AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0032080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032080 MtrunA17_Chr1g0190341 98.393 560 9 0 1 560 1 560 0.0 1145
Msa0032080 MtrunA17_Chr1g0190371 98.393 560 9 0 1 560 1 560 0.0 1145
Msa0032080 MtrunA17_Chr5g0395701 55.729 576 226 7 5 558 37 605 0.0 665
Msa0032080 MtrunA17_Chr4g0039581 55.009 569 241 8 1 558 3 567 0.0 649
Msa0032080 MtrunA17_Chr2g0309191 47.257 565 266 12 6 558 8 552 3.22e-175 506
Msa0032080 MtrunA17_Chr2g0309181 46.196 552 270 10 18 558 50 585 9.23e-170 494
Msa0032080 MtrunA17_Chr2g0310081 45.833 552 262 11 20 558 51 578 1.68e-169 493
Msa0032080 MtrunA17_Chr4g0074491 44.646 551 274 10 23 558 12 546 1.47e-161 471
Msa0032080 MtrunA17_Chr2g0309171 45.624 537 263 9 35 558 631 1151 6.23e-154 470
Msa0032080 MtrunA17_Chr2g0309171 45.591 533 260 9 35 554 14 529 1.15e-146 451
Msa0032080 MtrunA17_Chr2g0309131 42.620 542 229 8 23 558 20 485 5.86e-141 416
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032080 AT3G04350.1 64.336 572 187 7 1 560 1 567 0.0 756
Msa0032080 AT5G18490.1 64.641 543 175 7 22 560 24 553 0.0 733
Msa0032080 AT3G04350.2 65.234 535 172 6 35 560 16 545 0.0 724
Msa0032080 AT1G04090.1 53.899 577 244 9 1 560 1 572 0.0 651
Msa0032080 AT5G43950.1 53.403 573 243 9 1 558 1 564 0.0 627
Msa0032080 AT2G44260.1 45.772 544 267 9 23 558 29 552 6.02e-169 491
Msa0032080 AT2G44230.1 45.338 547 263 10 23 558 20 541 1.61e-167 487
Msa0032080 AT2G44260.2 45.677 532 261 9 35 558 71 582 1.39e-163 478
Msa0032080 AT3G01870.1 41.416 565 291 13 11 558 42 583 4.13e-140 418
Msa0032080 AT3G01880.1 40.925 562 292 13 15 558 50 589 5.92e-138 413

Find 189 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCATCAATGACACTTTA+AGG 0.107306 1_1:-59004194 None:intergenic
ACTGCGTGAATGCGTAAATT+TGG 0.163385 1_1:-59004905 None:intergenic
ACACTGAAAACAAAAGAATT+TGG 0.203333 1_1:-59005105 None:intergenic
GTAGTTACTTATAGCTTTCT+TGG 0.219890 1_1:+59005213 Msa0032080:three_prime_UTR
TAAACAAGTTTGAGAAAGTT+TGG 0.235719 1_1:+59003245 Msa0032080:CDS
CTGAGCACAGTGGAGGTAAA+TGG 0.247800 1_1:+59004313 Msa0032080:CDS
TTATTTCCAACAGAGCTTTC+TGG 0.254169 1_1:+59004687 Msa0032080:CDS
CACTTAATTACTCGTTAATA+TGG 0.260129 1_1:+59003467 Msa0032080:CDS
ATTCGATTTGGAGTTTATTA+AGG 0.263278 1_1:+59004344 Msa0032080:CDS
ACAAAAGAATTTGGATTGTC+TGG 0.303145 1_1:-59005096 None:intergenic
AGCCAATTGTCCTTCTCCTT+TGG 0.307063 1_1:-59004729 None:intergenic
GCGAACTCCTATTCCAAGTT+TGG 0.314359 1_1:-59004445 None:intergenic
TCCTTTACCATAAGAATGAT+TGG 0.315404 1_1:-59004821 None:intergenic
TGTCTTGATGAATAAACTAT+TGG 0.322222 1_1:-59004375 None:intergenic
TCTGGTGAGGTGGGGCCAAC+TGG 0.326914 1_1:+59004705 Msa0032080:CDS
ACAGAAAACCTAACAAATAT+TGG 0.329471 1_1:-59004648 None:intergenic
GATATAATGATGGTGCGTTT+TGG 0.329648 1_1:+59004019 Msa0032080:CDS
CATCGAACTTCTTCAACTTT+CGG 0.340671 1_1:-59003589 None:intergenic
TCTTCAACTTTCGGTTCATC+TGG 0.342527 1_1:-59003580 None:intergenic
TCCGAAAACATACCATTATT+AGG 0.342536 1_1:-59004864 None:intergenic
ATGGGTTAATGCATTCGATT+TGG 0.345620 1_1:+59004332 Msa0032080:CDS
ATGATGAATGTGTTTACTTT+TGG 0.348745 1_1:+59003503 Msa0032080:CDS
TCCTTCTCCTTTGGACCAGT+TGG 0.349557 1_1:-59004720 None:intergenic
GACGGACCAGATATCAAGTT+TGG 0.351841 1_1:-59005011 None:intergenic
ACATGCTTCCAATATTTGTT+AGG 0.353415 1_1:+59004640 Msa0032080:CDS
TCAACATTAATTACTTGTTT+CGG 0.357438 1_1:-59002427 None:intergenic
AATGACACTTTAAGGGTTGC+AGG 0.360391 1_1:-59004186 None:intergenic
CATGCTCTCATTGAGCATTA+CGG 0.360621 1_1:+59003853 Msa0032080:CDS
GGAACAATCAGCTTGAGATT+TGG 0.364813 1_1:-59003416 None:intergenic
TCATCTTTCTGTCCTAATAA+TGG 0.365027 1_1:+59004852 Msa0032080:three_prime_UTR
GCTGGATCCAATCATTCTTA+TGG 0.369974 1_1:+59004814 Msa0032080:three_prime_UTR
GTTCATCAATGACACTTTAA+GGG 0.377575 1_1:-59004193 None:intergenic
GGATCAGAGTCAAAGAATTC+TGG 0.378539 1_1:-59002635 None:intergenic
GTATCAACTGTATGTATAGA+AGG 0.379258 1_1:+59005166 Msa0032080:three_prime_UTR
ATGCTCTCATTGAGCATTAC+GGG 0.380356 1_1:+59003854 Msa0032080:CDS
AAAATTCCAAACTTGATATC+TGG 0.383640 1_1:+59005005 Msa0032080:three_prime_UTR
AACTTTCGGTTCATCTGGAT+TGG 0.384698 1_1:-59003575 None:intergenic
TGGAGATGCACAAATTCTAA+TGG 0.385168 1_1:+59003265 Msa0032080:CDS
CTGTTGGAAATAATTCAAAA+AGG 0.390774 1_1:-59004677 None:intergenic
CTGCGTGAATGCGTAAATTT+GGG 0.393049 1_1:-59004904 None:intergenic
TTCATTCGTATTGCTTGTAA+TGG 0.394395 1_1:+59005387 Msa0032080:three_prime_UTR
