Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482840 | XP_003613103.1 | 99.214 | 636 | 5 | 0 | 1 | 636 | 1 | 636 | 0.0 | 1300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482840 | sp|Q9C9V6|Y1790_ARATH | 72.868 | 645 | 151 | 11 | 1 | 636 | 1 | 630 | 0.0 | 862 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482840 | G7JXS6 | 99.214 | 636 | 5 | 0 | 1 | 636 | 1 | 636 | 0.0 | 1300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077920 | Msa0482840 | 0.815755 | 7.856390e-52 | -8.615850e-47 |
| Msa0125810 | Msa0482840 | 0.814034 | 1.892382e-51 | -8.615850e-47 |
| Msa0299200 | Msa0482840 | 0.802398 | 5.717194e-49 | -8.615850e-47 |
| Msa0482840 | Msa0482870 | 0.885858 | 5.657600e-72 | -8.615850e-47 |
| Msa0482840 | Msa0762310 | 0.971554 | 2.396230e-133 | -8.615850e-47 |
| Msa0482840 | Msa0804840 | 0.805241 | 1.468161e-49 | -8.615850e-47 |
| Msa0482840 | Msa1028910 | -0.805367 | 1.381214e-49 | -8.615850e-47 |
| Msa0482840 | Msa1034900 | 0.802392 | 5.732596e-49 | -8.615850e-47 |
| Msa0482840 | Msa1068040 | -0.809355 | 1.971623e-50 | -8.615850e-47 |
| Msa0482840 | Msa1080280 | 0.807977 | 3.883288e-50 | -8.615850e-47 |
| Msa0482840 | Msa1083410 | 0.803371 | 3.599104e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482840 | MtrunA17_Chr5g0412591 | 94.654 | 636 | 4 | 1 | 1 | 636 | 1 | 606 | 0.0 | 1222 |
| Msa0482840 | MtrunA17_Chr8g0367891 | 72.057 | 637 | 136 | 9 | 1 | 636 | 1 | 596 | 0.0 | 867 |
| Msa0482840 | MtrunA17_Chr4g0076521 | 48.467 | 522 | 223 | 7 | 1 | 521 | 1 | 477 | 2.89e-162 | 478 |
| Msa0482840 | MtrunA17_Chr5g0401341 | 46.429 | 560 | 250 | 9 | 1 | 551 | 1 | 519 | 3.18e-159 | 471 |
| Msa0482840 | MtrunA17_Chr1g0150191 | 47.228 | 523 | 235 | 10 | 1 | 518 | 1 | 487 | 1.83e-152 | 453 |
| Msa0482840 | MtrunA17_Chr1g0207461 | 42.989 | 542 | 269 | 7 | 1 | 537 | 1 | 507 | 8.42e-147 | 439 |
| Msa0482840 | MtrunA17_Chr2g0290741 | 40.758 | 633 | 284 | 12 | 1 | 610 | 1 | 565 | 1.06e-145 | 434 |
| Msa0482840 | MtrunA17_Chr4g0050021 | 39.560 | 546 | 280 | 8 | 5 | 523 | 23 | 545 | 2.09e-126 | 388 |
| Msa0482840 | MtrunA17_Chr2g0279481 | 39.964 | 553 | 275 | 9 | 5 | 523 | 23 | 552 | 1.11e-125 | 387 |
| Msa0482840 | MtrunA17_Chr2g0303541 | 36.462 | 650 | 353 | 14 | 1 | 634 | 1 | 606 | 3.70e-118 | 366 |
| Msa0482840 | MtrunA17_Chr2g0285511 | 40.226 | 532 | 279 | 9 | 1 | 523 | 1 | 502 | 9.12e-114 | 353 |
| Msa0482840 | MtrunA17_Chr1g0181181 | 38.241 | 523 | 283 | 7 | 1 | 523 | 1 | 483 | 5.49e-111 | 345 |
| Msa0482840 | MtrunA17_Chr8g0382231 | 35.490 | 541 | 275 | 7 | 16 | 536 | 42 | 528 | 4.98e-110 | 344 |
| Msa0482840 | MtrunA17_Chr5g0401451 | 37.244 | 537 | 241 | 10 | 22 | 529 | 36 | 505 | 1.55e-107 | 338 |
| Msa0482840 | MtrunA17_Chr8g0374011 | 38.031 | 518 | 266 | 9 | 28 | 517 | 22 | 512 | 3.17e-105 | 333 |
| Msa0482840 | MtrunA17_Chr2g0320691 | 35.579 | 579 | 327 | 10 | 24 | 591 | 21 | 564 | 3.51e-105 | 332 |
| Msa0482840 | MtrunA17_Chr7g0245201 | 38.124 | 501 | 267 | 9 | 22 | 519 | 57 | 517 | 1.65e-101 | 322 |
| Msa0482840 | MtrunA17_Chr1g0199631 | 39.228 | 492 | 250 | 11 | 44 | 523 | 8 | 462 | 2.33e-100 | 317 |
| Msa0482840 | MtrunA17_Chr4g0010091 | 36.014 | 572 | 300 | 11 | 22 | 585 | 30 | 543 | 6.46e-98 | 312 |
| Msa0482840 | MtrunA17_Chr4g0053841 | 36.217 | 497 | 276 | 7 | 23 | 519 | 10 | 465 | 6.95e-93 | 298 |
| Msa0482840 | MtrunA17_Chr1g0195911 | 37.288 | 531 | 271 | 14 | 12 | 525 | 18 | 503 | 1.07e-92 | 299 |
| Msa0482840 | MtrunA17_Chr7g0268781 | 36.054 | 588 | 313 | 14 | 12 | 584 | 18 | 557 | 1.55e-91 | 296 |
| Msa0482840 | MtrunA17_Chr3g0108331 | 34.449 | 508 | 274 | 8 | 21 | 526 | 19 | 469 | 2.49e-86 | 280 |
| Msa0482840 | MtrunA17_Chr5g0432861 | 33.861 | 505 | 282 | 8 | 22 | 524 | 21 | 475 | 4.33e-77 | 256 |
| Msa0482840 | MtrunA17_Chr1g0191711 | 31.250 | 496 | 263 | 10 | 27 | 518 | 59 | 480 | 1.40e-71 | 241 |
| Msa0482840 | MtrunA17_Chr4g0003891 | 38.188 | 309 | 150 | 4 | 211 | 519 | 46 | 313 | 6.89e-66 | 223 |
| Msa0482840 | MtrunA17_Chr2g0332281 | 39.159 | 309 | 149 | 4 | 211 | 519 | 24 | 293 | 1.11e-62 | 213 |
| Msa0482840 | MtrunA17_Chr4g0023801 | 29.295 | 454 | 250 | 13 | 74 | 519 | 52 | 442 | 1.12e-47 | 176 |
| Msa0482840 | MtrunA17_Chr4g0037661 | 27.672 | 524 | 295 | 13 | 27 | 523 | 4 | 470 | 8.24e-47 | 173 |
| Msa0482840 | MtrunA17_Chr1g0163311 | 26.027 | 511 | 280 | 12 | 64 | 541 | 36 | 481 | 8.71e-42 | 159 |
| Msa0482840 | MtrunA17_Chr1g0206621 | 37.086 | 151 | 94 | 1 | 33 | 183 | 75 | 224 | 3.67e-22 | 95.9 |
| Msa0482840 | MtrunA17_Chr2g0280541 | 25.060 | 419 | 246 | 10 | 94 | 505 | 1 | 358 | 1.70e-21 | 97.8 |
| Msa0482840 | MtrunA17_Chr4g0041491 | 62.712 | 59 | 22 | 0 | 1 | 59 | 1 | 59 | 1.36e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482840 | AT1G67900.5 | 72.868 | 645 | 151 | 11 | 1 | 636 | 1 | 630 | 0.0 | 862 |
| Msa0482840 | AT1G67900.1 | 72.868 | 645 | 151 | 11 | 1 | 636 | 1 | 630 | 0.0 | 862 |
| Msa0482840 | AT1G67900.3 | 72.868 | 645 | 151 | 11 | 1 | 636 | 1 | 630 | 0.0 | 862 |
| Msa0482840 | AT1G67900.6 | 72.868 | 645 | 151 | 11 | 1 | 636 | 1 | 630 | 0.0 | 862 |
| Msa0482840 | AT1G67900.2 | 72.868 | 645 | 151 | 11 | 1 | 636 | 1 | 630 | 0.0 | 862 |
| Msa0482840 | AT1G67900.4 | 72.868 | 645 | 151 | 11 | 1 | 636 | 1 | 630 | 0.0 | 862 |
| Msa0482840 | AT3G26490.1 | 49.238 | 656 | 243 | 15 | 1 | 635 | 1 | 587 | 0.0 | 561 |
| Msa0482840 | AT3G26490.3 | 49.238 | 656 | 243 | 15 | 1 | 635 | 1 | 587 | 0.0 | 561 |
| Msa0482840 | AT3G26490.4 | 49.238 | 656 | 243 | 15 | 1 | 635 | 1 | 587 | 0.0 | 561 |
| Msa0482840 | AT3G26490.2 | 53.265 | 490 | 175 | 13 | 1 | 469 | 1 | 457 | 7.30e-161 | 471 |
| Msa0482840 | AT2G14820.2 | 45.149 | 536 | 247 | 8 | 1 | 528 | 1 | 497 | 1.48e-151 | 452 |
| Msa0482840 | AT2G14820.1 | 45.149 | 536 | 247 | 8 | 1 | 528 | 1 | 497 | 1.48e-151 | 452 |
| Msa0482840 | AT5G47800.3 | 43.152 | 533 | 257 | 7 | 1 | 530 | 1 | 490 | 7.69e-147 | 437 |
