AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0132180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132180 MtrunA17_Chr1g0201261 96.282 511 19 0 1 511 1 511 0.0 999
Msa0132180 MtrunA17_Chr2g0293821 32.683 205 130 5 275 476 158 357 1.91e-23 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132180 AT1G71720.1 57.948 497 162 10 26 510 37 498 0.0 536
Msa0132180 AT1G71720.2 58.216 426 135 7 26 442 37 428 4.84e-159 459
Msa0132180 AT5G30510.1 33.659 205 127 5 275 476 165 363 3.30e-26 111

Find 115 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGTTGGTGTTGTTGTTTC+AGG 0.166896 1_3:+63173465 Msa0132180:CDS
GGCCATACAGAGAGTATTTA+TGG 0.204207 1_3:+63176700 Msa0132180:intron
CCTATTGTCTCTACAAAATT+AGG 0.227064 1_3:+63176767 Msa0132180:CDS
CATTGTTCTCTTATGTTGTT+TGG 0.231036 1_3:+63177030 Msa0132180:three_prime_UTR
ACATCATTTAACGACTTAAA+AGG 0.260605 1_3:-63177311 None:intergenic
GCAATAAGAAAGAAATTTAA+AGG 0.277964 1_3:-63177127 None:intergenic
CTATAATATGACACCTAAAA+TGG 0.279673 1_3:-63177176 None:intergenic
GAACAAGCCTTCACCTGTTC+TGG 0.287032 1_3:+63173200 Msa0132180:CDS
AGGAGTGGAAAGAACAATAT+TGG 0.289687 1_3:-63173037 None:intergenic
ACTGAACAAAGCATTATCTT+TGG 0.305171 1_3:-63172897 None:intergenic
AGCATGGGCTATAAAGTATT+TGG 0.307708 1_3:+63177063 Msa0132180:three_prime_UTR
GGATGAAGTTGAAGAATAAA+TGG 0.339304 1_3:-63172937 None:intergenic
GTTTCTACAACAGGCCTTCC+TGG 0.339830 1_3:-63173681 None:intergenic
CCCTTGAACCGTAAAATTCT+CGG 0.349446 1_3:-63173610 None:intergenic
GACCGTTGATTTCTACTAGA+AGG 0.354808 1_3:+63173751 Msa0132180:CDS
GATAGTGCAAGACGCTTCTC+TGG 0.356013 1_3:-63177264 None:intergenic
TCCTTTGAATGGTAAAGAAA+TGG 0.358874 1_3:+63173557 Msa0132180:CDS
GGAAGGCCTGTTGTAGAAAC+TGG 0.360206 1_3:+63173684 Msa0132180:CDS
AGATAATGAGATATTGGAAT+TGG 0.364755 1_3:+63173323 Msa0132180:CDS
ACCACAAAATCACCAGGTTT+TGG 0.365944 1_3:-63173447 None:intergenic
ATCTTAATTTGTGCTCCATA+TGG 0.366503 1_3:-63175092 None:intergenic
GGCTCTTTCGTCGGATTGCT+TGG 0.369347 1_3:+63173772 Msa0132180:CDS
TGAAGAAGATAATGAGATAT+TGG 0.372506 1_3:+63173317 Msa0132180:CDS
TCTTGTCACAAGCTCAGCTT+TGG 0.373548 1_3:-63174661 None:intergenic
ATTGTTCTCTTATGTTGTTT+GGG 0.380653 1_3:+63177031 Msa0132180:three_prime_UTR
TAAAACCTCAGCAAACAAAA+TGG 0.381979 1_3:-63173709 None:intergenic
TATAGATAGATTCATATAGT+TGG 0.389674 1_3:+63177194 Msa0132180:three_prime_UTR
ATGAAGCACTTTATGCAAAC+TGG 0.389809 1_3:+63176822 Msa0132180:CDS
AACTTGAATTTCATCATCAA+TGG 0.393250 1_3:-63173169 None:intergenic
CACTTTATGCAAACTGGAAG+TGG 0.420539 1_3:+63176828 Msa0132180:CDS
AAGGAAGTGCTTCCTTTGAA+TGG 0.425729 1_3:+63173546 Msa0132180:CDS
TATGGAGCACAAATTAAGAT+TGG 0.430199 1_3:+63175095 Msa0132180:CDS
ACCTGTTCTGGAAGTTGAGT+TGG 0.430618 1_3:+63173212 Msa0132180:CDS
AAAGTCCAGGTTCACTTTCA+AGG 0.432871 1_3:-63176584 None:intergenic
ATGGTTCCAGTTTCTACAAC+AGG 0.436694 1_3:-63173690 None:intergenic
CTTCATATGTTCTTCTCAAA+CGG 0.440969 1_3:-63176967 None:intergenic
GGAGTGGAAAGAACAATATT+GGG 0.445067 1_3:-63173036 None:intergenic
CAATAAGAAAGAAATTTAAA+GGG 0.445505 1_3:-63177126 None:intergenic
TCCAACTCAACTTCCAGAAC+AGG 0.447639 1_3:-63173213 None:intergenic
TGCTTGGCATCGAGTGAGGC+AGG 0.461627 1_3:+63173788 Msa0132180:CDS
AGAATTACAGAGTGGAATAC+TGG 0.466743 1_3:+63174515 Msa0132180:CDS
CTCCGTTGATGAGAAGGTTA+AGG 0.469591 1_3:+63176203 Msa0132180:CDS
AGGCAAAGCACTAGTTGGTA+AGG 0.471914 1_3:-63176792 None:intergenic
TGCTTAGTGAAAAGCAAGCT+TGG 0.472021 1_3:+63174883 Msa0132180:CDS
GAGGTTTCAAGTGATTTAGC+TGG 0.478592 1_3:+63173141 Msa0132180:CDS
ATTGTTCTTTCCACTCCTCA+TGG 0.483191 1_3:+63173042 Msa0132180:CDS
ACGTGATTACAATTACATCT+TGG 0.483342 1_3:-63177392 None:intergenic
TAAAGTGCTTCATCTTCATA+AGG 0.486317 1_3:-63176812 None:intergenic
TTTACGGTTCAAGGGAAGAT+GGG 0.487575 1_3:+63173618 Msa0132180:CDS
ATTCAAAGGAAGCACTTCCT+TGG 0.487899 1_3:-63173544 None:intergenic
TGATTTCTTGCTGAAAATGA+AGG 0.488495 1_3:-63172992 None:intergenic
CGGCATGTCCGTCATGGGAC+TGG 0.491461 1_3:-63176947 None:intergenic
GCTTAGTGAAAAGCAAGCTT+GGG 0.496512 1_3:+63174884 Msa0132180:CDS
CTTGTCACAAGCTCAGCTTT+GGG 0.498895 1_3:-63174660 None:intergenic
AATCTCAACACTCGAGGTAG+AGG 0.501125 1_3:-63176995 None:intergenic
CTCAAACGGCATGTCCGTCA+TGG 0.502882 1_3:-63176953 None:intergenic
GAGGATGAAGGAAAAGAAGA+AGG 0.503317 1_3:+63173390 Msa0132180:CDS
CTGGTGAGCCATGCAACATA+AGG 0.507604 1_3:-63176928 None:intergenic
ATTTATGGAGGCTGATATGA+TGG 0.513840 1_3:+63176715 Msa0132180:CDS
CTACTAGAAGGCTCTTTCGT+CGG 0.515227 1_3:+63173763 Msa0132180:CDS