AGAGGTGAAGGAAGAGAAAA+GGG 0.395917 1_1:-59002662 None:intergenic
AGAGTAGAGGGAGGAGGAGG+AGG 0.395971 1_1:+59002490 Msa0032080:five_prime_UTR
AAGAGGTGAAGGAAGAGAAA+AGG 0.400057 1_1:-59002663 None:intergenic
TAAGATAATATTATTGCTAA+AGG 0.408489 1_1:+59005343 Msa0032080:three_prime_UTR
TCATGCAGGGACTTACCTTC+AGG 0.415789 1_1:+59004416 Msa0032080:CDS
TGTGGTTGGTAAGAGATGTT+TGG 0.416589 1_1:+59002584 Msa0032080:exon
AAGAGAGTAGAGGGAGGAGG+AGG 0.423853 1_1:+59002487 Msa0032080:five_prime_UTR
AGGGTTGCAGGTCCATTGAA+TGG 0.426014 1_1:-59004174 None:intergenic
TCCTCGCAACGGCTGATCAT+TGG 0.426252 1_1:-59003365 None:intergenic
GTTCATGTAAAACCAGCATT+AGG 0.426763 1_1:+59004114 Msa0032080:CDS
CCGACGGCTTTATAACCCTT+TGG 0.428360 1_1:-59003538 None:intergenic
TCGGTGAACATGTCGGTGAT+TGG 0.430687 1_1:+59004232 Msa0032080:CDS
CGGTGAACATGTCGGTGATT+GGG 0.432477 1_1:+59004233 Msa0032080:CDS
CTTCAGGGATCATCCAAACT+TGG 0.432488 1_1:+59004432 Msa0032080:CDS
TCCAATCATTCTTATGGTAA+AGG 0.432784 1_1:+59004820 Msa0032080:three_prime_UTR
GCTCAATGAGAGCATGAATC+TGG 0.436544 1_1:-59003846 None:intergenic
CATATTAACGAGTAATTAAG+TGG 0.438102 1_1:-59003466 None:intergenic
GATACATGGCGACGATATCT+TGG 0.440980 1_1:-59005148 None:intergenic
GCAACTTCACCGGAGAGCTT+TGG 0.443367 1_1:+59004277 Msa0032080:CDS
ATATTATTGCTAAAGGTTGA+TGG 0.447274 1_1:+59005350 Msa0032080:three_prime_UTR
TTATAACCCTTTGGAGGGTT+AGG 0.448233 1_1:-59003529 None:intergenic
GGATCATCCAAACTTGGAAT+AGG 0.450282 1_1:+59004438 Msa0032080:CDS
GATGGCATGTATTTCTCATC+AGG 0.457793 1_1:-59003895 None:intergenic
TGTATGTATAGAAGGGGTAT+AGG 0.458755 1_1:+59005174 Msa0032080:three_prime_UTR
CCCAAGGGATATTCTTCCAC+CGG 0.460403 1_1:-59003203 None:intergenic
TATTATTGCTAAAGGTTGAT+GGG 0.466225 1_1:+59005351 Msa0032080:three_prime_UTR
ACCTCACCAGAAAGCTCTGT+TGG 0.468582 1_1:-59004693 None:intergenic
AACAGAGCTTTCTGGTGAGG+TGG 0.468602 1_1:+59004695 Msa0032080:CDS
AATACACAACCTTGCGATAG+AGG 0.468770 1_1:+59003697 Msa0032080:CDS
CCAAGACAGGAAAATCCATC+TGG 0.469039 1_1:-59003328 None:intergenic
GCATGAATCTGGTTCAGATT+CGG 0.470765 1_1:-59003835 None:intergenic
GAGGACACGTTCTTGTCGCT+CGG 0.471944 1_1:+59003383 Msa0032080:CDS
TGGATCCAGCTCATGAGAAA+TGG 0.475127 1_1:-59004801 None:intergenic
TGAGCACAGTGGAGGTAAAT+GGG 0.475593 1_1:+59004314 Msa0032080:CDS
CTTTACTGATATTGCAATGT+GGG 0.475927 1_1:+59004143 Msa0032080:CDS
GAAGGAAGAGAAAAGGGAAG+TGG 0.478043 1_1:-59002656 None:intergenic
TGCGAGAAATAATCTTAAGA+AGG 0.480833 1_1:+59004065 Msa0032080:CDS
GCAGGCACGTCAGTGGTCAT+TGG 0.482146 1_1:+59004930 Msa0032080:three_prime_UTR
ACGGCTTTATAACCCTTTGG+AGG 0.486012 1_1:-59003535 None:intergenic
ACAGAGCTTTCTGGTGAGGT+GGG 0.486231 1_1:+59004696 Msa0032080:CDS
TTTCGGTTCATCTGGATTGG+TGG 0.487936 1_1:-59003572 None:intergenic
ATTGTTGCTGCCGAGTATCT+TGG 0.490221 1_1:+59004519 Msa0032080:CDS
GTCCAAAGGAGAAGGACAAT+TGG 0.490950 1_1:+59004727 Msa0032080:CDS
CGTATTGCTTGTAATGGAAG+AGG 0.491449 1_1:+59005393 Msa0032080:three_prime_UTR
AAACAGAATAAGAGAGTAGA+GGG 0.491921 1_1:+59002478 Msa0032080:five_prime_UTR
CTCACAAACTTCTGTTAGAT+CGG 0.493970 1_1:-59003620 None:intergenic
ACTAGCCATTTCTCATGAGC+TGG 0.497310 1_1:+59004796 Msa0032080:three_prime_UTR
AGGACATGTATATACATTTG+TGG 0.499083 1_1:+59005312 Msa0032080:three_prime_UTR
GGGTTGCAGGTCCATTGAAT+GGG 0.500640 1_1:-59004173 None:intergenic
GCCGGTGGAAGAATATCCCT+TGG 0.503378 1_1:+59003202 Msa0032080:CDS
AATAAGAGAGTAGAGGGAGG+AGG 0.505306 1_1:+59002484 Msa0032080:five_prime_UTR
CTACTTTGATTCTGAACAAG+TGG 0.505519 1_1:+59003765 Msa0032080:CDS
GAGAAATGGCTAGTAGCATA+TGG 0.508226 1_1:-59004787 None:intergenic
CGGTGAAGTTGCTCACGCGA+AGG 0.508371 1_1:-59004266 None:intergenic
TTGTTCCGAGTCAGAATCCT+TGG 0.510563 1_1:+59003432 Msa0032080:CDS
CATGCTAGCTATCCTCATGC+AGG 0.510869 1_1:+59004402 Msa0032080:CDS
TACGCATTCACGCAGTCGGC+AGG 0.512700 1_1:+59004912 Msa0032080:three_prime_UTR
CCTTGTGGCCATTGTGGAAG+AGG 0.512962 1_1:-59002680 None:intergenic
CCACATTGCAATATCAGTAA+AGG 0.513990 1_1:-59004142 None:intergenic
GGTGGCCGTTGGATCTAGAT+TGG 0.518329 1_1:-59005033 None:intergenic
TATCAACTGTATGTATAGAA+GGG 0.523623 1_1:+59005167 Msa0032080:three_prime_UTR
TTGGTTGCCTAACCCTCCAA+AGG 0.523651 1_1:+59003522 Msa0032080:CDS
GGGGTATAGGAGGTGTGCCT+TGG 0.525597 1_1:+59005187 Msa0032080:three_prime_UTR
AATTCTAATGGAAAGGCACT+AGG 0.529623 1_1:+59003277 Msa0032080:CDS
CATGCAGGGACTTACCTTCA+GGG 0.530671 1_1:+59004417 Msa0032080:CDS
GTATACTGCGGGTAATGCAA+AGG 0.543009 1_1:+59003954 Msa0032080:CDS
