_4:30831775-30831794 Msa1323060:CDS 40.0%
TCATCTTGTCAAAGGGGAAA+AGG + chr8_4:30831781-30831800 Msa1323060:CDS 40.0%
CCCTTAATCCTTCGTTTGTA+TGG + chr8_4:30831955-30831974 Msa1323060:three_prime_UTR 40.0%
TTTCCAAATATGGTGCTCGC+TGG + chr8_4:30827695-30827714 Msa1323060:exon 45.0%
TTCCAAATATGGTGCTCGCT+GGG + chr8_4:30827696-30827715 Msa1323060:exon 45.0%
GGGAAACTTATCACCGAACT+TGG + chr8_4:30827716-30827735 Msa1323060:CDS 45.0%
GAACTTGGGATCAAATCACC+TGG + chr8_4:30827731-30827750 Msa1323060:CDS 45.0%
ACTTGGGATCAAATCACCTG+GGG + chr8_4:30827733-30827752 Msa1323060:CDS 45.0%
AGTTTGAAGAACTTCTCCCC+AGG - chr8_4:30827752-30827771 None:intergenic 45.0%
CACAAACTTTGTGCACTTCG+TGG - chr8_4:30827790-30827809 None:intergenic 45.0%
CATCATGCCAAGCTTCATGA+AGG + chr8_4:30827818-30827837 Msa1323060:CDS 45.0%
ACGTTATGGAGTCCCAAGTA+AGG + chr8_4:30828058-30828077 Msa1323060:intron 45.0%
AGGGTTTGTCTGACTCTGAT+GGG - chr8_4:30828854-30828873 None:intergenic 45.0%
GCTCTTGTCTGAGTTCAACA+TGG + chr8_4:30829501-30829520 Msa1323060:intron 45.0%
ACATACGGATCAGTTCGGTT+TGG - chr8_4:30829909-30829928 None:intergenic 45.0%
GTTCGCCATGTGGTTTGAAT+CGG - chr8_4:30829970-30829989 None:intergenic 45.0%
TGGGTCAATGGTTGAACCAT+TGG + chr8_4:30830206-30830225 Msa1323060:intron 45.0%
GGGTCAATGGTTGAACCATT+GGG + chr8_4:30830207-30830226 Msa1323060:intron 45.0%
TGGTTGAACCATTGGGTCAT+TGG + chr8_4:30830214-30830233 Msa1323060:intron 45.0%
GTCGAACCGCATGACTAAAT+CGG + chr8_4:30830236-30830255 Msa1323060:intron 45.0%
ATCGGATTGAATCGGTGACT+CGG + chr8_4:30830321-30830340 Msa1323060:intron 45.0%
CATGAGTGGGATTTGAACAC+GGG - chr8_4:30830810-30830829 None:intergenic 45.0%
GCATGAGTGGGATTTGAACA+CGG - chr8_4:30830811-30830830 None:intergenic 45.0%
GATCGGCTATGCAGTTAAAC+CGG - chr8_4:30830951-30830970 None:intergenic 45.0%
GTTCGGTCTGTATGTTGGAT+CGG - chr8_4:30830968-30830987 None:intergenic 45.0%
ATCCAACATACAGACCGAAC+CGG + chr8_4:30830968-30830987 Msa1323060:intron 45.0%
AACCGGTATAGTATCCGGTT+CGG - chr8_4:30830985-30831004 None:intergenic 45.0%
GCCTCTGACATAACAACAGA+TGG + chr8_4:30831512-30831531 Msa1323060:intron 45.0%
! GAAGTGCTTAACAAGGCTGA+TGG + chr8_4:30831650-30831669 Msa1323060:CDS 45.0%
TGATACTCCAAATGGCTGGA+TGG + chr8_4:30831724-30831743 Msa1323060:CDS 45.0%
GAGTTATGGTCTAATGGGGT+TGG + chr8_4:30831837-30831856 Msa1323060:three_prime_UTR 45.0%
!! TCTAATGGGGTTGGCTTTCA+TGG + chr8_4:30831846-30831865 Msa1323060:three_prime_UTR 45.0%
!! TAATTTATAATATTTAGAAA+AGG + chr8_4:30828898-30828917 Msa1323060:intron 5.0%
!! AATTTATAATATTTAGAAAA+GGG + chr8_4:30828899-30828918 Msa1323060:intron 5.0%
!! ATAATTTATTAATTTATGTA+TGG + chr8_4:30829180-30829199 Msa1323060:intron 5.0%
!!! ATTATTAATATTTACTTTTA+CGG - chr8_4:30829699-30829718 None:intergenic 5.0%
!!! TTTTTTTTTGTTTTTTTAAT+GGG - chr8_4:30830028-30830047 None:intergenic 5.0%
!!! TTTTTTTTTTGTTTTTTTAA+TGG - chr8_4:30830029-30830048 None:intergenic 5.0%
!!! AGAATTTTTTAAAAAATAAT+TGG + chr8_4:30830839-30830858 Msa1323060:intron 5.0%
TTCCCAGCGAGCACCATATT+TGG - chr8_4:30827701-30827720 None:intergenic 50.0%
GAGGGTTTGTCTGACTCTGA+TGG - chr8_4:30828855-30828874 None:intergenic 50.0%
TCAGAGTCAGACAAACCCTC+TGG + chr8_4:30828855-30828874 Msa1323060:intron 50.0%
CAGAGTCAGACAAACCCTCT+GGG + chr8_4:30828856-30828875 Msa1323060:intron 50.0%
GTACTGAGTCACTGGGTCAA+TGG + chr8_4:30830194-30830213 Msa1323060:intron 50.0%
CGGGACCAACAACTAAGCAA+GGG - chr8_4:30830791-30830810 None:intergenic 50.0%
ACGGGACCAACAACTAAGCA+AGG - chr8_4:30830792-30830811 None:intergenic 50.0%
! ATTGGAAGTGCGGTCAAAGG+CGG + chr8_4:30830857-30830876 Msa1323060:intron 50.0%
!! ACAAACCCGCCGGTTTATAC+CGG + chr8_4:30830899-30830918 Msa1323060:intron 50.0%