| Msa0482840 | AT5G47800.1 | 43.152 | 533 | 257 | 7 | 1 | 530 | 1 | 490 | 7.69e-147 | 437 |
| Msa0482840 | AT5G47800.4 | 43.152 | 533 | 257 | 7 | 1 | 530 | 1 | 490 | 7.69e-147 | 437 |
| Msa0482840 | AT5G47800.2 | 43.152 | 533 | 257 | 7 | 1 | 530 | 114 | 603 | 3.28e-145 | 437 |
| Msa0482840 | AT5G67440.3 | 43.619 | 525 | 247 | 8 | 1 | 522 | 1 | 479 | 9.19e-143 | 427 |
| Msa0482840 | AT5G67440.1 | 43.619 | 525 | 247 | 8 | 1 | 522 | 1 | 479 | 9.19e-143 | 427 |
| Msa0482840 | AT4G37590.1 | 40.336 | 595 | 263 | 12 | 1 | 582 | 1 | 516 | 8.61e-141 | 422 |
| Msa0482840 | AT4G31820.1 | 42.722 | 529 | 240 | 10 | 1 | 523 | 1 | 472 | 5.65e-133 | 402 |
| Msa0482840 | AT5G67440.2 | 43.595 | 484 | 225 | 7 | 41 | 522 | 5 | 442 | 1.06e-127 | 387 |
| Msa0482840 | AT2G23050.1 | 41.588 | 529 | 228 | 11 | 1 | 523 | 1 | 454 | 4.03e-127 | 384 |
| Msa0482840 | AT5G64330.2 | 36.498 | 611 | 314 | 9 | 7 | 549 | 33 | 637 | 4.44e-121 | 374 |
| Msa0482840 | AT5G64330.1 | 35.759 | 646 | 333 | 11 | 7 | 584 | 33 | 664 | 7.89e-121 | 376 |
| Msa0482840 | AT4G31820.2 | 42.017 | 476 | 214 | 9 | 53 | 523 | 1 | 419 | 2.05e-116 | 357 |
| Msa0482840 | AT5G64330.3 | 37.133 | 579 | 290 | 9 | 39 | 549 | 6 | 578 | 1.40e-115 | 358 |
| Msa0482840 | AT1G30440.1 | 39.171 | 531 | 296 | 9 | 1 | 523 | 1 | 512 | 2.50e-113 | 354 |
| Msa0482840 | AT5G03250.1 | 37.782 | 532 | 296 | 6 | 1 | 523 | 1 | 506 | 3.49e-113 | 352 |
| Msa0482840 | AT5G13600.1 | 40.189 | 530 | 277 | 10 | 1 | 523 | 1 | 497 | 5.32e-110 | 343 |
| Msa0482840 | AT5G67385.1 | 38.976 | 508 | 258 | 8 | 15 | 519 | 16 | 474 | 3.68e-105 | 331 |
| Msa0482840 | AT5G48800.1 | 39.053 | 507 | 249 | 9 | 22 | 523 | 37 | 488 | 1.09e-98 | 315 |
| Msa0482840 | AT5G67385.4 | 38.025 | 476 | 245 | 7 | 47 | 519 | 1 | 429 | 7.74e-96 | 305 |
| Msa0482840 | AT5G67385.5 | 38.025 | 476 | 245 | 7 | 47 | 519 | 1 | 429 | 7.74e-96 | 305 |
| Msa0482840 | AT5G67385.2 | 38.025 | 476 | 245 | 7 | 47 | 519 | 1 | 429 | 7.74e-96 | 305 |
| Msa0482840 | AT5G67385.3 | 38.025 | 476 | 245 | 7 | 47 | 519 | 1 | 429 | 7.74e-96 | 305 |
| Msa0482840 | AT5G10250.2 | 34.357 | 521 | 259 | 8 | 22 | 519 | 46 | 506 | 5.88e-92 | 297 |
| Msa0482840 | AT3G08570.1 | 37.087 | 515 | 270 | 13 | 13 | 519 | 22 | 490 | 2.13e-91 | 295 |
| Msa0482840 | AT5G66560.1 | 36.029 | 544 | 258 | 10 | 28 | 517 | 21 | 528 | 3.09e-91 | 296 |
| Msa0482840 | AT3G44820.1 | 33.786 | 589 | 330 | 15 | 26 | 591 | 23 | 574 | 4.22e-91 | 296 |
| Msa0482840 | AT1G03010.2 | 37.972 | 503 | 272 | 12 | 24 | 519 | 7 | 476 | 3.64e-90 | 292 |
| Msa0482840 | AT5G66560.3 | 36.023 | 533 | 251 | 10 | 39 | 517 | 3 | 499 | 1.15e-89 | 291 |
| Msa0482840 | AT1G03010.3 | 37.597 | 516 | 280 | 13 | 11 | 519 | 22 | 502 | 1.18e-89 | 291 |
| Msa0482840 | AT1G03010.1 | 37.972 | 503 | 272 | 12 | 24 | 519 | 34 | 503 | 1.24e-89 | 291 |
| Msa0482840 | AT5G66560.4 | 38.696 | 460 | 234 | 9 | 70 | 517 | 66 | 489 | 3.27e-89 | 290 |
| Msa0482840 | AT5G10250.1 | 34.442 | 511 | 257 | 9 | 22 | 519 | 46 | 491 | 9.44e-89 | 288 |
| Msa0482840 | AT2G23050.2 | 40.436 | 413 | 169 | 8 | 113 | 523 | 1 | 338 | 6.48e-87 | 276 |
| Msa0482840 | AT3G49970.1 | 36.344 | 465 | 216 | 11 | 39 | 502 | 7 | 392 | 1.60e-85 | 277 |
| Msa0482840 | AT3G49970.2 | 36.344 | 465 | 216 | 11 | 39 | 502 | 7 | 392 | 1.60e-85 | 277 |
| Msa0482840 | AT3G08660.1 | 35.000 | 520 | 256 | 12 | 8 | 519 | 21 | 466 | 3.75e-83 | 273 |
| Msa0482840 | AT2G47860.1 | 35.341 | 498 | 282 | 10 | 24 | 519 | 35 | 494 | 8.11e-81 | 268 |
| Msa0482840 | AT2G30520.1 | 32.604 | 503 | 285 | 9 | 21 | 523 | 25 | 473 | 5.90e-79 | 262 |
| Msa0482840 | AT3G50840.1 | 34.921 | 504 | 276 | 8 | 28 | 529 | 18 | 471 | 1.81e-77 | 257 |
| Msa0482840 | AT5G03250.2 | 36.429 | 420 | 232 | 6 | 113 | 523 | 1 | 394 | 3.01e-76 | 251 |
| Msa0482840 | AT2G47860.3 | 33.460 | 526 | 277 | 11 | 24 | 519 | 35 | 517 | 1.01e-75 | 255 |
| Msa0482840 | AT3G08660.3 | 35.076 | 459 | 224 | 10 | 69 | 519 | 14 | 406 | 2.51e-73 | 245 |
| Msa0482840 | AT2G30520.2 | 33.260 | 454 | 251 | 8 | 70 | 523 | 24 | 425 | 1.05e-72 | 244 |
| Msa0482840 | AT2G30520.3 | 33.260 | 454 | 251 | 8 | 70 | 523 | 24 | 425 | 1.05e-72 | 244 |
| Msa0482840 | AT3G50840.2 | 33.874 | 493 | 258 | 9 | 47 | 529 | 1 | 435 | 6.82e-71 | 239 |
| Msa0482840 | AT3G50840.3 | 33.874 | 493 | 258 | 9 | 47 | 529 | 1 | 435 | 6.82e-71 | 239 |
| Msa0482840 | AT5G66560.2 | 32.665 | 499 | 240 | 10 | 28 | 469 | 21 | 480 | 7.78e-65 | 221 |
| Msa0482840 | AT1G52770.1 | 39.677 | 310 | 152 | 4 | 211 | 519 | 28 | 303 | 3.08e-64 | 219 |
| Msa0482840 | AT3G08660.2 | 31.770 | 469 | 242 | 12 | 8 | 470 | 21 | 417 | 1.30e-60 | 208 |
| Msa0482840 | AT3G15570.1 | 37.705 | 305 | 151 | 4 | 220 | 519 | 38 | 308 | 3.43e-59 | 205 |
| Msa0482840 | AT2G47860.4 | 32.662 | 447 | 261 | 10 | 24 | 468 | 35 | 443 | 3.51e-57 | 200 |
| Msa0482840 | AT2G47860.5 | 33.092 | 414 | 232 | 9 | 113 | 519 | 1 | 376 | 3.21e-54 | 193 |
| Msa0482840 | AT2G47860.2 | 33.092 | 414 | 232 | 9 | 113 | 519 | 1 | 376 | 3.21e-54 | 193 |
| Msa0482840 | AT2G47860.6 | 30.998 | 471 | 262 | 11 | 24 | 469 | 35 | 467 | 2.31e-52 | 187 |
| Msa0482840 | AT3G19850.1 | 26.695 | 472 | 264 | 8 | 69 | 517 | 51 | 463 | 2.19e-49 | 181 |
| Msa0482840 | AT5G48130.1 | 25.828 | 453 | 270 | 9 | 70 | 517 | 76 | 467 | 1.23e-41 | 160 |
| Msa0482840 | AT3G03510.1 | 30.000 | 450 | 207 | 12 | 82 | 519 | 8 | 361 | 1.63e-41 | 157 |
| Msa0482840 | AT1G50280.2 | 24.569 | 464 | 276 | 8 | 70 | 513 | 18 | 427 | 4.09e-40 | 154 |
| Msa0482840 | AT1G50280.1 | 24.569 | 464 | 276 | 8 | 70 | 513 | 51 | 460 | 5.96e-40 | 154 |
| Msa0482840 | AT5G17580.2 | 27.376 | 526 | 312 | 11 | 8 | 526 | 2 | 464 | 7.44e-38 | 148 |
| Msa0482840 | AT5G17580.1 | 27.539 | 512 | 301 | 11 | 22 | 526 | 1 | 449 | 2.07e-37 | 147 |
| Msa0482840 | AT3G22104.1 | 25.773 | 485 | 278 | 14 | 28 | 502 | 6 | 418 | 2.67e-32 | 131 |
| Msa0482840 | AT3G22104.4 | 25.182 | 413 | 230 | 10 | 98 | 502 | 2 | 343 | 3.78e-23 | 103 |
