AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0075850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075850 MtrunA17_Chr1g0184791 79.021 143 2 2 1 115 103 245 1.35e-73 218
Msa0075850 MtrunA17_Chr7g0260641 71.311 122 7 2 21 115 130 250 6.65e-56 174
Msa0075850 MtrunA17_Chr1g0187921 64.662 133 18 3 11 115 105 236 6.88e-52 163
Msa0075850 MtrunA17_Chr1g0190711 68.067 119 10 2 24 115 136 253 8.81e-50 158
Msa0075850 MtrunA17_Chr5g0428141 53.333 135 34 3 7 114 214 346 9.25e-39 132
Msa0075850 MtrunA17_Chr5g0411501 59.167 120 19 3 25 115 217 335 1.16e-38 132
Msa0075850 MtrunA17_Chr6g0486121 56.780 118 23 2 25 114 136 253 2.31e-38 129
Msa0075850 MtrunA17_Chr8g0366881 57.500 120 21 3 25 115 230 348 2.84e-37 129
Msa0075850 MtrunA17_Chr8g0390281 53.782 119 26 1 25 114 174 292 7.59e-37 126
Msa0075850 MtrunA17_Chr2g0331411 55.462 119 23 3 25 114 208 325 2.47e-35 123
Msa0075850 MtrunA17_Chr1g0166011 53.763 93 30 2 25 104 91 183 3.97e-28 101
Msa0075850 MtrunA17_Chr1g0184801 53.763 93 30 1 25 104 110 202 1.57e-27 100
Msa0075850 MtrunA17_Chr1g0187961 53.261 92 30 2 25 103 87 178 2.30e-27 99.0
Msa0075850 MtrunA17_Chr7g0260621 53.763 93 30 1 25 104 110 202 4.61e-27 99.0
Msa0075850 MtrunA17_Chr4g0004181 50.515 97 34 3 25 107 76 172 2.12e-23 89.0
Msa0075850 MtrunA17_Chr1g0183251 42.735 117 36 2 25 110 147 263 6.61e-22 87.0
Msa0075850 MtrunA17_Chr2g0332141 43.011 93 31 1 25 95 8 100 1.21e-21 82.8
Msa0075850 MtrunA17_Chr2g0330951 33.043 115 44 2 25 106 149 263 2.33e-13 64.3
Msa0075850 MtrunA17_Chr4g0069561 41.573 89 39 3 22 97 93 181 2.34e-13 63.2
Msa0075850 MtrunA17_Chr8g0340731 35.088 114 39 3 18 96 144 257 3.53e-12 60.8
Msa0075850 MtrunA17_Chr1g0193861 37.778 90 42 3 21 96 81 170 6.23e-12 58.9
Msa0075850 MtrunA17_Chr4g0064131 32.941 85 52 1 19 98 123 207 4.67e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075850 AT3G04730.1 65.833 120 13 2 23 115 118 236 1.19e-49 157
Msa0075850 AT4G14550.1 58.451 142 29 3 1 115 90 228 1.61e-48 154
Msa0075850 AT3G23050.1 58.389 149 27 5 1 115 96 243 1.32e-47 152
Msa0075850 AT1G04250.1 54.545 143 27 3 1 115 97 229 8.53e-45 145
Msa0075850 AT4G14550.2 54.962 131 29 3 1 104 90 217 3.93e-40 133
Msa0075850 AT5G65670.2 58.333 120 20 3 25 115 218 336 6.90e-37 127
Msa0075850 AT4G29080.1 51.471 136 36 3 8 114 170 304 4.60e-36 125
Msa0075850 AT5G65670.1 57.377 122 20 4 25 115 218 338 4.88e-35 123
Msa0075850 AT2G22670.3 43.165 139 50 2 4 114 181 318 4.81e-31 112
Msa0075850 AT2G22670.1 43.165 139 50 2 4 114 181 318 4.81e-31 112
Msa0075850 AT2G22670.4 43.165 139 50 2 4 114 198 335 5.92e-31 112
Msa0075850 AT5G43700.1 50.476 105 39 1 13 104 78 182 3.32e-29 104
Msa0075850 AT1G04240.1 55.319 94 27 2 25 104 94 186 5.47e-28 101
Msa0075850 AT2G22670.5 41.727 139 50 3 4 114 181 316 8.35e-28 103
Msa0075850 AT2G22670.2 41.727 139 50 3 4 114 181 316 8.35e-28 103
Msa0075850 AT3G23030.1 51.456 103 36 2 14 103 69 170 9.83e-28 100
Msa0075850 AT1G04240.2 55.319 94 27 2 25 104 194 286 1.46e-27 102
Msa0075850 AT3G23030.2 51.456 103 36 2 14 103 156 257 3.86e-27 100
Msa0075850 AT4G14550.3 50.459 109 24 3 1 82 90 195 2.57e-26 97.4
Msa0075850 AT3G23050.2 50.862 116 23 4 1 83 96 210 9.77e-26 96.3
Msa0075850 AT3G15540.1 46.364 110 45 3 15 110 88 197 3.61e-25 94.4
