AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0881480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881480 MtrunA17_Chr2g0279481 98.978 685 6 1 1 684 1 685 0.0 1411
Msa0881480 MtrunA17_Chr4g0050021 80.904 686 112 9 1 684 1 669 0.0 1110
Msa0881480 MtrunA17_Chr8g0382231 41.888 678 300 12 3 663 13 613 2.61e-180 527
Msa0881480 MtrunA17_Chr2g0303541 38.889 666 357 11 23 677 5 631 1.87e-151 453
Msa0881480 MtrunA17_Chr2g0285511 38.202 623 325 11 19 635 1 569 5.81e-137 415
Msa0881480 MtrunA17_Chr2g0320691 37.157 619 332 12 27 632 6 580 1.21e-131 402
Msa0881480 MtrunA17_Chr5g0401341 41.231 536 248 11 23 548 5 483 4.66e-129 395
Msa0881480 MtrunA17_Chr5g0401451 36.780 590 298 7 32 612 28 551 9.04e-126 387
Msa0881480 MtrunA17_Chr8g0374011 35.945 651 331 12 34 639 10 619 1.31e-125 387
Msa0881480 MtrunA17_Chr4g0010091 36.084 618 332 9 33 645 24 583 4.26e-125 384
Msa0881480 MtrunA17_Chr1g0207461 38.716 545 276 11 23 558 5 500 2.13e-121 375
Msa0881480 MtrunA17_Chr1g0150191 38.806 536 267 10 19 547 6 487 3.95e-121 374
Msa0881480 MtrunA17_Chr1g0181181 37.430 537 277 8 23 555 5 486 3.40e-119 367
Msa0881480 MtrunA17_Chr8g0367891 40.217 552 240 10 23 552 5 488 4.23e-119 368
Msa0881480 MtrunA17_Chr1g0191711 34.171 597 286 13 33 622 47 543 1.29e-116 360
Msa0881480 MtrunA17_Chr4g0053841 36.227 599 300 8 32 620 1 527 2.67e-115 358
Msa0881480 MtrunA17_Chr4g0076521 37.665 531 274 8 23 552 5 479 5.30e-111 347
Msa0881480 MtrunA17_Chr5g0412591 38.156 553 255 11 23 552 5 493 1.02e-109 344
Msa0881480 MtrunA17_Chr1g0195911 32.609 644 355 12 20 647 13 593 1.28e-109 344
Msa0881480 MtrunA17_Chr1g0199631 36.007 586 315 11 62 641 8 539 2.30e-109 342
Msa0881480 MtrunA17_Chr7g0245201 35.605 587 308 15 36 614 53 577 2.66e-109 344
Msa0881480 MtrunA17_Chr7g0268781 31.523 663 382 13 20 666 13 619 6.93e-108 340
Msa0881480 MtrunA17_Chr3g0108331 32.848 618 324 9 32 646 12 541 7.19e-102 322
Msa0881480 MtrunA17_Chr5g0432861 34.165 521 284 7 32 552 13 474 7.87e-102 323
Msa0881480 MtrunA17_Chr2g0290741 35.370 540 278 8 23 559 5 476 1.21e-100 320
Msa0881480 MtrunA17_Chr4g0003891 37.250 400 194 7 233 629 46 391 3.11e-80 262
Msa0881480 MtrunA17_Chr2g0332281 35.232 474 239 7 219 684 10 423 8.94e-79 257
Msa0881480 MtrunA17_Chr4g0037661 28.453 601 333 17 47 626 6 530 2.38e-55 198
Msa0881480 MtrunA17_Chr1g0163311 27.725 523 269 14 54 546 14 457 8.86e-52 187
Msa0881480 MtrunA17_Chr4g0023801 27.243 602 356 17 53 644 14 543 2.26e-50 184
Msa0881480 MtrunA17_Chr1g0206621 45.255 137 73 1 51 185 75 211 1.19e-31 123
Msa0881480 MtrunA17_Chr2g0280541 26.258 457 259 11 110 560 1 385 1.17e-30 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881480 AT5G64330.1 68.138 725 154 15 1 654 2 720 0.0 944
Msa0881480 AT5G64330.2 68.252 652 133 14 1 584 2 647 0.0 844
Msa0881480 AT5G64330.3 68.430 586 124 11 57 584 6 588 0.0 759
Msa0881480 AT5G10250.2 39.124 639 278 12 30 643 36 588 1.65e-152 456
Msa0881480 AT5G10250.1 39.110 629 277 12 30 643 36 573 3.30e-149 447
Msa0881480 AT1G30440.1 38.148 637 348 10 23 643 5 611 2.56e-145 439
Msa0881480 AT5G03250.1 37.739 628 321 14 25 642 7 574 1.65e-131 400
Msa0881480 AT5G13600.1 37.500 616 319 12 19 629 1 555 1.78e-126 387
Msa0881480 AT5G67440.3 40.797 527 239 9 39 556 22 484 4.19e-124 381
Msa0881480 AT5G67440.1 40.797 527 239 9 39 556 22 484 4.19e-124 381
Msa0881480 AT3G44820.1 35.738 610 348 9 27 624 6 583 1.90e-121 377
Msa0881480 AT5G67385.1 39.205 528 262 7 32 557 13 483 3.74e-121 374
Msa0881480 AT1G67900.5 38.995 577 284 8 23 578 5 534 2.77e-120 373
Msa0881480 AT1G67900.1 38.995 577 284 8 23 578 5 534 2.77e-120 373
Msa0881480 AT1G67900.3 38.995 577 284 8 23 578 5 534 2.77e-120 373
Msa0881480 AT1G67900.6 38.995 577 284 8 23 578 5 534 2.77e-120 373
Msa0881480 AT1G67900.2 38.995 577 284 8 23 578 5 534 2.77e-120 373
Msa0881480 AT1G67900.4 38.995 577 284 8 23 578 5 534 2.77e-120 373
Msa0881480 AT2G14820.2 38.095 546 278 11 23 558 5 500 6.77e-116 362
Msa0881480 AT2G14820.1 38.095 546 278 11 23 558 5 500 6.77e-116 362
Msa0881480 AT4G31820.1 37.782 532 257 12 23 548 5 468 6.97e-116 359
Msa0881480 AT5G48800.1 35.410 610 327 7 37 642 34 580 1.67e-114 357
Msa0881480 AT5G67440.2 40.237 507 230 9 59 556 5 447 3.34e-114 354
Msa0881480 AT4G37590.1 36.348 597 280 13 23 605 5 515 1.34e-111 348
Msa0881480 AT1G03010.1 32.428 663 339 14 21 647 14 603 4.45e-111 349
Msa0881480 AT3G08570.1 34.740 616 324 12 40 646 30 576 8.08e-111 348
Msa0881480 AT1G03010.2 33.022 642 322 13 42 647 7 576 5.09e-110 345