GTAAAGGCTCCTCCTAATGC+TGG 0.544725 1_1:-59004126 None:intergenic
CTATACATACAGTTGATACA+TGG 0.547754 1_1:-59005162 None:intergenic
AGGACACGTTCTTGTCGCTC+GGG 0.549143 1_1:+59003384 Msa0032080:CDS
CCGGTGGAAGAATATCCCTT+GGG 0.549609 1_1:+59003203 Msa0032080:CDS
ATCAGCACATCGGTGGCCGT+TGG 0.551235 1_1:-59005044 None:intergenic
AGACCTTTGGAGATTCCAGA+TGG 0.551683 1_1:+59003313 Msa0032080:CDS
TTCCTTCACCTCTTCCACAA+TGG 0.552183 1_1:+59002672 Msa0032080:CDS
GACTCCATCACCAAGATACT+CGG 0.556847 1_1:-59004529 None:intergenic
TTACTCGTTAATATGGTGCA+TGG 0.557123 1_1:+59003474 Msa0032080:CDS
CGGCTTTATAACCCTTTGGA+GGG 0.557691 1_1:-59003534 None:intergenic
TCCAACAGAGCTTTCTGGTG+AGG 0.559304 1_1:+59004692 Msa0032080:CDS
GGTGAAGTTGCTCACGCGAA+GGG 0.560176 1_1:-59004265 None:intergenic
ATTATTTCTCGCATCTTCAT+CGG 0.561997 1_1:-59004055 None:intergenic
GCCGTTGGATCTAGATTGGA+CGG 0.562927 1_1:-59005029 None:intergenic
CGTGAATCATATACAATGGT+AGG 0.564534 1_1:-59004594 None:intergenic
ATGTATAGAAGGGGTATAGG+AGG 0.567366 1_1:+59005177 Msa0032080:three_prime_UTR
GCGAGAAATAATCTTAAGAA+GGG 0.567421 1_1:+59004066 Msa0032080:CDS
TTTCTCGCATCTTCATCGGT+AGG 0.570074 1_1:-59004051 None:intergenic
ATGCACAAATTCTAATGGAA+AGG 0.570132 1_1:+59003270 Msa0032080:CDS
AATTTACGCATTCACGCAGT+CGG 0.570803 1_1:+59004908 Msa0032080:three_prime_UTR
TATACTGCGGGTAATGCAAA+GGG 0.571900 1_1:+59003955 Msa0032080:CDS
CATGTAAAACCAGCATTAGG+AGG 0.572269 1_1:+59004117 Msa0032080:CDS
AACATTGAGATGAACAAGAT+CGG 0.572272 1_1:+59004213 Msa0032080:CDS
CAGAATAAGAGAGTAGAGGG+AGG 0.577200 1_1:+59002481 Msa0032080:five_prime_UTR
TGGTTGCCTAACCCTCCAAA+GGG 0.582899 1_1:+59003523 Msa0032080:CDS
CTTCGCGTGAGCAACTTCAC+CGG 0.582952 1_1:+59004267 Msa0032080:CDS
TCCAATGATCAGCCGTTGCG+AGG 0.585934 1_1:+59003364 Msa0032080:CDS
GGTGGGGCCAACTGGTCCAA+AGG 0.588533 1_1:+59004713 Msa0032080:CDS
AAAACAGAATAAGAGAGTAG+AGG 0.588580 1_1:+59002477 Msa0032080:five_prime_UTR
GCCAACTGGTCCAAAGGAGA+AGG 0.588714 1_1:+59004719 Msa0032080:CDS
GTGGCAGTAGTAACCAAGAC+AGG 0.592567 1_1:-59003341 None:intergenic
AAGGTTGTGTATTCCAAACC+TGG 0.594362 1_1:-59003687 None:intergenic
AATCCATCTGGAATCTCCAA+AGG 0.594832 1_1:-59003316 None:intergenic
ACATGCCATCATCGGTGTCG+TGG 0.595421 1_1:+59003908 Msa0032080:CDS
TCCGTCCAATCTAGATCCAA+CGG 0.595498 1_1:+59005028 Msa0032080:three_prime_UTR
ATAATACCTTGTGGCCATTG+TGG 0.596330 1_1:-59002686 None:intergenic
CTGATGATAGTGTGAATGTG+TGG 0.596339 1_1:+59005062 Msa0032080:three_prime_UTR
CTCATATATTGCAACCAACA+TGG 0.598495 1_1:-59004561 None:intergenic
AAGAGCCAAGGATTCTGACT+CGG 0.598761 1_1:-59003437 None:intergenic
CCTCTTCCACAATGGCCACA+AGG 0.602749 1_1:+59002680 Msa0032080:CDS
GGCACAAATTTACCTGGTGG+AGG 0.603301 1_1:+59003997 Msa0032080:CDS
GGTTGCAATATATGAGAGAG+TGG 0.604682 1_1:+59004568 Msa0032080:CDS
CATTGAGCATTACGGGCCAA+CGG 0.604760 1_1:+59003861 Msa0032080:CDS
CTATAAGTAACTACTATCCA+AGG 0.605011 1_1:-59005204 None:intergenic
TGAGAAATACATGCCATCAT+CGG 0.607689 1_1:+59003900 Msa0032080:CDS
CTAGCTAGAGGTGTATCTGT+CGG 0.607900 1_1:+59003724 Msa0032080:CDS
TATCACGGCACAAATTTACC+TGG 0.610377 1_1:+59003991 Msa0032080:CDS
AAGGAGAAGGACAATTGGCT+AGG 0.611868 1_1:+59004732 Msa0032080:CDS
TAGTTTATTCATCAAGACAT+GGG 0.614112 1_1:+59004379 Msa0032080:CDS
CCAAAGGGTTATAAAGCCGT+CGG 0.615266 1_1:+59003538 Msa0032080:CDS
CCTGGTGGAGGATATAATGA+TGG 0.615594 1_1:+59004009 Msa0032080:CDS
TCAGGATGAAAATATACCGT+TGG 0.617396 1_1:-59003877 None:intergenic
GGTGGTAACTACTATGCCGA+CGG 0.618472 1_1:-59003554 None:intergenic
CAAGTTTGGATGATCCCTGA+AGG 0.618933 1_1:-59004431 None:intergenic
GGTAAAGCTATAGATTATCA+CGG 0.619614 1_1:+59003976 Msa0032080:CDS
CCTTTACTGATATTGCAATG+TGG 0.624376 1_1:+59004142 Msa0032080:CDS
CACGGCACAAATTTACCTGG+TGG 0.625316 1_1:+59003994 Msa0032080:CDS
CCATCATTATATCCTCCACC+AGG 0.627153 1_1:-59004009 None:intergenic
GTTGCAATATATGAGAGAGT+GGG 0.627285 1_1:+59004569 Msa0032080:CDS
CACTATCATCAGCACATCGG+TGG 0.627838 1_1:-59005051 None:intergenic
GGCCATTGTGGAAGAGGTGA+AGG 0.627997 1_1:-59002674 None:intergenic
GCTGCCGAGTATCTTGGTGA+TGG 0.635810 1_1:+59004525 Msa0032080:CDS
GAAGGGAAACATAGAGAGTG+CGG 0.636222 1_1:+59004083 Msa0032080:CDS
TGAAGGTAAGTCCCTGCATG+AGG 0.636865 1_1:-59004414 None:intergenic
ATAGTTTATTCATCAAGACA+TGG 0.637290 1_1:+59004378 Msa0032080:CDS
ACAAGAACGTGTCCTCGCAA+CGG 0.637737 1_1:-59003376 None:intergenic
ATCAACTGTATGTATAGAAG+GGG 0.638480 1_1:+59005168 Msa0032080:three_prime_UTR
TAATGGAAGAGGAATGTGCT+TGG 0.639863 1_1:+59005404 Msa0032080:three_prime_UTR