GCCGACCTTGAAAGTGAACC+TGG 0.518644 1_3:+63176579 Msa0132180:CDS
GAATAAATGGCATCTTTGTA+TGG 0.523040 1_3:-63172924 None:intergenic
ATGAGTGGAGTATCAGTGCC+AGG 0.523959 1_3:+63173663 Msa0132180:CDS
TCCATTTCTTTACCATTCAA+AGG 0.525558 1_3:-63173558 None:intergenic
TCATAAGGCAAAGCACTAGT+TGG 0.527975 1_3:-63176797 None:intergenic
AGACCTCAATCGTTGTTAGC+AGG 0.530608 1_3:-63174541 None:intergenic
CGTACTCTCCGTTGATGAGA+AGG 0.532205 1_3:+63176197 Msa0132180:CDS
AATGTTGGAGCAGACTTACT+AGG 0.536029 1_3:+63173510 Msa0132180:CDS
AACAAACTTGATGTAAATGT+TGG 0.538687 1_3:+63173495 Msa0132180:CDS
GTTTGGGCACATAAAGAGCA+TGG 0.540106 1_3:+63177047 Msa0132180:three_prime_UTR
TCCAGGTTCACTTTCAAGGT+CGG 0.547661 1_3:-63176580 None:intergenic
TCAAACGGCATGTCCGTCAT+GGG 0.547753 1_3:-63176952 None:intergenic
TCAGAGAACCTTATGTTGCA+TGG 0.549152 1_3:+63176920 Msa0132180:three_prime_UTR
TTTGTAGAGACAATAGGAGG+AGG 0.554599 1_3:-63176761 None:intergenic
TCTGTAATTCTAACCTCGAT+AGG 0.555447 1_3:-63174503 None:intergenic
TTTAGAGCAAAACTTGAAGT+GGG 0.556785 1_3:-63173103 None:intergenic
GGAGTTGCAGTTGAAGCATA+CGG 0.570922 1_3:-63172971 None:intergenic
TAATATGACACCTAAAATGG+AGG 0.574715 1_3:-63177173 None:intergenic
AATATGACACCTAAAATGGA+GGG 0.575844 1_3:-63177172 None:intergenic
ACAAGAGAAGCCTTCTGAAG+AGG 0.577741 1_3:+63173236 Msa0132180:CDS
TCACAAGCTCAGCTTTGGGT+AGG 0.577775 1_3:-63174656 None:intergenic
ATAGTTGGATGTAAATTCTG+AGG 0.578855 1_3:+63177209 Msa0132180:three_prime_UTR
GCTAAAGCTTCCTCTTCAGA+AGG 0.579048 1_3:-63173246 None:intergenic
AACAATTGAACCATGAGGAG+TGG 0.579544 1_3:-63173052 None:intergenic
CTCAACACTCGAGGTAGAGG+AGG 0.581345 1_3:-63176992 None:intergenic
TTTGGGCACATAAAGAGCAT+GGG 0.592315 1_3:+63177048 Msa0132180:three_prime_UTR
GAAAAGGCATATCTTCGTGA+AGG 0.597129 1_3:+63175035 Msa0132180:CDS
CGGCCTGCTAACAACGATTG+AGG 0.597746 1_3:+63174538 Msa0132180:CDS
ATAGTGCAAGACGCTTCTCT+GGG 0.598814 1_3:-63177263 None:intergenic
AATAAGAAAGAAATTTAAAG+GGG 0.600106 1_3:-63177125 None:intergenic
AGCCTTAACCTTCTCATCAA+CGG 0.602910 1_3:-63176205 None:intergenic
GGCAAAGCACTAGTTGGTAA+GGG 0.614969 1_3:-63176791 None:intergenic
AAGCATACGGAAGAGTTACA+AGG 0.616087 1_3:-63172958 None:intergenic
TCAACTTCCAGAACAGGTGA+AGG 0.616927 1_3:-63173207 None:intergenic
GAGTATTATGAGCCAAAACC+TGG 0.617757 1_3:+63173435 Msa0132180:CDS
AGGTTAAGGCTCTTGTTGTG+AGG 0.619077 1_3:+63176217 Msa0132180:CDS
GGATTGCTTGGCATCGAGTG+AGG 0.619176 1_3:+63173784 Msa0132180:CDS
TAGTTGGATGTAAATTCTGA+GGG 0.623285 1_3:+63177210 Msa0132180:three_prime_UTR
ATATGACACCTAAAATGGAG+GGG 0.632609 1_3:-63177171 None:intergenic
AAAAGGCATATCTTCGTGAA+GGG 0.634782 1_3:+63175036 Msa0132180:CDS
AGGTAGTAAAGATTATGTGA+AGG 0.638566 1_3:+63173290 Msa0132180:CDS
ACACCAACCACAAAATCACC+AGG 0.642518 1_3:-63173453 None:intergenic
TTTGTTATGTGATGTGAACA+AGG 0.648082 1_3:+63173584 Msa0132180:CDS
AGCCTTCTAGTAGAAATCAA+CGG 0.649854 1_3:-63173753 None:intergenic
TTAGAAACAATTGAACCATG+AGG 0.654840 1_3:-63173057 None:intergenic
GTGGAGTATCAGTGCCAGGA+AGG 0.655100 1_3:+63173667 Msa0132180:CDS
AAGAATGATGAAGTAATGAG+TGG 0.659184 1_3:+63173648 Msa0132180:CDS
ATGGCTCACCAGTCCCATGA+CGG 0.662600 1_3:+63176939 Msa0132180:three_prime_UTR
ACAGCTCAATGAACCTATCG+AGG 0.680086 1_3:+63174490 Msa0132180:CDS
ACTAGGTACAATGTTAACCA+AGG 0.680430 1_3:+63173527 Msa0132180:CDS
AAAAGATTATGTGAGTGATG+AGG 0.692132 1_3:+63173359 Msa0132180:CDS
CATACAGAGAGTATTTATGG+AGG 0.694319 1_3:+63176703 Msa0132180:intron
TCCCCGATAAAATCTCTCTG+AGG 0.706627 1_3:+63176247 Msa0132180:CDS
ATTACAGAGTGGAATACTGG+CGG 0.713190 1_3:+63174518 Msa0132180:CDS
TCGAGGTTAGAATTACAGAG+TGG 0.742925 1_3:+63174507 Msa0132180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGTTTTAATTGTTAATTT+TGG + chr1_3:63176059-63176078 Msa0132180:intron 10.0%
!! ATACTGAAATTTAGTAAAAA+AGG + chr1_3:63174321-63174340 Msa0132180:intron 15.0%
!!! AAATTGAGTTATATTTTCAA+GGG - chr1_3:63175166-63175185 None:intergenic 15.0%
!!! AAGATTAATGTTTTAAAAAC+CGG + chr1_3:63175516-63175535 Msa0132180:intron 15.0%
!! TTAACAATTAAAACTTATGA+AGG - chr1_3:63176056-63176075 None:intergenic 15.0%
!!! TTGAATTCTTATTCATTTTT+CGG + chr1_3:63176679-63176698 Msa0132180:intron 15.0%
!! AATAAGAAAGAAATTTAAAG+GGG - chr1_3:63177128-63177147 None:intergenic 15.0%
!! CAATAAGAAAGAAATTTAAA+GGG - chr1_3:63177129-63177148 None:intergenic 15.0%
!!! CCTTTGAAAAACTTAAAAAA+AGG - chr1_3:63173273-63173292 None:intergenic 20.0%
!!! CCTTTTTTTAAGTTTTTCAA+AGG + chr1_3:63173270-63173289 Msa0132180:CDS 20.0%
