AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0804840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0804840 MtrunA17_Chr5g0412591 94.497 636 5 1 1 636 1 606 0.0 1220
Msa0804840 MtrunA17_Chr8g0367891 72.144 639 132 10 1 636 1 596 0.0 869
Msa0804840 MtrunA17_Chr4g0076521 48.467 522 223 7 1 521 1 477 1.49e-162 479
Msa0804840 MtrunA17_Chr5g0401341 46.429 560 250 9 1 551 1 519 8.98e-160 473
Msa0804840 MtrunA17_Chr1g0150191 46.869 527 231 10 1 518 1 487 1.16e-152 454
Msa0804840 MtrunA17_Chr1g0207461 42.989 542 269 7 1 537 1 507 3.09e-147 440
Msa0804840 MtrunA17_Chr2g0290741 40.758 633 284 12 1 610 1 565 3.21e-146 436
Msa0804840 MtrunA17_Chr4g0050021 40.037 547 276 9 5 523 23 545 7.81e-127 389
Msa0804840 MtrunA17_Chr2g0279481 39.964 553 275 9 5 523 23 552 2.73e-126 388
Msa0804840 MtrunA17_Chr2g0303541 37.129 606 322 13 1 590 1 563 2.05e-117 364
Msa0804840 MtrunA17_Chr2g0285511 40.226 532 279 9 1 523 1 502 6.99e-114 353
Msa0804840 MtrunA17_Chr1g0181181 38.050 523 284 7 1 523 1 483 5.26e-111 345
Msa0804840 MtrunA17_Chr8g0382231 35.675 541 274 7 16 536 42 528 8.68e-111 346
Msa0804840 MtrunA17_Chr5g0401451 37.244 537 241 10 22 529 36 505 2.21e-108 340
Msa0804840 MtrunA17_Chr8g0374011 38.031 518 266 9 28 517 22 512 2.03e-105 333
Msa0804840 MtrunA17_Chr2g0320691 35.406 579 328 10 24 591 21 564 1.32e-104 330
Msa0804840 MtrunA17_Chr7g0245201 38.124 501 267 9 22 519 57 517 5.53e-102 323
Msa0804840 MtrunA17_Chr1g0199631 39.388 490 252 11 44 523 8 462 8.68e-101 318
Msa0804840 MtrunA17_Chr4g0010091 36.412 563 295 10 22 581 30 532 1.37e-97 311
Msa0804840 MtrunA17_Chr4g0053841 36.400 500 271 7 23 519 10 465 1.91e-93 300
Msa0804840 MtrunA17_Chr1g0195911 37.288 531 271 14 12 525 18 503 2.94e-93 300
Msa0804840 MtrunA17_Chr7g0268781 35.884 588 314 14 12 584 18 557 1.01e-90 294
Msa0804840 MtrunA17_Chr3g0108331 34.449 508 274 8 21 526 19 469 7.19e-87 282
Msa0804840 MtrunA17_Chr5g0432861 33.861 505 282 8 22 524 21 475 3.52e-77 256
Msa0804840 MtrunA17_Chr1g0191711 31.452 496 262 10 27 518 59 480 1.90e-72 243
Msa0804840 MtrunA17_Chr4g0003891 38.188 309 150 4 211 519 46 313 1.12e-65 222
Msa0804840 MtrunA17_Chr2g0332281 39.159 309 149 4 211 519 24 293 2.24e-62 213
Msa0804840 MtrunA17_Chr4g0023801 29.075 454 251 13 74 519 52 442 3.82e-47 174
Msa0804840 MtrunA17_Chr4g0037661 27.447 521 300 12 27 523 4 470 3.58e-46 171
Msa0804840 MtrunA17_Chr1g0163311 26.027 511 280 12 64 541 36 481 1.05e-41 158
Msa0804840 MtrunA17_Chr1g0206621 37.086 151 94 1 33 183 75 224 1.93e-22 96.7
Msa0804840 MtrunA17_Chr2g0280541 25.060 419 246 10 94 505 1 358 5.34e-21 96.3
Msa0804840 MtrunA17_Chr4g0041491 62.712 59 22 0 1 59 1 59 1.50e-19 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0804840 AT1G67900.5 73.023 645 150 11 1 636 1 630 0.0 864
Msa0804840 AT1G67900.1 73.023 645 150 11 1 636 1 630 0.0 864
Msa0804840 AT1G67900.3 73.023 645 150 11 1 636 1 630 0.0 864
Msa0804840 AT1G67900.6 73.023 645 150 11 1 636 1 630 0.0 864
Msa0804840 AT1G67900.2 73.023 645 150 11 1 636 1 630 0.0 864
Msa0804840 AT1G67900.4 73.023 645 150 11 1 636 1 630 0.0 864
Msa0804840 AT3G26490.1 49.238 656 243 15 1 635 1 587 0.0 562
Msa0804840 AT3G26490.3 49.238 656 243 15 1 635 1 587 0.0 562
Msa0804840 AT3G26490.4 49.238 656 243 15 1 635 1 587 0.0 562
Msa0804840 AT3G26490.2 53.061 490 176 13 1 469 1 457 7.88e-161 471
Msa0804840 AT2G14820.2 45.149 536 247 8 1 528 1 497 3.89e-152 453
Msa0804840 AT2G14820.1 45.149 536 247 8 1 528 1 497 3.89e-152 453
Msa0804840 AT5G47800.3 42.964 533 258 7 1 530 1 490 7.53e-147 437
Msa0804840 AT5G47800.1 42.964 533 258 7 1 530 1 490 7.53e-147 437
Msa0804840 AT5G47800.4 42.964 533 258 7 1 530 1 490 7.53e-147 437
Msa0804840 AT5G47800.2 42.964 533 258 7 1 530 114 603 3.57e-145 437
Msa0804840 AT5G67440.3 43.619 525 247 8 1 522 1 479 5.78e-143 428
Msa0804840 AT5G67440.1 43.619 525 247 8 1 522 1 479 5.78e-143 428
Msa0804840 AT4G37590.1 40.336 595 263 12 1 582 1 516 4.81e-141 423
Msa0804840 AT4G31820.1 42.722 529 240 10 1 523 1 472 3.06e-133 403
Msa0804840 AT5G67440.2 43.595 484 225 7 41 522 5 442 5.40e-128 388
Msa0804840 AT2G23050.1 41.588 529 228 11 1 523 1 454 1.58e-127 385
Msa0804840 AT5G64330.2 36.498 611 314 9 7 549 33 637 1.77e-121 375
Msa0804840 AT5G64330.1 35.759 646 333 11 7 584 33 664 2.81e-121 377
Msa0804840 AT4G31820.2 42.017 476 214 9 53 523 1 419 1.22e-116 358
Msa0804840 AT5G64330.3 37.133 579 290 9 39 549 6 578 4.66e-116 359
Msa0804840 AT5G03250.1 37.594 532 297 6 1 523 1 506 1.84e-113 352
Msa0804840 AT1G30440.1 38.692 535 293 9 1 523 1 512 4.69e-113 353
Msa0804840 AT5G13600.1 40.189 530 277 10 1 523 1 497 2.99e-110 344
Msa0804840 AT5G67385.1 38.976 508 258 8 15 519 16 474 7.38e-106 333
Msa0804840 AT5G48800.1 39.053 507 249 9 22 523 37 488 1.87e-98 314
Msa0804840 AT5G67385.4 38.025 476 245 7 47 519 1 429 2.14e-96 307
Msa0804840 AT5G67385.5 38.025 476 245 7 47 519 1 429 2.14e-96 307
Msa0804840 AT5G67385.2 38.025 476 245 7 47 519 1 429 2.14e-96 307