Msa0881480 AT5G66560.1 33.333 687 343 15 28 646 3 642 6.88e-110 347
Msa0881480 AT1G03010.3 33.022 642 322 13 42 647 33 602 1.62e-109 345
Msa0881480 AT2G30520.1 35.163 583 303 8 32 614 18 525 3.25e-109 343
Msa0881480 AT5G67385.4 38.788 495 244 7 65 557 1 438 6.06e-108 338
Msa0881480 AT5G67385.5 38.788 495 244 7 65 557 1 438 6.06e-108 338
Msa0881480 AT5G67385.2 38.788 495 244 7 65 557 1 438 6.06e-108 338
Msa0881480 AT5G67385.3 38.788 495 244 7 65 557 1 438 6.06e-108 338
Msa0881480 AT5G47800.3 36.571 525 277 7 23 546 5 474 4.95e-105 331
Msa0881480 AT5G47800.1 36.571 525 277 7 23 546 5 474 4.95e-105 331
Msa0881480 AT5G47800.4 36.571 525 277 7 23 546 5 474 4.95e-105 331
Msa0881480 AT5G47800.2 36.571 525 277 7 23 546 118 587 1.90e-103 330
Msa0881480 AT5G66560.3 33.687 659 322 15 56 646 2 613 1.31e-102 327
Msa0881480 AT2G47860.1 32.558 645 324 16 17 624 2 572 1.34e-102 327
Msa0881480 AT3G26490.1 35.856 555 279 12 25 552 7 511 8.44e-102 323
Msa0881480 AT3G26490.3 35.856 555 279 12 25 552 7 511 8.44e-102 323
Msa0881480 AT3G26490.4 35.856 555 279 12 25 552 7 511 8.44e-102 323
Msa0881480 AT2G23050.1 36.704 534 242 10 23 548 5 450 1.11e-101 320
Msa0881480 AT3G08660.1 33.929 616 302 16 40 646 30 549 1.27e-101 323
Msa0881480 AT4G31820.2 37.474 483 229 11 71 548 1 415 1.69e-101 320
Msa0881480 AT5G66560.4 35.214 585 308 13 86 646 66 603 5.19e-99 317
Msa0881480 AT2G47860.3 31.437 668 324 17 17 624 2 595 1.95e-97 314
Msa0881480 AT2G30520.2 34.122 592 308 10 64 649 2 517 1.19e-95 306
Msa0881480 AT2G30520.3 34.122 592 308 10 64 649 2 517 1.19e-95 306
Msa0881480 AT3G50840.1 33.225 614 326 13 34 639 5 542 1.52e-94 304
Msa0881480 AT3G08660.3 34.862 545 257 13 86 621 15 470 1.79e-91 294
Msa0881480 AT5G03250.2 35.057 522 271 13 129 642 1 462 7.66e-89 286
Msa0881480 AT3G49970.1 33.214 560 260 10 56 614 6 452 4.70e-88 285
Msa0881480 AT3G49970.2 33.214 560 260 10 56 614 6 452 4.70e-88 285
Msa0881480 AT3G50840.2 32.990 582 307 12 65 639 1 506 3.38e-83 273
Msa0881480 AT3G50840.3 32.990 582 307 12 65 639 1 506 3.38e-83 273
Msa0881480 AT5G66560.2 34.170 518 240 12 34 497 9 479 3.46e-79 261
Msa0881480 AT3G15570.1 33.546 471 247 9 233 684 29 452 2.39e-78 258
Msa0881480 AT3G26490.2 33.533 501 256 12 25 498 7 457 1.35e-76 254
Msa0881480 AT2G47860.4 33.140 516 236 14 17 497 2 443 1.65e-76 252
Msa0881480 AT1G52770.1 33.532 504 258 13 206 684 3 454 2.88e-75 249
Msa0881480 AT3G08660.2 34.115 469 219 11 40 499 30 417 7.32e-75 248
Msa0881480 AT2G47860.6 31.540 539 237 15 17 497 2 466 2.33e-71 239
Msa0881480 AT2G23050.2 34.679 421 187 8 129 548 1 334 4.23e-69 230
Msa0881480 AT2G47860.5 30.153 524 268 12 129 624 1 454 1.69e-65 225
Msa0881480 AT2G47860.2 30.153 524 268 12 129 624 1 454 1.69e-65 225
Msa0881480 AT1G50280.1 28.770 504 289 10 53 542 13 460 1.60e-49 181
Msa0881480 AT1G50280.2 29.399 466 264 9 86 542 18 427 1.01e-48 179
Msa0881480 AT5G17580.2 27.451 510 291 11 46 549 22 458 2.37e-41 159
Msa0881480 AT5G17580.1 27.255 510 292 10 46 549 7 443 4.95e-41 158
Msa0881480 AT3G03510.1 26.344 558 276 16 98 648 8 437 1.31e-39 152
Msa0881480 AT3G22104.1 26.869 495 275 13 46 533 6 420 1.52e-39 153
Msa0881480 AT3G19850.1 35.115 262 152 3 341 602 273 516 3.27e-38 150
Msa0881480 AT3G19850.1 32.143 168 98 2 86 240 52 216 8.63e-17 84.7
Msa0881480 AT5G48130.1 33.333 240 143 5 37 272 32 258 5.68e-36 144
Msa0881480 AT5G48130.1 34.921 126 79 1 432 557 356 478 1.41e-18 90.5
Msa0881480 AT3G22104.4 25.532 423 231 10 115 533 3 345 3.46e-27 115
Msa0881480 AT3G22104.2 25.532 423 231 10 115 533 3 345 3.46e-27 115
Msa0881480 AT3G22104.3 25.532 423 231 10 115 533 3 345 3.46e-27 115
Msa0881480 AT3G49900.2 36.306 157 88 5 34 184 55 205 8.92e-16 81.3
Msa0881480 AT3G49900.1 36.306 157 88 5 34 184 55 205 8.99e-16 81.3

Find 131 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACAGCAGGGAACATTTC+TGG 0.175923 6_1:-28667925 Msa0881480:CDS
CCACTCTTGCTTTAGCATTA+AGG 0.194475 6_1:+28666936 None:intergenic
GAGAATGGCAATTATGTTAA+AGG 0.217758 6_1:-28667185 Msa0881480:CDS
TAGAGTCATTACTGCTATTA+AGG 0.220033 6_1:-28667521 Msa0881480:CDS
TCTTTCATTGACAAAGTTTC+AGG 0.239657 6_1:-28666867 Msa0881480:CDS
AAAATGAAAGGCTTCCATTA+AGG 0.246972 6_1:-28666099 Msa0881480:CDS
ATGCATCAATTGAGAGTTTC+TGG 0.254350 6_1:+28666137 None:intergenic
AGCAATTCCATAGCAGAATT+TGG 0.262431 6_1:+28667954 None:intergenic
TCTTTACCTGTTCTGCAAAT+AGG 0.263165 6_1:+28666062 None:intergenic
AGTTATGAGTTTATTAGATT+TGG 0.263352 6_1:+28668955 None:intergenic