!! TAATAAATGGAGAACAAATA+TGG - chr1_3:63173989-63174008 None:intergenic 20.0%
!! ATAGCTTATATGAAAACAAT+TGG - chr1_3:63174133-63174152 None:intergenic 20.0%
!!! TTTGTCATTTCATATCAAAA+TGG + chr1_3:63174271-63174290 Msa0132180:intron 20.0%
!!! AATCTGATCTTTTTAATGTT+TGG + chr1_3:63174457-63174476 Msa0132180:intron 20.0%
!!! ATCTGATCTTTTTAATGTTT+GGG + chr1_3:63174458-63174477 Msa0132180:intron 20.0%
!!! GTAAAAAAGATTTTTCCATA+TGG + chr1_3:63175077-63175096 Msa0132180:CDS 20.0%
!!! CAAATTGAGTTATATTTTCA+AGG - chr1_3:63175167-63175186 None:intergenic 20.0%
!! ATATAGATAATGAATGCATT+AGG + chr1_3:63175212-63175231 Msa0132180:intron 20.0%
!! TTAACTCTAATGAAATAAAC+TGG + chr1_3:63175324-63175343 Msa0132180:intron 20.0%
!!! ACTTTTTCTTTCAAATAAAG+AGG + chr1_3:63176602-63176621 Msa0132180:CDS 20.0%
!! GCAATAAGAAAGAAATTTAA+AGG - chr1_3:63177130-63177149 None:intergenic 20.0%
!! TATAGATAGATTCATATAGT+TGG + chr1_3:63177194-63177213 Msa0132180:three_prime_UTR 20.0%
!!! TTAAATTTTGAACTTTCACA+GGG - chr1_3:63177371-63177390 None:intergenic 20.0%
!!! ATTAAATTTTGAACTTTCAC+AGG - chr1_3:63177372-63177391 None:intergenic 20.0%
!! ATATCAAAAATTTCAGTGAA+TGG - chr1_3:63177418-63177437 None:intergenic 20.0%
!!! TTCAAGTTTTGCTCTAAAAA+TGG + chr1_3:63173108-63173127 Msa0132180:CDS 25.0%
! AACTTGAATTTCATCATCAA+TGG - chr1_3:63173172-63173191 None:intergenic 25.0%
! TGAAGAAGATAATGAGATAT+TGG + chr1_3:63173317-63173336 Msa0132180:CDS 25.0%
! AGATAATGAGATATTGGAAT+TGG + chr1_3:63173323-63173342 Msa0132180:CDS 25.0%
! AACAAACTTGATGTAAATGT+TGG + chr1_3:63173495-63173514 Msa0132180:CDS 25.0%
! AACATTGGATATGAGTAAAA+AGG - chr1_3:63173833-63173852 None:intergenic 25.0%
!! TATTTAGCAAACAGTAGTTT+TGG + chr1_3:63173942-63173961 Msa0132180:intron 25.0%
! AATTTGGCATTGCTAATAAA+TGG - chr1_3:63174002-63174021 None:intergenic 25.0%
! ATTTATTAGCAATGCCAAAT+TGG + chr1_3:63174001-63174020 Msa0132180:intron 25.0%
! AATTAGCTGAAAATAGCTTA+TGG + chr1_3:63174190-63174209 Msa0132180:intron 25.0%
! TCATTTCATATCAAAATGGT+AGG + chr1_3:63174275-63174294 Msa0132180:intron 25.0%
! AGTGAGCATTTATAAGATAA+TGG - chr1_3:63174379-63174398 None:intergenic 25.0%
! TAATGACATAAATCTAATGC+TGG + chr1_3:63174425-63174444 Msa0132180:intron 25.0%
!! TCTGATCTTTTTAATGTTTG+GGG + chr1_3:63174459-63174478 Msa0132180:intron 25.0%
! AACATAAACTTCAAGTCAAT+GGG - chr1_3:63174569-63174588 None:intergenic 25.0%
! ATTTACTCAAATAATGACAC+AGG - chr1_3:63174592-63174611 None:intergenic 25.0%
!! TGCTTATTTCTTCATGAATT+CGG + chr1_3:63174611-63174630 Msa0132180:intron 25.0%
! AGATGAAGCTAAAAATTCTT+TGG + chr1_3:63174860-63174879 Msa0132180:CDS 25.0%
!!! TCAATTTGAGTTATTTTCGA+TGG + chr1_3:63175179-63175198 Msa0132180:intron 25.0%
!!! TTTCACAATCTTTTGAAGTT+AGG - chr1_3:63175272-63175291 None:intergenic 25.0%
! AGATTGTGAAACTTTGAATT+TGG + chr1_3:63175281-63175300 Msa0132180:intron 25.0%
! AAATTACAGCAGCAAATAAA+TGG - chr1_3:63175395-63175414 None:intergenic 25.0%
! TTGTAGATAAAAAGCAAGTA+GGG - chr1_3:63175760-63175779 None:intergenic 25.0%
!! TTATGCCAAATTTCTCATTT+TGG - chr1_3:63175810-63175829 None:intergenic 25.0%
!! TTGGCATAATTTTATAGCTA+CGG + chr1_3:63175821-63175840 Msa0132180:intron 25.0%
! AGAAAATTATGCAGTAACAA+GGG - chr1_3:63175889-63175908 None:intergenic 25.0%
! AAGAAAATTATGCAGTAACA+AGG - chr1_3:63175890-63175909 None:intergenic 25.0%
!!! TACTATCTTTGTTTCTATCA+TGG + chr1_3:63175910-63175929 Msa0132180:intron 25.0%
!! TAACTTCCTTTTGTAATTGT+TGG + chr1_3:63176287-63176306 Msa0132180:intron 25.0%
!! AACTTCCTTTTGTAATTGTT+GGG + chr1_3:63176288-63176307 Msa0132180:intron 25.0%
! TTGTTTATGTTAACCAAACA+AGG - chr1_3:63176341-63176360 None:intergenic 25.0%
!! AATCAAATTTTGAATCTTGG+AGG - chr1_3:63176427-63176446 None:intergenic 25.0%
!! ACGAATCAAATTTTGAATCT+TGG - chr1_3:63176430-63176449 None:intergenic 25.0%
! ATCAACAACATGAATATTGT+TGG - chr1_3:63176529-63176548 None:intergenic 25.0%
! TTATTTGAAAGAAAAAGTCC+AGG - chr1_3:63176600-63176619 None:intergenic 25.0%
! TCCTATTAAAACTTCTTCTA+TGG + chr1_3:63176645-63176664 Msa0132180:intron 25.0%
!!! TCCATAGAAGAAGTTTTAAT+AGG - chr1_3:63176649-63176668 None:intergenic 25.0%
!! ATTGTTCTCTTATGTTGTTT+GGG + chr1_3:63177031-63177050 Msa0132180:three_prime_UTR 25.0%
! GAAGAAACTCAACAAAAAAA+TGG - chr1_3:63177152-63177171 None:intergenic 25.0%
! CTATAATATGACACCTAAAA+TGG - chr1_3:63177179-63177198 None:intergenic 25.0%
! ACATCATTTAACGACTTAAA+AGG - chr1_3:63177314-63177333 None:intergenic 25.0%