Msa0804840 AT5G67385.3 38.025 476 245 7 47 519 1 429 2.14e-96 307
Msa0804840 AT5G10250.2 34.549 521 258 8 22 519 46 506 1.29e-92 299
Msa0804840 AT3G08570.1 37.255 510 276 11 13 519 22 490 7.35e-92 296
Msa0804840 AT5G66560.1 36.029 544 258 10 28 517 21 528 2.43e-91 297
Msa0804840 AT3G44820.1 33.616 589 331 15 26 591 23 574 1.15e-90 295
Msa0804840 AT1G03010.2 37.972 503 272 12 24 519 7 476 2.24e-90 293
Msa0804840 AT1G03010.1 37.972 503 272 12 24 519 34 503 3.97e-90 293
Msa0804840 AT1G03010.3 37.597 516 280 13 11 519 22 502 4.63e-90 292
Msa0804840 AT5G66560.3 36.023 533 251 10 39 517 3 499 7.82e-90 292
Msa0804840 AT5G66560.4 38.696 460 234 9 70 517 66 489 1.69e-89 291
Msa0804840 AT5G10250.1 34.638 511 256 9 22 519 46 491 2.12e-89 290
Msa0804840 AT2G23050.2 40.436 413 169 8 113 523 1 338 3.04e-87 276
Msa0804840 AT3G49970.1 36.344 465 216 11 39 502 7 392 2.40e-86 279
Msa0804840 AT3G49970.2 36.344 465 216 11 39 502 7 392 2.40e-86 279
Msa0804840 AT3G08660.1 35.000 520 256 12 8 519 21 466 1.17e-83 274
Msa0804840 AT2G47860.1 35.341 498 282 10 24 519 35 494 4.97e-81 268
Msa0804840 AT2G30520.1 32.604 503 285 9 21 523 25 473 4.09e-79 262
Msa0804840 AT3G50840.1 34.921 504 276 8 28 529 18 471 5.38e-78 259
Msa0804840 AT5G03250.2 36.190 420 233 6 113 523 1 394 1.60e-76 252
Msa0804840 AT2G47860.3 33.460 526 277 11 24 519 35 517 6.46e-76 256
Msa0804840 AT3G08660.3 35.076 459 224 10 69 519 14 406 1.26e-73 246
Msa0804840 AT2G30520.2 33.260 454 251 8 70 523 24 425 8.39e-73 244
Msa0804840 AT2G30520.3 33.260 454 251 8 70 523 24 425 8.39e-73 244
Msa0804840 AT3G50840.2 34.227 485 267 8 47 529 1 435 2.19e-71 240
Msa0804840 AT3G50840.3 34.227 485 267 8 47 529 1 435 2.19e-71 240
Msa0804840 AT5G66560.2 32.665 499 240 10 28 469 21 480 5.30e-65 222
Msa0804840 AT1G52770.1 39.677 310 152 4 211 519 28 303 3.87e-64 219
Msa0804840 AT3G08660.2 31.770 469 242 12 8 470 21 417 3.72e-61 210
Msa0804840 AT3G15570.1 37.705 305 151 4 220 519 38 308 4.52e-59 205
Msa0804840 AT2G47860.4 32.662 447 261 10 24 468 35 443 1.39e-57 201
Msa0804840 AT2G47860.5 33.092 414 232 9 113 519 1 376 1.80e-54 194
Msa0804840 AT2G47860.2 33.092 414 232 9 113 519 1 376 1.80e-54 194
Msa0804840 AT2G47860.6 30.998 471 262 11 24 469 35 467 7.74e-53 188
Msa0804840 AT3G19850.1 26.105 475 263 8 69 517 51 463 9.17e-49 179
Msa0804840 AT5G48130.1 25.828 453 270 9 70 517 76 467 9.43e-42 160
Msa0804840 AT3G03510.1 30.000 450 207 12 82 519 8 361 1.41e-41 157
Msa0804840 AT1G50280.2 24.353 464 277 8 70 513 18 427 1.33e-39 152
Msa0804840 AT1G50280.1 24.353 464 277 8 70 513 51 460 1.84e-39 152
Msa0804840 AT5G17580.2 27.567 526 311 11 8 526 2 464 2.24e-38 150
Msa0804840 AT5G17580.1 27.734 512 300 11 22 526 1 449 5.89e-38 148
Msa0804840 AT3G22104.1 25.773 485 278 14 28 502 6 418 1.18e-31 129
Msa0804840 AT3G22104.4 25.182 413 230 10 98 502 2 343 1.39e-22 101
Msa0804840 AT3G22104.2 25.182 413 230 10 98 502 2 343 1.39e-22 101
Msa0804840 AT3G22104.3 25.182 413 230 10 98 502 2 343 1.39e-22 101

Find 144 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTAGCATAGACCTTTAT+TGG 0.142674 5_3:+21021631 Msa0804840:CDS
GAGGATAATTGGAGTGTTTC+TGG 0.144528 5_3:+21023737 Msa0804840:CDS
CTTCTTTCTATTTCCGTTCT+TGG 0.164934 5_3:-21021751 None:intergenic
CTTTCACTCTTGTTGAGTTC+TGG 0.171118 5_3:-21023464 None:intergenic
CTCAAAATTATTATTATTAT+AGG 0.177140 5_3:-21024119 None:intergenic
TTTCCGTTCTTGGAAATATT+TGG 0.180699 5_3:-21021741 None:intergenic
CATGATGAATTTGATGAAAA+TGG 0.208213 5_3:+21023815 Msa0804840:CDS
AATCAGGAAGTTGAACTATT+TGG 0.235212 5_3:-21021182 None:intergenic
ACTTGAACAACAACTCTTAA+TGG 0.251309 5_3:-21023566 None:intergenic
AAGCAAAGATAGAATTTCTT+TGG 0.270418 5_3:-21020278 None:intergenic
TCCAAGTTTCATAAACTTCA+TGG 0.285144 5_3:-21020568 None:intergenic
AGAGTTGAAGACTTTGATTT+TGG 0.291628 5_3:-21023770 None:intergenic
TTTCAACTTCTTCAGTCATT+TGG 0.299710 5_3:-21021314 None:intergenic
AGCTTGCTTCCAACTGAAAA+AGG 0.300589 5_3:+21021861 Msa0804840:CDS
TGATCATATCTTGCAAATTC+TGG 0.304119 5_3:-21022326 None:intergenic
GTATTCAAGGTGAGGATAAT+TGG 0.310231 5_3:+21023726 Msa0804840:CDS
TGAAGAAGCATTGAGAATAT+TGG 0.313880 5_3:-21021925 None:intergenic
GTAGACAAATACAGCAATAT+TGG 0.314454 5_3:-21024228 None:intergenic
GATATAGGAATAGGAATCTT+TGG 0.321567 5_3:+21024184 Msa0804840:three_prime_UTR
ATGACTGAAGAAGTTGAAAA+AGG 0.332313 5_3:+21021318 Msa0804840:CDS
TCTACACTTCAGAAGCTATA+AGG 0.334248 5_3:+21020607 Msa0804840:CDS
CTATCATTGTTCTCCAATAA+AGG 0.335482 5_3:-21021644 None:intergenic
TGAAAATTTATGCATCTAGA+TGG 0.337434 5_3:+21021715 Msa0804840:CDS
ATAATAATAGTAGCTTAAAT+AGG 0.340948 5_3:-21020187 None:intergenic
TCTGAAGTGTAGAAAGTATC+TGG 0.344925 5_3:-21020597 None:intergenic
GCCATGAAGTTTATGAAACT+TGG 0.345527 5_3:+21020567 Msa0804840:exon
TAAAATGTCAAAATCACTTA+AGG 0.350973 5_3:+21020080 Msa0804840:five_prime_UTR
CCACAAAGGCGTTGCATTTG+TGG 0.361175 5_3:+21021421 Msa0804840:CDS
AATCAAAGTCTTCAACTCTA+AGG 0.362689 5_3:+21023774 Msa0804840:CDS