TAGCAGTTGTCCATCCTTCT+TGG 0.266447 6_1:+28665936 None:intergenic
TTAATTCCTTGTTATAATAA+AGG 0.275835 6_1:-28667088 Msa0881480:CDS
AAAATTGTTGGAGGTGTTAC+AGG 0.276384 6_1:+28668881 None:intergenic
ATTACTGCTATTAAGGTAAA+AGG 0.277571 6_1:-28667514 Msa0881480:CDS
ACTTGCACAACTACCCTTAA+TGG 0.282327 6_1:+28666085 None:intergenic
GGAATGAGATTTGAGTTAAT+TGG 0.282402 6_1:-28667493 Msa0881480:CDS
ACAAAATGTACTGTTCTAAA+AGG 0.286994 6_1:+28668725 None:intergenic
CTAATCCAAAAGGGATAAAA+TGG 0.293832 6_1:-28667690 Msa0881480:CDS
TTTGGAGCTTCAAAATGATA+TGG 0.295839 6_1:-28665861 Msa0881480:CDS
TAATGCATTATGCAACTAAA+TGG 0.300901 6_1:-28667462 Msa0881480:CDS
TTTCATGCACTTTCCTTCTT+AGG 0.307187 6_1:-28667213 Msa0881480:CDS
CTGTTCTGTTCTGGAGCTGC+TGG 0.323542 6_1:+28665689 None:intergenic
GGTAGCGGTAGTTGGATTAA+AGG 0.337161 6_1:-28667361 Msa0881480:CDS
GAGTGTGAAAGCTAAGTATT+TGG 0.342226 6_1:-28665879 Msa0881480:CDS
GTAGTAGTGGTAGCGGTAGT+TGG 0.346625 6_1:-28667369 Msa0881480:CDS
AGCTATTGATTCCTATCTTA+AGG 0.367444 6_1:-28666789 Msa0881480:intron
CCTTCTTAGGCTTCTGAGAA+TGG 0.374018 6_1:-28667200 Msa0881480:CDS
AAATGAAAGGCTTCCATTAA+GGG 0.389974 6_1:-28666098 Msa0881480:CDS
TCACAGGTTCTAGCTGATTC+AGG 0.390652 6_1:+28666827 None:intergenic
TTCTGAGAAACATATGGGAT+TGG 0.397986 6_1:-28666966 Msa0881480:CDS
GCAAGTCCTATTTGCAGAAC+AGG 0.399215 6_1:-28666068 Msa0881480:CDS
TTGAAGATGTTTCAATCCTT+AGG 0.401499 6_1:-28667558 Msa0881480:CDS
TCTGAGAAACATATGGGATT+GGG 0.407788 6_1:-28666965 Msa0881480:CDS
CATATATGAATCACGCGAAC+CGG 0.412776 6_1:-28668037 Msa0881480:CDS
TGAGTTTATTAGATTTGGAT+TGG 0.415940 6_1:+28668960 None:intergenic
GGAAGTAATTACCTTAAGAT+AGG 0.421004 6_1:+28666778 None:intergenic
ATATCATTATTATTCCATCT+TGG 0.423799 6_1:+28667631 None:intergenic
GATTCAACATCTTTCAAAGA+AGG 0.425349 6_1:+28666019 None:intergenic
TGTTACAGGCTGTGATGAAA+TGG 0.431885 6_1:+28668895 None:intergenic
CTTTCATGCTCAGAAAGTGT+TGG 0.432520 6_1:+28666187 None:intergenic
TAAATAAGTTGAGTGAGAAT+AGG 0.435374 6_1:+28668781 None:intergenic
TTTCCACTTCGAGATATAAG+AGG 0.442402 6_1:+28668072 None:intergenic
TTCTTCAAAGAGGTCACTCT+TGG 0.443338 6_1:-28668586 Msa0881480:intron
AACATCTTTCAAAGAAGGGT+TGG 0.446054 6_1:+28666024 None:intergenic
GGTTACTGAATTAGAGAAAA+GGG 0.454667 6_1:-28667149 Msa0881480:CDS
ATAACTATCTTATTCACATC+CGG 0.457064 6_1:+28668018 None:intergenic
AGGCATAAAGACACTGAAAC+TGG 0.458972 6_1:-28669028 Msa0881480:five_prime_UTR
AAAGCTTGTGCTAATCCAAA+AGG 0.459789 6_1:-28667700 Msa0881480:CDS
ATTGCTGTTGATTTAACAGC+AGG 0.465524 6_1:-28667937 Msa0881480:CDS
ATCAACTAGTTCCTCCTGAT+TGG 0.465695 6_1:-28667585 Msa0881480:CDS
GAAGCGACTCTGCCGCGTAA+TGG 0.466966 6_1:-28666164 Msa0881480:CDS
TCAACTGCAAGACACAAGTA+TGG 0.473817 6_1:-28668656 Msa0881480:CDS
ATTCAACATCTTTCAAAGAA+GGG 0.475157 6_1:+28666020 None:intergenic
AACTAGTTCCTCCTGATTGG+TGG 0.478674 6_1:-28667582 Msa0881480:CDS
AGCTAACTTCCACTTGCATA+AGG 0.482491 6_1:-28668390 Msa0881480:intron
ACATCTTCAAACCACCAATC+AGG 0.482701 6_1:+28667571 None:intergenic
GAAGAAACACATGGAATGGT+TGG 0.485434 6_1:+28668803 None:intergenic
TTACAGAGGTTTCAAGAGAC+AGG 0.493241 6_1:-28666892 Msa0881480:CDS
ATGACAGAAGATTTAGAAGA+AGG 0.494776 6_1:-28667874 Msa0881480:CDS
TGGTTACTGAATTAGAGAAA+AGG 0.496556 6_1:-28667150 Msa0881480:CDS
TGATGATGTTCTTCCTGTGT+AGG 0.497579 6_1:+28667666 None:intergenic
TGTAACCATTGGTTGAGTAA+AGG 0.498751 6_1:+28665997 None:intergenic
TCAGCTAGAACCTGTGATGA+TGG 0.501666 6_1:-28666821 Msa0881480:CDS
TATGTGTAACTGTATTAGTA+AGG 0.501677 6_1:+28668999 None:intergenic
GGAACTAGTTGATTCCTACT+TGG 0.503593 6_1:+28667595 None:intergenic
CATACTTCAGCTTGGAGTAG+TGG 0.506325 6_1:-28665797 Msa0881480:CDS
TCTAATTCAGTAACCAATGC+AGG 0.508323 6_1:+28667157 None:intergenic
GGATGTGAATAAGATAGTTA+TGG 0.510860 6_1:-28668016 Msa0881480:CDS
GTTAAAGGTTGCACCTGCAT+TGG 0.512074 6_1:-28667170 Msa0881480:CDS
AACTAAATGGCTACAAGGGT+TGG 0.513326 6_1:-28667449 Msa0881480:CDS
AATAGTAATAGTAGTAGTAG+TGG 0.515974 6_1:-28667382 Msa0881480:CDS
AGCAGAAGCATACTTCAGCT+TGG 0.516992 6_1:-28665805 Msa0881480:CDS
AATAGTAGTAGTAGTGGTAG+CGG 0.517826 6_1:-28667376 Msa0881480:CDS
AGTTGGATTAAAGGCGGCGG+TGG 0.518651 6_1:-28667352 Msa0881480:CDS
GTCTCTCCTTTATTATAACA+AGG 0.523236 6_1:+28667082 None:intergenic
CTTCAGCTTGGAGTAGTGGT+TGG 0.523301 6_1:-28665793 Msa0881480:CDS
TTCGATGAAGCGAGCAATTG+TGG 0.530246 6_1:-28667406 Msa0881480:CDS
TGATATCCCTGGTGGATTTG+AGG 0.532058 6_1:-28667992 Msa0881480:CDS
TAACAAAGTGATCAATCCTA+AGG 0.539725 6_1:+28667542 None:intergenic