! ACTGAACAAAGCATTATCTT+TGG - chr1_3:63172900-63172919 None:intergenic 30.0%
GAATAAATGGCATCTTTGTA+TGG - chr1_3:63172927-63172946 None:intergenic 30.0%
GGATGAAGTTGAAGAATAAA+TGG - chr1_3:63172940-63172959 None:intergenic 30.0%
TGATTTCTTGCTGAAAATGA+AGG - chr1_3:63172995-63173014 None:intergenic 30.0%
TTAGAAACAATTGAACCATG+AGG - chr1_3:63173060-63173079 None:intergenic 30.0%
! TTTAGAGCAAAACTTGAAGT+GGG - chr1_3:63173106-63173125 None:intergenic 30.0%
!!! TTTTAGAGCAAAACTTGAAG+TGG - chr1_3:63173107-63173126 None:intergenic 30.0%
!!! AAGTTTTGCTCTAAAAATGG+TGG + chr1_3:63173111-63173130 Msa0132180:CDS 30.0%
!!! AGTTTTGCTCTAAAAATGGT+GGG + chr1_3:63173112-63173131 Msa0132180:CDS 30.0%
AGGTAGTAAAGATTATGTGA+AGG + chr1_3:63173290-63173309 Msa0132180:CDS 30.0%
AAAAGATTATGTGAGTGATG+AGG + chr1_3:63173359-63173378 Msa0132180:CDS 30.0%
TCCTTTGAATGGTAAAGAAA+TGG + chr1_3:63173557-63173576 Msa0132180:CDS 30.0%
TCCATTTCTTTACCATTCAA+AGG - chr1_3:63173561-63173580 None:intergenic 30.0%
! TTTGTTATGTGATGTGAACA+AGG + chr1_3:63173584-63173603 Msa0132180:CDS 30.0%
AAGAATGATGAAGTAATGAG+TGG + chr1_3:63173648-63173667 Msa0132180:CDS 30.0%
TAAAACCTCAGCAAACAAAA+TGG - chr1_3:63173712-63173731 None:intergenic 30.0%
!! ATTTTGTTTGCTGAGGTTTT+AGG + chr1_3:63173711-63173730 Msa0132180:CDS 30.0%
GCATCTACTAAACTAAACAT+TGG - chr1_3:63173848-63173867 None:intergenic 30.0%
AAACATGGAAGTTGAAAACT+TGG - chr1_3:63173872-63173891 None:intergenic 30.0%
! TCCATGTTTAGTTTATGAGT+TGG + chr1_3:63173883-63173902 Msa0132180:intron 30.0%
TCCAACTCATAAACTAAACA+TGG - chr1_3:63173887-63173906 None:intergenic 30.0%
ATGGTCTCATGTGTATATTT+GGG - chr1_3:63173970-63173989 None:intergenic 30.0%
TATGGTCTCATGTGTATATT+TGG - chr1_3:63173971-63173990 None:intergenic 30.0%
GATAAACGTTAATCCAAACA+GGG - chr1_3:63174060-63174079 None:intergenic 30.0%
TGATAAACGTTAATCCAAAC+AGG - chr1_3:63174061-63174080 None:intergenic 30.0%
! AATGACTTGGAGTATATGTA+TGG + chr1_3:63174222-63174241 Msa0132180:intron 30.0%
GAACATAAACTTCAAGTCAA+TGG - chr1_3:63174570-63174589 None:intergenic 30.0%
GCAAGAAAGTAAGGAAAAAT+AGG - chr1_3:63174935-63174954 None:intergenic 30.0%
! TTTTCCTTACTTTCTTGCAT+CGG + chr1_3:63174937-63174956 Msa0132180:intron 30.0%
!! ATCTTAATTTGTGCTCCATA+TGG - chr1_3:63175095-63175114 None:intergenic 30.0%
TATGGAGCACAAATTAAGAT+TGG + chr1_3:63175095-63175114 Msa0132180:CDS 30.0%
AGATTGGAAAAACTAACAGA+AGG + chr1_3:63175111-63175130 Msa0132180:CDS 30.0%
ATGAATGCATTAGGTAAATC+AGG + chr1_3:63175221-63175240 Msa0132180:intron 30.0%
TTAGGAAAACGTCTATATGT+TGG - chr1_3:63175254-63175273 None:intergenic 30.0%
TTGTGAAACTTTGAATTTGG+TGG + chr1_3:63175284-63175303 Msa0132180:intron 30.0%
ACCATATAGATAACAATGAC+GGG - chr1_3:63175350-63175369 None:intergenic 30.0%
CACCATATAGATAACAATGA+CGG - chr1_3:63175351-63175370 None:intergenic 30.0%
AACCAATTACATATCCCTAA+GGG - chr1_3:63175469-63175488 None:intergenic 30.0%
AAACCAATTACATATCCCTA+AGG - chr1_3:63175470-63175489 None:intergenic 30.0%
TTAGGGATATGTAATTGGTT+TGG + chr1_3:63175469-63175488 Msa0132180:intron 30.0%
!! TATGTAATTGGTTTGGTATC+AGG + chr1_3:63175476-63175495 Msa0132180:intron 30.0%
ACAAACCAAACCATACTATT+CGG - chr1_3:63175710-63175729 None:intergenic 30.0%
!! TATGGTTTGGTTTGTTCAAT+GGG + chr1_3:63175715-63175734 Msa0132180:intron 30.0%
GTTGTAGATAAAAAGCAAGT+AGG - chr1_3:63175761-63175780 None:intergenic 30.0%
TCGATCCAAAATGAGAAATT+TGG + chr1_3:63175802-63175821 Msa0132180:intron 30.0%
ATAACAACGATAAGGTAGTA+GGG - chr1_3:63175962-63175981 None:intergenic 30.0%
! ACTGCAACTTTTAATCTGTA+AGG + chr1_3:63176019-63176038 Msa0132180:intron 30.0%
CAGCTTGATAAAATATAGAC+AGG - chr1_3:63176091-63176110 None:intergenic 30.0%
! TTACCTCAGAGAGATTTTAT+CGG - chr1_3:63176253-63176272 None:intergenic 30.0%
ATACACCCAACAATTACAAA+AGG - chr1_3:63176296-63176315 None:intergenic 30.0%
CATAAACAAATGAATGAGTG+AGG + chr1_3:63176352-63176371 Msa0132180:intron 30.0%
! AATTTTGTAGAGACAATAGG+AGG - chr1_3:63176767-63176786 None:intergenic 30.0%
! CCTAATTTTGTAGAGACAAT+AGG - chr1_3:63176770-63176789 None:intergenic 30.0%
CCTATTGTCTCTACAAAATT+AGG + chr1_3:63176767-63176786 Msa0132180:CDS 30.0%
! TAAAGTGCTTCATCTTCATA+AGG - chr1_3:63176815-63176834 None:intergenic 30.0%
CTTCATATGTTCTTCTCAAA+CGG - chr1_3:63176970-63176989 None:intergenic 30.0%
CATTGTTCTCTTATGTTGTT+TGG + chr1_3:63177030-63177049 Msa0132180:three_prime_UTR 30.0%
AATATGACACCTAAAATGGA+GGG - chr1_3:63177175-63177194 None:intergenic 30.0%
TAATATGACACCTAAAATGG+AGG - chr1_3:63177176-63177195 None:intergenic 30.0%