Msa0075850 AT4G14560.1 51.685 89 30 1 25 100 76 164 8.17e-25 92.8
Msa0075850 AT1G04550.2 44.860 107 40 1 23 110 124 230 1.95e-23 90.9
Msa0075850 AT1G15580.1 53.012 83 29 1 24 96 75 157 6.48e-23 87.8
Msa0075850 AT2G33310.3 39.683 126 54 1 6 109 111 236 8.03e-23 89.4
Msa0075850 AT2G33310.1 39.683 126 54 1 6 109 111 236 8.03e-23 89.4
Msa0075850 AT2G33310.2 39.683 126 54 1 6 109 112 237 8.63e-23 89.4
Msa0075850 AT1G52830.1 43.689 103 44 2 16 104 83 185 5.30e-22 85.9
Msa0075850 AT4G28640.1 43.810 105 34 1 25 104 138 242 8.58e-19 79.0
Msa0075850 AT4G28640.3 43.689 103 33 1 25 102 138 240 1.25e-18 78.6
Msa0075850 AT4G28640.2 41.026 117 40 2 11 102 128 240 3.49e-18 78.2
Msa0075850 AT1G04100.1 50.685 73 32 3 33 104 191 260 4.48e-17 74.3
Msa0075850 AT5G25890.1 36.559 93 52 1 25 110 82 174 5.31e-17 72.8
Msa0075850 AT3G17600.1 39.506 81 40 2 25 96 74 154 3.96e-15 67.4
Msa0075850 AT2G46990.1 40.000 85 38 2 25 96 86 170 8.00e-15 67.0
Msa0075850 AT3G62100.1 35.789 95 46 2 17 96 74 168 5.28e-14 64.7
Msa0075850 AT3G16500.2 34.454 119 50 3 6 99 137 252 8.17e-14 65.9
Msa0075850 AT3G16500.1 34.454 119 50 3 6 99 137 252 8.74e-14 65.9
Msa0075850 AT1G51950.1 36.000 100 39 4 25 99 151 250 1.83e-11 59.3

Find 39 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATCCTTCACTGCTCTTT+TGG 0.116525 1_2:+51460128 None:intergenic
CTAACTTTCACAAAGCTTAT+TGG 0.117785 1_2:+51460076 None:intergenic
TTTAGAGTCATTATCGTTTC+TGG 0.134360 1_2:+51458017 None:intergenic
GCTTCAGTTGCCAAGTCAAC+TGG 0.308202 1_2:+51458192 None:intergenic
TTGTGAATCCCAAGGCATTA+AGG 0.313394 1_2:-51459284 Msa0075850:CDS
TGTGTATGTGTAACATTATA+TGG 0.326644 1_2:-51458103 Msa0075850:three_prime_UTR
CCATCTTTGTCTTCATAAGT+TGG 0.383939 1_2:+51459205 None:intergenic
CATGAAATCCTTAATGCCTT+GGG 0.384985 1_2:+51459276 None:intergenic
GCATCACATGGAGCAGGTTA+TGG 0.392191 1_2:+51458215 None:intergenic
TTCTGGTCATAATTTATACT+TGG 0.403351 1_2:+51458034 None:intergenic
TCATGAAATCCTTAATGCCT+TGG 0.406074 1_2:+51459275 None:intergenic
CATCTTTGTCTTCATAAGTT+GGG 0.414636 1_2:+51459206 None:intergenic
GAATGAGAGTAATAAGTTGA+TGG 0.457906 1_2:-51459254 Msa0075850:CDS
GGAAAGGAAGCCATTGGACT+CGG 0.495438 1_2:-51458849 Msa0075850:intron
AGGAAAATTTAAAGACAACT+TGG 0.497504 1_2:+51457877 None:intergenic
TAAGCTGCAGCAGAAACATA+TGG 0.513103 1_2:-51458164 Msa0075850:three_prime_UTR
CATGTGATGCCCAGTTGACT+TGG 0.514344 1_2:-51458202 Msa0075850:three_prime_UTR
AGGTCTACTTTACGGAGGTA+AGG 0.526416 1_2:+51460040 None:intergenic
ATGAAAGGAAAGGAAGCCAT+TGG 0.526527 1_2:-51458855 Msa0075850:CDS
AAGCTTTGTGAAAGTTAGCA+TGG 0.545131 1_2:-51460071 Msa0075850:CDS
TTTGTGAAAGTTAGCATGGA+TGG 0.550924 1_2:-51460067 Msa0075850:CDS
CTTCAGTTGCCAAGTCAACT+GGG 0.554821 1_2:+51458193 None:intergenic
CCAACTTATGAAGACAAAGA+TGG 0.567272 1_2:-51459205 Msa0075850:CDS
AACTGGGCATCACATGGAGC+AGG 0.567331 1_2:+51458209 None:intergenic
TGCTTGTCGGTGATGTACCA+TGG 0.581796 1_2:-51459174 Msa0075850:CDS
TATGTCAGCACCTAGAGCCA+TGG 0.584052 1_2:-51458280 Msa0075850:intron
GCTGCCCAAAAGAGCAGTGA+AGG 0.587247 1_2:-51460133 Msa0075850:CDS
ATGAAGACAAAGATGGCGAC+TGG 0.589440 1_2:-51459198 Msa0075850:CDS
TTCATAAGTTGGGACATAGT+CGG 0.596025 1_2:+51459216 None:intergenic
TTTACGTATCATGAAAGGAA+AGG 0.596184 1_2:-51458865 Msa0075850:CDS
AAGCGTTTACGTATCATGAA+AGG 0.600017 1_2:-51458870 Msa0075850:CDS