CTTGCAGCCAAATTCTGCTA+TGG 0.542630 6_1:-28667961 Msa0881480:CDS
CAACACTTTCTGAGCATGAA+AGG 0.546369 6_1:-28666186 Msa0881480:CDS
CCATTCTCAGAAGCCTAAGA+AGG 0.546533 6_1:+28667200 None:intergenic
TATGCAACTAAATGGCTACA+AGG 0.547334 6_1:-28667454 Msa0881480:CDS
GGACTTCACATGATTGTAGC+AGG 0.547821 6_1:-28667331 Msa0881480:CDS
ACTGAATTAGAGAAAAGGGT+TGG 0.548384 6_1:-28667145 Msa0881480:CDS
TCAGATTCCCACATGTTGGA+TGG 0.549036 6_1:+28668686 None:intergenic
TCTATAAAGTCCATCATCAC+AGG 0.549509 6_1:+28666811 None:intergenic
CAACACACTAAAGTTTGAGC+TGG 0.551730 6_1:-28665903 Msa0881480:CDS
CATCCTTCTTGGAATGATTG+TGG 0.555236 6_1:+28665947 None:intergenic
AGATAGCTACCTTATGCAAG+TGG 0.556587 6_1:+28668381 None:intergenic
ATTTGAAGATTCTCTGACCA+AGG 0.556867 6_1:+28667754 None:intergenic
ACTGAAGGATTTCTTCAAAG+AGG 0.557934 6_1:-28668596 Msa0881480:CDS
CCTTAATGCTAAAGCAAGAG+TGG 0.561105 6_1:-28666936 Msa0881480:CDS
CACAATCATTCCAAGAAGGA+TGG 0.563573 6_1:-28665946 Msa0881480:CDS
ATAGGAAGAAACACATGGAA+TGG 0.563622 6_1:+28668799 None:intergenic
GCTGCTGGAATATTACTTTG+AGG 0.565988 6_1:+28665704 None:intergenic
AAGCTTGTGCTAATCCAAAA+GGG 0.570071 6_1:-28667699 Msa0881480:CDS
ATTTGAACAAGAAAATCACT+TGG 0.572128 6_1:+28668419 None:intergenic
ACTCTCAGATTCCCACATGT+TGG 0.572140 6_1:+28668682 None:intergenic
TGAATCCTTTACTCAACCAA+TGG 0.578454 6_1:-28666002 Msa0881480:CDS
GTTACAGGCTGTGATGAAAT+GGG 0.583692 6_1:+28668896 None:intergenic
AAACATGGTGTCAAGACTGA+AGG 0.585042 6_1:-28668611 Msa0881480:CDS
GCAAGACACAAGTATGGTGA+TGG 0.587211 6_1:-28668650 Msa0881480:CDS
ATAGTTATGGATGATATCCC+TGG 0.588860 6_1:-28668003 Msa0881480:CDS
GATGCAGCGAGTCTATAGCT+TGG 0.589137 6_1:-28667723 Msa0881480:CDS
TCAAATGCCTCAAATCCACC+AGG 0.589531 6_1:+28667985 None:intergenic
TATCCTCTTATATCTCGAAG+TGG 0.591595 6_1:-28668075 Msa0881480:CDS
TGAAAATGAAAAGACATGTA+TGG 0.594971 6_1:-28669053 Msa0881480:five_prime_UTR
ATGCTAAAGCAAGAGTGGCA+AGG 0.595719 6_1:-28666931 Msa0881480:CDS
CATGAAACAGTATCTTTCTG+AGG 0.597213 6_1:+28667229 None:intergenic
TGCATGCTGCACAAAATGAA+AGG 0.608887 6_1:-28666111 Msa0881480:CDS
GGGATAAAATGGTCCTACAC+AGG 0.610206 6_1:-28667679 Msa0881480:CDS
TGAAAGATACAAGTCCAAGT+AGG 0.614508 6_1:-28667609 Msa0881480:CDS
TGTTGACAGTTATCTTACAG+AGG 0.625756 6_1:-28666906 Msa0881480:CDS
ATGAAAAGACATGTATGGTG+AGG 0.631369 6_1:-28669048 Msa0881480:five_prime_UTR
GAAACAGTATCTTTCTGAGG+AGG 0.634508 6_1:+28667232 None:intergenic
ATGCAACTAAATGGCTACAA+GGG 0.636403 6_1:-28667453 Msa0881480:CDS
ACACCACAATCATTCCAAGA+AGG 0.638741 6_1:-28665950 Msa0881480:CDS
TTGCTGTTGATTTAACAGCA+GGG 0.649818 6_1:-28667936 Msa0881480:CDS
GTCTTCAAGCTAAAGAACAA+AGG 0.650300 6_1:-28667285 Msa0881480:CDS
CTTCACATGATTGTAGCAGG+TGG 0.651151 6_1:-28667328 Msa0881480:CDS
GCTGTGAGAAGCTTTCACCT+TGG 0.658908 6_1:-28667771 Msa0881480:CDS
TCTTCAAACCACCAATCAGG+AGG 0.664130 6_1:+28667574 None:intergenic
ATTCTCACTTCAAACAAACA+TGG 0.669333 6_1:-28668626 Msa0881480:CDS
TGAGAATAGGAAGAAACACA+TGG 0.672730 6_1:+28668794 None:intergenic
GTTATGGATGATATCCCTGG+TGG 0.677226 6_1:-28668000 Msa0881480:CDS
ATGATGTTGATCTTGTTATG+CGG 0.690885 6_1:-28667051 Msa0881480:CDS
GTTTCTGGCAATCCATTACG+CGG 0.691677 6_1:+28666152 None:intergenic
GGTAGTTGGATTAAAGGCGG+CGG 0.693718 6_1:-28667355 Msa0881480:CDS
AGCGGTAGTTGGATTAAAGG+CGG 0.709972 6_1:-28667358 Msa0881480:CDS
CAAATGCCTCAAATCCACCA+GGG 0.743591 6_1:+28667986 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTATCTTAAAAAATTGT+CGG + chr6_1:28665650-28665669 None:intergenic 15.0%
!!! AGAATCTAGTATTTTTTTAA+TGG - chr6_1:28665976-28665995 Msa0881480:CDS 15.0%
!!! TTAATTCCTTGTTATAATAA+AGG - chr6_1:28667394-28667413 Msa0881480:CDS 15.0%
!!! ATGTTTTATCTTATTTTAAG+TGG - chr6_1:28667805-28667824 Msa0881480:CDS 15.0%
!! TTCAAAATAATTCTTGAAAT+TGG - chr6_1:28668043-28668062 Msa0881480:CDS 15.0%
!! AGTTATGAGTTTATTAGATT+TGG + chr6_1:28665530-28665549 None:intergenic 20.0%
!! AACAAAGAACAAAAAATTGT+TGG + chr6_1:28665616-28665635 None:intergenic 20.0%
!!! TCACTCAACTTATTTATTTT+TGG - chr6_1:28665708-28665727 Msa0881480:CDS 20.0%
!!! ATTCTTAAAAGCATTTTCAA+AGG + chr6_1:28665961-28665980 None:intergenic 20.0%
!! ACCTATGAGTTTATAATTTA+TGG - chr6_1:28666164-28666183 Msa0881480:CDS 20.0%
!! TCCATAAATTATAAACTCAT+AGG + chr6_1:28666168-28666187 None:intergenic 20.0%
!!! ACTTAAATATTCGTTTTTGT+AGG - chr6_1:28666227-28666246 Msa0881480:intron 20.0%
!!! AAGTTGAACAAAATTTTGTA+CGG - chr6_1:28666275-28666294 Msa0881480:intron 20.0%
!!! TTTTTATACTAAGAGAGATT+AGG - chr6_1:28666321-28666340 Msa0881480:intron 20.0%