ATAGTTGGATGTAAATTCTG+AGG + chr1_3:63177209-63177228 Msa0132180:three_prime_UTR 30.0%
TAGTTGGATGTAAATTCTGA+GGG + chr1_3:63177210-63177229 Msa0132180:three_prime_UTR 30.0%
ACGTGATTACAATTACATCT+TGG - chr1_3:63177395-63177414 None:intergenic 30.0%
GGAGTGGAAAGAACAATATT+GGG - chr1_3:63173039-63173058 None:intergenic 35.0%
AGGAGTGGAAAGAACAATAT+TGG - chr1_3:63173040-63173059 None:intergenic 35.0%
!! TAAAAATGGTGGGTTTGATG+AGG + chr1_3:63173122-63173141 Msa0132180:CDS 35.0%
ACTAGGTACAATGTTAACCA+AGG + chr1_3:63173527-63173546 Msa0132180:CDS 35.0%
!! GTTTTAGGTAGAACACTTAG+TGG + chr1_3:63173726-63173745 Msa0132180:CDS 35.0%
AGCCTTCTAGTAGAAATCAA+CGG - chr1_3:63173756-63173775 None:intergenic 35.0%
TGGTCTCATGTGTATATTTG+GGG - chr1_3:63173969-63173988 None:intergenic 35.0%
! TATCCAATTTTTGCCCTGTT+TGG + chr1_3:63174044-63174063 Msa0132180:intron 35.0%
AATCCAAACAGGGCAAAAAT+TGG - chr1_3:63174050-63174069 None:intergenic 35.0%
AAGTTATCCTGAAGAGCTTA+TGG + chr1_3:63174166-63174185 Msa0132180:intron 35.0%
CTAATTTCCATAAGCTCTTC+AGG - chr1_3:63174176-63174195 None:intergenic 35.0%
!!! ACAACAGTAGATGTCACTTT+TGG - chr1_3:63174252-63174271 None:intergenic 35.0%
TCTGTAATTCTAACCTCGAT+AGG - chr1_3:63174506-63174525 None:intergenic 35.0%
AGAATTACAGAGTGGAATAC+TGG + chr1_3:63174515-63174534 Msa0132180:CDS 35.0%
TTCATGAATTCGGATGTGTA+GGG + chr1_3:63174621-63174640 Msa0132180:intron 35.0%
! GAAAATGTAAGCTGCAGTTT+TGG + chr1_3:63174708-63174727 Msa0132180:intron 35.0%
CGTATCAGCAAGAGATTATA+AGG - chr1_3:63174788-63174807 None:intergenic 35.0%
! ATACGTGATCATGATGATGT+AGG + chr1_3:63174803-63174822 Msa0132180:intron 35.0%
! TGATCATGATGATGTAGGTT+GGG + chr1_3:63174808-63174827 Msa0132180:intron 35.0%
! AAAAGGCATATCTTCGTGAA+GGG + chr1_3:63175036-63175055 Msa0132180:CDS 35.0%
!! GAGTTATTTTCGATGGATGA+TGG + chr1_3:63175186-63175205 Msa0132180:intron 35.0%
AATGCATTAGGTAAATCAGG+CGG + chr1_3:63175224-63175243 Msa0132180:intron 35.0%
CGTCATTGTTATCTATATGG+TGG + chr1_3:63175349-63175368 Msa0132180:intron 35.0%
ACAGCAGCAAATAAATGGAA+AGG - chr1_3:63175390-63175409 None:intergenic 35.0%
! ATAGATTTCAGTAGCCCTTT+TGG + chr1_3:63175594-63175613 Msa0132180:intron 35.0%
CAAACCAAACCATACTATTC+GGG - chr1_3:63175709-63175728 None:intergenic 35.0%
!! GTATGGTTTGGTTTGTTCAA+TGG + chr1_3:63175714-63175733 Msa0132180:intron 35.0%
CATAACAACGATAAGGTAGT+AGG - chr1_3:63175963-63175982 None:intergenic 35.0%
CTACTACCTTATCGTTGTTA+TGG + chr1_3:63175961-63175980 Msa0132180:intron 35.0%
TGCATTCCAAATGAACATGT+TGG + chr1_3:63176109-63176128 Msa0132180:intron 35.0%
AGGAATCCAACATGTTCATT+TGG - chr1_3:63176118-63176137 None:intergenic 35.0%
! TACCTCAGAGAGATTTTATC+GGG - chr1_3:63176252-63176271 None:intergenic 35.0%
TCAAGTCTTTCTGGGTTAAT+TGG + chr1_3:63176315-63176334 Msa0132180:intron 35.0%
! TCTTGGAGGATTTTCATGTT+AGG - chr1_3:63176413-63176432 None:intergenic 35.0%
CTCCATAAATACTCTCTGTA+TGG - chr1_3:63176705-63176724 None:intergenic 35.0%
!! CATACAGAGAGTATTTATGG+AGG + chr1_3:63176703-63176722 Msa0132180:intron 35.0%
ATTTATGGAGGCTGATATGA+TGG + chr1_3:63176715-63176734 Msa0132180:CDS 35.0%
! ATGAAGCACTTTATGCAAAC+TGG + chr1_3:63176822-63176841 Msa0132180:CDS 35.0%
TCAAAAAATCTCAACACTCG+AGG - chr1_3:63177004-63177023 None:intergenic 35.0%
! AGCATGGGCTATAAAGTATT+TGG + chr1_3:63177063-63177082 Msa0132180:three_prime_UTR 35.0%
ATATGACACCTAAAATGGAG+GGG - chr1_3:63177174-63177193 None:intergenic 35.0%
AAGCATACGGAAGAGTTACA+AGG - chr1_3:63172961-63172980 None:intergenic 40.0%
ATTGTTCTTTCCACTCCTCA+TGG + chr1_3:63173042-63173061 Msa0132180:CDS 40.0%
AACAATTGAACCATGAGGAG+TGG - chr1_3:63173055-63173074 None:intergenic 40.0%
! GAGGTTTCAAGTGATTTAGC+TGG + chr1_3:63173141-63173160 Msa0132180:CDS 40.0%
GAGTGATGAGGTTGAAAAAG+AGG + chr1_3:63173371-63173390 Msa0132180:CDS 40.0%
GAGGTTGAAAAAGAGGATGA+AGG + chr1_3:63173378-63173397 Msa0132180:CDS 40.0%
GAGGATGAAGGAAAAGAAGA+AGG + chr1_3:63173390-63173409 Msa0132180:CDS 40.0%
GAGTATTATGAGCCAAAACC+TGG + chr1_3:63173435-63173454 Msa0132180:CDS 40.0%
! ACCACAAAATCACCAGGTTT+TGG - chr1_3:63173450-63173469 None:intergenic 40.0%
! AAACCTGGTGATTTTGTGGT+TGG + chr1_3:63173450-63173469 Msa0132180:CDS 40.0%
AATGTTGGAGCAGACTTACT+AGG + chr1_3:63173510-63173529 Msa0132180:CDS 40.0%
!! ATTCAAAGGAAGCACTTCCT+TGG - chr1_3:63173547-63173566 None:intergenic 40.0%
!! AAGGAAGTGCTTCCTTTGAA+TGG + chr1_3:63173546-63173565 Msa0132180:CDS 40.0%
! CAAGGATGCCGAGAATTTTA+CGG + chr1_3:63173602-63173621 Msa0132180:CDS 40.0%