AATCGCATATGAATTATGAA+AGG 0.600975 1_2:+51457857 None:intergenic
GAATTGAAAACTTACTCCCA+TGG 0.601391 1_2:+51459157 None:intergenic
GATGGCGACTGGATGCTTGT+CGG 0.601801 1_2:-51459187 Msa0075850:CDS
GCTTGTCGGTGATGTACCAT+GGG 0.605812 1_2:-51459173 Msa0075850:CDS
CAAGTCAACTGGGCATCACA+TGG 0.606051 1_2:+51458203 None:intergenic
GAAGGAAATTGTGAATCCCA+AGG 0.620096 1_2:-51459292 Msa0075850:intron
ATCATACTAACCGAGTCCAA+TGG 0.634399 1_2:+51458839 None:intergenic
TCTTATGCAAGCACACAACA+AGG 0.636965 1_2:+51457959 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAAAATATTTATTTTT+TGG - chr1_2:51458974-51458993 Msa0075850:intron 0.0%
!!! TTAAAAAAATATTTATTTTT+TGG - chr1_2:51458974-51458993 Msa0075850:intron 0.0%
!! AAATTAAATTTATTCTTTCA+TGG + chr1_2:51458582-51458601 None:intergenic 10.0%
!!! TAAATTTAATTTCATAGAAA+TGG - chr1_2:51458590-51458609 Msa0075850:intron 10.0%
!!! AAATTTAATTTCATAGAAAT+GGG - chr1_2:51458591-51458610 Msa0075850:intron 10.0%
!! GTAATGAAATAAATAAAAAA+GGG + chr1_2:51458900-51458919 None:intergenic 10.0%
!! AGTAATGAAATAAATAAAAA+AGG + chr1_2:51458901-51458920 None:intergenic 10.0%
!!! AAAAGATATTTTTATTCTAA+AGG + chr1_2:51459626-51459645 None:intergenic 10.0%
!! AAATTAAATTTATTCTTTCA+TGG + chr1_2:51458582-51458601 None:intergenic 10.0%
!!! TAAATTTAATTTCATAGAAA+TGG - chr1_2:51458590-51458609 Msa0075850:intron 10.0%
!!! AAATTTAATTTCATAGAAAT+GGG - chr1_2:51458591-51458610 Msa0075850:intron 10.0%
!! GTAATGAAATAAATAAAAAA+GGG + chr1_2:51458900-51458919 None:intergenic 10.0%
!! AGTAATGAAATAAATAAAAA+AGG + chr1_2:51458901-51458920 None:intergenic 10.0%
!!! AAAAGATATTTTTATTCTAA+AGG + chr1_2:51459626-51459645 None:intergenic 10.0%
!! TATTATTAATATGTTAGATG+AGG - chr1_2:51458083-51458102 Msa0075850:three_prime_UTR 15.0%
!! ATTATTAATATGTTAGATGA+GGG - chr1_2:51458084-51458103 Msa0075850:three_prime_UTR 15.0%
!! ATTACATACAATAAAATTTG+TGG + chr1_2:51458493-51458512 None:intergenic 15.0%
!! TTAATAGTATGTTCATATAT+TGG - chr1_2:51459247-51459266 Msa0075850:CDS 15.0%
!! TATTATTAATATGTTAGATG+AGG - chr1_2:51458083-51458102 Msa0075850:three_prime_UTR 15.0%
!! ATTATTAATATGTTAGATGA+GGG - chr1_2:51458084-51458103 Msa0075850:three_prime_UTR 15.0%
!! ATTACATACAATAAAATTTG+TGG + chr1_2:51458493-51458512 None:intergenic 15.0%
!! TTAATAGTATGTTCATATAT+TGG - chr1_2:51459247-51459266 Msa0075850:CDS 15.0%
!! ATAGTTAAAAAAATTACCTG+TGG + chr1_2:51458051-51458070 None:intergenic 20.0%
!!! GCAAAATAGTTTTATGAAAA+GGG + chr1_2:51458231-51458250 None:intergenic 20.0%
!!! AGCAAAATAGTTTTATGAAA+AGG + chr1_2:51458232-51458251 None:intergenic 20.0%
!!! TATAATAAATAAGGGTATGT+AGG + chr1_2:51458283-51458302 None:intergenic 20.0%
!!! AAACAAACTATCTCTTTTAA+AGG - chr1_2:51458346-51458365 Msa0075850:intron 20.0%
!!! CCTTATTTATAAGACTTTTT+TGG + chr1_2:51458449-51458468 None:intergenic 20.0%
!!! CCAAAAAAGTCTTATAAATA+AGG - chr1_2:51458446-51458465 Msa0075850:intron 20.0%
!!! AAAAGTCTTATAAATAAGGA+CGG - chr1_2:51458450-51458469 Msa0075850:intron 20.0%
!! GCAATATTAAGACAAAATTA+AGG + chr1_2:51458539-51458558 None:intergenic 20.0%
!!! AATTTTGTCTTAATATTGCA+TGG - chr1_2:51458540-51458559 Msa0075850:intron 20.0%
!! AGATCAATATCAAGTATTAA+TGG - chr1_2:51458656-51458675 Msa0075850:intron 20.0%
!! TTTATGTTGAAATTGATTGA+AGG - chr1_2:51458693-51458712 Msa0075850:intron 20.0%