!! ATATCATTATTATTCCATCT+TGG + chr6_1:28666854-28666873 None:intergenic 20.0%
!!! TTACTTATTTACCTTTTCAA+TGG - chr6_1:28667739-28667758 Msa0881480:CDS 20.0%
!!! TCAATTCAAAGACTATTTTA+GGG - chr6_1:28668150-28668169 Msa0881480:intron 20.0%
!!! TTGAGATTTTCTTATCTTAT+AGG + chr6_1:28668858-28668877 None:intergenic 20.0%
! TGAAAATGAAAAGACATGTA+TGG - chr6_1:28665429-28665448 Msa0881480:three_prime_UTR 25.0%
! TATGTGTAACTGTATTAGTA+AGG + chr6_1:28665486-28665505 None:intergenic 25.0%
! TGAGTTTATTAGATTTGGAT+TGG + chr6_1:28665525-28665544 None:intergenic 25.0%
! AAAGAACAAAAAATTGTTGG+AGG + chr6_1:28665613-28665632 None:intergenic 25.0%
!! TAAATAAGTTGAGTGAGAAT+AGG + chr6_1:28665704-28665723 None:intergenic 25.0%
!! ACAAAATGTACTGTTCTAAA+AGG + chr6_1:28665760-28665779 None:intergenic 25.0%
! ATCTAGTATTATTCTAATGC+AGG - chr6_1:28666022-28666041 Msa0881480:CDS 25.0%
! ATTTGAACAAGAAAATCACT+TGG + chr6_1:28666066-28666085 None:intergenic 25.0%
!! AGTGATTTTCTTGTTCAAAT+TGG - chr6_1:28666066-28666085 Msa0881480:CDS 25.0%
! AACACAAATAAATTCATCAG+TGG + chr6_1:28666363-28666382 None:intergenic 25.0%
! ATAACTATCTTATTCACATC+CGG + chr6_1:28666467-28666486 None:intergenic 25.0%
! ATTACTGCTATTAAGGTAAA+AGG - chr6_1:28666968-28666987 Msa0881480:CDS 25.0%
! TAATGCATTATGCAACTAAA+TGG - chr6_1:28667020-28667039 Msa0881480:CDS 25.0%
! AATAGTAATAGTAGTAGTAG+TGG - chr6_1:28667100-28667119 Msa0881480:CDS 25.0%
!!! TCATTTTCTGAGAAACATAT+GGG - chr6_1:28667511-28667530 Msa0881480:CDS 25.0%
! AATAAGTAAATCCTAGAAAC+AGG + chr6_1:28667728-28667747 None:intergenic 25.0%
! ATGACATAAAACCATTGAAA+AGG + chr6_1:28667753-28667772 None:intergenic 25.0%
! AGTGGATAAATATACATAGA+AGG - chr6_1:28667823-28667842 Msa0881480:CDS 25.0%
!! CTCAATTCAAAGACTATTTT+AGG - chr6_1:28668149-28668168 Msa0881480:intron 25.0%
!!! GTATATTGATGATGAATGTA+TGG - chr6_1:28668210-28668229 Msa0881480:intron 25.0%
! ATTCAACATCTTTCAAAGAA+GGG + chr6_1:28668465-28668484 None:intergenic 25.0%
ATTCTCACTTCAAACAAACA+TGG - chr6_1:28665856-28665875 Msa0881480:CDS 30.0%
!! GCCTTTACTTTGCTTTTATA+CGG - chr6_1:28666204-28666223 Msa0881480:intron 30.0%
TCCGTATAAAAGCAAAGTAA+AGG + chr6_1:28666208-28666227 None:intergenic 30.0%
GGATGTGAATAAGATAGTTA+TGG - chr6_1:28666466-28666485 Msa0881480:intron 30.0%
ATGACAGAAGATTTAGAAGA+AGG - chr6_1:28666608-28666627 Msa0881480:intron 30.0%
!!! GCTATGTTGTTTTATCATCA+TGG - chr6_1:28666663-28666682 Msa0881480:intron 30.0%
CTAATCCAAAAGGGATAAAA+TGG - chr6_1:28666792-28666811 Msa0881480:CDS 30.0%
! CAAAAATTTCAAGTCCAAGA+TGG - chr6_1:28666837-28666856 Msa0881480:CDS 30.0%
TTGAAGATGTTTCAATCCTT+AGG - chr6_1:28666924-28666943 Msa0881480:CDS 30.0%
TAACAAAGTGATCAATCCTA+AGG + chr6_1:28666943-28666962 None:intergenic 30.0%
TAGAGTCATTACTGCTATTA+AGG - chr6_1:28666961-28666980 Msa0881480:CDS 30.0%
! GGAATGAGATTTGAGTTAAT+TGG - chr6_1:28666989-28667008 Msa0881480:CDS 30.0%
GAGAATGGCAATTATGTTAA+AGG - chr6_1:28667297-28667316 Msa0881480:CDS 30.0%
TGGTTACTGAATTAGAGAAA+AGG - chr6_1:28667332-28667351 Msa0881480:CDS 30.0%
GGTTACTGAATTAGAGAAAA+GGG - chr6_1:28667333-28667352 Msa0881480:CDS 30.0%
GTCTCTCCTTTATTATAACA+AGG + chr6_1:28667403-28667422 None:intergenic 30.0%
! ATGATGTTGATCTTGTTATG+CGG - chr6_1:28667431-28667450 Msa0881480:CDS 30.0%
! TCAGAAAATGACTGTCTTTT+CGG + chr6_1:28667502-28667521 None:intergenic 30.0%
!! GTCATTTTCTGAGAAACATA+TGG - chr6_1:28667510-28667529 Msa0881480:CDS 30.0%
TCTTTCATTGACAAAGTTTC+AGG - chr6_1:28667615-28667634 Msa0881480:CDS 30.0%
!! AGCTATTGATTCCTATCTTA+AGG - chr6_1:28667693-28667712 Msa0881480:CDS 30.0%
GGAAGTAATTACCTTAAGAT+AGG + chr6_1:28667707-28667726 None:intergenic 30.0%
!! TTTGCAAAAGTACTGCAAAT+TGG + chr6_1:28667903-28667922 None:intergenic 30.0%
! TTTGCAGTACTTTTGCAAAT+TGG - chr6_1:28667904-28667923 Msa0881480:CDS 30.0%
GCACTTAATATCCATTAGTA+TGG - chr6_1:28667930-28667949 Msa0881480:CDS 30.0%
TCTACTCATTTCCATACTAA+TGG + chr6_1:28667944-28667963 None:intergenic 30.0%
CTACAATTTCAAAGGCAAAT+CGG + chr6_1:28667988-28668007 None:intergenic 30.0%
TCAGAACTCTACAATTTCAA+AGG + chr6_1:28667996-28668015 None:intergenic 30.0%
! ACGAAATTGACTGACTTAAA+AGG - chr6_1:28668107-28668126 Msa0881480:intron 30.0%
TGGTGATTCACTCAAATATT+AGG - chr6_1:28668180-28668199 Msa0881480:intron 30.0%
TTCACTAGTAAGAAATCCAA+TGG + chr6_1:28668257-28668276 None:intergenic 30.0%
TACTAGTGAAGTAAACTAAC+AGG - chr6_1:28668267-28668286 Msa0881480:intron 30.0%
AAAATGAAAGGCTTCCATTA+AGG - chr6_1:28668383-28668402 Msa0881480:intron 30.0%
AAATGAAAGGCTTCCATTAA+GGG - chr6_1:28668384-28668403 Msa0881480:intron 30.0%