TCCACTCCACCCGGAAAATC+AGG 0.369267 5_3:-21021198 None:intergenic
TGTGGTCTGAAGACTTACTA+TGG 0.375499 5_3:-21021403 None:intergenic
TGTGACAAACTCACCTTTGT+AGG 0.375606 5_3:-21021507 None:intergenic
TTCAAAGCATAGGCTGCTAT+TGG 0.379331 5_3:+21021827 Msa0804840:CDS
TGAAAGAAGGCGGTCACGTT+CGG 0.382002 5_3:+21022142 Msa0804840:CDS
TCTTTGCAGGCATAAGCATT+TGG 0.386345 5_3:-21021124 None:intergenic
TTGGTAAATGATGATGGAAT+TGG 0.390964 5_3:+21023839 Msa0804840:CDS
ATTCTGAGCATAATCTTTGC+AGG 0.392741 5_3:-21021137 None:intergenic
TGAAAAGTTGATATAGGAAT+AGG 0.392978 5_3:+21024175 Msa0804840:three_prime_UTR
CCACAAATGCAACGCCTTTG+TGG 0.394661 5_3:-21021421 None:intergenic
GGTAGGATAGATGACATTAA+TGG 0.395779 5_3:-21020166 None:intergenic
CTTGAACAACAACTCTTAAT+GGG 0.398186 5_3:-21023565 None:intergenic
AATCTCTTGCAACTTCTTGA+AGG 0.403320 5_3:-21022259 None:intergenic
TGTTTGTAAGGGTAATTTAG+AGG 0.403451 5_3:+21023994 Msa0804840:three_prime_UTR
ATAATAAATATTATTCATCT+TGG 0.413828 5_3:+21020416 Msa0804840:five_prime_UTR
TTACTATCTGTAAGGTGCAC+TGG 0.417772 5_3:+21020463 Msa0804840:five_prime_UTR
TGAGTTGGTGATGACTATAT+TGG 0.420160 5_3:+21022058 Msa0804840:CDS
GTTATAACTATTTGACTGAA+TGG 0.421950 5_3:+21020102 Msa0804840:five_prime_UTR
GTGATCTCATAATTCAAGTA+AGG 0.425248 5_3:+21020756 Msa0804840:CDS
TGCTTCTTCATCTTCAAAGA+TGG 0.426814 5_3:+21021938 Msa0804840:CDS
GTGTCATGAAAAGTTGATAT+AGG 0.426871 5_3:+21024169 Msa0804840:three_prime_UTR
TTTCTTTGGTGGAGAGAAGA+AGG 0.431216 5_3:-21020264 None:intergenic
TTGGTGTCAGTGACAAATCA+TGG 0.436046 5_3:+21024203 Msa0804840:three_prime_UTR
ATGAGAGGCTTTGTAGTTGT+AGG 0.437942 5_3:-21020217 None:intergenic
TTACCACATGATTTAGAAGA+AGG 0.446174 5_3:+21020531 Msa0804840:five_prime_UTR
AGCTCTACTACAAGTATTCA+AGG 0.447165 5_3:+21023713 Msa0804840:CDS
GGCATAAGCATTTGGATAGC+AGG 0.447706 5_3:-21021116 None:intergenic
GCATCACCAATGAGATTTGA+AGG 0.447840 5_3:-21021690 None:intergenic
TTGTGTAGGAAGAGCACAAA+TGG 0.459576 5_3:-21023882 None:intergenic
TGAATTTGATGAAAATGGTT+TGG 0.459746 5_3:+21023820 Msa0804840:CDS
CAAGCTAGAGCAGCATCATC+TGG 0.460416 5_3:+21023602 Msa0804840:CDS
TACCTTGAGATAAATGTCAA+TGG 0.464242 5_3:-21022366 None:intergenic
ACAATGATAGCAATCAAATC+TGG 0.464906 5_3:+21021657 Msa0804840:CDS
AACGATCTCGGAGGGCTAGT+TGG 0.466201 5_3:-21022110 None:intergenic
AAGGTTCCTTCAAATCTCAT+TGG 0.467784 5_3:+21021684 Msa0804840:CDS
TTCAATTCTTGCATCCTCCA+TGG 0.467888 5_3:+21021369 Msa0804840:CDS
TCAAAAGTCTTCAACGATCT+CGG 0.468557 5_3:-21022122 None:intergenic
GCATTTGTGGTCTGAAGACT+TGG 0.469383 5_3:+21021434 Msa0804840:CDS
ACTTTGAATTACAAGAAAGT+AGG 0.470597 5_3:+21022177 Msa0804840:CDS
ATTTGGTGATGAGATGAATC+AGG 0.473504 5_3:-21021165 None:intergenic
ATGCTTTGAAGTTATTTCGC+TGG 0.473982 5_3:-21021814 None:intergenic
CAGTGTTCTCAGAGTGTATG+AGG 0.475956 5_3:-21020350 None:intergenic
GAAAGTTTGAGAATCAAATC+AGG 0.487700 5_3:+21021576 Msa0804840:CDS
CAAAGATAGAATTTCTTTGG+TGG 0.488846 5_3:-21020275 None:intergenic
AAGAAGGGTAGGACTTCAAT+TGG 0.492020 5_3:+21021968 Msa0804840:CDS
AGAATCAAATCAGGAAGTAA+AGG 0.499839 5_3:+21021585 Msa0804840:CDS
TGACTGAATGGACATAACTT+AGG 0.499955 5_3:+21020114 Msa0804840:five_prime_UTR
TTGGAACAGTTCATGTTACA+AGG 0.510924 5_3:+21022077 Msa0804840:CDS
AATGGTTTGGTAAATGATGA+TGG 0.512979 5_3:+21023833 Msa0804840:CDS
ATTCTTGCATCCTCCATGGT+TGG 0.519380 5_3:+21021373 Msa0804840:CDS
TAATAGTAGCTTAAATAGGT+AGG 0.525517 5_3:-21020183 None:intergenic
TTGAATTACAAGAAAGTAGG+AGG 0.526848 5_3:+21022180 Msa0804840:CDS
ATTGAAAGTGGCAAAACTTG+TGG 0.529222 5_3:+21022229 Msa0804840:CDS
GCGAAATAACTTCAAAGCAT+AGG 0.531559 5_3:+21021817 Msa0804840:CDS
TGGTGTCAGTGACAAATCAT+GGG 0.535315 5_3:+21024204 Msa0804840:three_prime_UTR
CTTGCAGCTACAATGTTGTA+AGG 0.538418 5_3:-21021273 None:intergenic
GCATAAGCATTTGGATAGCA+GGG 0.539705 5_3:-21021115 None:intergenic
AATAGTTTCAATGCATCTGC+TGG 0.540399 5_3:-21021463 None:intergenic
TTGCATCCTCCATGGTTGGA+AGG 0.541728 5_3:+21021377 Msa0804840:CDS
ACATAGTTCAAAATTGAAAG+TGG 0.541920 5_3:+21022217 Msa0804840:CDS
GTTTGTAAGGGTAATTTAGA+GGG 0.542040 5_3:+21023995 Msa0804840:three_prime_UTR
AGCCATTGACATTTATCTCA+AGG 0.550508 5_3:+21022364 Msa0804840:CDS
TGATCTCATAATTCAAGTAA+GGG 0.550839 5_3:+21020757 Msa0804840:CDS
ATTTGCTAAGCAAGCTCAAG+TGG 0.550891 5_3:-21020395 None:intergenic
AATGGAAGCGTGCATGCATG+CGG 0.551671 5_3:+21023526 Msa0804840:CDS
GTGACAAACTCACCTTTGTA+GGG 0.551753 5_3:-21021506 None:intergenic
TTGTGTGCTAAGTTCTGCTA+TGG 0.551870 5_3:+21021231 Msa0804840:CDS
CAAAGATGGAATTAGCAAGA+AGG 0.552149 5_3:+21021952 Msa0804840:CDS
AAACTTGATTCACAAGCTTG+AGG 0.555629 5_3:+21021341 Msa0804840:CDS
AAAGATGGAATTAGCAAGAA+GGG 0.557589 5_3:+21021953 Msa0804840:CDS
TTACCAAATATTTCCAAGAA+CGG 0.560310 5_3:+21021738 Msa0804840:CDS
CAGAACTCAACAAGAGTGAA+AGG 0.560948 5_3:+21023465 Msa0804840:CDS
GATCTCGGAGGGCTAGTTGG+TGG 0.563074 5_3:-21022107 None:intergenic
TGAACTATGTGATGCTGAAG+AGG 0.563744 5_3:-21022204 None:intergenic
TTACCTTCTTCTAAATCATG+TGG 0.568583 5_3:-21020534 None:intergenic
CATACATTAAAAGATTCTTG+TGG 0.570521 5_3:-21024080 None:intergenic