!! CTCTTAGAAAAAGTTATATA+GGG + chr1_2:51459326-51459345 None:intergenic 20.0%
!! TCTCTTAGAAAAAGTTATAT+AGG + chr1_2:51459327-51459346 None:intergenic 20.0%
!! ACCTATATAACTCATTTATT+TGG - chr1_2:51459445-51459464 Msa0075850:intron 20.0%
!! ACCAAATAAATGAGTTATAT+AGG + chr1_2:51459449-51459468 None:intergenic 20.0%
!!! TTTGGTTCAAACAATTTAAT+TGG - chr1_2:51459463-51459482 Msa0075850:intron 20.0%
!! ATTCAAATGTTTAAAAGTTG+TGG + chr1_2:51459570-51459589 None:intergenic 20.0%
!! ATAGTTAAAAAAATTACCTG+TGG + chr1_2:51458051-51458070 None:intergenic 20.0%
!!! GCAAAATAGTTTTATGAAAA+GGG + chr1_2:51458231-51458250 None:intergenic 20.0%
!!! AGCAAAATAGTTTTATGAAA+AGG + chr1_2:51458232-51458251 None:intergenic 20.0%
!!! TATAATAAATAAGGGTATGT+AGG + chr1_2:51458283-51458302 None:intergenic 20.0%
!!! AAACAAACTATCTCTTTTAA+AGG - chr1_2:51458346-51458365 Msa0075850:intron 20.0%
!!! CCTTATTTATAAGACTTTTT+TGG + chr1_2:51458449-51458468 None:intergenic 20.0%
!!! CCAAAAAAGTCTTATAAATA+AGG - chr1_2:51458446-51458465 Msa0075850:intron 20.0%
!!! AAAAGTCTTATAAATAAGGA+CGG - chr1_2:51458450-51458469 Msa0075850:intron 20.0%
!! GCAATATTAAGACAAAATTA+AGG + chr1_2:51458539-51458558 None:intergenic 20.0%
!!! AATTTTGTCTTAATATTGCA+TGG - chr1_2:51458540-51458559 Msa0075850:intron 20.0%
!! AGATCAATATCAAGTATTAA+TGG - chr1_2:51458656-51458675 Msa0075850:intron 20.0%
!! TTTATGTTGAAATTGATTGA+AGG - chr1_2:51458693-51458712 Msa0075850:intron 20.0%
!! CTCTTAGAAAAAGTTATATA+GGG + chr1_2:51459326-51459345 None:intergenic 20.0%
!! TCTCTTAGAAAAAGTTATAT+AGG + chr1_2:51459327-51459346 None:intergenic 20.0%
!! ACCTATATAACTCATTTATT+TGG - chr1_2:51459445-51459464 Msa0075850:intron 20.0%
!! ACCAAATAAATGAGTTATAT+AGG + chr1_2:51459449-51459468 None:intergenic 20.0%
!!! TTTGGTTCAAACAATTTAAT+TGG - chr1_2:51459463-51459482 Msa0075850:intron 20.0%
!! ATTCAAATGTTTAAAAGTTG+TGG + chr1_2:51459570-51459589 None:intergenic 20.0%
! AAAAAAATTACCTGTGGTAA+AGG + chr1_2:51458045-51458064 None:intergenic 25.0%
! GTATCAAAAAAAATTACGCA+GGG - chr1_2:51458154-51458173 Msa0075850:three_prime_UTR 25.0%
! TATCAAAAAAAATTACGCAG+GGG - chr1_2:51458155-51458174 Msa0075850:three_prime_UTR 25.0%
!! AGTCTTATAATTAAAGACAG+AGG + chr1_2:51458191-51458210 None:intergenic 25.0%
!!! AGACTTTTTTGGTAAAATCA+CGG + chr1_2:51458438-51458457 None:intergenic 25.0%
! TTCGTTAGCTATATATATTG+TGG + chr1_2:51459066-51459085 None:intergenic 25.0%
! ATAGTATGTTCATATATTGG+TGG - chr1_2:51459250-51459269 Msa0075850:CDS 25.0%
! TAGTATGTTCATATATTGGT+GGG - chr1_2:51459251-51459270 Msa0075850:CDS 25.0%
! TCGCTAATAACATAGAATTA+GGG - chr1_2:51459516-51459535 Msa0075850:intron 25.0%
! TGACATTCTAAGCAAAATAA+CGG - chr1_2:51459684-51459703 Msa0075850:intron 25.0%
! TGTGTATGTGTAACATTATA+TGG - chr1_2:51459900-51459919 Msa0075850:intron 25.0%
! TTCTGGTCATAATTTATACT+TGG + chr1_2:51459972-51459991 None:intergenic 25.0%
! AGGAAAATTTAAAGACAACT+TGG + chr1_2:51460129-51460148 None:intergenic 25.0%
! AAAAAAATTACCTGTGGTAA+AGG + chr1_2:51458045-51458064 None:intergenic 25.0%
! GTATCAAAAAAAATTACGCA+GGG - chr1_2:51458154-51458173 Msa0075850:three_prime_UTR 25.0%
! TATCAAAAAAAATTACGCAG+GGG - chr1_2:51458155-51458174 Msa0075850:three_prime_UTR 25.0%
!! AGTCTTATAATTAAAGACAG+AGG + chr1_2:51458191-51458210 None:intergenic 25.0%