| Msa0482840 | AT3G22104.2 | 25.182 | 413 | 230 | 10 | 98 | 502 | 2 | 343 | 3.78e-23 | 103 |
| Msa0482840 | AT3G22104.3 | 25.182 | 413 | 230 | 10 | 98 | 502 | 2 | 343 | 3.78e-23 | 103 |
Find 145 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTAGCATAGACCTTTAT+TGG | 0.142674 | 3_3:-90411329 | Msa0482840:CDS |
| GAGGATAATTGGAGTGTTTC+TGG | 0.144528 | 3_3:-90409219 | Msa0482840:CDS |
| CTTCTTTCTATTTCCGTTCT+TGG | 0.164934 | 3_3:+90411209 | None:intergenic |
| CTTTCACTCTTGTTGAGTTC+TGG | 0.171118 | 3_3:+90409492 | None:intergenic |
| CTCAAAATTATTATTATTAT+AGG | 0.177140 | 3_3:+90408838 | None:intergenic |
| TTTCCGTTCTTGGAAATATT+TGG | 0.180699 | 3_3:+90411219 | None:intergenic |
| AATCAGGAAGTTGGACTATT+TGG | 0.186197 | 3_3:+90411778 | None:intergenic |
| CATGATGAATTTGATGAAAA+TGG | 0.208213 | 3_3:-90409141 | Msa0482840:CDS |
| ACTTGAACAACAACTCTTAA+AGG | 0.232478 | 3_3:+90409390 | None:intergenic |
| AAGCAAAGATAGAATTTCTT+TGG | 0.270418 | 3_3:+90412683 | None:intergenic |
| AAGAAAAGTTCAGAATTCTT+AGG | 0.276907 | 3_3:+90412640 | None:intergenic |
| TCCAAGTTTCATAAACTTCA+TGG | 0.285144 | 3_3:+90412392 | None:intergenic |
| AGAGTTGAAGACTTTGATTT+TGG | 0.291628 | 3_3:+90409186 | None:intergenic |
| TTTCAACTTCTTCAGTCATT+TGG | 0.299710 | 3_3:+90411646 | None:intergenic |
| TGATCATATCTTGCAAATTC+TGG | 0.304119 | 3_3:+90410634 | None:intergenic |
| GTATTCAAGGTGAGGATAAT+TGG | 0.310231 | 3_3:-90409230 | Msa0482840:CDS |
| AGCTTGCTTCCAACAGAAAA+AGG | 0.312871 | 3_3:-90411099 | Msa0482840:CDS |
| TGAAGAAGCATTGAGAATAT+TGG | 0.313880 | 3_3:+90411035 | None:intergenic |
| GTAGACAAATACAGCAATAT+TGG | 0.314454 | 3_3:+90408729 | None:intergenic |
| TTCAAAGCATAGGCTTCTAT+TGG | 0.325252 | 3_3:-90411133 | Msa0482840:CDS |
| CCACAAAAGCGTTGCATTTG+TGG | 0.325463 | 3_3:-90411539 | Msa0482840:CDS |
| ATGACTGAAGAAGTTGAAAA+AGG | 0.332313 | 3_3:-90411642 | Msa0482840:CDS |
| CTATCATTGTTCTCCAATAA+AGG | 0.335482 | 3_3:+90411316 | None:intergenic |
| GATATCGGAATAGGAATCTT+TGG | 0.335729 | 3_3:-90408773 | Msa0482840:three_prime_UTR |
| TGAAAATTTATGCATCTAGA+TGG | 0.337434 | 3_3:-90411245 | Msa0482840:CDS |
| TCTACACTTCGGAAGCTATA+AGG | 0.341634 | 3_3:-90412353 | Msa0482840:intron |
| GCCATGAAGTTTATGAAACT+TGG | 0.345527 | 3_3:-90412393 | Msa0482840:CDS |
| TCCGAAGTGTAGAAAGTATC+TGG | 0.347377 | 3_3:+90412363 | None:intergenic |
| TAAAATGTCAAAATCACTTA+AGG | 0.350973 | 3_3:-90412883 | Msa0482840:five_prime_UTR |
| GTTAGGATAGATGACATTAA+TGG | 0.357070 | 3_3:+90412797 | None:intergenic |
| TCCACTCCACCCGGAAAATC+AGG | 0.369267 | 3_3:+90411762 | None:intergenic |
| TGTGACAAACTCACCTTTGT+AGG | 0.375606 | 3_3:+90411453 | None:intergenic |
| AAAATAAATATTCTTCATCT+TGG | 0.386333 | 3_3:-90412545 | Msa0482840:five_prime_UTR |
| TCTTTGCAGGCATAAGCATT+TGG | 0.386345 | 3_3:+90411836 | None:intergenic |
| TGAAAGAAGGCGATCACGTT+CGG | 0.388598 | 3_3:-90410818 | Msa0482840:CDS |
| TTGGTAAATGATGATGGAAT+TGG | 0.390964 | 3_3:-90409117 | Msa0482840:CDS |
| ATTCTGAGCATAATCTTTGC+AGG | 0.392741 | 3_3:+90411823 | None:intergenic |
| TGAAAAGTTGATATCGGAAT+AGG | 0.402848 | 3_3:-90408782 | Msa0482840:three_prime_UTR |
| TGTTTGTAAGGGTAATTTAG+AGG | 0.403451 | 3_3:-90408962 | Msa0482840:three_prime_UTR |
| GCATTTGTGGTCGGAAGACC+TGG | 0.409040 | 3_3:-90411526 | Msa0482840:CDS |
| TGAGTTGGTGATGACTATAT+TGG | 0.420160 | 3_3:-90410902 | Msa0482840:CDS |
| GTTATAACTATTTGACTGAA+TGG | 0.421950 | 3_3:-90412861 | Msa0482840:five_prime_UTR |
| TTTCTTTGGTGGAGAGAAGA+AGG | 0.424038 | 3_3:+90412697 | None:intergenic |
| TACTAGTAGCTTAAATAGTT+AGG | 0.424216 | 3_3:+90412780 | None:intergenic |
| GGAAGAGGCTTTGTAGTTGT+AGG | 0.424519 | 3_3:+90412746 | None:intergenic |
| GTGATCTCATAATTCAAGTA+AGG | 0.425248 | 3_3:-90412204 | Msa0482840:CDS |
| TGCTTCTTCATCTTCAAAGA+TGG | 0.426814 | 3_3:-90411022 | Msa0482840:CDS |
| CTTGAACAACAACTCTTAAA+GGG | 0.429190 | 3_3:+90409391 | None:intergenic |
| TTGGTGTCAGTGACAAATCA+TGG | 0.436046 | 3_3:-90408754 | Msa0482840:three_prime_UTR |
| TTAACACATGATTTAGAAGA+AGG | 0.437116 | 3_3:-90412429 | Msa0482840:five_prime_UTR |
| TGTCACATAGTCATTCTAGA+AGG | 0.445951 | 3_3:-90411437 | Msa0482840:CDS |
| AGCTCTACTACAAGTATTCA+AGG | 0.447165 | 3_3:-90409243 | Msa0482840:CDS |
| GCATCACCAATGAGATTTGA+AGG | 0.447840 | 3_3:+90411270 | None:intergenic |
| GGCATAAGCATTTGGACAGC+AGG | 0.452818 | 3_3:+90411844 | None:intergenic |
| GTGTCATGAAAAGTTGATAT+CGG | 0.454136 | 3_3:-90408788 | Msa0482840:three_prime_UTR |
| TTGTGTAGGAAGAGCACAAA+TGG | 0.459576 | 3_3:+90409074 | None:intergenic |
| TGAATTTGATGAAAATGGTT+TGG | 0.459746 | 3_3:-90409136 | Msa0482840:CDS |
| CAAGCTAGAGCAGCATCATC+TGG | 0.460416 | 3_3:-90409354 | Msa0482840:CDS |
| ATTTGGTGATGAGATGAATC+AGG | 0.463874 | 3_3:+90411795 | None:intergenic |
| TACCTTGAGATAAATGTCAA+TGG | 0.464242 | 3_3:+90410594 | None:intergenic |
| ACAATGATAGCAATCAAATC+TGG | 0.464906 | 3_3:-90411303 | Msa0482840:CDS |
| AACGATCTCGGAGGGCTAGT+TGG | 0.466201 | 3_3:+90410850 | None:intergenic |
| AAGGTTCCTTCAAATCTCAT+TGG | 0.467784 | 3_3:-90411276 | Msa0482840:CDS |
| TTCAATTCTTGCATCCTCCA+TGG | 0.467888 | 3_3:-90411591 | Msa0482840:CDS |
| TCAAAAGTCTTCAACGATCT+CGG | 0.468557 | 3_3:+90410838 | None:intergenic |
| GCTTGTGGATAGGTACCTTC+AGG | 0.469743 | 3_3:-90410716 | Msa0482840:CDS |
| ATGCTTTGAAGTTATTTCGC+TGG | 0.473982 | 3_3:+90411146 | None:intergenic |
| GAAAGTTTGAGAATCAAATC+AGG | 0.487700 | 3_3:-90411384 | Msa0482840:CDS |
| CAGTGTTCTCAGAGTGTATG+AGG | 0.487734 | 3_3:+90412612 | None:intergenic |
| CAAAGATAGAATTTCTTTGG+TGG | 0.488846 | 3_3:+90412686 | None:intergenic |
| AAGAAGGGTAGGACTTCAAT+TGG | 0.492020 | 3_3:-90410992 | Msa0482840:CDS |
| TGCGTTGTTGTATGTTTCGA+TGG | 0.498679 | 3_3:+90409270 | None:intergenic |
| AGAATCAAATCAGGAAGTAA+AGG | 0.499839 | 3_3:-90411375 | Msa0482840:CDS |
| TGACTGAATGGACATAACTT+AGG | 0.499955 | 3_3:-90412849 | Msa0482840:five_prime_UTR |