GATTCAACATCTTTCAAAGA+AGG + chr6_1:28668466-28668485 None:intergenic 30.0%
! TTTGGAGCTTCAAAATGATA+TGG - chr6_1:28668621-28668640 Msa0881480:CDS 30.0%
ACAGAAAAACTACTAGAAGA+TGG - chr6_1:28668812-28668831 Msa0881480:five_prime_UTR 30.0%
CTTGAAAAAAGTGATTGACT+TGG + chr6_1:28668909-28668928 None:intergenic 30.0%
ATGAAAAGACATGTATGGTG+AGG - chr6_1:28665434-28665453 Msa0881480:three_prime_UTR 35.0%
!! AAAATTGTTGGAGGTGTTAC+AGG + chr6_1:28665604-28665623 None:intergenic 35.0%
ATAGGAAGAAACACATGGAA+TGG + chr6_1:28665686-28665705 None:intergenic 35.0%
TGAGAATAGGAAGAAACACA+TGG + chr6_1:28665691-28665710 None:intergenic 35.0%
!!! AGTTTTTTCCATCCAACATG+TGG - chr6_1:28665788-28665807 Msa0881480:CDS 35.0%
!!! GTTTTTTCCATCCAACATGT+GGG - chr6_1:28665789-28665808 Msa0881480:CDS 35.0%
ACTGAAGGATTTCTTCAAAG+AGG - chr6_1:28665886-28665905 Msa0881480:CDS 35.0%
GAGGATACTTTCACAACAAA+GGG + chr6_1:28666394-28666413 None:intergenic 35.0%
AGAGGATACTTTCACAACAA+AGG + chr6_1:28666395-28666414 None:intergenic 35.0%
TATCCTCTTATATCTCGAAG+TGG - chr6_1:28666407-28666426 Msa0881480:intron 35.0%
TTTCCACTTCGAGATATAAG+AGG + chr6_1:28666413-28666432 None:intergenic 35.0%
ATAGTTATGGATGATATCCC+TGG - chr6_1:28666479-28666498 Msa0881480:intron 35.0%
AGCAATTCCATAGCAGAATT+TGG + chr6_1:28666531-28666550 None:intergenic 35.0%
!! ATTGCTGTTGATTTAACAGC+AGG - chr6_1:28666545-28666564 Msa0881480:intron 35.0%
!! TTGCTGTTGATTTAACAGCA+GGG - chr6_1:28666546-28666565 Msa0881480:intron 35.0%
ATTTGAAGATTCTCTGACCA+AGG + chr6_1:28666731-28666750 None:intergenic 35.0%
AAAGCTTGTGCTAATCCAAA+AGG - chr6_1:28666782-28666801 Msa0881480:intron 35.0%
AAGCTTGTGCTAATCCAAAA+GGG - chr6_1:28666783-28666802 Msa0881480:intron 35.0%
! TAGGACCATTTTATCCCTTT+TGG + chr6_1:28666800-28666819 None:intergenic 35.0%
TGAAAGATACAAGTCCAAGT+AGG - chr6_1:28666873-28666892 Msa0881480:CDS 35.0%
TATGCAACTAAATGGCTACA+AGG - chr6_1:28667028-28667047 Msa0881480:CDS 35.0%
ATGCAACTAAATGGCTACAA+GGG - chr6_1:28667029-28667048 Msa0881480:CDS 35.0%
AATAGTAGTAGTAGTGGTAG+CGG - chr6_1:28667106-28667125 Msa0881480:CDS 35.0%
GTCTTCAAGCTAAAGAACAA+AGG - chr6_1:28667197-28667216 Msa0881480:CDS 35.0%
CATGAAACAGTATCTTTCTG+AGG + chr6_1:28667256-28667275 None:intergenic 35.0%
TTTCATGCACTTTCCTTCTT+AGG - chr6_1:28667269-28667288 Msa0881480:CDS 35.0%
TCTAATTCAGTAACCAATGC+AGG + chr6_1:28667328-28667347 None:intergenic 35.0%
ACTGAATTAGAGAAAAGGGT+TGG - chr6_1:28667337-28667356 Msa0881480:CDS 35.0%
! TTCTGAGAAACATATGGGAT+TGG - chr6_1:28667516-28667535 Msa0881480:CDS 35.0%
TCTGAGAAACATATGGGATT+GGG - chr6_1:28667517-28667536 Msa0881480:CDS 35.0%
TGTTGACAGTTATCTTACAG+AGG - chr6_1:28667576-28667595 Msa0881480:CDS 35.0%
TCTATAAAGTCCATCATCAC+AGG + chr6_1:28667674-28667693 None:intergenic 35.0%
! GGTAATTACTTCCTGTTTCT+AGG - chr6_1:28667714-28667733 Msa0881480:CDS 35.0%
! GTCATCTAGAGTTACACATT+TGG - chr6_1:28667768-28667787 Msa0881480:CDS 35.0%
CTAGAGTTACACATTTGGTT+TGG - chr6_1:28667773-28667792 Msa0881480:CDS 35.0%
CTGACTTAAAAGGAATAACG+TGG - chr6_1:28668117-28668136 Msa0881480:intron 35.0%
!! GACTATTTTAGGGACAACTT+TGG - chr6_1:28668160-28668179 Msa0881480:intron 35.0%
CAGCTTAACTGTTATTCCAT+TGG - chr6_1:28668238-28668257 Msa0881480:intron 35.0%
ATGCATCAATTGAGAGTTTC+TGG + chr6_1:28668348-28668367 None:intergenic 35.0%
TCTTTACCTGTTCTGCAAAT+AGG + chr6_1:28668423-28668442 None:intergenic 35.0%
AACATCTTTCAAAGAAGGGT+TGG + chr6_1:28668461-28668480 None:intergenic 35.0%
TGAATCCTTTACTCAACCAA+TGG - chr6_1:28668480-28668499 Msa0881480:intron 35.0%
! TGTAACCATTGGTTGAGTAA+AGG + chr6_1:28668488-28668507 None:intergenic 35.0%
!! GTTTTTCGGTTTGTAACCAT+TGG + chr6_1:28668499-28668518 None:intergenic 35.0%
GAGTGTGAAAGCTAAGTATT+TGG - chr6_1:28668603-28668622 Msa0881480:CDS 35.0%
! GTAGTTTTTCTGTTCTGTTC+TGG + chr6_1:28668805-28668824 None:intergenic 35.0%
AGGCATAAAGACACTGAAAC+TGG - chr6_1:28665454-28665473 Msa0881480:three_prime_UTR 40.0%
GTTACAGGCTGTGATGAAAT+GGG + chr6_1:28665589-28665608 None:intergenic 40.0%
TGTTACAGGCTGTGATGAAA+TGG + chr6_1:28665590-28665609 None:intergenic 40.0%
GAAGAAACACATGGAATGGT+TGG + chr6_1:28665682-28665701 None:intergenic 40.0%
TCAACTGCAAGACACAAGTA+TGG - chr6_1:28665826-28665845 Msa0881480:CDS 40.0%
! AAACATGGTGTCAAGACTGA+AGG - chr6_1:28665871-28665890 Msa0881480:CDS 40.0%
TTCTTCAAAGAGGTCACTCT+TGG - chr6_1:28665896-28665915 Msa0881480:CDS 40.0%
AGCTAACTTCCACTTGCATA+AGG - chr6_1:28666092-28666111 Msa0881480:CDS 40.0%
AGATAGCTACCTTATGCAAG+TGG + chr6_1:28666104-28666123 None:intergenic 40.0%