!!! AGACTTTTTTGGTAAAATCA+CGG + chr1_2:51458438-51458457 None:intergenic 25.0%
! TTCGTTAGCTATATATATTG+TGG + chr1_2:51459066-51459085 None:intergenic 25.0%
! ATAGTATGTTCATATATTGG+TGG - chr1_2:51459250-51459269 Msa0075850:CDS 25.0%
! TAGTATGTTCATATATTGGT+GGG - chr1_2:51459251-51459270 Msa0075850:CDS 25.0%
! TCGCTAATAACATAGAATTA+GGG - chr1_2:51459516-51459535 Msa0075850:intron 25.0%
! TGACATTCTAAGCAAAATAA+CGG - chr1_2:51459684-51459703 Msa0075850:intron 25.0%
! TGTGTATGTGTAACATTATA+TGG - chr1_2:51459900-51459919 Msa0075850:intron 25.0%
! TTCTGGTCATAATTTATACT+TGG + chr1_2:51459972-51459991 None:intergenic 25.0%
! AGGAAAATTTAAAGACAACT+TGG + chr1_2:51460129-51460148 None:intergenic 25.0%
CTAACTTTCACAAAGCTTAT+TGG + chr1_2:51457930-51457949 None:intergenic 30.0%
! GGTAAAGGAGTTAAACATTT+TGG + chr1_2:51458030-51458049 None:intergenic 30.0%
CGTATCAAAAAAAATTACGC+AGG - chr1_2:51458153-51458172 Msa0075850:three_prime_UTR 30.0%
!!! GACTTTTTTGGTAAAATCAC+GGG + chr1_2:51458437-51458456 None:intergenic 30.0%
! GAATGAGAGTAATAAGTTGA+TGG - chr1_2:51458749-51458768 Msa0075850:intron 30.0%
CATCTTTGTCTTCATAAGTT+GGG + chr1_2:51458800-51458819 None:intergenic 30.0%
CATTCTTCCACTGAATTAAT+TGG - chr1_2:51458868-51458887 Msa0075850:CDS 30.0%
!! TTTATTTTCTTTGTGTCGAC+AGG - chr1_2:51459092-51459111 Msa0075850:intron 30.0%
TTTACGTATCATGAAAGGAA+AGG - chr1_2:51459138-51459157 Msa0075850:intron 30.0%
AGTATGTTCATATATTGGTG+GGG - chr1_2:51459252-51459271 Msa0075850:CDS 30.0%
!!! TCTTTGTTTTGGTGATTAAG+TGG + chr1_2:51459300-51459319 None:intergenic 30.0%
!! ATATAGGGATCTCTTTGTTT+TGG + chr1_2:51459311-51459330 None:intergenic 30.0%
GGTTCAAACAATTTAATTGG+CGG - chr1_2:51459466-51459485 Msa0075850:intron 30.0%
CTCGCTAATAACATAGAATT+AGG - chr1_2:51459515-51459534 Msa0075850:intron 30.0%
CGCTAATAACATAGAATTAG+GGG - chr1_2:51459517-51459536 Msa0075850:intron 30.0%
! TTTAGAGTCATTATCGTTTC+TGG + chr1_2:51459989-51460008 None:intergenic 30.0%
CTAACTTTCACAAAGCTTAT+TGG + chr1_2:51457930-51457949 None:intergenic 30.0%
! GGTAAAGGAGTTAAACATTT+TGG + chr1_2:51458030-51458049 None:intergenic 30.0%
CGTATCAAAAAAAATTACGC+AGG - chr1_2:51458153-51458172 Msa0075850:three_prime_UTR 30.0%
!!! GACTTTTTTGGTAAAATCAC+GGG + chr1_2:51458437-51458456 None:intergenic 30.0%
! GAATGAGAGTAATAAGTTGA+TGG - chr1_2:51458749-51458768 Msa0075850:intron 30.0%
CATCTTTGTCTTCATAAGTT+GGG + chr1_2:51458800-51458819 None:intergenic 30.0%
CATTCTTCCACTGAATTAAT+TGG - chr1_2:51458868-51458887 Msa0075850:CDS 30.0%
!! TTTATTTTCTTTGTGTCGAC+AGG - chr1_2:51459092-51459111 Msa0075850:intron 30.0%
TTTACGTATCATGAAAGGAA+AGG - chr1_2:51459138-51459157 Msa0075850:intron 30.0%
AGTATGTTCATATATTGGTG+GGG - chr1_2:51459252-51459271 Msa0075850:CDS 30.0%
!!! TCTTTGTTTTGGTGATTAAG+TGG + chr1_2:51459300-51459319 None:intergenic 30.0%
!! ATATAGGGATCTCTTTGTTT+TGG + chr1_2:51459311-51459330 None:intergenic 30.0%
GGTTCAAACAATTTAATTGG+CGG - chr1_2:51459466-51459485 Msa0075850:intron 30.0%
CTCGCTAATAACATAGAATT+AGG - chr1_2:51459515-51459534 Msa0075850:intron 30.0%
CGCTAATAACATAGAATTAG+GGG - chr1_2:51459517-51459536 Msa0075850:intron 30.0%
! TTTAGAGTCATTATCGTTTC+TGG + chr1_2:51459989-51460008 None:intergenic 30.0%
! AAGCTTTGTGAAAGTTAGCA+TGG - chr1_2:51457932-51457951 Msa0075850:three_prime_UTR 35.0%