| TTCTGCTAAGCAAGCTCAAG+TGG | 0.505949 | 3_3:+90412567 | None:intergenic |
| TTGGAACAGTTCATGTTACA+AGG | 0.510924 | 3_3:-90410883 | Msa0482840:CDS |
| AATGGTTTGGTAAATGATGA+TGG | 0.512979 | 3_3:-90409123 | Msa0482840:CDS |
| ATTCTTGCATCCTCCATGGT+TGG | 0.519380 | 3_3:-90411587 | Msa0482840:CDS |
| CACCCGGAAAATCAGGAAGT+TGG | 0.520809 | 3_3:+90411769 | None:intergenic |
| ATTGAAAGTGGCAAAGCTTG+TGG | 0.529767 | 3_3:-90410731 | Msa0482840:CDS |
| GCGAAATAACTTCAAAGCAT+AGG | 0.531559 | 3_3:-90411143 | Msa0482840:CDS |
| TGGTGTCAGTGACAAATCAT+GGG | 0.535315 | 3_3:-90408753 | Msa0482840:three_prime_UTR |
| CTTGCAGCTACAATGTTGTA+AGG | 0.538418 | 3_3:+90411687 | None:intergenic |
| TGCATCTGCTGGTAATTCCC+AGG | 0.538781 | 3_3:+90411508 | None:intergenic |
| AATAGTTTCAATGCATCTGC+TGG | 0.540399 | 3_3:+90411497 | None:intergenic |
| TTGCATCCTCCATGGTTGGA+AGG | 0.541728 | 3_3:-90411583 | Msa0482840:CDS |
| ACATAGTTCAAAATTGAAAG+TGG | 0.541920 | 3_3:-90410743 | Msa0482840:CDS |
| GTTTGTAAGGGTAATTTAGA+GGG | 0.542040 | 3_3:-90408961 | Msa0482840:three_prime_UTR |
| TTGAATTACAAGAGAGTAGG+AGG | 0.548073 | 3_3:-90410780 | Msa0482840:CDS |
| ACTTTGAATTACAAGAGAGT+AGG | 0.548128 | 3_3:-90410783 | Msa0482840:CDS |
| TCCAGATACTTTCTACACTT+CGG | 0.550104 | 3_3:-90412364 | Msa0482840:CDS |
| AGCCATTGACATTTATCTCA+AGG | 0.550508 | 3_3:-90410596 | Msa0482840:intron |
| TGATCTCATAATTCAAGTAA+GGG | 0.550839 | 3_3:-90412203 | Msa0482840:CDS |
| AATGGAAGCGTGCATGCATG+CGG | 0.551671 | 3_3:-90409430 | Msa0482840:CDS |
| GTGACAAACTCACCTTTGTA+GGG | 0.551753 | 3_3:+90411454 | None:intergenic |
| TTGTGTGCTAAGTTCTGCTA+TGG | 0.551870 | 3_3:-90411729 | Msa0482840:CDS |
| CAAAGATGGAATTAGCAAGA+AGG | 0.552149 | 3_3:-90411008 | Msa0482840:CDS |
| CAAGAGGAAAGGTAAGGAAG+AGG | 0.554998 | 3_3:+90412731 | None:intergenic |
| AAACTTGATTCACAAGCTTG+AGG | 0.555629 | 3_3:-90411619 | Msa0482840:CDS |
| AAAGATGGAATTAGCAAGAA+GGG | 0.557589 | 3_3:-90411007 | Msa0482840:CDS |
| TTACCAAATATTTCCAAGAA+CGG | 0.560310 | 3_3:-90411222 | Msa0482840:CDS |
| CAGAACTCAACAAGAGTGAA+AGG | 0.560948 | 3_3:-90409491 | Msa0482840:CDS |
| GATCTCGGAGGGCTAGTTGG+TGG | 0.563074 | 3_3:+90410853 | None:intergenic |
| TGAACTATGTGATGCTGAAG+AGG | 0.563744 | 3_3:+90410756 | None:intergenic |
| ATAGTCATTCTAGAAGGATG+AGG | 0.566210 | 3_3:-90411431 | Msa0482840:CDS |
| CATACATTAAAAGATTCTTG+TGG | 0.570521 | 3_3:+90408877 | None:intergenic |
| TGTATAATTTGCAAGAGGAA+AGG | 0.570984 | 3_3:+90412720 | None:intergenic |
| GCATAAGCATTTGGACAGCA+GGG | 0.571856 | 3_3:+90411845 | None:intergenic |
| TCAAATGCTTCCACTCCACC+CGG | 0.574131 | 3_3:+90411753 | None:intergenic |
| CTATGATATCCTTCCAACCA+TGG | 0.575719 | 3_3:+90411574 | None:intergenic |
| GAAGGTGTATAATTTGCAAG+AGG | 0.578392 | 3_3:+90412715 | None:intergenic |
| ATCAGGAAGTAAAGGATGGT+GGG | 0.580568 | 3_3:-90411367 | Msa0482840:CDS |
| ATGGAATTAGCAAGAAGGGT+AGG | 0.583335 | 3_3:-90411003 | Msa0482840:CDS |
| AGCAATCAAATCTGGTGGCA+AGG | 0.587341 | 3_3:-90411295 | Msa0482840:CDS |
| CATCTCTTGCAACTTCCTGA+AGG | 0.592567 | 3_3:+90410701 | None:intergenic |
| AAAAGCGTTGCATTTGTGGT+CGG | 0.592600 | 3_3:-90411535 | Msa0482840:CDS |
| GTCTGAGTCTAACTCAGACT+CGG | 0.598165 | 3_3:-90411169 | Msa0482840:CDS |
| AATCAGGAAGTAAAGGATGG+TGG | 0.603373 | 3_3:-90411368 | Msa0482840:CDS |
| TACTACAAGTATTCAAGGTG+AGG | 0.607107 | 3_3:-90409238 | Msa0482840:CDS |
| TCTACACTGAATTATGCAAG+TGG | 0.608488 | 3_3:-90412463 | Msa0482840:five_prime_UTR |
| AAGGGTAGGACTTCAATTGG+AGG | 0.609288 | 3_3:-90410989 | Msa0482840:CDS |
| AGTCTTGAGCCACCCTACAA+AGG | 0.609787 | 3_3:-90411466 | Msa0482840:CDS |
| TAGTCATTCTAGAAGGATGA+GGG | 0.613006 | 3_3:-90411430 | Msa0482840:CDS |
| TCAAATCAGGAAGTAAAGGA+TGG | 0.616909 | 3_3:-90411371 | Msa0482840:CDS |
| TACAGTCTATGATGTTGAGT+TGG | 0.618402 | 3_3:-90410917 | Msa0482840:CDS |
| AATTTGCAAGAGGAAAGGTA+AGG | 0.621417 | 3_3:+90412725 | None:intergenic |
| AAGTCTTCAACGATCTCGGA+GGG | 0.622487 | 3_3:+90410842 | None:intergenic |
| AAGTGGCAAAGCTTGTGGAT+AGG | 0.625893 | 3_3:-90410726 | Msa0482840:CDS |
| ATGATAGCAATCAAATCTGG+TGG | 0.634663 | 3_3:-90411300 | Msa0482840:CDS |
| GCTAGAGCAGCATCATCTGG+TGG | 0.637791 | 3_3:-90409351 | Msa0482840:CDS |
| GATCTCATAATTCAAGTAAG+GGG | 0.642036 | 3_3:-90412202 | Msa0482840:CDS |
| GTCTGAGTTAGACTCAGACT+CGG | 0.643618 | 3_3:+90411173 | None:intergenic |
| TCTAAGAATGAAGCTTGCTG+AGG | 0.644686 | 3_3:-90409166 | Msa0482840:CDS |
| AAAGCATTGCTTACAACACA+TGG | 0.648620 | 3_3:-90409300 | Msa0482840:CDS |
| ATACACTCTGAGAACACTGT+CGG | 0.653041 | 3_3:-90412608 | Msa0482840:five_prime_UTR |
| CATTTGTGGTCGGAAGACCT+GGG | 0.654710 | 3_3:-90411525 | Msa0482840:CDS |
| AAAGTCTTCAACGATCTCGG+AGG | 0.669614 | 3_3:+90410841 | None:intergenic |
| CATAAGCATTTGGACAGCAG+GGG | 0.670987 | 3_3:+90411846 | None:intergenic |
| ACAAACTCACCTTTGTAGGG+TGG | 0.674969 | 3_3:+90411457 | None:intergenic |
| TCATTTGTATAAGAAAGTGA+AGG | 0.677583 | 3_3:+90410940 | None:intergenic |
| AAGTAGATATCTTCTTCACA+AGG | 0.678976 | 3_3:-90412179 | Msa0482840:intron |
| GGTGTCAGTGACAAATCATG+GGG | 0.687341 | 3_3:-90408752 | Msa0482840:three_prime_UTR |
| TGATATCCTTCCAACCATGG+AGG | 0.717676 | 3_3:+90411577 | None:intergenic |
| TGGTGATGAGATGAATCAGG+AGG | 0.725233 | 3_3:+90411798 | None:intergenic |
| TATTAATAGATCATTCACTG+TGG | 0.782652 | 3_3:+90410963 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTATATACTTATGA+AGG | + | chr3_3:90409692-90409711 | None:intergenic | 10.0% |
| !!! | AAGTATATAATTTTTTACTT+TGG | - | chr3_3:90409696-90409715 | Msa0482840:intron | 10.0% |
| !!! | AAATACAATAAACATTTTAT+AGG | + | chr3_3:90411043-90411062 | None:intergenic | 10.0% |
| !!! | TAATTTAAGTTTTTTTTTCA+AGG | - | chr3_3:90411711-90411730 | Msa0482840:CDS | 10.0% |
| !! | CTCAAAATTATTATTATTAT+AGG | + | chr3_3:90412767-90412786 | None:intergenic | 10.0% |