!! ATCCGGTTCGGTCTGTATGT+TGG - chr8_4:30830973-30830992 None:intergenic 50.0%
GACCGAACCGGATACTATAC+CGG + chr8_4:30830980-30830999 Msa1323060:intron 50.0%
!! ATACTATACCGGTTCCCGGT+TGG + chr8_4:30830991-30831010 Msa1323060:intron 50.0%
AGGAAGTCCATCCAGCCATT+TGG - chr8_4:30831734-30831753 None:intergenic 50.0%
! CAACTAGGGTGTTCGCCATG+TGG - chr8_4:30829980-30829999 None:intergenic 55.0%
!! ACTCGGCTCGGACATTGACT+CGG + chr8_4:30830166-30830185 Msa1323060:intron 55.0%
CGGTTCGACCAATGACCCAA+TGG - chr8_4:30830225-30830244 None:intergenic 55.0%
! TTGGAAGTGCGGTCAAAGGC+GGG + chr8_4:30830858-30830877 Msa1323060:intron 55.0%
!! CAAACCCGCCGGTTTATACC+GGG + chr8_4:30830900-30830919 Msa1323060:intron 55.0%
CAAACCCGGTATAAACCGGC+GGG - chr8_4:30830907-30830926 None:intergenic 55.0%
CCAAACCCGGTATAAACCGG+CGG - chr8_4:30830908-30830927 None:intergenic 55.0%
CGGCCAAACCCGGTATAAAC+CGG - chr8_4:30830911-30830930 None:intergenic 55.0%
CGGTTTATACCGGGTTTGGC+CGG + chr8_4:30830909-30830928 Msa1323060:intron 55.0%
GTTAAACCGGTGCGAACCGA+TGG - chr8_4:30830938-30830957 None:intergenic 55.0%
CCGGGAACCGGTATAGTATC+CGG - chr8_4:30830990-30831009 None:intergenic 55.0%
!! CCGGATACTATACCGGTTCC+CGG + chr8_4:30830987-30831006 Msa1323060:intron 55.0%
!! GCTCGGACATTGACTCGGCT+GGG + chr8_4:30830171-30830190 Msa1323060:intron 60.0%
!! CTCGGACATTGACTCGGCTG+GGG + chr8_4:30830172-30830191 Msa1323060:intron 60.0%
!! GGCTGGGGTACTGAGTCACT+GGG + chr8_4:30830187-30830206 Msa1323060:intron 60.0%
! ACCGGCGGGTTTGTGCAAAC+CGG - chr8_4:30830893-30830912 None:intergenic 60.0%
!! CCGCCGGTTTATACCGGGTT+TGG + chr8_4:30830905-30830924 Msa1323060:intron 60.0%
CGATGGAAACCGGCCAAACC+CGG - chr8_4:30830921-30830940 None:intergenic 60.0%
! CGGGTTTGGCCGGTTTCCAT+CGG + chr8_4:30830919-30830938 Msa1323060:intron 60.0%
CGGTGCGAACCGATGGAAAC+CGG - chr8_4:30830931-30830950 None:intergenic 60.0%
!! CGGTTTCCATCGGTTCGCAC+CGG + chr8_4:30830929-30830948 Msa1323060:intron 60.0%
!! ATACCGGTTCCCGGTTGGAC+CGG + chr8_4:30830996-30831015 Msa1323060:intron 60.0%
AAAACCGCGACCGGTCCAAC+CGG - chr8_4:30831009-30831028 None:intergenic 60.0%
!! GGCTCGGACATTGACTCGGC+TGG + chr8_4:30830170-30830189 Msa1323060:intron 65.0%
!! CGGCTGGGGTACTGAGTCAC+TGG + chr8_4:30830186-30830205 Msa1323060:intron 65.0%
!! CAAAGGCGGGTTGACTCGCC+CGG + chr8_4:30830871-30830890 Msa1323060:intron 65.0%
! CCGGCGGGTTTGTGCAAACC+GGG - chr8_4:30830892-30830911 None:intergenic 65.0%
! CCCGGTTTGCACAAACCCGC+CGG + chr8_4:30830889-30830908 Msa1323060:intron 65.0%
AAACCGCGACCGGTCCAACC+GGG - chr8_4:30831008-30831027 None:intergenic 65.0%
CGACCGGTCCAACCGGGAAC+CGG - chr8_4:30831002-30831021 None:intergenic 70.0%
GTTCCCGGTTGGACCGGTCG+CGG + chr8_4:30831002-30831021 Msa1323060:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 30827607 30832087 30827607 ID=Msa1323060;Name=Msa1323060
chr8_4 mRNA 30827607 30832087 30827607 ID=Msa1323060-mRNA-1;Parent=Msa1323060;Name=Msa1323060-mRNA-1;_AED=0.24;_eAED=0.24;_QI=97|1|1|1|1|1|2|273|156
chr8_4 exon 30827607 30827890 30827607 ID=Msa1323060-mRNA-1:exon:10161;Parent=Msa1323060-mRNA-1
chr8_4 exon 30831531 30832087 30831531 ID=Msa1323060-mRNA-1:exon:10162;Parent=Msa1323060-mRNA-1
chr8_4 five_prime_UTR 30827607 30827703 30827607 ID=Msa1323060-mRNA-1:five_prime_utr;Parent=Msa1323060-mRNA-1
chr8_4 CDS 30827704 30827890 30827704 ID=Msa1323060-mRNA-1:cds;Parent=Msa1323060-mRNA-1
chr8_4 CDS 30831531 30831814 30831531 ID=Msa1323060-mRNA-1:cds;Parent=Msa1323060-mRNA-1
chr8_4 three_prime_UTR 30831815 30832087 30831815 ID=Msa1323060-mRNA-1:three_prime_utr;Parent=Msa1323060-mRNA-1
Gene Sequence