TTTGTGAAAGTTAGCATGGA+TGG - chr1_2:51457936-51457955 Msa0075850:three_prime_UTR 35.0%
ACATCTTGAGGTCTACTTTA+CGG + chr1_2:51457974-51457993 None:intergenic 35.0%
!!! GGAGTTAAACATTTTGGCTA+AGG + chr1_2:51458024-51458043 None:intergenic 35.0%
ATGTTTAACTCCTTTACCAC+AGG - chr1_2:51458032-51458051 Msa0075850:three_prime_UTR 35.0%
AGTGAAAGAGCGAAATGATA+AGG + chr1_2:51458126-51458145 None:intergenic 35.0%
TTAAAGACAGAGGTAGTAGT+TGG + chr1_2:51458181-51458200 None:intergenic 35.0%
CATGAAATCCTTAATGCCTT+GGG + chr1_2:51458730-51458749 None:intergenic 35.0%
TCATGAAATCCTTAATGCCT+TGG + chr1_2:51458731-51458750 None:intergenic 35.0%
! TTCATAAGTTGGGACATAGT+CGG + chr1_2:51458790-51458809 None:intergenic 35.0%
CCATCTTTGTCTTCATAAGT+TGG + chr1_2:51458801-51458820 None:intergenic 35.0%
CCAACTTATGAAGACAAAGA+TGG - chr1_2:51458798-51458817 Msa0075850:intron 35.0%
GAATTGAAAACTTACTCCCA+TGG + chr1_2:51458849-51458868 None:intergenic 35.0%
GTCACTACCAATTAATTCAG+TGG + chr1_2:51458878-51458897 None:intergenic 35.0%
TGAAATTAGTACACGTACTC+AGG + chr1_2:51458947-51458966 None:intergenic 35.0%
AGCTATATATATTGTGGTCG+TGG + chr1_2:51459060-51459079 None:intergenic 35.0%
AAGCGTTTACGTATCATGAA+AGG - chr1_2:51459133-51459152 Msa0075850:intron 35.0%
! AAGCTTTGTGAAAGTTAGCA+TGG - chr1_2:51457932-51457951 Msa0075850:three_prime_UTR 35.0%
TTTGTGAAAGTTAGCATGGA+TGG - chr1_2:51457936-51457955 Msa0075850:three_prime_UTR 35.0%
ACATCTTGAGGTCTACTTTA+CGG + chr1_2:51457974-51457993 None:intergenic 35.0%
!!! GGAGTTAAACATTTTGGCTA+AGG + chr1_2:51458024-51458043 None:intergenic 35.0%
ATGTTTAACTCCTTTACCAC+AGG - chr1_2:51458032-51458051 Msa0075850:three_prime_UTR 35.0%
AGTGAAAGAGCGAAATGATA+AGG + chr1_2:51458126-51458145 None:intergenic 35.0%
TTAAAGACAGAGGTAGTAGT+TGG + chr1_2:51458181-51458200 None:intergenic 35.0%
CATGAAATCCTTAATGCCTT+GGG + chr1_2:51458730-51458749 None:intergenic 35.0%
TCATGAAATCCTTAATGCCT+TGG + chr1_2:51458731-51458750 None:intergenic 35.0%
! TTCATAAGTTGGGACATAGT+CGG + chr1_2:51458790-51458809 None:intergenic 35.0%
CCATCTTTGTCTTCATAAGT+TGG + chr1_2:51458801-51458820 None:intergenic 35.0%
CCAACTTATGAAGACAAAGA+TGG - chr1_2:51458798-51458817 Msa0075850:intron 35.0%
GAATTGAAAACTTACTCCCA+TGG + chr1_2:51458849-51458868 None:intergenic 35.0%
GTCACTACCAATTAATTCAG+TGG + chr1_2:51458878-51458897 None:intergenic 35.0%
TGAAATTAGTACACGTACTC+AGG + chr1_2:51458947-51458966 None:intergenic 35.0%
AGCTATATATATTGTGGTCG+TGG + chr1_2:51459060-51459079 None:intergenic 35.0%
AAGCGTTTACGTATCATGAA+AGG - chr1_2:51459133-51459152 Msa0075850:intron 35.0%
! TGATCCTTCACTGCTCTTTT+GGG + chr1_2:51457877-51457896 None:intergenic 40.0%
GGTAACTCTTGTACATCTTG+AGG + chr1_2:51457986-51458005 None:intergenic 40.0%
CGTGCATGTGAATATACACA+TGG - chr1_2:51458632-51458651 Msa0075850:intron 40.0%
GAAGGAAATTGTGAATCCCA+AGG - chr1_2:51458711-51458730 Msa0075850:intron 40.0%
! TTGTGAATCCCAAGGCATTA+AGG - chr1_2:51458719-51458738 Msa0075850:intron 40.0%
ACGTACTCAGGTGTAATTGT+TGG + chr1_2:51458935-51458954 None:intergenic 40.0%
ATGAAAGGAAAGGAAGCCAT+TGG - chr1_2:51459148-51459167 Msa0075850:intron 40.0%
ATCATACTAACCGAGTCCAA+TGG + chr1_2:51459167-51459186 None:intergenic 40.0%
! TTGCATTTTTCCATGGCTCT+AGG + chr1_2:51459736-51459755 None:intergenic 40.0%