| !!! | CTATAATAATAATAATTTTG+AGG | - | chr3_3:90412765-90412784 | Msa0482840:five_prime_UTR | 10.0% |
| !! | AAAATAAATATTCTTCATCT+TGG | - | chr3_3:90409057-90409076 | Msa0482840:CDS | 15.0% |
| !!! | ATTTTTACCAAGTTATAAAA+TGG | + | chr3_3:90411078-90411097 | None:intergenic | 15.0% |
| !!! | TTATGTGTGTATTTTTTTAT+AGG | + | chr3_3:90411232-90411251 | None:intergenic | 15.0% |
| !! | AAACATGTAAAAAAAAAAAG+TGG | - | chr3_3:90411253-90411272 | Msa0482840:CDS | 15.0% |
| !!! | TTGAATAAGACAATATTTTA+AGG | + | chr3_3:90411352-90411371 | None:intergenic | 15.0% |
| !!! | AATTTACTAAGCATTTTTTT+AGG | + | chr3_3:90412554-90412573 | None:intergenic | 15.0% |
| !!! | AGTAATGTAATTTTAGAGAA+TGG | + | chr3_3:90408683-90408702 | None:intergenic | 20.0% |
| !! | TAAAATGTCAAAATCACTTA+AGG | - | chr3_3:90408719-90408738 | Msa0482840:three_prime_UTR | 20.0% |
| !!! | TTTTCTTTTTACTATCTGTT+AGG | - | chr3_3:90409097-90409116 | Msa0482840:CDS | 20.0% |
| !! | CAAAATTAAACAATCCAAAA+AGG | + | chr3_3:90409325-90409344 | None:intergenic | 20.0% |
| !!! | ATACTTCACTTTCAAATTTT+AGG | - | chr3_3:90411289-90411308 | Msa0482840:CDS | 20.0% |
| !!! | TTGTCTTATTCAACATTTAT+TGG | - | chr3_3:90411359-90411378 | Msa0482840:CDS | 20.0% |
| !! | AAATAGAGTGAATTCATAAA+TGG | + | chr3_3:90411609-90411628 | None:intergenic | 20.0% |
| !! | ATATAGGACTAATAAAAACT+AGG | - | chr3_3:90411809-90411828 | Msa0482840:CDS | 20.0% |
| !! | AAAAAATGCTTAGTAAATTG+TGG | - | chr3_3:90412555-90412574 | Msa0482840:five_prime_UTR | 20.0% |
| !!! | TTAGTTTTTTCATGTTTGTA+AGG | - | chr3_3:90412628-90412647 | Msa0482840:five_prime_UTR | 20.0% |
| !!! | TAGTTTTTTCATGTTTGTAA+GGG | - | chr3_3:90412629-90412648 | Msa0482840:five_prime_UTR | 20.0% |
| ! | GTTATAACTATTTGACTGAA+TGG | - | chr3_3:90408741-90408760 | Msa0482840:three_prime_UTR | 25.0% |
| ! | TACTAGTAGCTTAAATAGTT+AGG | + | chr3_3:90408825-90408844 | None:intergenic | 25.0% |
| ! | AAGCAAAGATAGAATTTCTT+TGG | + | chr3_3:90408922-90408941 | None:intergenic | 25.0% |
| ! | AAGAAAAGTTCAGAATTCTT+AGG | + | chr3_3:90408965-90408984 | None:intergenic | 25.0% |
| ! | TTAACACATGATTTAGAAGA+AGG | - | chr3_3:90409173-90409192 | Msa0482840:CDS | 25.0% |
| ! | TGATCTCATAATTCAAGTAA+GGG | - | chr3_3:90409399-90409418 | Msa0482840:CDS | 25.0% |
| ! | ACTAATATGACACATTGATA+CGG | + | chr3_3:90409621-90409640 | None:intergenic | 25.0% |
| ! | TGAAAATTTATGCATCTAGA+TGG | - | chr3_3:90410357-90410376 | Msa0482840:intron | 25.0% |
| ! | TTACCAAATATTTCCAAGAA+CGG | - | chr3_3:90410380-90410399 | Msa0482840:intron | 25.0% |
| ! | TATTAATAGATCATTCACTG+TGG | + | chr3_3:90410642-90410661 | None:intergenic | 25.0% |
| ! | TCATTTGTATAAGAAAGTGA+AGG | + | chr3_3:90410665-90410684 | None:intergenic | 25.0% |
| ! | ACATAGTTCAAAATTGAAAG+TGG | - | chr3_3:90410859-90410878 | Msa0482840:CDS | 25.0% |
| ! | TGGTAAAAATATATCTCAGA+TGG | - | chr3_3:90411088-90411107 | Msa0482840:CDS | 25.0% |
| ! | TTCAACATTTATTGGAAGTT+AGG | - | chr3_3:90411367-90411386 | Msa0482840:CDS | 25.0% |
| ! | AGATAATTTCATAACCCATT+TGG | - | chr3_3:90411463-90411482 | Msa0482840:CDS | 25.0% |
| ! | CTACCATGTTCAATTAATAT+AGG | - | chr3_3:90411793-90411812 | Msa0482840:CDS | 25.0% |
| ! | AGTCCTATATTAATTGAACA+TGG | + | chr3_3:90411799-90411818 | None:intergenic | 25.0% |
| !! | AGAAAATTTTCTATAGCATG+AGG | - | chr3_3:90411839-90411858 | Msa0482840:CDS | 25.0% |
| ! | AAAATAACGAGCTTGAAATA+TGG | + | chr3_3:90411955-90411974 | None:intergenic | 25.0% |
| !! | TTTCTTAATTTGAAACATGC+AGG | - | chr3_3:90412082-90412101 | Msa0482840:intron | 25.0% |
| ! | CATGATGAATTTGATGAAAA+TGG | - | chr3_3:90412461-90412480 | Msa0482840:five_prime_UTR | 25.0% |
| ! | TGAATTTGATGAAAATGGTT+TGG | - | chr3_3:90412466-90412485 | Msa0482840:five_prime_UTR | 25.0% |
| ! | CATACATTAAAAGATTCTTG+TGG | + | chr3_3:90412728-90412747 | None:intergenic | 25.0% |
| !! | AATCTTTTAATGTATGTGCA+TGG | - | chr3_3:90412732-90412751 | Msa0482840:five_prime_UTR | 25.0% |
| GTTAGGATAGATGACATTAA+TGG | + | chr3_3:90408808-90408827 | None:intergenic | 30.0% | |
| ! | TGTATAATTTGCAAGAGGAA+AGG | + | chr3_3:90408885-90408904 | None:intergenic | 30.0% |
| CAAAGATAGAATTTCTTTGG+TGG | + | chr3_3:90408919-90408938 | None:intergenic | 30.0% | |
| TCCAAGTTTCATAAACTTCA+TGG | + | chr3_3:90409213-90409232 | None:intergenic | 30.0% | |
| ! | GTTCTTTTCTTTGTATATGC+AGG | - | chr3_3:90409353-90409372 | Msa0482840:CDS | 30.0% |
| GTGATCTCATAATTCAAGTA+AGG | - | chr3_3:90409398-90409417 | Msa0482840:CDS | 30.0% | |
| GATCTCATAATTCAAGTAAG+GGG | - | chr3_3:90409400-90409419 | Msa0482840:CDS | 30.0% | |
| AAGTAGATATCTTCTTCACA+AGG | - | chr3_3:90409423-90409442 | Msa0482840:CDS | 30.0% | |
| !! | TGTCATATTAGTGTTGTTTC+TGG | - | chr3_3:90409629-90409648 | Msa0482840:intron | 30.0% |
| CACAAACACAAATACAAACA+CGG | + | chr3_3:90409658-90409677 | None:intergenic | 30.0% | |
| TTTCAACTTCTTCAGTCATT+TGG | + | chr3_3:90409959-90409978 | None:intergenic | 30.0% | |
| ATGACTGAAGAAGTTGAAAA+AGG | - | chr3_3:90409960-90409979 | Msa0482840:intron | 30.0% | |
| GAAAGTTTGAGAATCAAATC+AGG | - | chr3_3:90410218-90410237 | Msa0482840:intron | 30.0% | |
| AGAATCAAATCAGGAAGTAA+AGG | - | chr3_3:90410227-90410246 | Msa0482840:intron | 30.0% | |
| AACTTAGCATAGACCTTTAT+TGG | - | chr3_3:90410273-90410292 | Msa0482840:intron | 30.0% | |
| CTATCATTGTTCTCCAATAA+AGG | + | chr3_3:90410289-90410308 | None:intergenic | 30.0% | |
| ACAATGATAGCAATCAAATC+TGG | - | chr3_3:90410299-90410318 | Msa0482840:intron | 30.0% | |
| TTTCCGTTCTTGGAAATATT+TGG | + | chr3_3:90410386-90410405 | None:intergenic | 30.0% | |
| !! | TGAAGAAGCATTGAGAATAT+TGG | + | chr3_3:90410570-90410589 | None:intergenic | 30.0% |
| AAAGATGGAATTAGCAAGAA+GGG | - | chr3_3:90410595-90410614 | Msa0482840:intron | 30.0% | |
| ACTTTGAATTACAAGAGAGT+AGG | - | chr3_3:90410819-90410838 | Msa0482840:CDS | 30.0% | |
| TGATCATATCTTGCAAATTC+TGG | + | chr3_3:90410971-90410990 | None:intergenic | 30.0% | |