CCCTTGAACCGTAAAATTCT+CGG - chr1_3:63173613-63173632 None:intergenic 40.0%
! CCGAGAATTTTACGGTTCAA+GGG + chr1_3:63173610-63173629 Msa0132180:CDS 40.0%
! TTTTACGGTTCAAGGGAAGA+TGG + chr1_3:63173617-63173636 Msa0132180:CDS 40.0%
TTTACGGTTCAAGGGAAGAT+GGG + chr1_3:63173618-63173637 Msa0132180:CDS 40.0%
ATGGTTCCAGTTTCTACAAC+AGG - chr1_3:63173693-63173712 None:intergenic 40.0%
!! TGGAACCATTTTGTTTGCTG+AGG + chr1_3:63173704-63173723 Msa0132180:CDS 40.0%
!! GACCGTTGATTTCTACTAGA+AGG + chr1_3:63173751-63173770 Msa0132180:CDS 40.0%
! ATGCCAAATTGGCTCTTCAA+TGG + chr1_3:63174012-63174031 Msa0132180:intron 40.0%
TCACCATTGAAGAGCCAATT+TGG - chr1_3:63174018-63174037 None:intergenic 40.0%
ATGGACATGTCTGAATGACT+TGG + chr1_3:63174209-63174228 Msa0132180:intron 40.0%
GACTTGGAGTATATGTATGG+AGG + chr1_3:63174225-63174244 Msa0132180:intron 40.0%
TCGAGGTTAGAATTACAGAG+TGG + chr1_3:63174507-63174526 Msa0132180:CDS 40.0%
ATTACAGAGTGGAATACTGG+CGG + chr1_3:63174518-63174537 Msa0132180:CDS 40.0%
CTTCATGAATTCGGATGTGT+AGG + chr1_3:63174620-63174639 Msa0132180:intron 40.0%
TTGGAACGTTCTTCTTGTCA+AGG + chr1_3:63174727-63174746 Msa0132180:intron 40.0%
TGGAACGTTCTTCTTGTCAA+GGG + chr1_3:63174728-63174747 Msa0132180:intron 40.0%
! GTGATCATGATGATGTAGGT+TGG + chr1_3:63174807-63174826 Msa0132180:intron 40.0%
TGCTTAGTGAAAAGCAAGCT+TGG + chr1_3:63174883-63174902 Msa0132180:CDS 40.0%
GCTTAGTGAAAAGCAAGCTT+GGG + chr1_3:63174884-63174903 Msa0132180:CDS 40.0%
AACACCGATGCAAGAAAGTA+AGG - chr1_3:63174944-63174963 None:intergenic 40.0%
GTGAAATGACGTACAGGAAA+AGG + chr1_3:63175019-63175038 Msa0132180:intron 40.0%
! GAAAAGGCATATCTTCGTGA+AGG + chr1_3:63175035-63175054 Msa0132180:CDS 40.0%
GCCCGTCATTGTTATCTATA+TGG + chr1_3:63175346-63175365 Msa0132180:intron 40.0%
AGCCCTTAGGGATATGTAAT+TGG + chr1_3:63175464-63175483 Msa0132180:intron 40.0%
! CTGACAGGTTTGTTCTATTC+CGG - chr1_3:63175538-63175557 None:intergenic 40.0%
AAATCTATCAGGCACCTAAC+TGG - chr1_3:63175582-63175601 None:intergenic 40.0%
AAGGGCTACTGAAATCTATC+AGG - chr1_3:63175593-63175612 None:intergenic 40.0%
!! TTTCAGTAGCCCTTTTGGTT+TGG + chr1_3:63175599-63175618 Msa0132180:intron 40.0%
TTGAGGATGCCAAACCAAAA+GGG - chr1_3:63175611-63175630 None:intergenic 40.0%
CTACTATCTCCTATGAGACA+GGG + chr1_3:63175672-63175691 Msa0132180:intron 40.0%
AAACCATACTATTCGGGATC+GGG - chr1_3:63175703-63175722 None:intergenic 40.0%
CAAACCATACTATTCGGGAT+CGG - chr1_3:63175704-63175723 None:intergenic 40.0%
!! GTTTGGTTTGTTCAATGGGA+CGG + chr1_3:63175719-63175738 Msa0132180:intron 40.0%
ATGCAGCCATAACAACGATA+AGG - chr1_3:63175970-63175989 None:intergenic 40.0%
! ATGGCTGCATTGCTGTTAAT+AGG + chr1_3:63175980-63175999 Msa0132180:intron 40.0%
ACATGTTGGATTCCTTTCAG+TGG + chr1_3:63176123-63176142 Msa0132180:intron 40.0%
CATGTTGGATTCCTTTCAGT+GGG + chr1_3:63176124-63176143 Msa0132180:intron 40.0%
AGCCTTAACCTTCTCATCAA+CGG - chr1_3:63176208-63176227 None:intergenic 40.0%
! ACCTCAGAGAGATTTTATCG+GGG - chr1_3:63176251-63176270 None:intergenic 40.0%
TTGGGTGTATCAAGTCTTTC+TGG + chr1_3:63176306-63176325 Msa0132180:intron 40.0%
TGGGTGTATCAAGTCTTTCT+GGG + chr1_3:63176307-63176326 Msa0132180:intron 40.0%
TCTAAGAACGGTTCTTCTAC+AGG + chr1_3:63176462-63176481 Msa0132180:intron 40.0%
AAAGTCCAGGTTCACTTTCA+AGG - chr1_3:63176587-63176606 None:intergenic 40.0%
!! GGCCATACAGAGAGTATTTA+TGG + chr1_3:63176700-63176719 Msa0132180:intron 40.0%
TTTGTAGAGACAATAGGAGG+AGG - chr1_3:63176764-63176783 None:intergenic 40.0%
! TCATAAGGCAAAGCACTAGT+TGG - chr1_3:63176800-63176819 None:intergenic 40.0%
CACTTTATGCAAACTGGAAG+TGG + chr1_3:63176828-63176847 Msa0132180:CDS 40.0%
TCAGAGAACCTTATGTTGCA+TGG + chr1_3:63176920-63176939 Msa0132180:three_prime_UTR 40.0%
! TTTGGGCACATAAAGAGCAT+GGG + chr1_3:63177048-63177067 Msa0132180:three_prime_UTR 40.0%
! AGTTTCTTCCCCTCCATTTT+AGG + chr1_3:63177163-63177182 Msa0132180:three_prime_UTR 40.0%
GGAGTTGCAGTTGAAGCATA+CGG - chr1_3:63172974-63172993 None:intergenic 45.0%
TCAACTTCCAGAACAGGTGA+AGG - chr1_3:63173210-63173229 None:intergenic 45.0%
!! ACCTGTTCTGGAAGTTGAGT+TGG + chr1_3:63173212-63173231 Msa0132180:CDS 45.0%
TCCAACTCAACTTCCAGAAC+AGG - chr1_3:63173216-63173235 None:intergenic 45.0%
! ACAAGAGAAGCCTTCTGAAG+AGG + chr1_3:63173236-63173255 Msa0132180:CDS 45.0%
GCTAAAGCTTCCTCTTCAGA+AGG - chr1_3:63173249-63173268 None:intergenic 45.0%
! GCCAAAACCTGGTGATTTTG+TGG + chr1_3:63173446-63173465 Msa0132180:CDS 45.0%
ACACCAACCACAAAATCACC+AGG - chr1_3:63173456-63173475 None:intergenic 45.0%