CAGAGCTTTCTGGTGAGGTG+GGG 0.647482 1_1:+59004697 Msa0032080:CDS
TCTGTCGGAACATTCTTCTG+TGG 0.649136 1_1:+59003739 Msa0032080:CDS
TGATGATAGTGTGAATGTGT+GGG 0.650642 1_1:+59005063 Msa0032080:three_prime_UTR
AACAAGATCGGTGAACATGT+CGG 0.653405 1_1:+59004225 Msa0032080:CDS
CACTTGTTCAGAATCAAAGT+AGG 0.653816 1_1:-59003764 None:intergenic
AGAACGTGAATCATATACAA+TGG 0.654517 1_1:-59004598 None:intergenic
GCTAGCATACCTCTATCGCA+AGG 0.655324 1_1:-59003706 None:intergenic
ATGCTAGCTATCCTCATGCA+GGG 0.655682 1_1:+59004403 Msa0032080:CDS
GCAACGGCTGATCATTGGAG+TGG 0.664542 1_1:-59003360 None:intergenic
GAGTCATTACAGAACCATGT+TGG 0.666649 1_1:+59004547 Msa0032080:CDS
TTGCAATATATGAGAGAGTG+GGG 0.676061 1_1:+59004570 Msa0032080:CDS
GATAGAGGTATGCTAGCTAG+AGG 0.685865 1_1:+59003712 Msa0032080:CDS
GCAGTCGGCAGGCACGTCAG+TGG 0.703576 1_1:+59004923 Msa0032080:three_prime_UTR
TCACACTATCATCAGCACAT+CGG 0.710871 1_1:-59005054 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAAAATAATAGAAAAA+GGG - chr1_1:59002722-59002741 None:intergenic 10.0%
!! AAGAAAAAAATAATAGAAAA+AGG - chr1_1:59002723-59002742 None:intergenic 10.0%
!!! TTTTTAACTAACATAAACAT+TGG - chr1_1:59005266-59005285 None:intergenic 15.0%
!! TAAGATAATATTATTGCTAA+AGG + chr1_1:59005343-59005362 Msa0032080:three_prime_UTR 15.0%
!! AAAAATAATAGAAAAAGGGA+AGG - chr1_1:59002718-59002737 None:intergenic 20.0%
!!! ATATTTGTGCTGTTTTTTAT+TGG + chr1_1:59002871-59002890 Msa0032080:intron 20.0%
!!! AATACTATTTGATTTCGTTT+TGG + chr1_1:59003081-59003100 Msa0032080:intron 20.0%
!!! TGCTAAAAGTAATTTTATTC+TGG + chr1_1:59004476-59004495 Msa0032080:CDS 20.0%
!!! TTTGAGTTGATGATTAAAAC+AGG - chr1_1:59002769-59002788 None:intergenic 25.0%
!! TTACTGTGTTCTTTCTATTT+TGG + chr1_1:59002806-59002825 Msa0032080:intron 25.0%
!! GGTATTACTGTGATTAATTT+TGG + chr1_1:59002892-59002911 Msa0032080:intron 25.0%
!!! GTAGTATTTTTTGCAGATAT+TGG + chr1_1:59002920-59002939 Msa0032080:intron 25.0%
!!! TTTGATTTCGTTTTGGTTAT+TGG + chr1_1:59003088-59003107 Msa0032080:intron 25.0%
! TAAACAAGTTTGAGAAAGTT+TGG + chr1_1:59003245-59003264 Msa0032080:CDS 25.0%
!! TTTCACATTTTATAGACCTT+TGG + chr1_1:59003300-59003319 Msa0032080:CDS 25.0%
! CATATTAACGAGTAATTAAG+TGG - chr1_1:59003469-59003488 None:intergenic 25.0%
! CACTTAATTACTCGTTAATA+TGG + chr1_1:59003467-59003486 Msa0032080:CDS 25.0%
!! ATGATGAATGTGTTTACTTT+TGG + chr1_1:59003503-59003522 Msa0032080:CDS 25.0%
!!! ATTCGATTTGGAGTTTATTA+AGG + chr1_1:59004344-59004363 Msa0032080:CDS 25.0%
! TGTCTTGATGAATAAACTAT+TGG - chr1_1:59004378-59004397 None:intergenic 25.0%
! ATAGTTTATTCATCAAGACA+TGG + chr1_1:59004378-59004397 Msa0032080:CDS 25.0%
! TAGTTTATTCATCAAGACAT+GGG + chr1_1:59004379-59004398 Msa0032080:CDS 25.0%
! ACAGAAAACCTAACAAATAT+TGG - chr1_1:59004651-59004670 None:intergenic 25.0%
!!! AATATTTGTTAGGTTTTCTG+TGG + chr1_1:59004650-59004669 Msa0032080:CDS 25.0%
! CTGTTGGAAATAATTCAAAA+AGG - chr1_1:59004680-59004699 None:intergenic 25.0%
!! TCCTAATAATGGTATGTTTT+CGG + chr1_1:59004863-59004882 Msa0032080:three_prime_UTR 25.0%
!!! TATGTTTTCGGATTTTGATT+TGG + chr1_1:59004875-59004894 Msa0032080:three_prime_UTR 25.0%
! AAAATTCCAAACTTGATATC+TGG + chr1_1:59005005-59005024 Msa0032080:three_prime_UTR 25.0%
! ACACTGAAAACAAAAGAATT+TGG - chr1_1:59005108-59005127 None:intergenic 25.0%
! TATCAACTGTATGTATAGAA+GGG + chr1_1:59005167-59005186 Msa0032080:three_prime_UTR 25.0%
! GTATAATTACGCAAAAACTT+AGG + chr1_1:59005292-59005311 Msa0032080:three_prime_UTR 25.0%
! ATATTATTGCTAAAGGTTGA+TGG + chr1_1:59005350-59005369 Msa0032080:three_prime_UTR 25.0%
!! TATTATTGCTAAAGGTTGAT+GGG + chr1_1:59005351-59005370 Msa0032080:three_prime_UTR 25.0%
AAAACAGAATAAGAGAGTAG+AGG + chr1_1:59002477-59002496 Msa0032080:five_prime_UTR 30.0%
AAACAGAATAAGAGAGTAGA+GGG + chr1_1:59002478-59002497 Msa0032080:five_prime_UTR 30.0%
!! AGGTTGATAATAATACCTTG+TGG - chr1_1:59002698-59002717 None:intergenic 30.0%
!! TGTAACTTGTATTTTCCCAA+GGG - chr1_1:59003221-59003240 None:intergenic 30.0%
!! TTGTAACTTGTATTTTCCCA+AGG - chr1_1:59003222-59003241 None:intergenic 30.0%
ATGCACAAATTCTAATGGAA+AGG + chr1_1:59003270-59003289 Msa0032080:CDS 30.0%
GTCAAAGAAAAATTCTTTCC+AGG + chr1_1:59003669-59003688 Msa0032080:CDS 30.0%
AGAAAAATTCTTTCCAGGTT+TGG + chr1_1:59003674-59003693 Msa0032080:CDS 30.0%
GGTAAAGCTATAGATTATCA+CGG + chr1_1:59003976-59003995 Msa0032080:CDS 30.0%
! ATTATTTCTCGCATCTTCAT+CGG - chr1_1:59004058-59004077 None:intergenic 30.0%
TGCGAGAAATAATCTTAAGA+AGG + chr1_1:59004065-59004084 Msa0032080:CDS 30.0%