CATATATGAATCACGCGAAC+CGG - chr6_1:28666445-28666464 Msa0881480:intron 40.0%
TTAACAGCAGGGAACATTTC+TGG - chr6_1:28666557-28666576 Msa0881480:intron 40.0%
! TGATGATGTTCTTCCTGTGT+AGG + chr6_1:28666819-28666838 None:intergenic 40.0%
! GGAACTAGTTGATTCCTACT+TGG + chr6_1:28666890-28666909 None:intergenic 40.0%
ATCAACTAGTTCCTCCTGAT+TGG - chr6_1:28666897-28666916 Msa0881480:CDS 40.0%
ACATCTTCAAACCACCAATC+AGG + chr6_1:28666914-28666933 None:intergenic 40.0%
AACTAAATGGCTACAAGGGT+TGG - chr6_1:28667033-28667052 Msa0881480:CDS 40.0%
! GAAACAGTATCTTTCTGAGG+AGG + chr6_1:28667253-28667272 None:intergenic 40.0%
CCACTCTTGCTTTAGCATTA+AGG + chr6_1:28667549-28667568 None:intergenic 40.0%
CCTTAATGCTAAAGCAAGAG+TGG - chr6_1:28667546-28667565 Msa0881480:CDS 40.0%
TTACAGAGGTTTCAAGAGAC+AGG - chr6_1:28667590-28667609 Msa0881480:CDS 40.0%
!! CACACTCGCATAATTTGCTA+CGG - chr6_1:28667852-28667871 Msa0881480:CDS 40.0%
TTCGCAAACCAATTCACGTT+TGG + chr6_1:28667878-28667897 None:intergenic 40.0%
TAAAAGGAATAACGTGGTCG+AGG - chr6_1:28668123-28668142 Msa0881480:intron 40.0%
! CTTTCATGCTCAGAAAGTGT+TGG + chr6_1:28668298-28668317 None:intergenic 40.0%
CAACACTTTCTGAGCATGAA+AGG - chr6_1:28668296-28668315 Msa0881480:intron 40.0%
TGCATGCTGCACAAAATGAA+AGG - chr6_1:28668371-28668390 Msa0881480:intron 40.0%
ACTTGCACAACTACCCTTAA+TGG + chr6_1:28668400-28668419 None:intergenic 40.0%
AAACCGAAAAACACTTCTCG+AGG - chr6_1:28668507-28668526 Msa0881480:intron 40.0%
ACACCACAATCATTCCAAGA+AGG - chr6_1:28668532-28668551 Msa0881480:intron 40.0%
CATCCTTCTTGGAATGATTG+TGG + chr6_1:28668538-28668557 None:intergenic 40.0%
CACAATCATTCCAAGAAGGA+TGG - chr6_1:28668536-28668555 Msa0881480:intron 40.0%
CAACACACTAAAGTTTGAGC+TGG - chr6_1:28668579-28668598 Msa0881480:intron 40.0%
GCTGCTGGAATATTACTTTG+AGG + chr6_1:28668781-28668800 None:intergenic 40.0%
TCAGATTCCCACATGTTGGA+TGG + chr6_1:28665799-28665818 None:intergenic 45.0%
ACTCTCAGATTCCCACATGT+TGG + chr6_1:28665803-28665822 None:intergenic 45.0%
GCAAGACACAAGTATGGTGA+TGG - chr6_1:28665832-28665851 Msa0881480:CDS 45.0%
GTTATGGATGATATCCCTGG+TGG - chr6_1:28666482-28666501 Msa0881480:intron 45.0%
!! TGATATCCCTGGTGGATTTG+AGG - chr6_1:28666490-28666509 Msa0881480:intron 45.0%
CAAATGCCTCAAATCCACCA+GGG + chr6_1:28666499-28666518 None:intergenic 45.0%
TCAAATGCCTCAAATCCACC+AGG + chr6_1:28666500-28666519 None:intergenic 45.0%
CTTGCAGCCAAATTCTGCTA+TGG - chr6_1:28666521-28666540 Msa0881480:intron 45.0%
GGGATAAAATGGTCCTACAC+AGG - chr6_1:28666803-28666822 Msa0881480:CDS 45.0%
AACTAGTTCCTCCTGATTGG+TGG - chr6_1:28666900-28666919 Msa0881480:CDS 45.0%
TCTTCAAACCACCAATCAGG+AGG + chr6_1:28666911-28666930 None:intergenic 45.0%
TTCGATGAAGCGAGCAATTG+TGG - chr6_1:28667076-28667095 Msa0881480:CDS 45.0%
! GGTAGCGGTAGTTGGATTAA+AGG - chr6_1:28667121-28667140 Msa0881480:CDS 45.0%
AGCGGTAGTTGGATTAAAGG+CGG - chr6_1:28667124-28667143 Msa0881480:CDS 45.0%
GGACTTCACATGATTGTAGC+AGG - chr6_1:28667151-28667170 Msa0881480:CDS 45.0%
CTTCACATGATTGTAGCAGG+TGG - chr6_1:28667154-28667173 Msa0881480:CDS 45.0%
CCATTCTCAGAAGCCTAAGA+AGG + chr6_1:28667285-28667304 None:intergenic 45.0%
! CCTTCTTAGGCTTCTGAGAA+TGG - chr6_1:28667282-28667301 Msa0881480:CDS 45.0%
GTTAAAGGTTGCACCTGCAT+TGG - chr6_1:28667312-28667331 Msa0881480:CDS 45.0%
ATGCTAAAGCAAGAGTGGCA+AGG - chr6_1:28667551-28667570 Msa0881480:CDS 45.0%
! TCACAGGTTCTAGCTGATTC+AGG + chr6_1:28667658-28667677 None:intergenic 45.0%
TCAGCTAGAACCTGTGATGA+TGG - chr6_1:28667661-28667680 Msa0881480:CDS 45.0%
!! GTTTCTGGCAATCCATTACG+CGG + chr6_1:28668333-28668352 None:intergenic 45.0%
GCAAGTCCTATTTGCAGAAC+AGG - chr6_1:28668414-28668433 Msa0881480:CDS 45.0%
!!! TCGCCTCGAGAAGTGTTTTT+CGG + chr6_1:28668513-28668532 None:intergenic 45.0%
TAGCAGTTGTCCATCCTTCT+TGG + chr6_1:28668549-28668568 None:intergenic 45.0%
! AGCAGAAGCATACTTCAGCT+TGG - chr6_1:28668677-28668696 Msa0881480:CDS 45.0%
CATACTTCAGCTTGGAGTAG+TGG - chr6_1:28668685-28668704 Msa0881480:exon 45.0%
GCTGTGAGAAGCTTTCACCT+TGG - chr6_1:28666711-28666730 Msa0881480:intron 50.0%
GATGCAGCGAGTCTATAGCT+TGG - chr6_1:28666759-28666778 Msa0881480:intron 50.0%
!! GTAGTAGTGGTAGCGGTAGT+TGG - chr6_1:28667113-28667132 Msa0881480:CDS 50.0%
GGTAGTTGGATTAAAGGCGG+CGG - chr6_1:28667127-28667146 Msa0881480:CDS 50.0%
TGCTACGGCCAAACGTGAAT+TGG - chr6_1:28667867-28667886 Msa0881480:CDS 50.0%
CTTCAGCTTGGAGTAGTGGT+TGG - chr6_1:28668689-28668708 Msa0881480:exon 50.0%
AGTTGGATTAAAGGCGGCGG+TGG - chr6_1:28667130-28667149 Msa0881480:CDS 55.0%