!! GTGGTTGGTGTTGTTGTTTC+AGG + chr1_3:63173465-63173484 Msa0132180:CDS 45.0%
! GCCGAGAATTTTACGGTTCA+AGG + chr1_3:63173609-63173628 Msa0132180:CDS 45.0%
CTACTAGAAGGCTCTTTCGT+CGG + chr1_3:63173763-63173782 Msa0132180:CDS 45.0%
ACAGCTCAATGAACCTATCG+AGG + chr1_3:63174490-63174509 Msa0132180:CDS 45.0%
AGACCTCAATCGTTGTTAGC+AGG - chr1_3:63174544-63174563 None:intergenic 45.0%
CTTGTCACAAGCTCAGCTTT+GGG - chr1_3:63174663-63174682 None:intergenic 45.0%
TCTTGTCACAAGCTCAGCTT+TGG - chr1_3:63174664-63174683 None:intergenic 45.0%
TGTACGTCATTTCACACAGC+AGG - chr1_3:63175014-63175033 None:intergenic 45.0%
TGCTGTGTGAAATGACGTAC+AGG + chr1_3:63175013-63175032 Msa0132180:intron 45.0%
!!! CGTGAAGGGACAGTTTTAGA+CGG + chr1_3:63175050-63175069 Msa0132180:CDS 45.0%
ACAGAAGGTGAGTGATTGCT+TGG + chr1_3:63175126-63175145 Msa0132180:intron 45.0%
CGGAATAGAACAAACCTGTC+AGG + chr1_3:63175536-63175555 Msa0132180:intron 45.0%
GGTTGAATCAGGAACCAGTT+AGG + chr1_3:63175565-63175584 Msa0132180:intron 45.0%
CTTGAGGATGCCAAACCAAA+AGG - chr1_3:63175612-63175631 None:intergenic 45.0%
AAGCAGGGATTTAGGTCTTG+AGG - chr1_3:63175628-63175647 None:intergenic 45.0%
TTGAAGCGAAGCAGGGATTT+AGG - chr1_3:63175636-63175655 None:intergenic 45.0%
! AACTCGTTTGAAGCGAAGCA+GGG - chr1_3:63175643-63175662 None:intergenic 45.0%
CCTGTCTCATAGGAGATAGT+AGG - chr1_3:63175674-63175693 None:intergenic 45.0%
CCTACTATCTCCTATGAGAC+AGG + chr1_3:63175671-63175690 Msa0132180:intron 45.0%
AACCATACTATTCGGGATCG+GGG - chr1_3:63175702-63175721 None:intergenic 45.0%
CGATCCCGAATAGTATGGTT+TGG + chr1_3:63175702-63175721 Msa0132180:intron 45.0%
TTTGTTCAATGGGACGGATC+CGG + chr1_3:63175725-63175744 Msa0132180:intron 45.0%
! CTCCGTTGATGAGAAGGTTA+AGG + chr1_3:63176203-63176222 Msa0132180:CDS 45.0%
! AGGTTAAGGCTCTTGTTGTG+AGG + chr1_3:63176217-63176236 Msa0132180:CDS 45.0%
TCCCCGATAAAATCTCTCTG+AGG + chr1_3:63176247-63176266 Msa0132180:CDS 45.0%
!! CTGGGTTAATTGGCCTTGTT+TGG + chr1_3:63176325-63176344 Msa0132180:intron 45.0%
!! ACGTAGTCGAGCTCTAAGAA+CGG + chr1_3:63176450-63176469 Msa0132180:intron 45.0%
TCCAGGTTCACTTTCAAGGT+CGG - chr1_3:63176583-63176602 None:intergenic 45.0%
!! GGCAAAGCACTAGTTGGTAA+GGG - chr1_3:63176794-63176813 None:intergenic 45.0%
! AGGCAAAGCACTAGTTGGTA+AGG - chr1_3:63176795-63176814 None:intergenic 45.0%
AATCTCAACACTCGAGGTAG+AGG - chr1_3:63176998-63177017 None:intergenic 45.0%
GTTTGGGCACATAAAGAGCA+TGG + chr1_3:63177047-63177066 Msa0132180:three_prime_UTR 45.0%
ATAGTGCAAGACGCTTCTCT+GGG - chr1_3:63177266-63177285 None:intergenic 45.0%
GAACAAGCCTTCACCTGTTC+TGG + chr1_3:63173200-63173219 Msa0132180:CDS 50.0%
! ATGAGTGGAGTATCAGTGCC+AGG + chr1_3:63173663-63173682 Msa0132180:CDS 50.0%
GTTTCTACAACAGGCCTTCC+TGG - chr1_3:63173684-63173703 None:intergenic 50.0%
GGAAGGCCTGTTGTAGAAAC+TGG + chr1_3:63173684-63173703 Msa0132180:CDS 50.0%
!! TCACAAGCTCAGCTTTGGGT+AGG - chr1_3:63174659-63174678 None:intergenic 50.0%
TGCTTTCTGCATGAGCCCTT+AGG + chr1_3:63175451-63175470 Msa0132180:intron 50.0%
GCTTTCTGCATGAGCCCTTA+GGG + chr1_3:63175452-63175471 Msa0132180:intron 50.0%
AACAAACCTGTCAGGCACAG+TGG + chr1_3:63175544-63175563 Msa0132180:intron 50.0%
ATTCAACCACTGTGCCTGAC+AGG - chr1_3:63175553-63175572 None:intergenic 50.0%
TCAGGCACAGTGGTTGAATC+AGG + chr1_3:63175554-63175573 Msa0132180:intron 50.0%
! CAACTCGTTTGAAGCGAAGC+AGG - chr1_3:63175644-63175663 None:intergenic 50.0%
AACCCCGATCCCGAATAGTA+TGG + chr1_3:63175697-63175716 Msa0132180:intron 50.0%
! GCAAGTAGGGCATTCACAAC+CGG - chr1_3:63175747-63175766 None:intergenic 50.0%
ACATGCAGCAACCCACTGAA+AGG - chr1_3:63176138-63176157 None:intergenic 50.0%
! CGTACTCTCCGTTGATGAGA+AGG + chr1_3:63176197-63176216 Msa0132180:CDS 50.0%
CTGGTGAGCCATGCAACATA+AGG - chr1_3:63176931-63176950 None:intergenic 50.0%
TCAAACGGCATGTCCGTCAT+GGG - chr1_3:63176955-63176974 None:intergenic 50.0%
GATAGTGCAAGACGCTTCTC+TGG - chr1_3:63177267-63177286 None:intergenic 50.0%
! GTGGAGTATCAGTGCCAGGA+AGG + chr1_3:63173667-63173686 Msa0132180:CDS 55.0%
GGCTCTTTCGTCGGATTGCT+TGG + chr1_3:63173772-63173791 Msa0132180:CDS 55.0%
! GGATTGCTTGGCATCGAGTG+AGG + chr1_3:63173784-63173803 Msa0132180:CDS 55.0%
CGGCCTGCTAACAACGATTG+AGG + chr1_3:63174538-63174557 Msa0132180:CDS 55.0%
CGGGGTTTACCCTGTCTCAT+AGG - chr1_3:63175684-63175703 None:intergenic 55.0%
TCAAGGTCGGCAATGCTGCA+TGG - chr1_3:63176570-63176589 None:intergenic 55.0%
GCCGACCTTGAAAGTGAACC+TGG + chr1_3:63176579-63176598 Msa0132180:CDS 55.0%
ATGGCTCACCAGTCCCATGA+CGG + chr1_3:63176939-63176958 Msa0132180:three_prime_UTR 55.0%