GCGAGAAATAATCTTAAGAA+GGG + chr1_1:59004066-59004085 Msa0032080:CDS 30.0%
CTTTACTGATATTGCAATGT+GGG + chr1_1:59004143-59004162 Msa0032080:CDS 30.0%
GTTCATCAATGACACTTTAA+GGG - chr1_1:59004196-59004215 None:intergenic 30.0%
TGTTCATCAATGACACTTTA+AGG - chr1_1:59004197-59004216 None:intergenic 30.0%
AACATTGAGATGAACAAGAT+CGG + chr1_1:59004213-59004232 Msa0032080:CDS 30.0%
AGAACGTGAATCATATACAA+TGG - chr1_1:59004601-59004620 None:intergenic 30.0%
ACATGCTTCCAATATTTGTT+AGG + chr1_1:59004640-59004659 Msa0032080:CDS 30.0%
TCCAATCATTCTTATGGTAA+AGG + chr1_1:59004820-59004839 Msa0032080:three_prime_UTR 30.0%
TCCTTTACCATAAGAATGAT+TGG - chr1_1:59004824-59004843 None:intergenic 30.0%
TCATCTTTCTGTCCTAATAA+TGG + chr1_1:59004852-59004871 Msa0032080:three_prime_UTR 30.0%
TCCGAAAACATACCATTATT+AGG - chr1_1:59004867-59004886 None:intergenic 30.0%
!!! AGCGAACAGATTTTGATTTT+TGG + chr1_1:59004975-59004994 Msa0032080:three_prime_UTR 30.0%
ACAAAAGAATTTGGATTGTC+TGG - chr1_1:59005099-59005118 None:intergenic 30.0%
! CTATACATACAGTTGATACA+TGG - chr1_1:59005165-59005184 None:intergenic 30.0%
GTATCAACTGTATGTATAGA+AGG + chr1_1:59005166-59005185 Msa0032080:three_prime_UTR 30.0%
ATCAACTGTATGTATAGAAG+GGG + chr1_1:59005168-59005187 Msa0032080:three_prime_UTR 30.0%
CTATAAGTAACTACTATCCA+AGG - chr1_1:59005207-59005226 None:intergenic 30.0%
GTAGTTACTTATAGCTTTCT+TGG + chr1_1:59005213-59005232 Msa0032080:three_prime_UTR 30.0%
AGGACATGTATATACATTTG+TGG + chr1_1:59005312-59005331 Msa0032080:three_prime_UTR 30.0%
TTCATTCGTATTGCTTGTAA+TGG + chr1_1:59005387-59005406 Msa0032080:three_prime_UTR 30.0%
!!! TTGGTTTTGAGTGTTCTTGT+TGG + chr1_1:59002603-59002622 Msa0032080:CDS 35.0%
!!! TGGTTTTGAGTGTTCTTGTT+GGG + chr1_1:59002604-59002623 Msa0032080:CDS 35.0%
TGGAGATGCACAAATTCTAA+TGG + chr1_1:59003265-59003284 Msa0032080:CDS 35.0%
!! AATTCTAATGGAAAGGCACT+AGG + chr1_1:59003277-59003296 Msa0032080:CDS 35.0%
TTACTCGTTAATATGGTGCA+TGG + chr1_1:59003474-59003493 Msa0032080:CDS 35.0%
CATCGAACTTCTTCAACTTT+CGG - chr1_1:59003592-59003611 None:intergenic 35.0%
CTCACAAACTTCTGTTAGAT+CGG - chr1_1:59003623-59003642 None:intergenic 35.0%
CACTTGTTCAGAATCAAAGT+AGG - chr1_1:59003767-59003786 None:intergenic 35.0%
CTACTTTGATTCTGAACAAG+TGG + chr1_1:59003765-59003784 Msa0032080:CDS 35.0%
TCAGGATGAAAATATACCGT+TGG - chr1_1:59003880-59003899 None:intergenic 35.0%
TGAGAAATACATGCCATCAT+CGG + chr1_1:59003900-59003919 Msa0032080:CDS 35.0%
! TGGAGCAATTTTGTATACTG+CGG + chr1_1:59003942-59003961 Msa0032080:CDS 35.0%
!! GATATAATGATGGTGCGTTT+TGG + chr1_1:59004019-59004038 Msa0032080:CDS 35.0%
GTTCATGTAAAACCAGCATT+AGG + chr1_1:59004114-59004133 Msa0032080:CDS 35.0%
CCACATTGCAATATCAGTAA+AGG - chr1_1:59004145-59004164 None:intergenic 35.0%
CCTTTACTGATATTGCAATG+TGG + chr1_1:59004142-59004161 Msa0032080:CDS 35.0%
! ATGGGTTAATGCATTCGATT+TGG + chr1_1:59004332-59004351 Msa0032080:CDS 35.0%
CTCATATATTGCAACCAACA+TGG - chr1_1:59004564-59004583 None:intergenic 35.0%
GTTGCAATATATGAGAGAGT+GGG + chr1_1:59004569-59004588 Msa0032080:CDS 35.0%
TTGCAATATATGAGAGAGTG+GGG + chr1_1:59004570-59004589 Msa0032080:CDS 35.0%
CGTGAATCATATACAATGGT+AGG - chr1_1:59004597-59004616 None:intergenic 35.0%
TTATTTCCAACAGAGCTTTC+TGG + chr1_1:59004687-59004706 Msa0032080:CDS 35.0%
! TGATGATAGTGTGAATGTGT+GGG + chr1_1:59005063-59005082 Msa0032080:three_prime_UTR 35.0%
!! TGTTTTCAGTGTGTCATTGA+TGG + chr1_1:59005116-59005135 Msa0032080:three_prime_UTR 35.0%
! TGTATGTATAGAAGGGGTAT+AGG + chr1_1:59005174-59005193 Msa0032080:three_prime_UTR 35.0%
!! TGTGGTTGGTAAGAGATGTT+TGG + chr1_1:59002584-59002603 Msa0032080:exon 40.0%
GGATCAGAGTCAAAGAATTC+TGG - chr1_1:59002638-59002657 None:intergenic 40.0%
AGAGGTGAAGGAAGAGAAAA+GGG - chr1_1:59002665-59002684 None:intergenic 40.0%
AAGAGGTGAAGGAAGAGAAA+AGG - chr1_1:59002666-59002685 None:intergenic 40.0%
ATAATACCTTGTGGCCATTG+TGG - chr1_1:59002689-59002708 None:intergenic 40.0%
! AATCCATCTGGAATCTCCAA+AGG - chr1_1:59003319-59003338 None:intergenic 40.0%
GGAACAATCAGCTTGAGATT+TGG - chr1_1:59003419-59003438 None:intergenic 40.0%
!! AAGTGGCTTTTTAAGAGCCA+AGG - chr1_1:59003452-59003471 None:intergenic 40.0%
! TTATAACCCTTTGGAGGGTT+AGG - chr1_1:59003532-59003551 None:intergenic 40.0%
AACTTTCGGTTCATCTGGAT+TGG - chr1_1:59003578-59003597 None:intergenic 40.0%
TCTTCAACTTTCGGTTCATC+TGG - chr1_1:59003583-59003602 None:intergenic 40.0%
AAGGTTGTGTATTCCAAACC+TGG - chr1_1:59003690-59003709 None:intergenic 40.0%