| TACCTTGAGATAAATGTCAA+TGG | + | chr3_3:90411011-90411030 | None:intergenic | 30.0% | |
| ! | AGTCACTCCATTTTATAACT+TGG | - | chr3_3:90411068-90411087 | Msa0482840:CDS | 30.0% |
| AGGATATGAAACAGAATTAG+TGG | - | chr3_3:90411309-90411328 | Msa0482840:CDS | 30.0% | |
| !!! | TATTTTAAGGTCAAGAGAGT+TGG | + | chr3_3:90411339-90411358 | None:intergenic | 30.0% |
| CAACTATATCAGTCAAGATA+AGG | + | chr3_3:90411431-90411450 | None:intergenic | 30.0% | |
| CATCATTATAGAGTTCATTG+AGG | + | chr3_3:90411644-90411663 | None:intergenic | 30.0% | |
| !! | ACACTGAATGAGTTCTAAAT+AGG | + | chr3_3:90411753-90411772 | None:intergenic | 30.0% |
| ATTAATTGAACATGGTAGCT+CGG | + | chr3_3:90411791-90411810 | None:intergenic | 30.0% | |
| GACTAATAAAAACTAGGCTA+TGG | - | chr3_3:90411815-90411834 | Msa0482840:CDS | 30.0% | |
| CTTGAACAACAACTCTTAAA+GGG | + | chr3_3:90412214-90412233 | None:intergenic | 30.0% | |
| ACTTGAACAACAACTCTTAA+AGG | + | chr3_3:90412215-90412234 | None:intergenic | 30.0% | |
| !! | AGAGTTGAAGACTTTGATTT+TGG | + | chr3_3:90412419-90412438 | None:intergenic | 30.0% |
| !! | AATGGTTTGGTAAATGATGA+TGG | - | chr3_3:90412479-90412498 | Msa0482840:five_prime_UTR | 30.0% |
| !! | TTGGTAAATGATGATGGAAT+TGG | - | chr3_3:90412485-90412504 | Msa0482840:five_prime_UTR | 30.0% |
| !!! | AGCATTTTTTTAGGTTGTGT+AGG | + | chr3_3:90412545-90412564 | None:intergenic | 30.0% |
| TGTTTGTAAGGGTAATTTAG+AGG | - | chr3_3:90412640-90412659 | Msa0482840:five_prime_UTR | 30.0% | |
| GTTTGTAAGGGTAATTTAGA+GGG | - | chr3_3:90412641-90412660 | Msa0482840:five_prime_UTR | 30.0% | |
| !! | ATTTTGAGGGAAAATCTCTT+TGG | - | chr3_3:90412779-90412798 | Msa0482840:five_prime_UTR | 30.0% |
| !! | GTGTCATGAAAAGTTGATAT+CGG | - | chr3_3:90412814-90412833 | Msa0482840:five_prime_UTR | 30.0% |
| !! | TGAAAAGTTGATATCGGAAT+AGG | - | chr3_3:90412820-90412839 | Msa0482840:five_prime_UTR | 30.0% |
| GTAGACAAATACAGCAATAT+TGG | + | chr3_3:90412876-90412895 | None:intergenic | 30.0% | |
| ! | AATTCGTATTTTCATGTGTC+TGG | - | chr3_3:90412926-90412945 | Msa0482840:five_prime_UTR | 30.0% |
| TGACTGAATGGACATAACTT+AGG | - | chr3_3:90408753-90408772 | Msa0482840:three_prime_UTR | 35.0% | |
| AATTTGCAAGAGGAAAGGTA+AGG | + | chr3_3:90408880-90408899 | None:intergenic | 35.0% | |
| ! | GAAGGTGTATAATTTGCAAG+AGG | + | chr3_3:90408890-90408909 | None:intergenic | 35.0% |
| TCTACACTGAATTATGCAAG+TGG | - | chr3_3:90409139-90409158 | Msa0482840:CDS | 35.0% | |
| GCCATGAAGTTTATGAAACT+TGG | - | chr3_3:90409209-90409228 | Msa0482840:CDS | 35.0% | |
| TCCAGATACTTTCTACACTT+CGG | - | chr3_3:90409238-90409257 | Msa0482840:CDS | 35.0% | |
| ! | TAGATGATGCATCTCCTTTT+TGG | - | chr3_3:90409308-90409327 | Msa0482840:CDS | 35.0% |
| ACGTATTGTTACATTTGGGA+AGG | - | chr3_3:90409572-90409591 | Msa0482840:intron | 35.0% | |
| ATTTGTGTTTGTGTCTGTGT+CGG | - | chr3_3:90409665-90409684 | Msa0482840:intron | 35.0% | |
| ATTCTGAGCATAATCTTTGC+AGG | + | chr3_3:90409782-90409801 | None:intergenic | 35.0% | |
| !! | ATTTGGTGATGAGATGAATC+AGG | + | chr3_3:90409810-90409829 | None:intergenic | 35.0% |
| AATCAGGAAGTTGGACTATT+TGG | + | chr3_3:90409827-90409846 | None:intergenic | 35.0% | |
| AAACTTGATTCACAAGCTTG+AGG | - | chr3_3:90409983-90410002 | Msa0482840:intron | 35.0% | |
| AATAGTTTCAATGCATCTGC+TGG | + | chr3_3:90410108-90410127 | None:intergenic | 35.0% | |
| TGTCACATAGTCATTCTAGA+AGG | - | chr3_3:90410165-90410184 | Msa0482840:intron | 35.0% | |
| ! | ATAGTCATTCTAGAAGGATG+AGG | - | chr3_3:90410171-90410190 | Msa0482840:intron | 35.0% |
| ! | TAGTCATTCTAGAAGGATGA+GGG | - | chr3_3:90410172-90410191 | Msa0482840:intron | 35.0% |
| TCAAATCAGGAAGTAAAGGA+TGG | - | chr3_3:90410231-90410250 | Msa0482840:intron | 35.0% | |
| ATGATAGCAATCAAATCTGG+TGG | - | chr3_3:90410302-90410321 | Msa0482840:intron | 35.0% | |
| AAGGTTCCTTCAAATCTCAT+TGG | - | chr3_3:90410326-90410345 | Msa0482840:intron | 35.0% | |
| CTTCTTTCTATTTCCGTTCT+TGG | + | chr3_3:90410396-90410415 | None:intergenic | 35.0% | |
| !! | ATGCTTTGAAGTTATTTCGC+TGG | + | chr3_3:90410459-90410478 | None:intergenic | 35.0% |
| GCGAAATAACTTCAAAGCAT+AGG | - | chr3_3:90410459-90410478 | Msa0482840:intron | 35.0% | |
| TTCAAAGCATAGGCTTCTAT+TGG | - | chr3_3:90410469-90410488 | Msa0482840:intron | 35.0% | |
| TGCTTCTTCATCTTCAAAGA+TGG | - | chr3_3:90410580-90410599 | Msa0482840:intron | 35.0% | |
| CAAAGATGGAATTAGCAAGA+AGG | - | chr3_3:90410594-90410613 | Msa0482840:intron | 35.0% | |
| TACAGTCTATGATGTTGAGT+TGG | - | chr3_3:90410685-90410704 | Msa0482840:CDS | 35.0% | |
| !! | TGAGTTGGTGATGACTATAT+TGG | - | chr3_3:90410700-90410719 | Msa0482840:CDS | 35.0% |
| TTGGAACAGTTCATGTTACA+AGG | - | chr3_3:90410719-90410738 | Msa0482840:CDS | 35.0% | |
| TCAAAAGTCTTCAACGATCT+CGG | + | chr3_3:90410767-90410786 | None:intergenic | 35.0% | |
| !! | CGTTGAAGACTTTTGAAAGA+AGG | - | chr3_3:90410771-90410790 | Msa0482840:CDS | 35.0% |
| TTGAATTACAAGAGAGTAGG+AGG | - | chr3_3:90410822-90410841 | Msa0482840:CDS | 35.0% | |
| AGCCATTGACATTTATCTCA+AGG | - | chr3_3:90411006-90411025 | Msa0482840:CDS | 35.0% | |
| TCTGTCTTAATACTCGTTGA+GGG | + | chr3_3:90411139-90411158 | None:intergenic | 35.0% | |
| ATTAGTAGTTCGTTACGAGA+GGG | + | chr3_3:90411197-90411216 | None:intergenic | 35.0% | |
| CATTTATTGGAAGTTAGGTG+TGG | - | chr3_3:90411372-90411391 | Msa0482840:CDS | 35.0% | |
| !!! | CTTCACGTTTTTAGCCAAAT+GGG | + | chr3_3:90411480-90411499 | None:intergenic | 35.0% |
| !!! | TCTTCACGTTTTTAGCCAAA+TGG | + | chr3_3:90411481-90411500 | None:intergenic | 35.0% |
| ! | ACATAGTACTGGAACTATGA+TGG | + | chr3_3:90411534-90411553 | None:intergenic | 35.0% |
| CACACTATCAATTCATGAGA+AGG | + | chr3_3:90411557-90411576 | None:intergenic | 35.0% | |
| CATTATAGAGTTCATTGAGG+TGG | + | chr3_3:90411641-90411660 | None:intergenic | 35.0% | |
| !! | CTGAATGAGTTCTAAATAGG+AGG | + | chr3_3:90411750-90411769 | None:intergenic | 35.0% |