CTCAAACGGCATGTCCGTCA+TGG - chr1_3:63176956-63176975 None:intergenic 55.0%
CTCAACACTCGAGGTAGAGG+AGG - chr1_3:63176995-63177014 None:intergenic 55.0%
! TGCTTGGCATCGAGTGAGGC+AGG + chr1_3:63173788-63173807 Msa0132180:CDS 60.0%
CGGCATGTCCGTCATGGGAC+TGG - chr1_3:63176950-63176969 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 63172869 63177443 63172869 ID=Msa0132180;Name=Msa0132180
chr1_3 mRNA 63172869 63177443 63172869 ID=Msa0132180-mRNA-1;Parent=Msa0132180;Name=Msa0132180-mRNA-1;_AED=0.13;_eAED=0.13;_QI=65|1|1|1|1|1|8|575|511
chr1_3 exon 63172869 63173809 63172869 ID=Msa0132180-mRNA-1:exon:21119;Parent=Msa0132180-mRNA-1
chr1_3 exon 63174485 63174559 63174485 ID=Msa0132180-mRNA-1:exon:21120;Parent=Msa0132180-mRNA-1
chr1_3 exon 63174642 63174713 63174642 ID=Msa0132180-mRNA-1:exon:21121;Parent=Msa0132180-mRNA-1
chr1_3 exon 63174825 63174905 63174825 ID=Msa0132180-mRNA-1:exon:21122;Parent=Msa0132180-mRNA-1
chr1_3 exon 63175035 63175132 63175035 ID=Msa0132180-mRNA-1:exon:21123;Parent=Msa0132180-mRNA-1
chr1_3 exon 63176143 63176268 63176143 ID=Msa0132180-mRNA-1:exon:21124;Parent=Msa0132180-mRNA-1
chr1_3 exon 63176575 63176623 63176575 ID=Msa0132180-mRNA-1:exon:21125;Parent=Msa0132180-mRNA-1
chr1_3 exon 63176710 63177443 63176710 ID=Msa0132180-mRNA-1:exon:21126;Parent=Msa0132180-mRNA-1
chr1_3 five_prime_UTR 63172869 63172933 63172869 ID=Msa0132180-mRNA-1:five_prime_utr;Parent=Msa0132180-mRNA-1
chr1_3 CDS 63172934 63173809 63172934 ID=Msa0132180-mRNA-1:cds;Parent=Msa0132180-mRNA-1
chr1_3 CDS 63174485 63174559 63174485 ID=Msa0132180-mRNA-1:cds;Parent=Msa0132180-mRNA-1
chr1_3 CDS 63174642 63174713 63174642 ID=Msa0132180-mRNA-1:cds;Parent=Msa0132180-mRNA-1
chr1_3 CDS 63174825 63174905 63174825 ID=Msa0132180-mRNA-1:cds;Parent=Msa0132180-mRNA-1
chr1_3 CDS 63175035 63175132 63175035 ID=Msa0132180-mRNA-1:cds;Parent=Msa0132180-mRNA-1
chr1_3 CDS 63176143 63176268 63176143 ID=Msa0132180-mRNA-1:cds;Parent=Msa0132180-mRNA-1
chr1_3 CDS 63176575 63176623 63176575 ID=Msa0132180-mRNA-1:cds;Parent=Msa0132180-mRNA-1
chr1_3 CDS 63176710 63176868 63176710 ID=Msa0132180-mRNA-1:cds;Parent=Msa0132180-mRNA-1
chr1_3 three_prime_UTR 63176869 63177443 63176869 ID=Msa0132180-mRNA-1:three_prime_utr;Parent=Msa0132180-mRNA-1
Gene Sequence

>Msa0132180

ATGCCATTTATTCTTCAACTTCATCCTTGTAACTCTTCCGTATGCTTCAACTGCAACTCCTTCATTTTCAGCAAGAAATCATATAAGAAAGTTTGTTCTTTTCCCAATATTGTTCTTTCCACTCCTCATGGTTCAATTGTTTCTAAGAAAGTTTCTATTTTGAGCAATACCCACTTCAAGTTTTGCTCTAAAAATGGTGGGTTTGATGAGGTTTCAAGTGATTTAGCTGGAGAAGCCATTGATGATGAAATTCAAGTTGAGTTGTTGAACAAGCCTTCACCTGTTCTGGAAGTTGAGTTGGAACAAGAGAAGCCTTCTGAAGAGGAAGCTTTAGCACCTTTTTTTAAGTTTTTCAAAGGTAGTAAAGATTATGTGAAGGATGTTGAAGAAGATAATGAGATATTGGAATTGGAAGTTTCTGAAGAAAAAGATTATGTGAGTGATGAGGTTGAAAAAGAGGATGAAGGAAAAGAAGAAGGAGAAGATAAGAAAGTTAATGTTGAGTATTATGAGCCAAAACCTGGTGATTTTGTGGTTGGTGTTGTTGTTTCAGGTAATGAAAACAAACTTGATGTAAATGTTGGAGCAGACTTACTAGGTACAATGTTAACCAAGGAAGTGCTTCCTTTGAATGGTAAAGAAATGGATCATTTGTTATGTGATGTGAACAAGGATGCCGAGAATTTTACGGTTCAAGGGAAGATGGGAATTGTAAAGAATGATGAAGTAATGAGTGGAGTATCAGTGCCAGGAAGGCCTGTTGTAGAAACTGGAACCATTTTGTTTGCTGAGGTTTTAGGTAGAACACTTAGTGGTAGACCGTTGATTTCTACTAGAAGGCTCTTTCGTCGGATTGCTTGGCATCGAGTGAGGCAGATACAACAGCTCAATGAACCTATCGAGGTTAGAATTACAGAGTGGAATACTGGCGGCCTGCTAACAACGATTGAGGGTTTACGAGCTTTCCTACCCAAAGCTGAGCTTGTGACAAGAGTAAATAGCTTTACTGAATTGAAAGAAAATGTTGGGCGTCGTATGTTTGTAGAAATTACTCGATTAGATGAAGCTAAAAATTCTTTGGTGCTTAGTGAAAAGCAAGCTTGGGAAAAGGCATATCTTCGTGAAGGGACAGTTTTAGACGGAACTGTAAAAAAGATTTTTCCATATGGAGCACAAATTAAGATTGGAAAAACTAACAGAAGTGGGTTGCTGCATGTTTCAAATATCACTCGAGCTGAAGTTACTTCTGTCAGTGACGTACTCTCCGTTGATGAGAAGGTTAAGGCTCTTGTTGTGAGGTCAATGTTCCCCGATAAAATCTCTCTGAGCATTGCCGACCTTGAAAGTGAACCTGGACTTTTTCTTTCAAATAAAGAGAGAGTATTTATGGAGGCTGATATGATGGCAAAGAAATATAAACAAAAACTACCTCCTCCTATTGTCTCTACAAAATTAGGACCCTTACCAACTAGTGCTTTGCCTTATGAAGATGAAGCACTTTATGCAAACTGGAAGTGGTTTAAGTTTGAAAAATGA

Protein sequence

>Msa0132180

MPFILQLHPCNSSVCFNCNSFIFSKKSYKKVCSFPNIVLSTPHGSIVSKKVSILSNTHFKFCSKNGGFDEVSSDLAGEAIDDEIQVELLNKPSPVLEVELEQEKPSEEEALAPFFKFFKGSKDYVKDVEEDNEILELEVSEEKDYVSDEVEKEDEGKEEGEDKKVNVEYYEPKPGDFVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLNGKEMDHLLCDVNKDAENFTVQGKMGIVKNDEVMSGVSVPGRPVVETGTILFAEVLGRTLSGRPLISTRRLFRRIAWHRVRQIQQLNEPIEVRITEWNTGGLLTTIEGLRAFLPKAELVTRVNSFTELKENVGRRMFVEITRLDEAKNSLVLSEKQAWEKAYLREGTVLDGTVKKIFPYGAQIKIGKTNRSGLLHVSNITRAEVTSVSDVLSVDEKVKALVVRSMFPDKISLSIADLESEPGLFLSNKERVFMEADMMAKKYKQKLPPPIVSTKLGPLPTSALPYEDEALYANWKWFKFEK*