AATACACAACCTTGCGATAG+AGG + chr1_1:59003697-59003716 Msa0032080:CDS 40.0%
! GCATGAATCTGGTTCAGATT+CGG - chr1_1:59003838-59003857 None:intergenic 40.0%
CATGCTCTCATTGAGCATTA+CGG + chr1_1:59003853-59003872 Msa0032080:CDS 40.0%
ATGCTCTCATTGAGCATTAC+GGG + chr1_1:59003854-59003873 Msa0032080:CDS 40.0%
GATGGCATGTATTTCTCATC+AGG - chr1_1:59003898-59003917 None:intergenic 40.0%
!!! GTGTCGTGGTTTTTCAAGAA+TGG + chr1_1:59003922-59003941 Msa0032080:CDS 40.0%
! GGAGCAATTTTGTATACTGC+GGG + chr1_1:59003943-59003962 Msa0032080:CDS 40.0%
TATACTGCGGGTAATGCAAA+GGG + chr1_1:59003955-59003974 Msa0032080:CDS 40.0%
TATCACGGCACAAATTTACC+TGG + chr1_1:59003991-59004010 Msa0032080:CDS 40.0%
CATGTAAAACCAGCATTAGG+AGG + chr1_1:59004117-59004136 Msa0032080:CDS 40.0%
!!! TGGGTTTTTTGCCCATTCAA+TGG + chr1_1:59004162-59004181 Msa0032080:CDS 40.0%
! AATGACACTTTAAGGGTTGC+AGG - chr1_1:59004189-59004208 None:intergenic 40.0%
AACAAGATCGGTGAACATGT+CGG + chr1_1:59004225-59004244 Msa0032080:CDS 40.0%
AAAAACAGACCAAAGCTCTC+CGG - chr1_1:59004289-59004308 None:intergenic 40.0%
!!! GTTTTTTTCTCTGAGCACAG+TGG + chr1_1:59004303-59004322 Msa0032080:CDS 40.0%
GGATCATCCAAACTTGGAAT+AGG + chr1_1:59004438-59004457 Msa0032080:CDS 40.0%
GAGTCATTACAGAACCATGT+TGG + chr1_1:59004547-59004566 Msa0032080:CDS 40.0%
GGTTGCAATATATGAGAGAG+TGG + chr1_1:59004568-59004587 Msa0032080:CDS 40.0%
GAGAAATGGCTAGTAGCATA+TGG - chr1_1:59004790-59004809 None:intergenic 40.0%
GCTGGATCCAATCATTCTTA+TGG + chr1_1:59004814-59004833 Msa0032080:three_prime_UTR 40.0%
CTGCGTGAATGCGTAAATTT+GGG - chr1_1:59004907-59004926 None:intergenic 40.0%
ACTGCGTGAATGCGTAAATT+TGG - chr1_1:59004908-59004927 None:intergenic 40.0%
AATTTACGCATTCACGCAGT+CGG + chr1_1:59004908-59004927 Msa0032080:three_prime_UTR 40.0%
TCACACTATCATCAGCACAT+CGG - chr1_1:59005057-59005076 None:intergenic 40.0%
! CTGATGATAGTGTGAATGTG+TGG + chr1_1:59005062-59005081 Msa0032080:three_prime_UTR 40.0%
! ATGTATAGAAGGGGTATAGG+AGG + chr1_1:59005177-59005196 Msa0032080:three_prime_UTR 40.0%
! CGTATTGCTTGTAATGGAAG+AGG + chr1_1:59005393-59005412 Msa0032080:three_prime_UTR 40.0%
TAATGGAAGAGGAATGTGCT+TGG + chr1_1:59005404-59005423 Msa0032080:three_prime_UTR 40.0%
CAGAATAAGAGAGTAGAGGG+AGG + chr1_1:59002481-59002500 Msa0032080:five_prime_UTR 45.0%
AATAAGAGAGTAGAGGGAGG+AGG + chr1_1:59002484-59002503 Msa0032080:five_prime_UTR 45.0%
GAGAGAGAGAGAGAGAAGAA+GGG - chr1_1:59002559-59002578 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAAGA+AGG - chr1_1:59002560-59002579 None:intergenic 45.0%
! CTCTCTCTCTCTCTCTTTTG+TGG + chr1_1:59002566-59002585 Msa0032080:five_prime_UTR 45.0%
! CTCTCTCTCTCTTTTGTGGT+TGG + chr1_1:59002570-59002589 Msa0032080:five_prime_UTR 45.0%
GAAGGAAGAGAAAAGGGAAG+TGG - chr1_1:59002659-59002678 None:intergenic 45.0%
TTCCTTCACCTCTTCCACAA+TGG + chr1_1:59002672-59002691 Msa0032080:CDS 45.0%
AGCTTGTGAGTGATCTACTC+AGG + chr1_1:59003169-59003188 Msa0032080:intron 45.0%
TTGTGAGTGATCTACTCAGG+TGG + chr1_1:59003172-59003191 Msa0032080:intron 45.0%
! AGACCTTTGGAGATTCCAGA+TGG + chr1_1:59003313-59003332 Msa0032080:CDS 45.0%
CCAAGACAGGAAAATCCATC+TGG - chr1_1:59003331-59003350 None:intergenic 45.0%
!! CCAGATGGATTTTCCTGTCT+TGG + chr1_1:59003328-59003347 Msa0032080:CDS 45.0%
TTGTTCCGAGTCAGAATCCT+TGG + chr1_1:59003432-59003451 Msa0032080:CDS 45.0%
AAGAGCCAAGGATTCTGACT+CGG - chr1_1:59003440-59003459 None:intergenic 45.0%
! CGGCTTTATAACCCTTTGGA+GGG - chr1_1:59003537-59003556 None:intergenic 45.0%
! ACGGCTTTATAACCCTTTGG+AGG - chr1_1:59003538-59003557 None:intergenic 45.0%
CCAAAGGGTTATAAAGCCGT+CGG + chr1_1:59003538-59003557 Msa0032080:CDS 45.0%
! TTTCGGTTCATCTGGATTGG+TGG - chr1_1:59003575-59003594 None:intergenic 45.0%
! GATAGAGGTATGCTAGCTAG+AGG + chr1_1:59003712-59003731 Msa0032080:CDS 45.0%
! CTAGCTAGAGGTGTATCTGT+CGG + chr1_1:59003724-59003743 Msa0032080:CDS 45.0%
TCTGTCGGAACATTCTTCTG+TGG + chr1_1:59003739-59003758 Msa0032080:CDS 45.0%
! GCTCAATGAGAGCATGAATC+TGG - chr1_1:59003849-59003868 None:intergenic 45.0%
AAAAACCACGACACCGATGA+TGG - chr1_1:59003916-59003935 None:intergenic 45.0%
GTATACTGCGGGTAATGCAA+AGG + chr1_1:59003954-59003973 Msa0032080:CDS 45.0%
CCATCATTATATCCTCCACC+AGG - chr1_1:59004012-59004031 None:intergenic 45.0%
CCTGGTGGAGGATATAATGA+TGG + chr1_1:59004009-59004028 Msa0032080:CDS 45.0%
TTTCTCGCATCTTCATCGGT+AGG - chr1_1:59004054-59004073 None:intergenic 45.0%
GAAGGGAAACATAGAGAGTG+CGG + chr1_1:59004083-59004102 Msa0032080:CDS 45.0%