>Msa1323060

ATGGTGCTCGCTGGGAAACTTATCACCGAACTTGGGATCAAATCACCTGGGGAGAAGTTCTTCAAACTATTTTCATCAGAACTCCACGAAGTGCACAAAGTTTGTGAAAGAGTTCATCATGCCAAGCTTCATGAAGGTGAAGATTGGCATCAAAAGGATTCGGTTAAACACTGGACTTATGTCATAGATGGTGAGGTACACACAAGCAATAAGAAGGTTGAAGAAGTTGATGAGCAAAACAAAAAAATTACTTACAAGCTGTTTGGTGGAGATATTGAAAACTATAAGGTCTTTAAGCTCATCTTAGAAGTGCTTAACAAGGCTGATGGAAGTTCTGCTGTTAGATGGACTATTGATTATGAGAAGAACAATGAGGATGTTGATACTCCAAATGGCTGGATGGACTTCCTTAGCAAGAGCACTAGAGATATTGATGGTCATCTTGTCAAAGGGGAAAAGGTAGCTCTATAA

Protein sequence

>Msa1323060

MVLAGKLITELGIKSPGEKFFKLFSSELHEVHKVCERVHHAKLHEGEDWHQKDSVKHWTYVIDGEVHTSNKKVEEVDEQNKKITYKLFGGDIENYKVFKLILEVLNKADGSSAVRWTIDYEKNNEDVDTPNGWMDFLSKSTRDIDGHLVKGEKVAL*