TATATAATTTGCAAGAGGAA+AGG 0.570984 5_3:-21020241 None:intergenic
TCAAATGCTTCCACTCCACC+CGG 0.574131 5_3:-21021207 None:intergenic
AAGTGGCAAAACTTGTGGAT+AGG 0.577058 5_3:+21022234 Msa0804840:CDS
GAAGGTATATAATTTGCAAG+AGG 0.578392 5_3:-21020246 None:intergenic
ATCAGGAAGTAAAGGATGGT+GGG 0.580568 5_3:+21021593 Msa0804840:CDS
ATGGAATTAGCAAGAAGGGT+AGG 0.583335 5_3:+21021957 Msa0804840:CDS
CTATGGTATCCTTCCAACCA+TGG 0.584707 5_3:-21021386 None:intergenic
AGCAATCAAATCTGGTGGCA+AGG 0.587341 5_3:+21021665 Msa0804840:CDS
GTCTGAGTCTAACTCAGACT+CGG 0.598165 5_3:+21021791 Msa0804840:CDS
AATCAGGAAGTAAAGGATGG+TGG 0.603373 5_3:+21021592 Msa0804840:CDS
TACTACAAGTATTCAAGGTG+AGG 0.607107 5_3:+21023718 Msa0804840:CDS
TCTACACTGAATTATGCAAG+TGG 0.608488 5_3:+21020497 Msa0804840:five_prime_UTR
AAGGGTAGGACTTCAATTGG+AGG 0.609288 5_3:+21021971 Msa0804840:CDS
AGTCTTGAGCCACCCTACAA+AGG 0.609787 5_3:+21021494 Msa0804840:CDS
TCAAATCAGGAAGTAAAGGA+TGG 0.616909 5_3:+21021589 Msa0804840:CDS
CATTTGTGGTCTGAAGACTT+GGG 0.618302 5_3:+21021435 Msa0804840:CDS
TACAGTCTATGATGTTGAGT+TGG 0.618402 5_3:+21022043 Msa0804840:CDS
TAGTCATTCTAGAAGAGTGA+GGG 0.621645 5_3:+21021530 Msa0804840:CDS
AAGTCTTCAACGATCTCGGA+GGG 0.622487 5_3:-21022118 None:intergenic
ATGATAGCAATCAAATCTGG+TGG 0.634663 5_3:+21021660 Msa0804840:CDS
TGCAAGAGGAAAGGTATGAG+AGG 0.635594 5_3:-21020232 None:intergenic
ATACACTCTGAGAACACTGT+GGG 0.637700 5_3:+21020354 Msa0804840:five_prime_UTR
GCTAGAGCAGCATCATCTGG+TGG 0.637791 5_3:+21023605 Msa0804840:CDS
GATCTCATAATTCAAGTAAG+GGG 0.642036 5_3:+21020758 Msa0804840:CDS
GTCTGAGTTAGACTCAGACT+CGG 0.643618 5_3:-21021787 None:intergenic
AAAGCATTGCTTACAACACA+TGG 0.648620 5_3:+21023656 Msa0804840:CDS
ATAGTCATTCTAGAAGAGTG+AGG 0.652722 5_3:+21021529 Msa0804840:CDS
CATAAGCATTTGGATAGCAG+GGG 0.668690 5_3:-21021114 None:intergenic
AAAGTCTTCAACGATCTCGG+AGG 0.669614 5_3:-21022119 None:intergenic
ACAAACTCACCTTTGTAGGG+TGG 0.674969 5_3:-21021503 None:intergenic
TCATTTGTATAAGAAAGTGA+AGG 0.677583 5_3:-21022020 None:intergenic
TCTAAGGATGAAGCTAGCTG+AGG 0.678811 5_3:+21023790 Msa0804840:CDS
AAGTAGATATCTTCTTCACA+AGG 0.678976 5_3:+21020781 Msa0804840:CDS
GGTGTCAGTGACAAATCATG+GGG 0.687341 5_3:+21024205 Msa0804840:three_prime_UTR
TGGTATCCTTCCAACCATGG+AGG 0.717381 5_3:-21021383 None:intergenic
TGGTGATGAGATGAATCAGG+AGG 0.725233 5_3:-21021162 None:intergenic
AGTAAGTCTTCAGACCACAA+AGG 0.726529 5_3:+21021407 Msa0804840:CDS
CATACACTCTGAGAACACTG+TGG 0.742505 5_3:+21020353 Msa0804840:five_prime_UTR
TATTAATAGATCATTCACTG+TGG 0.782652 5_3:-21021997 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAATATTATTCATCT+TGG + chr5_3:21020416-21020435 Msa0804840:five_prime_UTR 10.0%
!! AAAAAATTATATACTTATGA+AGG - chr5_3:21021050-21021069 None:intergenic 10.0%
!!! AAGTATATAATTTTTTACTT+TGG + chr5_3:21021054-21021073 Msa0804840:intron 10.0%
!!! AAATACAATAAACATTTTAT+AGG - chr5_3:21022401-21022420 None:intergenic 10.0%
!!! AGGTTTTTTTATTTTTATTT+TGG + chr5_3:21023020-21023039 Msa0804840:intron 10.0%
!!! TTAATTTAAGTTTTTTTTCA+AGG + chr5_3:21023062-21023081 Msa0804840:intron 10.0%
!! ATTAACTTATTATAATGATT+TGG + chr5_3:21023208-21023227 Msa0804840:intron 10.0%
!! CTCAAAATTATTATTATTAT+AGG - chr5_3:21024122-21024141 None:intergenic 10.0%
!!! CTATAATAATAATAATTTTG+AGG + chr5_3:21024120-21024139 Msa0804840:three_prime_UTR 10.0%
!! ATAATAATAGTAGCTTAAAT+AGG - chr5_3:21020190-21020209 None:intergenic 15.0%
!!! ATTTTTATCAAGGTATAAAA+TGG - chr5_3:21022437-21022456 None:intergenic 15.0%
!!! TTGAATAAGACAATATTTTA+AGG - chr5_3:21022712-21022731 None:intergenic 15.0%
!! ATACTTAAAAGATTTCTTAA+CGG + chr5_3:21023328-21023347 Msa0804840:intron 15.0%
!!! AATTTACTAAGCATTTTTTT+AGG - chr5_3:21023908-21023927 None:intergenic 15.0%
!! TAAAATGTCAAAATCACTTA+AGG + chr5_3:21020080-21020099 Msa0804840:five_prime_UTR 20.0%
!!! ATTTTCTTTTACTATCTGTA+AGG + chr5_3:21020455-21020474 Msa0804840:five_prime_UTR 20.0%
!! CAAAATTAAACAATCCAATA+AGG - chr5_3:21020683-21020702 None:intergenic 20.0%
!!! TCTGAGATATATTTTTATCA+AGG - chr5_3:21022447-21022466 None:intergenic 20.0%
!! TGATAAAAATATATCTCAGA+TGG + chr5_3:21022447-21022466 Msa0804840:intron 20.0%
!! AAACATGTAAAGAAAAAAAG+TGG + chr5_3:21022613-21022632 Msa0804840:intron 20.0%
!!! ATACTTCACTTTCAAATTTT+AGG + chr5_3:21022649-21022668 Msa0804840:intron 20.0%
!!! TTGTCTTATTCAACATTTAT+TGG + chr5_3:21022719-21022738 Msa0804840:intron 20.0%
!! TTATAGAGTGAATTCATAAA+TGG - chr5_3:21022975-21022994 None:intergenic 20.0%
!! AGTTCTATATTAATTGAACA+TGG - chr5_3:21023149-21023168 None:intergenic 20.0%
!!! TTTCTTAATTTGAAATATGC+AGG + chr5_3:21023436-21023455 Msa0804840:intron 20.0%
!! AAAAAATGCTTAGTAAATTG+TGG + chr5_3:21023909-21023928 Msa0804840:CDS 20.0%
!!! TTAGTTTTTTCATGTTTGTA+AGG + chr5_3:21023982-21024001 Msa0804840:three_prime_UTR 20.0%
!!! TAGTTTTTTCATGTTTGTAA+GGG + chr5_3:21023983-21024002 Msa0804840:three_prime_UTR 20.0%
! GTTATAACTATTTGACTGAA+TGG + chr5_3:21020102-21020121 Msa0804840:five_prime_UTR 25.0%