! TTTTTCTCTGAGCACAGTGG+AGG + chr1_1:59004306-59004325 Msa0032080:CDS 45.0%
TGAGCACAGTGGAGGTAAAT+GGG + chr1_1:59004314-59004333 Msa0032080:CDS 45.0%
ATGCTAGCTATCCTCATGCA+GGG + chr1_1:59004403-59004422 Msa0032080:CDS 45.0%
CAAGTTTGGATGATCCCTGA+AGG - chr1_1:59004434-59004453 None:intergenic 45.0%
CTTCAGGGATCATCCAAACT+TGG + chr1_1:59004432-59004451 Msa0032080:CDS 45.0%
GCGAACTCCTATTCCAAGTT+TGG - chr1_1:59004448-59004467 None:intergenic 45.0%
ATTGTTGCTGCCGAGTATCT+TGG + chr1_1:59004519-59004538 Msa0032080:CDS 45.0%
GACTCCATCACCAAGATACT+CGG - chr1_1:59004532-59004551 None:intergenic 45.0%
GTCCAAAGGAGAAGGACAAT+TGG + chr1_1:59004727-59004746 Msa0032080:CDS 45.0%
AGCCAATTGTCCTTCTCCTT+TGG - chr1_1:59004732-59004751 None:intergenic 45.0%
AAGGAGAAGGACAATTGGCT+AGG + chr1_1:59004732-59004751 Msa0032080:CDS 45.0%
ACTAGCCATTTCTCATGAGC+TGG + chr1_1:59004796-59004815 Msa0032080:three_prime_UTR 45.0%
TGGATCCAGCTCATGAGAAA+TGG - chr1_1:59004804-59004823 None:intergenic 45.0%
GACGGACCAGATATCAAGTT+TGG - chr1_1:59005014-59005033 None:intergenic 45.0%
TCCGTCCAATCTAGATCCAA+CGG + chr1_1:59005028-59005047 Msa0032080:three_prime_UTR 45.0%
GATACATGGCGACGATATCT+TGG - chr1_1:59005151-59005170 None:intergenic 45.0%
TGAGTGATCTACTCAGGTGG+TGG + chr1_1:59003175-59003194 Msa0032080:intron 50.0%
!! TACTCAGGTGGTGGTTTTGC+CGG + chr1_1:59003184-59003203 Msa0032080:intron 50.0%
CCCAAGGGATATTCTTCCAC+CGG - chr1_1:59003206-59003225 None:intergenic 50.0%
CCGGTGGAAGAATATCCCTT+GGG + chr1_1:59003203-59003222 Msa0032080:CDS 50.0%
GTGGCAGTAGTAACCAAGAC+AGG - chr1_1:59003344-59003363 None:intergenic 50.0%
ACAAGAACGTGTCCTCGCAA+CGG - chr1_1:59003379-59003398 None:intergenic 50.0%
TTGGTTGCCTAACCCTCCAA+AGG + chr1_1:59003522-59003541 Msa0032080:CDS 50.0%
TGGTTGCCTAACCCTCCAAA+GGG + chr1_1:59003523-59003542 Msa0032080:CDS 50.0%
! CCGACGGCTTTATAACCCTT+TGG - chr1_1:59003541-59003560 None:intergenic 50.0%
GGTGGTAACTACTATGCCGA+CGG - chr1_1:59003557-59003576 None:intergenic 50.0%
GCTAGCATACCTCTATCGCA+AGG - chr1_1:59003709-59003728 None:intergenic 50.0%
CATTGAGCATTACGGGCCAA+CGG + chr1_1:59003861-59003880 Msa0032080:CDS 50.0%
CACGGCACAAATTTACCTGG+TGG + chr1_1:59003994-59004013 Msa0032080:CDS 50.0%
GGCACAAATTTACCTGGTGG+AGG + chr1_1:59003997-59004016 Msa0032080:CDS 50.0%
GTAAAGGCTCCTCCTAATGC+TGG - chr1_1:59004129-59004148 None:intergenic 50.0%
GGGTTGCAGGTCCATTGAAT+GGG - chr1_1:59004176-59004195 None:intergenic 50.0%
AGGGTTGCAGGTCCATTGAA+TGG - chr1_1:59004177-59004196 None:intergenic 50.0%
TCGGTGAACATGTCGGTGAT+TGG + chr1_1:59004232-59004251 Msa0032080:CDS 50.0%
CGGTGAACATGTCGGTGATT+GGG + chr1_1:59004233-59004252 Msa0032080:CDS 50.0%
CTGAGCACAGTGGAGGTAAA+TGG + chr1_1:59004313-59004332 Msa0032080:CDS 50.0%
CATGCTAGCTATCCTCATGC+AGG + chr1_1:59004402-59004421 Msa0032080:CDS 50.0%
TGAAGGTAAGTCCCTGCATG+AGG - chr1_1:59004417-59004436 None:intergenic 50.0%
TCATGCAGGGACTTACCTTC+AGG + chr1_1:59004416-59004435 Msa0032080:CDS 50.0%
CATGCAGGGACTTACCTTCA+GGG + chr1_1:59004417-59004436 Msa0032080:CDS 50.0%
! TCCAACAGAGCTTTCTGGTG+AGG + chr1_1:59004692-59004711 Msa0032080:CDS 50.0%
ACCTCACCAGAAAGCTCTGT+TGG - chr1_1:59004696-59004715 None:intergenic 50.0%
! AACAGAGCTTTCTGGTGAGG+TGG + chr1_1:59004695-59004714 Msa0032080:CDS 50.0%
! ACAGAGCTTTCTGGTGAGGT+GGG + chr1_1:59004696-59004715 Msa0032080:CDS 50.0%
TCCTTCTCCTTTGGACCAGT+TGG - chr1_1:59004723-59004742 None:intergenic 50.0%
GCCGTTGGATCTAGATTGGA+CGG - chr1_1:59005032-59005051 None:intergenic 50.0%
CACTATCATCAGCACATCGG+TGG - chr1_1:59005054-59005073 None:intergenic 50.0%
AAGAGAGTAGAGGGAGGAGG+AGG + chr1_1:59002487-59002506 Msa0032080:five_prime_UTR 55.0%
GGCCATTGTGGAAGAGGTGA+AGG - chr1_1:59002677-59002696 None:intergenic 55.0%
CCTTGTGGCCATTGTGGAAG+AGG - chr1_1:59002683-59002702 None:intergenic 55.0%
CCTCTTCCACAATGGCCACA+AGG + chr1_1:59002680-59002699 Msa0032080:CDS 55.0%
GCCGGTGGAAGAATATCCCT+TGG + chr1_1:59003202-59003221 Msa0032080:CDS 55.0%
GCAACGGCTGATCATTGGAG+TGG - chr1_1:59003363-59003382 None:intergenic 55.0%
TCCAATGATCAGCCGTTGCG+AGG + chr1_1:59003364-59003383 Msa0032080:CDS 55.0%
TCCTCGCAACGGCTGATCAT+TGG - chr1_1:59003368-59003387 None:intergenic 55.0%
GAGGACACGTTCTTGTCGCT+CGG + chr1_1:59003383-59003402 Msa0032080:CDS 55.0%
AGGACACGTTCTTGTCGCTC+GGG + chr1_1:59003384-59003403 Msa0032080:CDS 55.0%
!! ACATGCCATCATCGGTGTCG+TGG + chr1_1:59003908-59003927 Msa0032080:CDS 55.0%
GGTGAAGTTGCTCACGCGAA+GGG - chr1_1:59004268-59004287 None:intergenic 55.0%