!! CTGTTCTGTTCTGGAGCTGC+TGG + chr6_1:28668796-28668815 None:intergenic 55.0%
GAAGCGACTCTGCCGCGTAA+TGG - chr6_1:28668318-28668337 Msa0881480:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 28665417 28669087 28665417 ID=Msa0881480;Name=Msa0881480
chr6_1 mRNA 28665417 28669087 28665417 ID=Msa0881480-mRNA-1;Parent=Msa0881480;Name=Msa0881480-mRNA-1;_AED=0.14;_eAED=0.14;_QI=364|1|1|1|0.75|0.6|5|235|684
chr6_1 exon 28665417 28666215 28665417 ID=Msa0881480-mRNA-1:exon:7303;Parent=Msa0881480-mRNA-1
chr6_1 exon 28666790 28668097 28666790 ID=Msa0881480-mRNA-1:exon:7302;Parent=Msa0881480-mRNA-1
chr6_1 exon 28668391 28668460 28668391 ID=Msa0881480-mRNA-1:exon:7301;Parent=Msa0881480-mRNA-1
chr6_1 exon 28668587 28668939 28668587 ID=Msa0881480-mRNA-1:exon:7300;Parent=Msa0881480-mRNA-1
chr6_1 exon 28668964 28669087 28668964 ID=Msa0881480-mRNA-1:exon:7299;Parent=Msa0881480-mRNA-1
chr6_1 five_prime_UTR 28668964 28669087 28668964 ID=Msa0881480-mRNA-1:five_prime_utr;Parent=Msa0881480-mRNA-1
chr6_1 five_prime_UTR 28668700 28668939 28668700 ID=Msa0881480-mRNA-1:five_prime_utr;Parent=Msa0881480-mRNA-1
chr6_1 CDS 28668587 28668699 28668587 ID=Msa0881480-mRNA-1:cds;Parent=Msa0881480-mRNA-1
chr6_1 CDS 28668391 28668460 28668391 ID=Msa0881480-mRNA-1:cds;Parent=Msa0881480-mRNA-1
chr6_1 CDS 28666790 28668097 28666790 ID=Msa0881480-mRNA-1:cds;Parent=Msa0881480-mRNA-1
chr6_1 CDS 28665652 28666215 28665652 ID=Msa0881480-mRNA-1:cds;Parent=Msa0881480-mRNA-1
chr6_1 three_prime_UTR 28665417 28665651 28665417 ID=Msa0881480-mRNA-1:three_prime_utr;Parent=Msa0881480-mRNA-1
Gene Sequence

>Msa0881480

ATGTGGGAATCTGAGAGTGATTCAACTGCAAGACACAAGTATGGTGATGGAATTCTCACTTCAAACAAACATGGTGTCAAGACTGAAGGATTTCTTCAAAGAGGTCACTCTTGGTATGTTGCAACTGACGTTCCAAGTGATTTTCTTGTTCAAATTGGAGAAGCTAACTTCCACTTGCATAAGTATCCTCTTATATCTCGAAGTGGAAAGCTGAGTAGAATCATATATGAATCACGCGAACCGGATGTGAATAAGATAGTTATGGATGATATCCCTGGTGGATTTGAGGCATTTGAACTTGCAGCCAAATTCTGCTATGGAATTGCTGTTGATTTAACAGCAGGGAACATTTCTGGACTAAGATGTGCTGCTGAGTATCTAGAAATGACAGAAGATTTAGAAGAAGGCAATCTTATATTCAAAACAGAAGCATTTCTTAGCTATGTTGTTTTATCATCATGGAGAGACTCTATAGTAGTTTTGAAAAGCTGTGAGAAGCTTTCACCTTGGTCAGAGAATCTTCAAATCGTTCGAAGATGCAGCGAGTCTATAGCTTGGAAAGCTTGTGCTAATCCAAAAGGGATAAAATGGTCCTACACAGGAAGAACATCATCAAAAATTTCAAGTCCAAGATGGAATAATAATGATATGAAAGATACAAGTCCAAGTAGGAATCAACTAGTTCCTCCTGATTGGTGGTTTGAAGATGTTTCAATCCTTAGGATTGATCACTTTGTTAGAGTCATTACTGCTATTAAGGTAAAAGGAATGAGATTTGAGTTAATTGGTGCTGCAATAATGCATTATGCAACTAAATGGCTACAAGGGTTGGTTAGTGAAACATCAATCACATTCGATGAAGCGAGCAATTGTGGTAATAGTAATAGTAGTAGTAGTGGTAGCGGTAGTTGGATTAAAGGCGGCGGTGGACTTCACATGATTGTAGCAGGTGGAACTAGAGATGAAACTTCAAGTCTTCAAGCTAAAGAACAAAGGATGATAATTGAGAGTCTTATAAGCATTATTCCTCCTCAGAAAGATACTGTTTCATGCACTTTCCTTCTTAGGCTTCTGAGAATGGCAATTATGTTAAAGGTTGCACCTGCATTGGTTACTGAATTAGAGAAAAGGGTTGGAATGCAATTCGAGCAAGCTACACTTGCTGATCTGTTAATTCCTTGTTATAATAAAGGAGAGACAATGATGTATGATGTTGATCTTGTTATGCGGTTGCTTGAGCATTTTCTTGTACAAGAAGTGACTGAAAATTCTAGTCCGAAAAGACAGTCATTTTCTGAGAAACATATGGGATTGGGATGTAACCTTAATGCTAAAGCAAGAGTGGCAAGGCTTGTTGACAGTTATCTTACAGAGGTTTCAAGAGACAGGAATCTTTCATTGACAAAGTTTCAGGTACTTGCTGAAGCTTTGCCTGAATCAGCTAGAACCTGTGATGATGGACTTTATAGAGCTATTGATTCCTATCTTAAGGCACATCCAACACTTTCTGAGCATGAAAGGAAGCGACTCTGCCGCGTAATGGATTGCCAGAAACTCTCAATTGATGCATGCATGCATGCTGCACAAAATGAAAGGCTTCCATTAAGGGTAGTTGTGCAAGTCCTATTTGCAGAACAGGTAAAGATAAGTACTGCATTATCCAACCCTTCTTTGAAAGATGTTGAATCCTTTACTCAACCAATGGTTACAAACCGAAAAACACTTCTCGAGGCGACACCACAATCATTCCAAGAAGGATGGACAACTGCTAAAAAAGATGTCAACACACTAAAGTTTGAGCTGGAGAGTGTGAAAGCTAAGTATTTGGAGCTTCAAAATGATATGGAAAATTTGCAGAAACAATTTGATAAGATGTTAAAGCAGAAGCATACTTCAGCTTGGAGTAGTGGTTGGAAGAAATTAAGCAAACTTACAAAGATGACAAATGTACAAAATCATGATCATGATCATGATAATTCACCTCAAAGTAATATTCCAGCAGCTCCAGAACAGAACAGAAAAACTACTAGAAGATGGAGAAATTCAATATCTTGA

Protein sequence

>Msa0881480

MWESESDSTARHKYGDGILTSNKHGVKTEGFLQRGHSWYVATDVPSDFLVQIGEANFHLHKYPLISRSGKLSRIIYESREPDVNKIVMDDIPGGFEAFELAAKFCYGIAVDLTAGNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIVVLKSCEKLSPWSENLQIVRRCSESIAWKACANPKGIKWSYTGRTSSKISSPRWNNNDMKDTSPSRNQLVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGAAIMHYATKWLQGLVSETSITFDEASNCGNSNSSSSGSGSWIKGGGGLHMIVAGGTRDETSSLQAKEQRMIIESLISIIPPQKDTVSCTFLLRLLRMAIMLKVAPALVTELEKRVGMQFEQATLADLLIPCYNKGETMMYDVDLVMRLLEHFLVQEVTENSSPKRQSFSEKHMGLGCNLNAKARVARLVDSYLTEVSRDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKAHPTLSEHERKRLCRVMDCQKLSIDACMHAAQNERLPLRVVVQVLFAEQVKISTALSNPSLKDVESFTQPMVTNRKTLLEATPQSFQEGWTTAKKDVNTLKFELESVKAKYLELQNDMENLQKQFDKMLKQKHTSAWSSGWKKLSKLTKMTNVQNHDHDHDNSPQSNIPAAPEQNRKTTRRWRNSIS*