| ATACGTGAATATGTGACTAC+TGG | - | chr3_3:90412016-90412035 | Msa0482840:intron | 35.0% | |
| !! | AAAGCATTGCTTACAACACA+TGG | - | chr3_3:90412302-90412321 | Msa0482840:intron | 35.0% |
| AGCTCTACTACAAGTATTCA+AGG | - | chr3_3:90412359-90412378 | Msa0482840:CDS | 35.0% | |
| TACTACAAGTATTCAAGGTG+AGG | - | chr3_3:90412364-90412383 | Msa0482840:CDS | 35.0% | |
| GTATTCAAGGTGAGGATAAT+TGG | - | chr3_3:90412372-90412391 | Msa0482840:CDS | 35.0% | |
| ! | CAAAAAGCCTTGTAACTTGT+AGG | - | chr3_3:90412697-90412716 | Msa0482840:five_prime_UTR | 35.0% |
| ! | GGATTTTCCTACAAGTTACA+AGG | + | chr3_3:90412707-90412726 | None:intergenic | 35.0% |
| GATATCGGAATAGGAATCTT+TGG | - | chr3_3:90412829-90412848 | Msa0482840:five_prime_UTR | 35.0% | |
| ! | TTTTGTCAAGACACAAGTGT+TGG | + | chr3_3:90412905-90412924 | None:intergenic | 35.0% |
| TTTCTTTGGTGGAGAGAAGA+AGG | + | chr3_3:90408908-90408927 | None:intergenic | 40.0% | |
| ! | ATACACTCTGAGAACACTGT+CGG | - | chr3_3:90408994-90409013 | Msa0482840:three_prime_UTR | 40.0% |
| !! | TCCGAAGTGTAGAAAGTATC+TGG | + | chr3_3:90409242-90409261 | None:intergenic | 40.0% |
| TCTACACTTCGGAAGCTATA+AGG | - | chr3_3:90409249-90409268 | Msa0482840:CDS | 40.0% | |
| ! | GTACTGACGCTTCAAATTGA+AGG | - | chr3_3:90409518-90409537 | Msa0482840:intron | 40.0% |
| CCAAATGTAACAATACGTGC+CGG | + | chr3_3:90409570-90409589 | None:intergenic | 40.0% | |
| CGGCACGTATTGTTACATTT+GGG | - | chr3_3:90409568-90409587 | Msa0482840:intron | 40.0% | |
| TCTTTGCAGGCATAAGCATT+TGG | + | chr3_3:90409769-90409788 | None:intergenic | 40.0% | |
| ! | AGTCCAACTTCCTGATTTTC+CGG | - | chr3_3:90409830-90409849 | Msa0482840:intron | 40.0% |
| TTGTGTGCTAAGTTCTGCTA+TGG | - | chr3_3:90409873-90409892 | Msa0482840:intron | 40.0% | |
| CTTGCAGCTACAATGTTGTA+AGG | + | chr3_3:90409918-90409937 | None:intergenic | 40.0% | |
| TTCAATTCTTGCATCCTCCA+TGG | - | chr3_3:90410011-90410030 | Msa0482840:intron | 40.0% | |
| CTATGATATCCTTCCAACCA+TGG | + | chr3_3:90410031-90410050 | None:intergenic | 40.0% | |
| !! | AAAAGCGTTGCATTTGTGGT+CGG | - | chr3_3:90410067-90410086 | Msa0482840:intron | 40.0% |
| GTGACAAACTCACCTTTGTA+GGG | + | chr3_3:90410151-90410170 | None:intergenic | 40.0% | |
| TGTGACAAACTCACCTTTGT+AGG | + | chr3_3:90410152-90410171 | None:intergenic | 40.0% | |
| AATCAGGAAGTAAAGGATGG+TGG | - | chr3_3:90410234-90410253 | Msa0482840:intron | 40.0% | |
| ATCAGGAAGTAAAGGATGGT+GGG | - | chr3_3:90410235-90410254 | Msa0482840:intron | 40.0% | |
| GCATCACCAATGAGATTTGA+AGG | + | chr3_3:90410335-90410354 | None:intergenic | 40.0% | |
| ! | AGCTTGCTTCCAACAGAAAA+AGG | - | chr3_3:90410503-90410522 | Msa0482840:intron | 40.0% |
| ATGGAATTAGCAAGAAGGGT+AGG | - | chr3_3:90410599-90410618 | Msa0482840:CDS | 40.0% | |
| AAGAAGGGTAGGACTTCAAT+TGG | - | chr3_3:90410610-90410629 | Msa0482840:CDS | 40.0% | |
| TGAACTATGTGATGCTGAAG+AGG | + | chr3_3:90410849-90410868 | None:intergenic | 40.0% | |
| ATTGAAAGTGGCAAAGCTTG+TGG | - | chr3_3:90410871-90410890 | Msa0482840:CDS | 40.0% | |
| CTCTGTCTTAATACTCGTTG+AGG | + | chr3_3:90411140-90411159 | None:intergenic | 40.0% | |
| CTCAACGAGTATTAAGACAG+AGG | - | chr3_3:90411138-90411157 | Msa0482840:CDS | 40.0% | |
| TTAATAGGAGGGATTAAGCG+CGG | + | chr3_3:90411166-90411185 | None:intergenic | 40.0% | |
| TTAGTAGTTCGTTACGAGAG+GGG | + | chr3_3:90411196-90411215 | None:intergenic | 40.0% | |
| GATTAGTAGTTCGTTACGAG+AGG | + | chr3_3:90411198-90411217 | None:intergenic | 40.0% | |
| !! | GTCAGGCTAAAATTTCTGGT+GGG | + | chr3_3:90411403-90411422 | None:intergenic | 40.0% |
| ! | AGTCAGGCTAAAATTTCTGG+TGG | + | chr3_3:90411404-90411423 | None:intergenic | 40.0% |
| GTCAGTCAGGCTAAAATTTC+TGG | + | chr3_3:90411407-90411426 | None:intergenic | 40.0% | |
| TCATGAGAAGGACATAGTAC+TGG | + | chr3_3:90411545-90411564 | None:intergenic | 40.0% | |
| GAGTTCATTGAGGTGGAAAT+TGG | + | chr3_3:90411634-90411653 | None:intergenic | 40.0% | |
| !! | GAGTTCTAAATAGGAGGTTC+TGG | + | chr3_3:90411744-90411763 | None:intergenic | 40.0% |
| ! | TGAGGCGTCACTATAATGAT+TGG | - | chr3_3:90411857-90411876 | Msa0482840:intron | 40.0% |
| CTTTCACTCTTGTTGAGTTC+TGG | + | chr3_3:90412113-90412132 | None:intergenic | 40.0% | |
| CAGAACTCAACAAGAGTGAA+AGG | - | chr3_3:90412111-90412130 | Msa0482840:intron | 40.0% | |
| TGACTGCAAAAAGCTCTCAA+TGG | - | chr3_3:90412154-90412173 | Msa0482840:intron | 40.0% | |
| TGCGTTGTTGTATGTTTCGA+TGG | + | chr3_3:90412335-90412354 | None:intergenic | 40.0% | |
| ! | GAGGATAATTGGAGTGTTTC+TGG | - | chr3_3:90412383-90412402 | Msa0482840:CDS | 40.0% |
| !! | TCTAAGAATGAAGCTTGCTG+AGG | - | chr3_3:90412436-90412455 | Msa0482840:five_prime_UTR | 40.0% |
| ! | TTGTGTAGGAAGAGCACAAA+TGG | + | chr3_3:90412531-90412550 | None:intergenic | 40.0% |
| !! | TTGGTGTCAGTGACAAATCA+TGG | - | chr3_3:90412848-90412867 | Msa0482840:five_prime_UTR | 40.0% |
| ! | TGGTGTCAGTGACAAATCAT+GGG | - | chr3_3:90412849-90412868 | Msa0482840:five_prime_UTR | 40.0% |
| ! | GGAAGAGGCTTTGTAGTTGT+AGG | + | chr3_3:90408859-90408878 | None:intergenic | 45.0% |
| CAAGAGGAAAGGTAAGGAAG+AGG | + | chr3_3:90408874-90408893 | None:intergenic | 45.0% | |
| CAGTGTTCTCAGAGTGTATG+AGG | + | chr3_3:90408993-90409012 | None:intergenic | 45.0% | |
| TTCTGCTAAGCAAGCTCAAG+TGG | + | chr3_3:90409038-90409057 | None:intergenic | 45.0% | |
| CCGGCACGTATTGTTACATT+TGG | - | chr3_3:90409567-90409586 | Msa0482840:intron | 45.0% | |
| CATAAGCATTTGGACAGCAG+GGG | + | chr3_3:90409759-90409778 | None:intergenic | 45.0% | |
| GCATAAGCATTTGGACAGCA+GGG | + | chr3_3:90409760-90409779 | None:intergenic | 45.0% | |
| ! | TGGTGATGAGATGAATCAGG+AGG | + | chr3_3:90409807-90409826 | None:intergenic | 45.0% |
| ! | GTCCAACTTCCTGATTTTCC+GGG | - | chr3_3:90409831-90409850 | Msa0482840:intron | 45.0% |
| ATTCTTGCATCCTCCATGGT+TGG | - | chr3_3:90410015-90410034 | Msa0482840:intron | 45.0% | |
| TGATATCCTTCCAACCATGG+AGG | + | chr3_3:90410028-90410047 | None:intergenic | 45.0% | |