! CCTGTTCTTGCATTTTTCCA+TGG + chr1_2:51459743-51459762 None:intergenic 40.0%
CCATGGAAAAATGCAAGAAC+AGG - chr1_2:51459740-51459759 Msa0075850:intron 40.0%
TAAGCTGCAGCAGAAACATA+TGG - chr1_2:51459839-51459858 Msa0075850:intron 40.0%
TCTTATGCAAGCACACAACA+AGG + chr1_2:51460047-51460066 None:intergenic 40.0%
! TGATCCTTCACTGCTCTTTT+GGG + chr1_2:51457877-51457896 None:intergenic 40.0%
GGTAACTCTTGTACATCTTG+AGG + chr1_2:51457986-51458005 None:intergenic 40.0%
CGTGCATGTGAATATACACA+TGG - chr1_2:51458632-51458651 Msa0075850:intron 40.0%
GAAGGAAATTGTGAATCCCA+AGG - chr1_2:51458711-51458730 Msa0075850:intron 40.0%
! TTGTGAATCCCAAGGCATTA+AGG - chr1_2:51458719-51458738 Msa0075850:intron 40.0%
ACGTACTCAGGTGTAATTGT+TGG + chr1_2:51458935-51458954 None:intergenic 40.0%
ATGAAAGGAAAGGAAGCCAT+TGG - chr1_2:51459148-51459167 Msa0075850:intron 40.0%
ATCATACTAACCGAGTCCAA+TGG + chr1_2:51459167-51459186 None:intergenic 40.0%
! TTGCATTTTTCCATGGCTCT+AGG + chr1_2:51459736-51459755 None:intergenic 40.0%
! CCTGTTCTTGCATTTTTCCA+TGG + chr1_2:51459743-51459762 None:intergenic 40.0%
CCATGGAAAAATGCAAGAAC+AGG - chr1_2:51459740-51459759 Msa0075850:intron 40.0%
TAAGCTGCAGCAGAAACATA+TGG - chr1_2:51459839-51459858 Msa0075850:intron 40.0%
TCTTATGCAAGCACACAACA+AGG + chr1_2:51460047-51460066 None:intergenic 40.0%
! CTGATCCTTCACTGCTCTTT+TGG + chr1_2:51457878-51457897 None:intergenic 45.0%
AGGTCTACTTTACGGAGGTA+AGG + chr1_2:51457966-51457985 None:intergenic 45.0%
TCTTGAGGTCTACTTTACGG+AGG + chr1_2:51457971-51457990 None:intergenic 45.0%
ATGAAGACAAAGATGGCGAC+TGG - chr1_2:51458805-51458824 Msa0075850:intron 45.0%
GTGGTTTCTCTGTCTCAGTA+TGG + chr1_2:51459041-51459060 None:intergenic 45.0%
GGAGACATTATGTGAGACGT+AGG + chr1_2:51459549-51459568 None:intergenic 45.0%
CTTCAGTTGCCAAGTCAACT+GGG + chr1_2:51459813-51459832 None:intergenic 45.0%
! CTGATCCTTCACTGCTCTTT+TGG + chr1_2:51457878-51457897 None:intergenic 45.0%
AGGTCTACTTTACGGAGGTA+AGG + chr1_2:51457966-51457985 None:intergenic 45.0%
TCTTGAGGTCTACTTTACGG+AGG + chr1_2:51457971-51457990 None:intergenic 45.0%
ATGAAGACAAAGATGGCGAC+TGG - chr1_2:51458805-51458824 Msa0075850:intron 45.0%
GTGGTTTCTCTGTCTCAGTA+TGG + chr1_2:51459041-51459060 None:intergenic 45.0%
GGAGACATTATGTGAGACGT+AGG + chr1_2:51459549-51459568 None:intergenic 45.0%
CTTCAGTTGCCAAGTCAACT+GGG + chr1_2:51459813-51459832 None:intergenic 45.0%
!! AAAAAATGTATAATAAATAA+GGG + chr1_2:51458291-51458310 None:intergenic 5.0%
!! AAAAAAATGTATAATAAATA+AGG + chr1_2:51458292-51458311 None:intergenic 5.0%
!! AAAAAATGTATAATAAATAA+GGG + chr1_2:51458291-51458310 None:intergenic 5.0%
!! AAAAAAATGTATAATAAATA+AGG + chr1_2:51458292-51458311 None:intergenic 5.0%
! CTAAGGCATCAGAGAGCTCT+GGG + chr1_2:51458007-51458026 None:intergenic 50.0%
TGCTTGTCGGTGATGTACCA+TGG - chr1_2:51458829-51458848 Msa0075850:intron 50.0%
GCTTGTCGGTGATGTACCAT+GGG - chr1_2:51458830-51458849 Msa0075850:intron 50.0%
GGAAAGGAAGCCATTGGACT+CGG - chr1_2:51459154-51459173 Msa0075850:intron 50.0%
TATGTCAGCACCTAGAGCCA+TGG - chr1_2:51459723-51459742 Msa0075850:intron 50.0%
GCATCACATGGAGCAGGTTA+TGG + chr1_2:51459791-51459810 None:intergenic 50.0%
CAAGTCAACTGGGCATCACA+TGG + chr1_2:51459803-51459822 None:intergenic 50.0%
CATGTGATGCCCAGTTGACT+TGG - chr1_2:51459801-51459820 Msa0075850:intron 50.0%