! TAATAGTAGCTTAAATAGGT+AGG - chr5_3:21020186-21020205 None:intergenic 25.0%
!! TATATAATTTGCAAGAGGAA+AGG - chr5_3:21020244-21020263 None:intergenic 25.0%
! AAGCAAAGATAGAATTTCTT+TGG - chr5_3:21020281-21020300 None:intergenic 25.0%
! TGATCTCATAATTCAAGTAA+GGG + chr5_3:21020757-21020776 Msa0804840:CDS 25.0%
! ACTAATATGACACATTGATA+CGG - chr5_3:21020979-21020998 None:intergenic 25.0%
! TGAAAATTTATGCATCTAGA+TGG + chr5_3:21021715-21021734 Msa0804840:CDS 25.0%
! TTACCAAATATTTCCAAGAA+CGG + chr5_3:21021738-21021757 Msa0804840:CDS 25.0%
! TATTAATAGATCATTCACTG+TGG - chr5_3:21022000-21022019 None:intergenic 25.0%
! TCATTTGTATAAGAAAGTGA+AGG - chr5_3:21022023-21022042 None:intergenic 25.0%
! ACTTTGAATTACAAGAAAGT+AGG + chr5_3:21022177-21022196 Msa0804840:CDS 25.0%
! ACATAGTTCAAAATTGAAAG+TGG + chr5_3:21022217-21022236 Msa0804840:CDS 25.0%
!!! TATGTGTGTTTTTTCTTTAC+AGG - chr5_3:21022591-21022610 None:intergenic 25.0%
! TTCAACATTTATTGGAAGTT+AGG + chr5_3:21022727-21022746 Msa0804840:intron 25.0%
! CAACTATATCAGTCAAATTA+AGG - chr5_3:21022791-21022810 None:intergenic 25.0%
! TTGTGATTTCATAACTCATT+TGG + chr5_3:21022829-21022848 Msa0804840:intron 25.0%
!!! AAAGAAAATTTTCTAGCATG+AGG + chr5_3:21023181-21023200 Msa0804840:intron 25.0%
! AAAATAACGAGCTTGAAATA+TGG - chr5_3:21023308-21023327 None:intergenic 25.0%
! CATGATGAATTTGATGAAAA+TGG + chr5_3:21023815-21023834 Msa0804840:CDS 25.0%
! TGAATTTGATGAAAATGGTT+TGG + chr5_3:21023820-21023839 Msa0804840:CDS 25.0%
! CATACATTAAAAGATTCTTG+TGG - chr5_3:21024083-21024102 None:intergenic 25.0%
!! AATCTTTTAATGTATGTGCA+TGG + chr5_3:21024087-21024106 Msa0804840:three_prime_UTR 25.0%
!!! TGAAAAGTTGATATAGGAAT+AGG + chr5_3:21024175-21024194 Msa0804840:three_prime_UTR 25.0%
! GAAGGTATATAATTTGCAAG+AGG - chr5_3:21020249-21020268 None:intergenic 30.0%
CAAAGATAGAATTTCTTTGG+TGG - chr5_3:21020278-21020297 None:intergenic 30.0%
TTACCACATGATTTAGAAGA+AGG + chr5_3:21020531-21020550 Msa0804840:five_prime_UTR 30.0%
TTACCTTCTTCTAAATCATG+TGG - chr5_3:21020537-21020556 None:intergenic 30.0%
TCCAAGTTTCATAAACTTCA+TGG - chr5_3:21020571-21020590 None:intergenic 30.0%
! GTTCTTTTCTTTGTATATGC+AGG + chr5_3:21020711-21020730 Msa0804840:intron 30.0%
GTGATCTCATAATTCAAGTA+AGG + chr5_3:21020756-21020775 Msa0804840:CDS 30.0%
GATCTCATAATTCAAGTAAG+GGG + chr5_3:21020758-21020777 Msa0804840:CDS 30.0%
AAGTAGATATCTTCTTCACA+AGG + chr5_3:21020781-21020800 Msa0804840:CDS 30.0%
!! TGTCATATTAGTGTTGTTTC+TGG + chr5_3:21020987-21021006 Msa0804840:intron 30.0%
CACAAACACAAATACAAACA+CGG - chr5_3:21021016-21021035 None:intergenic 30.0%
AATCAGGAAGTTGAACTATT+TGG - chr5_3:21021185-21021204 None:intergenic 30.0%
TTTCAACTTCTTCAGTCATT+TGG - chr5_3:21021317-21021336 None:intergenic 30.0%
ATGACTGAAGAAGTTGAAAA+AGG + chr5_3:21021318-21021337 Msa0804840:CDS 30.0%
GAAAGTTTGAGAATCAAATC+AGG + chr5_3:21021576-21021595 Msa0804840:CDS 30.0%
AGAATCAAATCAGGAAGTAA+AGG + chr5_3:21021585-21021604 Msa0804840:CDS 30.0%
AACTTAGCATAGACCTTTAT+TGG + chr5_3:21021631-21021650 Msa0804840:CDS 30.0%
CTATCATTGTTCTCCAATAA+AGG - chr5_3:21021647-21021666 None:intergenic 30.0%
ACAATGATAGCAATCAAATC+TGG + chr5_3:21021657-21021676 Msa0804840:CDS 30.0%
TTTCCGTTCTTGGAAATATT+TGG - chr5_3:21021744-21021763 None:intergenic 30.0%
!! TGAAGAAGCATTGAGAATAT+TGG - chr5_3:21021928-21021947 None:intergenic 30.0%
AAAGATGGAATTAGCAAGAA+GGG + chr5_3:21021953-21021972 Msa0804840:CDS 30.0%
TTGAATTACAAGAAAGTAGG+AGG + chr5_3:21022180-21022199 Msa0804840:CDS 30.0%
TGATCATATCTTGCAAATTC+TGG - chr5_3:21022329-21022348 None:intergenic 30.0%
TACCTTGAGATAAATGTCAA+TGG - chr5_3:21022369-21022388 None:intergenic 30.0%
TTAATTGAAGGGATTAAGCA+CGG - chr5_3:21022525-21022544 None:intergenic 30.0%
!!! TATTTTAAGGTCAAGAGAGT+TGG - chr5_3:21022699-21022718 None:intergenic 30.0%
!! TAACATGTACTTTCAAGTTC+AGG + chr5_3:21023000-21023019 Msa0804840:intron 30.0%
ATTAATTGAACATGGTAGCT+CGG - chr5_3:21023141-21023160 None:intergenic 30.0%
CTTGAACAACAACTCTTAAT+GGG - chr5_3:21023568-21023587 None:intergenic 30.0%
ACTTGAACAACAACTCTTAA+TGG - chr5_3:21023569-21023588 None:intergenic 30.0%
!! TGTGTTGTTGTATGTTTTGA+TGG - chr5_3:21023689-21023708 None:intergenic 30.0%
!! AGAGTTGAAGACTTTGATTT+TGG - chr5_3:21023773-21023792 None:intergenic 30.0%
AATCAAAGTCTTCAACTCTA+AGG + chr5_3:21023774-21023793 Msa0804840:CDS 30.0%
!! AATGGTTTGGTAAATGATGA+TGG + chr5_3:21023833-21023852 Msa0804840:CDS 30.0%
!! TTGGTAAATGATGATGGAAT+TGG + chr5_3:21023839-21023858 Msa0804840:CDS 30.0%
!!! AGCATTTTTTTAGGTTGTGT+AGG - chr5_3:21023899-21023918 None:intergenic 30.0%
TGTTTGTAAGGGTAATTTAG+AGG + chr5_3:21023994-21024013 Msa0804840:three_prime_UTR 30.0%
GTTTGTAAGGGTAATTTAGA+GGG + chr5_3:21023995-21024014 Msa0804840:three_prime_UTR 30.0%
!! ATTTTGAGGGAAAATCTCTT+TGG + chr5_3:21024134-21024153 Msa0804840:three_prime_UTR 30.0%
!! GTGTCATGAAAAGTTGATAT+AGG + chr5_3:21024169-21024188 Msa0804840:three_prime_UTR 30.0%
GATATAGGAATAGGAATCTT+TGG + chr5_3:21024184-21024203 Msa0804840:three_prime_UTR 30.0%