| ! | AATGCAACGCTTTTGTGGTC+TGG | + | chr3_3:90410061-90410080 | None:intergenic | 45.0% |
| ! | CCACAAATGCAACGCTTTTG+TGG | + | chr3_3:90410066-90410085 | None:intergenic | 45.0% |
| !! | CCACAAAAGCGTTGCATTTG+TGG | - | chr3_3:90410063-90410082 | Msa0482840:intron | 45.0% |
| ACAAACTCACCTTTGTAGGG+TGG | + | chr3_3:90410148-90410167 | None:intergenic | 45.0% | |
| AGCAATCAAATCTGGTGGCA+AGG | - | chr3_3:90410307-90410326 | Msa0482840:intron | 45.0% | |
| GTCTGAGTTAGACTCAGACT+CGG | + | chr3_3:90410432-90410451 | None:intergenic | 45.0% | |
| GTCTGAGTCTAACTCAGACT+CGG | - | chr3_3:90410433-90410452 | Msa0482840:intron | 45.0% | |
| ! | GAAACAGCGCCTTTTTCTGT+TGG | + | chr3_3:90410515-90410534 | None:intergenic | 45.0% |
| AAGGGTAGGACTTCAATTGG+AGG | - | chr3_3:90410613-90410632 | Msa0482840:CDS | 45.0% | |
| AAGTCTTCAACGATCTCGGA+GGG | + | chr3_3:90410763-90410782 | None:intergenic | 45.0% | |
| AAAGTCTTCAACGATCTCGG+AGG | + | chr3_3:90410764-90410783 | None:intergenic | 45.0% | |
| TGAAAGAAGGCGATCACGTT+CGG | - | chr3_3:90410784-90410803 | Msa0482840:CDS | 45.0% | |
| AAGTGGCAAAGCTTGTGGAT+AGG | - | chr3_3:90410876-90410895 | Msa0482840:CDS | 45.0% | |
| CATCTCTTGCAACTTCCTGA+AGG | + | chr3_3:90410904-90410923 | None:intergenic | 45.0% | |
| TGTAGCTCAGTGATACGAGT+TGG | - | chr3_3:90411111-90411130 | Msa0482840:CDS | 45.0% | |
| GTAGCTCAGTGATACGAGTT+GGG | - | chr3_3:90411112-90411131 | Msa0482840:CDS | 45.0% | |
| GGGGGAAATCGTTAATAGGA+GGG | + | chr3_3:90411177-90411196 | None:intergenic | 45.0% | |
| AGGGGGAAATCGTTAATAGG+AGG | + | chr3_3:90411178-90411197 | None:intergenic | 45.0% | |
| GAGAGGGGGAAATCGTTAAT+AGG | + | chr3_3:90411181-90411200 | None:intergenic | 45.0% | |
| TAGTAGTTCGTTACGAGAGG+GGG | + | chr3_3:90411195-90411214 | None:intergenic | 45.0% | |
| GTCAAGATAAGGAGTCAGTC+AGG | + | chr3_3:90411420-90411439 | None:intergenic | 45.0% | |
| ATTGAACATGGTAGCTCGGT+TGG | + | chr3_3:90411787-90411806 | None:intergenic | 45.0% | |
| GTCAGTTCATTGGTAGGTGT+TGG | - | chr3_3:90411913-90411932 | Msa0482840:intron | 45.0% | |
| !! | GGTGTTGGCTCAAAATTCGA+CGG | - | chr3_3:90411928-90411947 | Msa0482840:intron | 45.0% |
| GGTGTCAGTGACAAATCATG+GGG | - | chr3_3:90412850-90412869 | Msa0482840:five_prime_UTR | 45.0% | |
| !!! | ATGTTTTTTTATTTTTATTT+TGG | - | chr3_3:90411668-90411687 | Msa0482840:CDS | 5.0% |
| !!! | TATAATAATAATAATTTTGA+GGG | - | chr3_3:90412766-90412785 | Msa0482840:five_prime_UTR | 5.0% |
| GTCAGACACTTACACGACAC+CGG | - | chr3_3:90409548-90409567 | Msa0482840:intron | 50.0% | |
| GGCATAAGCATTTGGACAGC+AGG | + | chr3_3:90409761-90409780 | None:intergenic | 50.0% | |
| CACCCGGAAAATCAGGAAGT+TGG | + | chr3_3:90409836-90409855 | None:intergenic | 50.0% | |
| ! | CAACTTCCTGATTTTCCGGG+TGG | - | chr3_3:90409834-90409853 | Msa0482840:intron | 50.0% |
| TCAAATGCTTCCACTCCACC+CGG | + | chr3_3:90409852-90409871 | None:intergenic | 50.0% | |
| TTGCATCCTCCATGGTTGGA+AGG | - | chr3_3:90410019-90410038 | Msa0482840:intron | 50.0% | |
| CATTTGTGGTCGGAAGACCT+GGG | - | chr3_3:90410077-90410096 | Msa0482840:intron | 50.0% | |
| TGCATCTGCTGGTAATTCCC+AGG | + | chr3_3:90410097-90410116 | None:intergenic | 50.0% | |
| AGTCTTGAGCCACCCTACAA+AGG | - | chr3_3:90410136-90410155 | Msa0482840:intron | 50.0% | |
| GCTTGTGGATAGGTACCTTC+AGG | - | chr3_3:90410886-90410905 | Msa0482840:CDS | 50.0% | |
| CATTCGCGCAGTCAGTTCAT+TGG | - | chr3_3:90411903-90411922 | Msa0482840:intron | 50.0% | |
| ! | AATGGAAGCGTGCATGCATG+CGG | - | chr3_3:90412172-90412191 | Msa0482840:intron | 50.0% |
| CAAGCTAGAGCAGCATCATC+TGG | - | chr3_3:90412248-90412267 | Msa0482840:intron | 50.0% | |
| ! | TCCTGATTTTCCGGGTGGAG+TGG | - | chr3_3:90409839-90409858 | Msa0482840:intron | 55.0% |
| TCCACTCCACCCGGAAAATC+AGG | + | chr3_3:90409843-90409862 | None:intergenic | 55.0% | |
| GCATTTGTGGTCGGAAGACC+TGG | - | chr3_3:90410076-90410095 | Msa0482840:intron | 55.0% | |
| ! | AACGATCTCGGAGGGCTAGT+TGG | + | chr3_3:90410755-90410774 | None:intergenic | 55.0% |
| ! | ACATGGTAGCTCGGTTGGTG+AGG | + | chr3_3:90411782-90411801 | None:intergenic | 55.0% |
| CGCGCAGTCAGTTCATTGGT+AGG | - | chr3_3:90411907-90411926 | Msa0482840:intron | 55.0% | |
| GCTAGAGCAGCATCATCTGG+TGG | - | chr3_3:90412251-90412270 | Msa0482840:intron | 55.0% | |
| !! | GATCTCGGAGGGCTAGTTGG+TGG | + | chr3_3:90410752-90410771 | None:intergenic | 60.0% |
| GAACTGACTGCGCGAATGCG+AGG | + | chr3_3:90411901-90411920 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 90408654 | 90412970 | 90408654 | ID=Msa0482840;Name=Msa0482840 |
| chr3_3 | mRNA | 90408654 | 90412970 | 90408654 | ID=Msa0482840-mRNA-1;Parent=Msa0482840;Name=Msa0482840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=558|1|1|1|1|1|4|360|636 |
| chr3_3 | exon | 90408654 | 90409520 | 90408654 | ID=Msa0482840-mRNA-1:exon:26379;Parent=Msa0482840-mRNA-1 |
| chr3_3 | exon | 90410597 | 90411871 | 90410597 | ID=Msa0482840-mRNA-1:exon:26378;Parent=Msa0482840-mRNA-1 |
| chr3_3 | exon | 90412180 | 90412249 | 90412180 | ID=Msa0482840-mRNA-1:exon:26377;Parent=Msa0482840-mRNA-1 |
| chr3_3 | exon | 90412354 | 90412970 | 90412354 | ID=Msa0482840-mRNA-1:exon:26376;Parent=Msa0482840-mRNA-1 |
| chr3_3 | five_prime_UTR | 90412413 | 90412970 | 90412413 | ID=Msa0482840-mRNA-1:five_prime_utr;Parent=Msa0482840-mRNA-1 |
| chr3_3 | CDS | 90412354 | 90412412 | 90412354 | ID=Msa0482840-mRNA-1:cds;Parent=Msa0482840-mRNA-1 |
| chr3_3 | CDS | 90412180 | 90412249 | 90412180 | ID=Msa0482840-mRNA-1:cds;Parent=Msa0482840-mRNA-1 |
| chr3_3 | CDS | 90410597 | 90411871 | 90410597 | ID=Msa0482840-mRNA-1:cds;Parent=Msa0482840-mRNA-1 |
| chr3_3 | CDS | 90409014 | 90409520 | 90409014 | ID=Msa0482840-mRNA-1:cds;Parent=Msa0482840-mRNA-1 |
| chr3_3 | three_prime_UTR | 90408654 | 90409013 | 90408654 | ID=Msa0482840-mRNA-1:three_prime_utr;Parent=Msa0482840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