CTTCGCGTGAGCAACTTCAC+CGG + chr1_1:59004267-59004286 Msa0032080:CDS 55.0%
GCAACTTCACCGGAGAGCTT+TGG + chr1_1:59004277-59004296 Msa0032080:CDS 55.0%
GCTGCCGAGTATCTTGGTGA+TGG + chr1_1:59004525-59004544 Msa0032080:CDS 55.0%
! CAGAGCTTTCTGGTGAGGTG+GGG + chr1_1:59004697-59004716 Msa0032080:CDS 55.0%
GCCAACTGGTCCAAAGGAGA+AGG + chr1_1:59004719-59004738 Msa0032080:CDS 55.0%
GGTGGCCGTTGGATCTAGAT+TGG - chr1_1:59005036-59005055 None:intergenic 55.0%
AGAGTAGAGGGAGGAGGAGG+AGG + chr1_1:59002490-59002509 Msa0032080:five_prime_UTR 60.0%
!! TCAGGTGGTGGTTTTGCCGG+TGG + chr1_1:59003187-59003206 Msa0032080:intron 60.0%
CGGTGAAGTTGCTCACGCGA+AGG - chr1_1:59004269-59004288 None:intergenic 60.0%
TACGCATTCACGCAGTCGGC+AGG + chr1_1:59004912-59004931 Msa0032080:three_prime_UTR 60.0%
GCAGGCACGTCAGTGGTCAT+TGG + chr1_1:59004930-59004949 Msa0032080:three_prime_UTR 60.0%
ATCAGCACATCGGTGGCCGT+TGG - chr1_1:59005047-59005066 None:intergenic 60.0%
! GGGGTATAGGAGGTGTGCCT+TGG + chr1_1:59005187-59005206 Msa0032080:three_prime_UTR 60.0%
TCTGGTGAGGTGGGGCCAAC+TGG + chr1_1:59004705-59004724 Msa0032080:CDS 65.0%
GGTGGGGCCAACTGGTCCAA+AGG + chr1_1:59004713-59004732 Msa0032080:CDS 65.0%
GCAGTCGGCAGGCACGTCAG+TGG + chr1_1:59004923-59004942 Msa0032080:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 59002428 59005459 59002428 ID=Msa0032080;Name=Msa0032080
chr1_1 mRNA 59002428 59005459 59002428 ID=Msa0032080-mRNA-1;Parent=Msa0032080;Name=Msa0032080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=171|1|1|1|1|1|2|689|560
chr1_1 exon 59002428 59002701 59002428 ID=Msa0032080-mRNA-1:exon:18109;Parent=Msa0032080-mRNA-1
chr1_1 exon 59003191 59005459 59003191 ID=Msa0032080-mRNA-1:exon:18110;Parent=Msa0032080-mRNA-1
chr1_1 five_prime_UTR 59002428 59002598 59002428 ID=Msa0032080-mRNA-1:five_prime_utr;Parent=Msa0032080-mRNA-1
chr1_1 CDS 59002599 59002701 59002599 ID=Msa0032080-mRNA-1:cds;Parent=Msa0032080-mRNA-1
chr1_1 CDS 59003191 59004770 59003191 ID=Msa0032080-mRNA-1:cds;Parent=Msa0032080-mRNA-1
chr1_1 three_prime_UTR 59004771 59005459 59004771 ID=Msa0032080-mRNA-1:three_prime_utr;Parent=Msa0032080-mRNA-1
Gene Sequence

>Msa0032080

ATGTTTGGTTTTGAGTGTTCTTGTTGGGATAGTTTGCCAGAATTCTTTGACTCTGATCCACTTCCCTTTTCTCTTCCTTCACCTCTTCCACAATGGCCACAAGGTGGTGGTTTTGCCGGTGGAAGAATATCCCTTGGGAAAATACAAGTTACAAAAGTAAACAAGTTTGAGAAAGTTTGGAGATGCACAAATTCTAATGGAAAGGCACTAGGTTTCACATTTTATAGACCTTTGGAGATTCCAGATGGATTTTCCTGTCTTGGTTACTACTGCCACTCCAATGATCAGCCGTTGCGAGGACACGTTCTTGTCGCTCGGGAGATTACTTCCAAATCTCAAGCTGATTGTTCCGAGTCAGAATCCTTGGCTCTTAAAAAGCCACTTAATTACTCGTTAATATGGTGCATGGACTCACATGATGAATGTGTTTACTTTTGGTTGCCTAACCCTCCAAAGGGTTATAAAGCCGTCGGCATAGTAGTTACCACCAATCCAGATGAACCGAAAGTTGAAGAAGTTCGATGCGTGCGAACCGATCTAACAGAAGTTTGTGAGACATCTGATCTCTTACTAACAATAAAGTCAAAGAAAAATTCTTTCCAGGTTTGGAATACACAACCTTGCGATAGAGGTATGCTAGCTAGAGGTGTATCTGTCGGAACATTCTTCTGTGGCACCTACTTTGATTCTGAACAAGTGGTTGATGTTGTGTGTTTGAAGAATCTTGATTCTTCGTTGCACGCAATGCCGAATCTGAACCAGATTCATGCTCTCATTGAGCATTACGGGCCAACGGTATATTTTCATCCTGATGAGAAATACATGCCATCATCGGTGTCGTGGTTTTTCAAGAATGGAGCAATTTTGTATACTGCGGGTAATGCAAAGGGTAAAGCTATAGATTATCACGGCACAAATTTACCTGGTGGAGGATATAATGATGGTGCGTTTTGGATTGATTTGCCTACCGATGAAGATGCGAGAAATAATCTTAAGAAGGGAAACATAGAGAGTGCGGAACTCTATGTTCATGTAAAACCAGCATTAGGAGGAGCCTTTACTGATATTGCAATGTGGGTTTTTTGCCCATTCAATGGACCTGCAACCCTTAAAGTGTCATTGATGAACATTGAGATGAACAAGATCGGTGAACATGTCGGTGATTGGGAACACTTCACCCTTCGCGTGAGCAACTTCACCGGAGAGCTTTGGTCTGTTTTTTTCTCTGAGCACAGTGGAGGTAAATGGGTTAATGCATTCGATTTGGAGTTTATTAAGGAGAATAAACCAATAGTTTATTCATCAAGACATGGGCATGCTAGCTATCCTCATGCAGGGACTTACCTTCAGGGATCATCCAAACTTGGAATAGGAGTTCGCAACGATGCTGCTAAAAGTAATTTTATTCTGGATTCGAGCTTTAGATACAAGATTGTTGCTGCCGAGTATCTTGGTGATGGAGTCATTACAGAACCATGTTGGTTGCAATATATGAGAGAGTGGGGTCCTACCATTGTATATGATTCACGTTCTGAAATAGAGAAGATAATAGACATGCTTCCAATATTTGTTAGGTTTTCTGTGGAGAACCTTTTTGAATTATTTCCAACAGAGCTTTCTGGTGAGGTGGGGCCAACTGGTCCAAAGGAGAAGGACAATTGGCTAGGTGATGAATATTGCTAG
Protein sequence

>Msa0032080

MFGFECSCWDSLPEFFDSDPLPFSLPSPLPQWPQGGGFAGGRISLGKIQVTKVNKFEKVWRCTNSNGKALGFTFYRPLEIPDGFSCLGYYCHSNDQPLRGHVLVAREITSKSQADCSESESLALKKPLNYSLIWCMDSHDECVYFWLPNPPKGYKAVGIVVTTNPDEPKVEEVRCVRTDLTEVCETSDLLLTIKSKKNSFQVWNTQPCDRGMLARGVSVGTFFCGTYFDSEQVVDVVCLKNLDSSLHAMPNLNQIHALIEHYGPTVYFHPDEKYMPSSVSWFFKNGAILYTAGNAKGKAIDYHGTNLPGGGYNDGAFWIDLPTDEDARNNLKKGNIESAELYVHVKPALGGAFTDIAMWVFCPFNGPATLKVSLMNIEMNKIGEHVGDWEHFTLRVSNFTGELWSVFFSEHSGGKWVNAFDLEFIKENKPIVYSSRHGHASYPHAGTYLQGSSKLGIGVRNDAAKSNFILDSSFRYKIVAAEYLGDGVITEPCWLQYMREWGPTIVYDSRSEIEKIIDMLPIFVRFSVENLFELFPTELSGEVGPTGPKEKDNWLGDEYC*