GTAGACAAATACAGCAATAT+TGG - chr5_3:21024231-21024250 None:intergenic 30.0%
! AATTCGTATTTTCATGTGTC+TGG + chr5_3:21024281-21024300 Msa0804840:three_prime_UTR 30.0%
TGACTGAATGGACATAACTT+AGG + chr5_3:21020114-21020133 Msa0804840:five_prime_UTR 35.0%
GGTAGGATAGATGACATTAA+TGG - chr5_3:21020169-21020188 None:intergenic 35.0%
TCTACACTGAATTATGCAAG+TGG + chr5_3:21020497-21020516 Msa0804840:five_prime_UTR 35.0%
GCCATGAAGTTTATGAAACT+TGG + chr5_3:21020567-21020586 Msa0804840:exon 35.0%
!! TCTGAAGTGTAGAAAGTATC+TGG - chr5_3:21020600-21020619 None:intergenic 35.0%
TCTACACTTCAGAAGCTATA+AGG + chr5_3:21020607-21020626 Msa0804840:CDS 35.0%
!! TTGATGATGCATCTCCTTAT+TGG + chr5_3:21020666-21020685 Msa0804840:intron 35.0%
ACGTATTGTTACATTTGGGA+AGG + chr5_3:21020930-21020949 Msa0804840:intron 35.0%
ATTTGTGTTTGTGTCTGTGT+CGG + chr5_3:21021023-21021042 Msa0804840:intron 35.0%
ATTCTGAGCATAATCTTTGC+AGG - chr5_3:21021140-21021159 None:intergenic 35.0%
!! ATTTGGTGATGAGATGAATC+AGG - chr5_3:21021168-21021187 None:intergenic 35.0%
! AGTTCAACTTCCTGATTTTC+CGG + chr5_3:21021188-21021207 Msa0804840:CDS 35.0%
AAACTTGATTCACAAGCTTG+AGG + chr5_3:21021341-21021360 Msa0804840:CDS 35.0%
AATAGTTTCAATGCATCTGC+TGG - chr5_3:21021466-21021485 None:intergenic 35.0%
! ATAGTCATTCTAGAAGAGTG+AGG + chr5_3:21021529-21021548 Msa0804840:CDS 35.0%
! TAGTCATTCTAGAAGAGTGA+GGG + chr5_3:21021530-21021549 Msa0804840:CDS 35.0%
TCAAATCAGGAAGTAAAGGA+TGG + chr5_3:21021589-21021608 Msa0804840:CDS 35.0%
ATGATAGCAATCAAATCTGG+TGG + chr5_3:21021660-21021679 Msa0804840:CDS 35.0%
AAGGTTCCTTCAAATCTCAT+TGG + chr5_3:21021684-21021703 Msa0804840:CDS 35.0%
CTTCTTTCTATTTCCGTTCT+TGG - chr5_3:21021754-21021773 None:intergenic 35.0%
!! ATGCTTTGAAGTTATTTCGC+TGG - chr5_3:21021817-21021836 None:intergenic 35.0%
GCGAAATAACTTCAAAGCAT+AGG + chr5_3:21021817-21021836 Msa0804840:CDS 35.0%
TGCTTCTTCATCTTCAAAGA+TGG + chr5_3:21021938-21021957 Msa0804840:CDS 35.0%
CAAAGATGGAATTAGCAAGA+AGG + chr5_3:21021952-21021971 Msa0804840:CDS 35.0%
TACAGTCTATGATGTTGAGT+TGG + chr5_3:21022043-21022062 Msa0804840:CDS 35.0%
!! TGAGTTGGTGATGACTATAT+TGG + chr5_3:21022058-21022077 Msa0804840:CDS 35.0%
TTGGAACAGTTCATGTTACA+AGG + chr5_3:21022077-21022096 Msa0804840:CDS 35.0%
TCAAAAGTCTTCAACGATCT+CGG - chr5_3:21022125-21022144 None:intergenic 35.0%
!! CGTTGAAGACTTTTGAAAGA+AGG + chr5_3:21022129-21022148 Msa0804840:CDS 35.0%
!! TGAAGACTTTTGAAAGAAGG+CGG + chr5_3:21022132-21022151 Msa0804840:CDS 35.0%
ATTGAAAGTGGCAAAACTTG+TGG + chr5_3:21022229-21022248 Msa0804840:CDS 35.0%
AATCTCTTGCAACTTCTTGA+AGG - chr5_3:21022262-21022281 None:intergenic 35.0%
AGCCATTGACATTTATCTCA+AGG + chr5_3:21022364-21022383 Msa0804840:CDS 35.0%
TCTGTCTTAATACTCGTTGA+GGG - chr5_3:21022498-21022517 None:intergenic 35.0%
ATTAGTAGTTCGTTACGAGA+GGG - chr5_3:21022556-21022575 None:intergenic 35.0%
AGGACATGAAACAGAATTAG+TGG + chr5_3:21022669-21022688 Msa0804840:intron 35.0%
CATTTATTGGAAGTTAGGTG+TGG + chr5_3:21022732-21022751 Msa0804840:intron 35.0%
!! AACTCTGTAACAGTTTTGAC+AGG - chr5_3:21022877-21022896 None:intergenic 35.0%
! ACATAGTACTGGAACTATGA+TGG - chr5_3:21022900-21022919 None:intergenic 35.0%
CACACTATCAATTCATGTGA+AGG - chr5_3:21022923-21022942 None:intergenic 35.0%
GCTATTGGATCAAAATTCGA+CGG + chr5_3:21023281-21023300 Msa0804840:intron 35.0%
!! AAAGCATTGCTTACAACACA+TGG + chr5_3:21023656-21023675 Msa0804840:CDS 35.0%
AGCTCTACTACAAGTATTCA+AGG + chr5_3:21023713-21023732 Msa0804840:CDS 35.0%
TACTACAAGTATTCAAGGTG+AGG + chr5_3:21023718-21023737 Msa0804840:CDS 35.0%
GTATTCAAGGTGAGGATAAT+TGG + chr5_3:21023726-21023745 Msa0804840:CDS 35.0%
! ATGCAAAAAGCCTTGTAACT+TGG + chr5_3:21024048-21024067 Msa0804840:three_prime_UTR 35.0%
! AAAAAGCCTTGTAACTTGGT+AGG + chr5_3:21024052-21024071 Msa0804840:three_prime_UTR 35.0%
! GATTTTCCTACCAAGTTACA+AGG - chr5_3:21024061-21024080 None:intergenic 35.0%
! ATGAGAGGCTTTGTAGTTGT+AGG - chr5_3:21020220-21020239 None:intergenic 40.0%
TTTCTTTGGTGGAGAGAAGA+AGG - chr5_3:21020267-21020286 None:intergenic 40.0%
! ATACACTCTGAGAACACTGT+GGG + chr5_3:21020354-21020373 Msa0804840:five_prime_UTR 40.0%
! ATTTGCTAAGCAAGCTCAAG+TGG - chr5_3:21020398-21020417 None:intergenic 40.0%
TTACTATCTGTAAGGTGCAC+TGG + chr5_3:21020463-21020482 Msa0804840:five_prime_UTR 40.0%
! GTACTGACGCTTCAAATTGA+AGG + chr5_3:21020876-21020895 Msa0804840:intron 40.0%
CCAAATGTAACAATACGTGC+CGG - chr5_3:21020928-21020947 None:intergenic 40.0%
CGGCACGTATTGTTACATTT+GGG + chr5_3:21020926-21020945 Msa0804840:intron 40.0%
CATAAGCATTTGGATAGCAG+GGG - chr5_3:21021117-21021136 None:intergenic 40.0%
GCATAAGCATTTGGATAGCA+GGG - chr5_3:21021118-21021137 None:intergenic 40.0%
TCTTTGCAGGCATAAGCATT+TGG - chr5_3:21021127-21021146 None:intergenic 40.0%
! GTTCAACTTCCTGATTTTCC+GGG + chr5_3:21021189-21021208 Msa0804840:CDS 40.0%
TTGTGTGCTAAGTTCTGCTA+TGG + chr5_3:21021231-21021250 Msa0804840:CDS 40.0%
CTTGCAGCTACAATGTTGTA+AGG - chr5_3:21021276-21021295 None:intergenic 40.0%
TTCAATTCTTGCATCCTCCA+TGG + chr5_3:21021369-21021388 Msa0804840:CDS 40.0%
TGTGGTCTGAAGACTTACTA+TGG - chr5_3:21021406-21021425 None:intergenic 40.0%
AGTAAGTCTTCAGACCACAA+AGG + chr5_3:21021407-21021426 Msa0804840:CDS 40.0%
CATTTGTGGTCTGAAGACTT+GGG + chr5_3:21021435-21021454 Msa0804840:CDS 40.0%
GTGACAAACTCACCTTTGTA+GGG - chr5_3:21021509-21021528 None:intergenic 40.0%
TGTGACAAACTCACCTTTGT+AGG - chr5_3:21021510-21021529 None:intergenic 40.0%
AATCAGGAAGTAAAGGATGG+TGG + chr5_3:21021592-21021611 Msa0804840:CDS 40.0%
ATCAGGAAGTAAAGGATGGT+GGG + chr5_3:21021593-21021612 Msa0804840:CDS 40.0%
GCATCACCAATGAGATTTGA+AGG - chr5_3:21021693-21021712 None:intergenic 40.0%
TTCAAAGCATAGGCTGCTAT+TGG + chr5_3:21021827-21021846 Msa0804840:CDS 40.0%
! AGCTTGCTTCCAACTGAAAA+AGG + chr5_3:21021861-21021880 Msa0804840:CDS 40.0%
!!! GAAACAGCACCTTTTTCAGT+TGG - chr5_3:21021873-21021892 None:intergenic 40.0%
ATGGAATTAGCAAGAAGGGT+AGG + chr5_3:21021957-21021976 Msa0804840:CDS 40.0%
AAGAAGGGTAGGACTTCAAT+TGG + chr5_3:21021968-21021987 Msa0804840:CDS 40.0%
TGAACTATGTGATGCTGAAG+AGG - chr5_3:21022207-21022226 None:intergenic 40.0%
AAGTGGCAAAACTTGTGGAT+AGG + chr5_3:21022234-21022253 Msa0804840:CDS 40.0%
CTCTGTCTTAATACTCGTTG+AGG - chr5_3:21022499-21022518 None:intergenic 40.0%
CTCAACGAGTATTAAGACAG+AGG + chr5_3:21022497-21022516 Msa0804840:intron 40.0%
GGGGGAAATCGTTAATTGAA+GGG - chr5_3:21022536-21022555 None:intergenic 40.0%
AGGGGGAAATCGTTAATTGA+AGG - chr5_3:21022537-21022556 None:intergenic 40.0%
TTAGTAGTTCGTTACGAGAG+GGG - chr5_3:21022555-21022574 None:intergenic 40.0%
GATTAGTAGTTCGTTACGAG+AGG - chr5_3:21022557-21022576 None:intergenic 40.0%
!! GTCAGGCTAAAATTTCTGGT+GGG - chr5_3:21022763-21022782 None:intergenic 40.0%
! AGTCAGGCTAAAATTTCTGG+TGG - chr5_3:21022764-21022783 None:intergenic 40.0%
GTCAGTCAGGCTAAAATTTC+TGG - chr5_3:21022767-21022786 None:intergenic 40.0%
GTCAAATTAAGGAGTCAGTC+AGG - chr5_3:21022780-21022799 None:intergenic 40.0%
TCATGTGAAGGACATAGTAC+TGG - chr5_3:21022911-21022930 None:intergenic 40.0%
! ACTGAATGAGTTCTAACAGG+AGG - chr5_3:21023101-21023120 None:intergenic 40.0%
! GACACTGAATGAGTTCTAAC+AGG - chr5_3:21023104-21023123 None:intergenic 40.0%
! GTCAGTACATTGGTAGCTAT+TGG + chr5_3:21023266-21023285 Msa0804840:intron 40.0%
CTTTCACTCTTGTTGAGTTC+TGG - chr5_3:21023467-21023486 None:intergenic 40.0%
CAGAACTCAACAAGAGTGAA+AGG + chr5_3:21023465-21023484 Msa0804840:CDS 40.0%
TGACTGCAAAAAGCTCTCAA+TGG + chr5_3:21023508-21023527 Msa0804840:CDS 40.0%
! GAGGATAATTGGAGTGTTTC+TGG + chr5_3:21023737-21023756 Msa0804840:CDS 40.0%
! TTGTGTAGGAAGAGCACAAA+TGG - chr5_3:21023885-21023904 None:intergenic 40.0%
!! TTGGTGTCAGTGACAAATCA+TGG + chr5_3:21024203-21024222 Msa0804840:three_prime_UTR 40.0%
! TGGTGTCAGTGACAAATCAT+GGG + chr5_3:21024204-21024223 Msa0804840:three_prime_UTR 40.0%
! TGCAAGAGGAAAGGTATGAG+AGG - chr5_3:21020235-21020254 None:intergenic 45.0%
CAGTGTTCTCAGAGTGTATG+AGG - chr5_3:21020353-21020372 None:intergenic 45.0%
! CATACACTCTGAGAACACTG+TGG + chr5_3:21020353-21020372 Msa0804840:five_prime_UTR 45.0%
CCGGCACGTATTGTTACATT+TGG + chr5_3:21020925-21020944 Msa0804840:intron 45.0%
GGCATAAGCATTTGGATAGC+AGG - chr5_3:21021119-21021138 None:intergenic 45.0%
! TGGTGATGAGATGAATCAGG+AGG - chr5_3:21021165-21021184 None:intergenic 45.0%
ATTCTTGCATCCTCCATGGT+TGG + chr5_3:21021373-21021392 Msa0804840:CDS 45.0%
CTATGGTATCCTTCCAACCA+TGG - chr5_3:21021389-21021408 None:intergenic 45.0%
GCATTTGTGGTCTGAAGACT+TGG + chr5_3:21021434-21021453 Msa0804840:CDS 45.0%
ACAAACTCACCTTTGTAGGG+TGG - chr5_3:21021506-21021525 None:intergenic 45.0%
AGCAATCAAATCTGGTGGCA+AGG + chr5_3:21021665-21021684 Msa0804840:CDS 45.0%
GTCTGAGTTAGACTCAGACT+CGG - chr5_3:21021790-21021809 None:intergenic 45.0%
GTCTGAGTCTAACTCAGACT+CGG + chr5_3:21021791-21021810 Msa0804840:CDS 45.0%
AAGGGTAGGACTTCAATTGG+AGG + chr5_3:21021971-21021990 Msa0804840:CDS 45.0%
AAGTCTTCAACGATCTCGGA+GGG - chr5_3:21022121-21022140 None:intergenic 45.0%
AAAGTCTTCAACGATCTCGG+AGG - chr5_3:21022122-21022141 None:intergenic 45.0%
TGTAGCTCAGTGATACGAGT+TGG + chr5_3:21022470-21022489 Msa0804840:intron 45.0%
GTAGCTCAGTGATACGAGTT+GGG + chr5_3:21022471-21022490 Msa0804840:intron 45.0%
TAGTAGTTCGTTACGAGAGG+GGG - chr5_3:21022554-21022573 None:intergenic 45.0%
! TGAGTTCTAACAGGAGGTTC+TGG - chr5_3:21023095-21023114 None:intergenic 45.0%
ATTGAACATGGTAGCTCGGT+TGG - chr5_3:21023137-21023156 None:intergenic 45.0%
TCTAAGGATGAAGCTAGCTG+AGG + chr5_3:21023790-21023809 Msa0804840:CDS 45.0%
GGTGTCAGTGACAAATCATG+GGG + chr5_3:21024205-21024224 Msa0804840:three_prime_UTR 45.0%
!!! TATAATAATAATAATTTTGA+GGG + chr5_3:21024121-21024140 Msa0804840:three_prime_UTR 5.0%
GTCTGACACTTACACGACAC+CGG + chr5_3:21020906-21020925 Msa0804840:intron 50.0%
! CAACTTCCTGATTTTCCGGG+TGG + chr5_3:21021192-21021211 Msa0804840:CDS 50.0%
TCAAATGCTTCCACTCCACC+CGG - chr5_3:21021210-21021229 None:intergenic 50.0%
TTGCATCCTCCATGGTTGGA+AGG + chr5_3:21021377-21021396 Msa0804840:CDS 50.0%
TGGTATCCTTCCAACCATGG+AGG - chr5_3:21021386-21021405 None:intergenic 50.0%
CCACAAATGCAACGCCTTTG+TGG - chr5_3:21021424-21021443 None:intergenic 50.0%
!! CCACAAAGGCGTTGCATTTG+TGG + chr5_3:21021421-21021440 Msa0804840:CDS 50.0%
AGTCTTGAGCCACCCTACAA+AGG + chr5_3:21021494-21021513 Msa0804840:CDS 50.0%
TGAAAGAAGGCGGTCACGTT+CGG + chr5_3:21022142-21022161 Msa0804840:CDS 50.0%
! ACATGGTAGCTCGGTTGGTA+AGG - chr5_3:21023132-21023151 None:intergenic 50.0%
CGTTCACGCAGTCAGTACAT+TGG + chr5_3:21023256-21023275 Msa0804840:intron 50.0%
! AATGGAAGCGTGCATGCATG+CGG + chr5_3:21023526-21023545 Msa0804840:CDS 50.0%
CAAGCTAGAGCAGCATCATC+TGG + chr5_3:21023602-21023621 Msa0804840:CDS 50.0%
! TCCTGATTTTCCGGGTGGAG+TGG + chr5_3:21021197-21021216 Msa0804840:CDS 55.0%
TCCACTCCACCCGGAAAATC+AGG - chr5_3:21021201-21021220 None:intergenic 55.0%
! AACGATCTCGGAGGGCTAGT+TGG - chr5_3:21022113-21022132 None:intergenic 55.0%
ACTGCGTGAACGCGTGGAAT+TGG - chr5_3:21023248-21023267 None:intergenic 55.0%
GCTAGAGCAGCATCATCTGG+TGG + chr5_3:21023605-21023624 Msa0804840:CDS 55.0%
!! GATCTCGGAGGGCTAGTTGG+TGG - chr5_3:21022110-21022129 None:intergenic 60.0%
!! GTACTGACTGCGTGAACGCG+TGG - chr5_3:21023254-21023273 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 21020015 21024325 21020015 ID=Msa0804840;Name=Msa0804840
chr5_3 mRNA 21020015 21024325 21020015 ID=Msa0804840-mRNA-1;Parent=Msa0804840;Name=Msa0804840-mRNA-1;_AED=0.14;_eAED=0.14;_QI=555|1|1|1|1|1|4|361|636
chr5_3 exon 21020015 21020628 21020015 ID=Msa0804840-mRNA-1:exon:8430;Parent=Msa0804840-mRNA-1
chr5_3 exon 21020733 21020802 21020733 ID=Msa0804840-mRNA-1:exon:8431;Parent=Msa0804840-mRNA-1
chr5_3 exon 21021111 21022385 21021111 ID=Msa0804840-mRNA-1:exon:8432;Parent=Msa0804840-mRNA-1
chr5_3 exon 21023458 21024325 21023458 ID=Msa0804840-mRNA-1:exon:8433;Parent=Msa0804840-mRNA-1
chr5_3 five_prime_UTR 21020015 21020569 21020015 ID=Msa0804840-mRNA-1:five_prime_utr;Parent=Msa0804840-mRNA-1
chr5_3 CDS 21020570 21020628 21020570 ID=Msa0804840-mRNA-1:cds;Parent=Msa0804840-mRNA-1
chr5_3 CDS 21020733 21020802 21020733 ID=Msa0804840-mRNA-1:cds;Parent=Msa0804840-mRNA-1
chr5_3 CDS 21021111 21022385 21021111 ID=Msa0804840-mRNA-1:cds;Parent=Msa0804840-mRNA-1
chr5_3 CDS 21023458 21023964 21023458 ID=Msa0804840-mRNA-1:cds;Parent=Msa0804840-mRNA-1
chr5_3 three_prime_UTR 21023965 21024325 21023965 ID=Msa0804840-mRNA-1:three_prime_utr;Parent=Msa0804840-mRNA-1
Gene Sequence

>Msa0804840

ATGAAGTTTATGAAACTTGGATCTCGTCCAGATACTTTCTACACTTCAGAAGCTATAAGGACAATCTCTTCTGAAGTTTCTAGTGATCTCATAATTCAAGTAAGGGGAAGTAGATATCTTCTTCACAAGTTTCCCCTGCTATCCAAATGCTTATGCCTGCAAAGATTATGCTCAGAATCACCTCCTGATTCATCTCATCACCAAATAGTTCAACTTCCTGATTTTCCGGGTGGAGTGGAAGCATTTGAGTTGTGTGCTAAGTTCTGCTATGGAATCACAATTACTCTAAGTCCTTACAACATTGTAGCTGCAAGATGTGCTGCTGAATATCTCCAAATGACTGAAGAAGTTGAAAAAGGAAACTTGATTCACAAGCTTGAGGTTTTTTTCAATTCTTGCATCCTCCATGGTTGGAAGGATACCATAGTAAGTCTTCAGACCACAAAGGCGTTGCATTTGTGGTCTGAAGACTTGGGAATTACCAGCAGATGCATTGAAACTATTGCGTCAAAAGTCTTGAGCCACCCTACAAAGGTGAGTTTGTCACATAGTCATTCTAGAAGAGTGAGGGATGACATATCTTGCAATGATACAGAAAGTTTGAGAATCAAATCAGGAAGTAAAGGATGGTGGGCTGAAGATTTAGCAGAACTTAGCATAGACCTTTATTGGAGAACAATGATAGCAATCAAATCTGGTGGCAAGGTTCCTTCAAATCTCATTGGTGATGCATTGAAAATTTATGCATCTAGATGGTTACCAAATATTTCCAAGAACGGAAATAGAAAGAAGAATGTTTCACTTGCCGAGTCTGAGTCTAACTCAGACTCGGCCAGCGAAATAACTTCAAAGCATAGGCTGCTATTGGAGTCAATAGTAAGCTTGCTTCCAACTGAAAAAGGTGCTGTTTCTTGTAGTTTTCTTTTGAAACTATTGAAAGCATCCAATATTCTCAATGCTTCTTCATCTTCAAAGATGGAATTAGCAAGAAGGGTAGGACTTCAATTGGAGGAAGCCACAGTGAATGATCTATTAATACCTTCACTTTCTTATACAAATGATACAGTCTATGATGTTGAGTTGGTGATGACTATATTGGAACAGTTCATGTTACAAGGACAAAGTCCACCAACTAGCCCTCCGAGATCGTTGAAGACTTTTGAAAGAAGGCGGTCACGTTCGGCTGAGAATATTAACTTTGAATTACAAGAAAGTAGGAGGTCCTCTTCAGCATCACATAGTTCAAAATTGAAAGTGGCAAAACTTGTGGATAGGTACCTTCAAGAAGTTGCAAGAGATTTGAATTTTTCATTGTCAAAATTCATTGCTCTTGCTGATATTATACCAGAATTTGCAAGATATGATCATGATGATCTCTATAGAGCCATTGACATTTATCTCAAGGCTCATCCAGAACTCAACAAGAGTGAAAGGAAAAGATTATGTAGAATTCTTGACTGCAAAAAGCTCTCAATGGAAGCGTGCATGCATGCGGCGCAAAATGAGCTACTCCCATTAAGAGTTGTTGTTCAAGTTCTGTTCTTTGAGCAAGCTAGAGCAGCATCATCTGGTGGCAAAGTAACAGAATTACAAAGCAATATCAAAGCATTGCTTACAACACATGGTATTGATCCATCAAAACATACAACAACACAGTTAAGCTCTACTACAAGTATTCAAGGTGAGGATAATTGGAGTGTTTCTGGTTTCAAGTCACCAAAATCAAAGTCTTCAACTCTAAGGATGAAGCTAGCTGAGGATCATGATGAATTTGATGAAAATGGTTTGGTAAATGATGATGGAATTGGAAGAAACTCTAGATTTAAGTCCATTTGTGCTCTTCCTACACAACCTAAAAAAATGCTTAGTAAATTGTGGTCTACTAATAGAACTGCTACTGAAAAAAATTGA
Protein sequence

>Msa0804840

MKFMKLGSRPDTFYTSEAIRTISSEVSSDLIIQVRGSRYLLHKFPLLSKCLCLQRLCSESPPDSSHHQIVQLPDFPGGVEAFELCAKFCYGITITLSPYNIVAARCAAEYLQMTEEVEKGNLIHKLEVFFNSCILHGWKDTIVSLQTTKALHLWSEDLGITSRCIETIASKVLSHPTKVSLSHSHSRRVRDDISCNDTESLRIKSGSKGWWAEDLAELSIDLYWRTMIAIKSGGKVPSNLIGDALKIYASRWLPNISKNGNRKKNVSLAESESNSDSASEITSKHRLLLESIVSLLPTEKGAVSCSFLLKLLKASNILNASSSSKMELARRVGLQLEEATVNDLLIPSLSYTNDTVYDVELVMTILEQFMLQGQSPPTSPPRSLKTFERRRSRSAENINFELQESRRSSSASHSSKLKVAKLVDRYLQEVARDLNFSLSKFIALADIIPEFARYDHDDLYRAIDIYLKAHPELNKSERKRLCRILDCKKLSMEACMHAAQNELLPLRVVVQVLFFEQARAASSGGKVTELQSNIKALLTTHGIDPSKHTTTQLSSTTSIQGEDNWSVSGFKSPKSKSSTLRMKLAEDHDEFDENGLVNDDGIGRNSRFKSICALPTQPKKMLSKLWSTNRTATEKN*