GCTTCAGTTGCCAAGTCAAC+TGG + chr1_2:51459814-51459833 None:intergenic 50.0%
! CTAAGGCATCAGAGAGCTCT+GGG + chr1_2:51458007-51458026 None:intergenic 50.0%
TGCTTGTCGGTGATGTACCA+TGG - chr1_2:51458829-51458848 Msa0075850:intron 50.0%
GCTTGTCGGTGATGTACCAT+GGG - chr1_2:51458830-51458849 Msa0075850:intron 50.0%
GGAAAGGAAGCCATTGGACT+CGG - chr1_2:51459154-51459173 Msa0075850:intron 50.0%
TATGTCAGCACCTAGAGCCA+TGG - chr1_2:51459723-51459742 Msa0075850:intron 50.0%
GCATCACATGGAGCAGGTTA+TGG + chr1_2:51459791-51459810 None:intergenic 50.0%
CAAGTCAACTGGGCATCACA+TGG + chr1_2:51459803-51459822 None:intergenic 50.0%
CATGTGATGCCCAGTTGACT+TGG - chr1_2:51459801-51459820 Msa0075850:intron 50.0%
GCTTCAGTTGCCAAGTCAAC+TGG + chr1_2:51459814-51459833 None:intergenic 50.0%
GCTGCCCAAAAGAGCAGTGA+AGG - chr1_2:51457870-51457889 Msa0075850:three_prime_UTR 55.0%
! GCTAAGGCATCAGAGAGCTC+TGG + chr1_2:51458008-51458027 None:intergenic 55.0%
GATGGCGACTGGATGCTTGT+CGG - chr1_2:51458816-51458835 Msa0075850:intron 55.0%
TGGCGGTGAAACTCGTCTGA+CGG - chr1_2:51459483-51459502 Msa0075850:intron 55.0%
AACTGGGCATCACATGGAGC+AGG + chr1_2:51459797-51459816 None:intergenic 55.0%
GCTGCCCAAAAGAGCAGTGA+AGG - chr1_2:51457870-51457889 Msa0075850:three_prime_UTR 55.0%
! GCTAAGGCATCAGAGAGCTC+TGG + chr1_2:51458008-51458027 None:intergenic 55.0%
GATGGCGACTGGATGCTTGT+CGG - chr1_2:51458816-51458835 Msa0075850:intron 55.0%
TGGCGGTGAAACTCGTCTGA+CGG - chr1_2:51459483-51459502 Msa0075850:intron 55.0%
AACTGGGCATCACATGGAGC+AGG + chr1_2:51459797-51459816 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 51457864 51460161 51457864 ID=Msa0075850;Name=Msa0075850
chr1_2 mRNA 51457864 51460161 51457864 ID=Msa0075850-mRNA-1;Parent=Msa0075850;Name=Msa0075850-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.66|0.75|1|0.66|0.25|4|393|115
chr1_2 exon 51457864 51458294 51457864 ID=Msa0075850-mRNA-1:exon:15871;Parent=Msa0075850-mRNA-1
chr1_2 exon 51458850 51458911 51458850 ID=Msa0075850-mRNA-1:exon:15870;Parent=Msa0075850-mRNA-1
chr1_2 exon 51459172 51459310 51459172 ID=Msa0075850-mRNA-1:exon:15869;Parent=Msa0075850-mRNA-1
chr1_2 exon 51460053 51460161 51460053 ID=Msa0075850-mRNA-1:exon:15868;Parent=Msa0075850-mRNA-1
chr1_2 CDS 51460053 51460161 51460053 ID=Msa0075850-mRNA-1:cds;Parent=Msa0075850-mRNA-1
chr1_2 CDS 51459172 51459310 51459172 ID=Msa0075850-mRNA-1:cds;Parent=Msa0075850-mRNA-1
chr1_2 CDS 51458850 51458911 51458850 ID=Msa0075850-mRNA-1:cds;Parent=Msa0075850-mRNA-1
chr1_2 CDS 51458257 51458294 51458257 ID=Msa0075850-mRNA-1:cds;Parent=Msa0075850-mRNA-1
chr1_2 three_prime_UTR 51457864 51458256 51457864 ID=Msa0075850-mRNA-1:three_prime_utr;Parent=Msa0075850-mRNA-1
Gene Sequence

>Msa0075850

ATGTTTGCTGCCCAAAAGAGCAGTGAAGGATCAGAAGAAAGTGAAAAGAAGAATAGCACTAATCCAATAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTACCTCCGAAATTGTGAATCCCAAGGCATTAAGGATTTCATGAATGAGAGTAATAAGTTGATGGATCTATTGAACAGCTCCGACTATGTCCCAACTTATGAAGACAAAGATGGCGACTGGATGCTTGTCGGTGATGTACCATGGGAGATGTTTATTGATTCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCCATTGGACTCGCACCTAGAGCCATGGAAAAATGCAAGAACAGGAGCTAG

Protein sequence

>Msa0075850

MFAAQKSSEGSEESEKKNSTNPISFVKVSMDGAPYLRNCESQGIKDFMNESNKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKGKEAIGLAPRAMEKCKNRS*