Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815520 | XP_003616166.2 | 94.812 | 559 | 14 | 1 | 1 | 544 | 1 | 559 | 0.0 | 1097 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815520 | sp|Q9FX32|SUS6_ARATH | 67.993 | 553 | 162 | 1 | 7 | 544 | 9 | 561 | 0.0 | 804 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815520 | G7KFT7 | 94.812 | 559 | 14 | 1 | 1 | 544 | 1 | 559 | 0.0 | 1097 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0815520 | Msa0855720 | 0.913736 | 4.352564e-84 | -8.615850e-47 |
| Msa0815520 | Msa1219820 | 0.827803 | 1.278413e-54 | -8.615850e-47 |
| Msa0815520 | Msa1267050 | 0.834670 | 2.620458e-56 | -8.615850e-47 |
| Msa0815520 | Msa1267180 | 0.834985 | 2.182864e-56 | -8.615850e-47 |
| Msa0815520 | Msa1401520 | 0.828271 | 9.865846e-55 | -8.615850e-47 |
| Msa0815520 | Msa1429860 | 0.807662 | 4.530434e-50 | -8.615850e-47 |
| Msa0268100 | Msa0815520 | 0.830391 | 3.016203e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815520 | MtrunA17_Chr5g0433761 | 94.812 | 559 | 14 | 1 | 1 | 544 | 1 | 559 | 0.0 | 1097 |
| Msa0815520 | MtrunA17_Chr3g0109841 | 78.826 | 562 | 101 | 2 | 1 | 544 | 1 | 562 | 0.0 | 926 |
| Msa0815520 | MtrunA17_Chr6g0481131 | 67.642 | 547 | 162 | 1 | 13 | 544 | 15 | 561 | 0.0 | 774 |
| Msa0815520 | MtrunA17_Chr6g0481171 | 68.065 | 429 | 122 | 1 | 131 | 544 | 5 | 433 | 0.0 | 597 |
| Msa0815520 | MtrunA17_Chr7g0269581 | 52.182 | 550 | 244 | 3 | 9 | 543 | 9 | 554 | 0.0 | 590 |
| Msa0815520 | MtrunA17_Chr1g0195241 | 55.048 | 525 | 220 | 2 | 34 | 543 | 16 | 539 | 0.0 | 586 |
| Msa0815520 | MtrunA17_Chr4g0070011 | 50.811 | 555 | 255 | 3 | 4 | 543 | 3 | 554 | 0.0 | 578 |
| Msa0815520 | MtrunA17_Chr2g0301621 | 50.452 | 553 | 256 | 3 | 6 | 543 | 3 | 552 | 0.0 | 575 |
| Msa0815520 | MtrunA17_Chr4g0009181 | 50.746 | 67 | 32 | 1 | 7 | 72 | 10 | 76 | 1.59e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815520 | AT1G73370.3 | 67.993 | 553 | 162 | 1 | 7 | 544 | 9 | 561 | 0.0 | 804 |
| Msa0815520 | AT1G73370.1 | 67.993 | 553 | 162 | 1 | 7 | 544 | 9 | 561 | 0.0 | 804 |
| Msa0815520 | AT5G37180.1 | 66.138 | 567 | 170 | 4 | 10 | 560 | 5 | 565 | 0.0 | 779 |
| Msa0815520 | AT1G73370.2 | 68.859 | 517 | 146 | 1 | 43 | 544 | 1 | 517 | 0.0 | 753 |
| Msa0815520 | AT4G02280.1 | 52.899 | 552 | 244 | 2 | 7 | 543 | 6 | 556 | 0.0 | 605 |
| Msa0815520 | AT5G49190.1 | 50.719 | 556 | 246 | 4 | 9 | 543 | 5 | 553 | 0.0 | 572 |
| Msa0815520 | AT5G37180.2 | 71.240 | 379 | 92 | 2 | 197 | 560 | 1 | 377 | 0.0 | 567 |
| Msa0815520 | AT5G49190.2 | 52.158 | 533 | 227 | 4 | 32 | 543 | 18 | 543 | 0.0 | 566 |
| Msa0815520 | AT5G20830.3 | 50.271 | 553 | 255 | 4 | 7 | 543 | 8 | 556 | 0.0 | 553 |
| Msa0815520 | AT5G20830.2 | 50.271 | 553 | 255 | 4 | 7 | 543 | 8 | 556 | 0.0 | 553 |
| Msa0815520 | AT5G20830.1 | 50.271 | 553 | 255 | 4 | 7 | 543 | 8 | 556 | 0.0 | 553 |
| Msa0815520 | AT5G49190.3 | 54.938 | 486 | 203 | 2 | 73 | 543 | 3 | 487 | 0.0 | 551 |
| Msa0815520 | AT3G43190.2 | 49.639 | 554 | 259 | 4 | 6 | 543 | 7 | 556 | 0.0 | 546 |
| Msa0815520 | AT3G43190.1 | 49.639 | 554 | 259 | 4 | 6 | 543 | 7 | 556 | 0.0 | 546 |
| Msa0815520 | AT5G37180.3 | 71.340 | 321 | 75 | 2 | 255 | 560 | 1 | 319 | 9.03e-164 | 479 |
Find 179 sgRNAs with CRISPR-Local
Find 360 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCAGTTCATGGTTATTT+TGG | 0.070641 | 5_3:+49142403 | Msa0815520:CDS |
| TGCAAACAAGTTGGTAAATA+TGG | 0.130999 | 5_3:+49145201 | Msa0815520:three_prime_UTR |
| TTCCATTAGGTCCAAAATTT+TGG | 0.135688 | 5_3:-49143333 | None:intergenic |
| TAATTTCTTATTCAAGAATT+TGG | 0.152548 | 5_3:+49145300 | Msa0815520:three_prime_UTR |
| GGATGCAACAACCAAAATTT+TGG | 0.164817 | 5_3:+49143322 | Msa0815520:intron |
| GAAGAAGACAAGGTTAATTT+AGG | 0.178184 | 5_3:-49141658 | None:intergenic |
| GGCCTATGTAGAGTTGTTTC+TGG | 0.186575 | 5_3:+49143860 | Msa0815520:CDS |
| GGTTATTACTTGGATCTTAA+TGG | 0.206980 | 5_3:+49146142 | Msa0815520:intron |
| CTTGCCATCGAGAAGATTAT+TGG | 0.212816 | 5_3:-49144483 | None:intergenic |
| GACTTTGGAGCATTTGATAT+TGG | 0.226670 | 5_3:+49141631 | Msa0815520:CDS |
| TGACATGAGAAGTGATATTT+AGG | 0.235805 | 5_3:-49143605 | None:intergenic |
| AAATTACACGGATGGAAATT+TGG | 0.236852 | 5_3:+49143379 | Msa0815520:CDS |
| CAAACCTTCCAGCAATTTCT+TGG | 0.245784 | 5_3:-49143685 | None:intergenic |
| TGTATAACCTTCTTATATAT+TGG | 0.247172 | 5_3:+49146234 | Msa0815520:three_prime_UTR |
| TTCAAGGACAACTGGGAAAT+TGG | 0.253007 | 5_3:+49141720 | Msa0815520:CDS |
| GGGAAGCCAGATCTTGTTAT+TGG | 0.282391 | 5_3:+49143356 | Msa0815520:CDS |
| TGGGGAACACTTACACCTTT+TGG | 0.282985 | 5_3:+49145221 | Msa0815520:three_prime_UTR |
| TTTGCTAAGTACCTAGAAAA+AGG | 0.296994 | 5_3:+49140630 | Msa0815520:CDS |
| CATGCTGCATTTACTCTTCC+AGG | 0.298265 | 5_3:+49143839 | Msa0815520:CDS |
| CATATGTAGCCTTTGCAATT+AGG | 0.299383 | 5_3:+49141023 | Msa0815520:CDS |
| GGTTGCTTGTCAACTGGTTT+TGG | 0.303052 | 5_3:-49145467 | None:intergenic |
| ATCACTACTTTGAATATTGT+TGG | 0.304732 | 5_3:-49142379 | None:intergenic |
| CATGAAACTTCATGAATTAA+TGG | 0.308219 | 5_3:+49140662 | Msa0815520:CDS |
| ACTTTGGAGCATTTGATATT+GGG | 0.313644 | 5_3:+49141632 | Msa0815520:CDS |
| TTAACCTTGTCTTCTTCAAT+TGG | 0.317572 | 5_3:+49141664 | Msa0815520:CDS |
| TTCTTAACTTCAAGGACAAC+TGG | 0.323354 | 5_3:+49141712 | Msa0815520:CDS |
| TTGTCTTCTTCAATTGGAAA+TGG | 0.326217 | 5_3:+49141670 | Msa0815520:CDS |
| CACACTTTCAGGTTATTACT+TGG | 0.335978 | 5_3:+49146132 | Msa0815520:intron |
| CCTGCTTTGTATGAAGCATT+TGG | 0.338153 | 5_3:+49144780 | Msa0815520:three_prime_UTR |
| TTTGGGCAAGCAGATGTTCT+TGG | 0.338987 | 5_3:+49142421 | Msa0815520:CDS |
| TTAGGCCTAATCCAGGAGTT+TGG | 0.342965 | 5_3:+49141041 | Msa0815520:CDS |
| ATACCCTTTCCTTGAATTTG+AGG | 0.348077 | 5_3:-49141123 | None:intergenic |
| AAATGAAAGAAATTATGTTT+TGG | 0.349393 | 5_3:+49140713 | Msa0815520:CDS |
| GTAGTGATCTTCTCAGTTCA+TGG | 0.349932 | 5_3:+49142394 | Msa0815520:CDS |
| TATCTCTTAATTTCTTTCAA+TGG | 0.354240 | 5_3:+49140518 | Msa0815520:exon |
| TTTCAAAGTTCTTAACTTCA+AGG | 0.358243 | 5_3:+49141704 | Msa0815520:CDS |
| ACAACAGGTAGTTTACATAT+TGG | 0.359818 | 5_3:+49142751 | Msa0815520:intron |
| GCAAAGTAGACCCATCATAT+TGG | 0.374838 | 5_3:+49144961 | Msa0815520:three_prime_UTR |
| TAGGCCTAATCCAGGAGTTT+GGG | 0.383197 | 5_3:+49141042 | Msa0815520:CDS |
| ATCAAAAGATAGAGAGGAAA+TGG | 0.388957 | 5_3:+49144617 | Msa0815520:three_prime_UTR |
| GGAGGTTCATCACTTGGAAT+AGG | 0.389482 | 5_3:-49145446 | None:intergenic |
| ATAAGAAATTATAGAACATA+TGG | 0.396630 | 5_3:-49145288 | None:intergenic |
| GCAAACAAGTTGGTAAATAT+GGG | 0.397058 | 5_3:+49145202 | Msa0815520:three_prime_UTR |
| AGCAATTTCTTGGTATGTAC+TGG | 0.397249 | 5_3:-49143675 | None:intergenic |
| TCACTTCTCATGTCAATTCA+TGG | 0.397520 | 5_3:+49143613 | Msa0815520:CDS |
| ATTTCCAGGTTCACTGGATC+CGG | 0.402834 | 5_3:-49142340 | None:intergenic |
| TCACTAATGGCTAGAAAACT+TGG | 0.405015 | 5_3:+49143407 | Msa0815520:CDS |
| TTCATTTATGCGCTGCAATC+CGG | 0.411646 | 5_3:-49145000 | None:intergenic |
| CAATTTCATTTCCAGGTTGA+AGG | 0.411773 | 5_3:+49142234 | Msa0815520:intron |
| CAATGCATCAGGCATGTTAT+CGG | 0.417559 | 5_3:-49140577 | None:intergenic |
| TAGCAAAGCACTTCTTCATA+TGG | 0.418506 | 5_3:-49140614 | None:intergenic |
| CAATGTGGATTGTGAACGTT+TGG | 0.418580 | 5_3:-49146029 | None:intergenic |
| ATAATTGTTGATGGTGTCTC+AGG | 0.422446 | 5_3:+49144873 | Msa0815520:three_prime_UTR |
| TTTACCTGGCCACCAGTGTC+TGG | 0.422921 | 5_3:-49142448 | None:intergenic |
| GATCTGGCTTCCCTTCCATT+AGG | 0.423211 | 5_3:-49143346 | None:intergenic |
| TATTCCCAAACTCCTGGATT+AGG | 0.426827 | 5_3:-49141046 | None:intergenic |
| TAATTTCCAATAACAAGATC+TGG | 0.431825 | 5_3:-49143362 | None:intergenic |
| ACGTAGAATGTGAGAGTGTT+TGG | 0.432164 | 5_3:-49143007 | None:intergenic |
| TGTTATCTACTTTGTTAAAG+AGG | 0.432624 | 5_3:-49144003 | None:intergenic |
| GAAATCACGTTCCAATATGA+TGG | 0.435511 | 5_3:-49144972 | None:intergenic |
| AGAGTTGGTTGCTTGTCAAC+TGG | 0.437105 | 5_3:-49145473 | None:intergenic |
| CTACTCTGCTTCAATGCATC+AGG | 0.439087 | 5_3:-49140588 | None:intergenic |
| AAATTTGGTGGCATCACTAA+TGG | 0.439094 | 5_3:+49143394 | Msa0815520:CDS |
| AGATAATGCAGGAAGGGTGA+AGG | 0.439483 | 5_3:+49142282 | Msa0815520:CDS |
| ACTTAAGCGGGTTAGTTGAA+TGG | 0.440702 | 5_3:+49144523 | Msa0815520:three_prime_UTR |
| TACAGATTACCTCAAATTCA+AGG | 0.443444 | 5_3:+49141114 | Msa0815520:CDS |
| GCCTATGTAGAGTTGTTTCT+GGG | 0.445424 | 5_3:+49143861 | Msa0815520:CDS |
| CGATGCATTGCTGACTCAAA+GGG | 0.446727 | 5_3:+49144744 | Msa0815520:three_prime_UTR |
| TAAAGAATTTGTCCGCTTCA+AGG | 0.446932 | 5_3:-49140553 | None:intergenic |
| ATTCCTTTCTCTGTATGAAA+AGG | 0.447223 | 5_3:-49143033 | None:intergenic |
| AATGCATTTGAAGCAGACTT+TGG | 0.448056 | 5_3:+49141616 | Msa0815520:CDS |
| CCATCAACAATTATTTCTGC+TGG | 0.448191 | 5_3:-49144864 | None:intergenic |
| AGACTCACCACAAGAATTTG+AGG | 0.449816 | 5_3:-49142839 | None:intergenic |
| GGTTCACTGGATCCGGAGCT+TGG | 0.456620 | 5_3:-49142333 | None:intergenic |
| CATTTCCAGGTTGAAGGAGT+GGG | 0.459088 | 5_3:+49142240 | Msa0815520:intron |
| CCTCTTCCAACGCCTTGACT+TGG | 0.461405 | 5_3:-49142775 | None:intergenic |
| CTTGCCAGACACTGGTGGCC+AGG | 0.463571 | 5_3:+49142444 | Msa0815520:CDS |
| TTTGTTAACTTGCTTCCAAA+AGG | 0.466022 | 5_3:-49145236 | None:intergenic |
| GTGAACCTTGTCATAGTTGG+TGG | 0.468895 | 5_3:+49144576 | Msa0815520:three_prime_UTR |
| CACTTAGTTCCTCTAGCATC+AGG | 0.468958 | 5_3:-49142955 | None:intergenic |
| CATTGATTGGTTCAAACTCC+TGG | 0.474899 | 5_3:-49142981 | None:intergenic |
| GAGTGTTTGGTATCATTGAT+TGG | 0.478819 | 5_3:-49142994 | None:intergenic |
| GTCCGCTTCAAGGTATGTGT+TGG | 0.479582 | 5_3:-49140543 | None:intergenic |
| TGAATTTGAGGTAATCTGTA+GGG | 0.481492 | 5_3:-49141111 | None:intergenic |
| CCAAGTCAAGGCGTTGGAAG+AGG | 0.483522 | 5_3:+49142775 | Msa0815520:CDS |
| GAAAGGAATCTTGCGCCAAT+GGG | 0.483913 | 5_3:+49143047 | Msa0815520:CDS |
| GTTCACAATCCACATTGAAA+AGG | 0.484065 | 5_3:+49146035 | Msa0815520:three_prime_UTR |
| AAGAGGAGATCTTCAATAGC+AGG | 0.484163 | 5_3:-49143986 | None:intergenic |
| AGAAAGGAATCTTGCGCCAA+TGG | 0.485834 | 5_3:+49143046 | Msa0815520:CDS |
| AGTACATACCAAGAAATTGC+TGG | 0.486522 | 5_3:+49143677 | Msa0815520:CDS |
| AAAGGATGGGGAGATAATGC+AGG | 0.486672 | 5_3:+49142271 | Msa0815520:CDS |
| CCAGCAGAAATAATTGTTGA+TGG | 0.490757 | 5_3:+49144864 | Msa0815520:three_prime_UTR |
| ATGAAGACTCAGATGTTAAG+TGG | 0.491444 | 5_3:+49143570 | Msa0815520:CDS |
| CTAATTGCAAAGGCTACATA+TGG | 0.497187 | 5_3:-49141022 | None:intergenic |
| AGGTGAAGCTATATTGAACT+TGG | 0.506881 | 5_3:-49143900 | None:intergenic |
| GAGCCTTGTTGTTTGAGAGT+TGG | 0.508078 | 5_3:-49145488 | None:intergenic |
| GCATGGCTTTCATACTGTCC+AGG | 0.512596 | 5_3:-49143821 | None:intergenic |
| CTTGATTCATCTCCATTGAG+AGG | 0.513096 | 5_3:-49144909 | None:intergenic |
| AGCGGGTTAGTTGAATGGTA+TGG | 0.513516 | 5_3:+49144528 | Msa0815520:three_prime_UTR |
| ATTTCCAGGTTGAAGGAGTG+GGG | 0.515424 | 5_3:+49142241 | Msa0815520:intron |
| TTACCTCAAATTCAAGGAAA+GGG | 0.515471 | 5_3:+49141120 | Msa0815520:CDS |
| GTTCTTGGCTTGCCAGACAC+TGG | 0.515609 | 5_3:+49142436 | Msa0815520:CDS |
| TTGAATTTGAGGTAATCTGT+AGG | 0.516962 | 5_3:-49141112 | None:intergenic |
| TGTACTGGTTATGATGAAAT+CGG | 0.521627 | 5_3:-49143660 | None:intergenic |
| ATCAGAAGTACTCCAAGCTC+CGG | 0.522664 | 5_3:+49142321 | Msa0815520:CDS |
| GTTATTGGAAATTACACGGA+TGG | 0.522848 | 5_3:+49143371 | Msa0815520:CDS |
| TGTACATATTCCCAAACTCC+TGG | 0.522879 | 5_3:-49141052 | None:intergenic |
| AGCTCCGGATCCAGTGAACC+TGG | 0.523112 | 5_3:+49142336 | Msa0815520:CDS |
| TTCCACATTGATCCTCTCAA+TGG | 0.523550 | 5_3:+49144897 | Msa0815520:three_prime_UTR |
| GGCAAAAGCACAGACTATAG+TGG | 0.530206 | 5_3:+49141741 | Msa0815520:CDS |
| CCTTGATTAGTAGCAAAAGT+TGG | 0.536164 | 5_3:-49144837 | None:intergenic |
| ATTACCTCAAATTCAAGGAA+AGG | 0.536681 | 5_3:+49141119 | Msa0815520:CDS |
| TTGGTGAACCTTGTCATAGT+TGG | 0.540805 | 5_3:+49144573 | Msa0815520:three_prime_UTR |
| CTCGGCTGCAAAGCTTCAGA+TGG | 0.543389 | 5_3:+49141927 | Msa0815520:CDS |
| TCGATGCATTGCTGACTCAA+AGG | 0.544831 | 5_3:+49144743 | Msa0815520:three_prime_UTR |
| GAAACAACTCTACATAGGCC+TGG | 0.545252 | 5_3:-49143857 | None:intergenic |
| CTCTCAAACAACAAGGCTCT+AGG | 0.545501 | 5_3:+49145492 | Msa0815520:three_prime_UTR |
| GAAGATATATGCAAACAAGT+TGG | 0.545929 | 5_3:+49145192 | Msa0815520:three_prime_UTR |
| TTATAAACCAATATATAAGA+AGG | 0.546347 | 5_3:-49146241 | None:intergenic |
| ATGTTGTGAAGAACTTAAGC+GGG | 0.548780 | 5_3:+49144511 | Msa0815520:exon |
| TCATGAATTAATGGAAGAAG+TGG | 0.551105 | 5_3:+49140671 | Msa0815520:CDS |
| CTTAACATTGACAGGTAACA+AGG | 0.552130 | 5_3:+49142926 | Msa0815520:intron |
| TTCAAAATCAAAAGATAGAG+AGG | 0.553369 | 5_3:+49144611 | Msa0815520:three_prime_UTR |
| CTTGGCTTGCCAGACACTGG+TGG | 0.554446 | 5_3:+49142439 | Msa0815520:CDS |
| TTTCCAGGTTGAAGGAGTGG+GGG | 0.558404 | 5_3:+49142242 | Msa0815520:intron |
| TATAAACTCAGAAATAATGA+TGG | 0.559092 | 5_3:-49140468 | None:intergenic |
| TTGTTGAAACTAAATCATCA+TGG | 0.559548 | 5_3:+49141769 | Msa0815520:CDS |
| AACTAAAGGGACAATTCAGA+TGG | 0.563580 | 5_3:+49144679 | Msa0815520:three_prime_UTR |
| TCATTTCCAGGTTGAAGGAG+TGG | 0.564746 | 5_3:+49142239 | Msa0815520:intron |
| TTTGCAATTAGGCCTAATCC+AGG | 0.566483 | 5_3:+49141034 | Msa0815520:CDS |
| CAATAATCTTCTCGATGGCA+AGG | 0.566855 | 5_3:+49144484 | Msa0815520:CDS |
| CACTAATGGCTAGAAAACTT+GGG | 0.568038 | 5_3:+49143408 | Msa0815520:CDS |
| GATAAATGACACGTTGAGCT+CGG | 0.568356 | 5_3:+49141909 | Msa0815520:CDS |
| ATTGCAAAGGCTACATATGG+TGG | 0.571806 | 5_3:-49141019 | None:intergenic |
| CCAAATGCTTCATACAAAGC+AGG | 0.573499 | 5_3:-49144780 | None:intergenic |
| GATTGCAGCGCATAAATGAA+TGG | 0.573820 | 5_3:+49145003 | Msa0815520:three_prime_UTR |
| CTTTATATTGAGCTCTACAC+AGG | 0.580216 | 5_3:+49140749 | Msa0815520:CDS |
| GTGGATATCTAGCAGAGAAG+AGG | 0.585549 | 5_3:+49144457 | Msa0815520:intron |
| TCTTAACTTCAAGGACAACT+GGG | 0.587344 | 5_3:+49141713 | Msa0815520:CDS |
| ATTGGACCAAGTCAAGGCGT+TGG | 0.587374 | 5_3:+49142769 | Msa0815520:CDS |
| TGGAACGTGATTTCTGCGGC+CGG | 0.591424 | 5_3:+49144981 | Msa0815520:three_prime_UTR |
| ATGGGGAGATAATGCAGGAA+GGG | 0.592050 | 5_3:+49142276 | Msa0815520:CDS |
| AAATCACGTTCCAATATGAT+GGG | 0.592482 | 5_3:-49144971 | None:intergenic |
| GAAACCAATAATCTTCTCGA+TGG | 0.592864 | 5_3:+49144479 | Msa0815520:CDS |
| TTACACGGATGGAAATTTGG+TGG | 0.593594 | 5_3:+49143382 | Msa0815520:CDS |
| GAACAAGAGACTAAGAAACT+TGG | 0.594567 | 5_3:+49144554 | Msa0815520:three_prime_UTR |
| TCTTGTTATTGGAAATTACA+CGG | 0.599171 | 5_3:+49143367 | Msa0815520:CDS |
| TTACATATTGGACCAAGTCA+AGG | 0.599602 | 5_3:+49142763 | Msa0815520:CDS |
| CTCTGATGACCTCTCTGTTG+AGG | 0.599793 | 5_3:+49141081 | Msa0815520:CDS |
| GATGGGGAGATAATGCAGGA+AGG | 0.601426 | 5_3:+49142275 | Msa0815520:CDS |
| GAATTTGAGGTAATCTGTAG+GGG | 0.605766 | 5_3:-49141110 | None:intergenic |
| TAGAAAACTTGGGATAACTC+AGG | 0.607985 | 5_3:+49143418 | Msa0815520:CDS |
| TAGAGGAACTAAGTGCCACC+AGG | 0.609338 | 5_3:+49142963 | Msa0815520:CDS |
| CAAACAAGTTGGTAAATATG+GGG | 0.611526 | 5_3:+49145203 | Msa0815520:three_prime_UTR |
| TGGATTAGGCCTAATTGCAA+AGG | 0.614592 | 5_3:-49141032 | None:intergenic |
| ATTTCCAATTGAAGAAGACA+AGG | 0.616302 | 5_3:-49141668 | None:intergenic |
| GGTGAAGCTATATTGAACTT+GGG | 0.621197 | 5_3:-49143899 | None:intergenic |
| GATGTTGTGAAGAACTTAAG+CGG | 0.622437 | 5_3:+49144510 | Msa0815520:exon |
| AGTTAACAAAGAGCAAAATG+AGG | 0.623039 | 5_3:+49145249 | Msa0815520:three_prime_UTR |
| TGAATAAAATGATGTGTCTG+AGG | 0.626455 | 5_3:+49146329 | Msa0815520:three_prime_UTR |
| CAACCAACTCTCAAACAACA+AGG | 0.628977 | 5_3:+49145485 | Msa0815520:three_prime_UTR |
| AGAGGAGATCTTCAATAGCA+GGG | 0.629949 | 5_3:-49143985 | None:intergenic |
| TCCCAGAAACAACTCTACAT+AGG | 0.630829 | 5_3:-49143862 | None:intergenic |
| CTCCAACACATACCTTGAAG+CGG | 0.632080 | 5_3:+49140541 | Msa0815520:CDS |
| AAGTTCAATATAGCTTCACC+TGG | 0.636766 | 5_3:+49143902 | Msa0815520:CDS |
| TAGATACTTTGATCAGCACC+AGG | 0.643107 | 5_3:-49143920 | None:intergenic |
| CTGGAAGAGTAAATGCAGCA+TGG | 0.646190 | 5_3:-49143838 | None:intergenic |
| TGATTGGTTCAAACTCCTGG+TGG | 0.652035 | 5_3:-49142978 | None:intergenic |
| CATACCAAGAAATTGCTGGA+AGG | 0.653894 | 5_3:+49143681 | Msa0815520:CDS |
| AAGAAGGTTATACACATCAG+AGG | 0.660670 | 5_3:-49146225 | None:intergenic |
| AAGGTTATACACATCAGAGG+AGG | 0.675638 | 5_3:-49146222 | None:intergenic |
| ATTCTACGAATTAAGCAACA+AGG | 0.684544 | 5_3:+49142803 | Msa0815520:CDS |
| CTCCATTGAGAGGATCAATG+TGG | 0.693616 | 5_3:-49144899 | None:intergenic |
| GTCATTGAAGCAATGAACTG+TGG | 0.697770 | 5_3:+49144810 | Msa0815520:three_prime_UTR |
| CAGACTGATCGATATCGCAA+CGG | 0.702884 | 5_3:+49144711 | Msa0815520:three_prime_UTR |
| ATATTGGAACGTGATTTCTG+CGG | 0.707520 | 5_3:+49144977 | Msa0815520:three_prime_UTR |
| GGGTGATAGCCTCAACAGAG+AGG | 0.711630 | 5_3:-49141090 | None:intergenic |
| AGAAGCCACCAACTATGACA+AGG | 0.713700 | 5_3:-49144581 | None:intergenic |
| AGGTTGATACCTGATGCTAG+AGG | 0.743701 | 5_3:+49142946 | Msa0815520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAATATTAATAAATGAA+AGG | - | chr5_3:49143720-49143739 | None:intergenic | 10.0% |
| !! | ACAGTAAAAAAAATATTAAA+GGG | - | chr5_3:49145078-49145097 | None:intergenic | 10.0% |
| !! | AACAGTAAAAAAAATATTAA+AGG | - | chr5_3:49145079-49145098 | None:intergenic | 10.0% |
| !!! | AAATGAAAGAAATTATGTTT+TGG | + | chr5_3:49140713-49140732 | Msa0815520:CDS | 15.0% |
| !!! | CTTTTTATATTTTGTCTAAT+AGG | + | chr5_3:49140774-49140793 | Msa0815520:intron | 15.0% |
| !!! | GTATATTTAATTTTAAGTCT+TGG | + | chr5_3:49141184-49141203 | Msa0815520:intron | 15.0% |
| !!! | TTAACATTTTCTATATTGTA+GGG | + | chr5_3:49141582-49141601 | Msa0815520:intron | 15.0% |
| !! | TTATTAATTGTCTATTAAAG+AGG | + | chr5_3:49142029-49142048 | Msa0815520:intron | 15.0% |
| !! | AATATTGAAAGAAAAACTAA+AGG | - | chr5_3:49143462-49143481 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTCAATATTTTTG+TGG | + | chr5_3:49143466-49143485 | Msa0815520:intron | 15.0% |
| !!! | ATTCACTTTTGAAATTATTA+TGG | + | chr5_3:49144429-49144448 | Msa0815520:intron | 15.0% |
| !! | ATAAGAAATTATAGAACATA+TGG | - | chr5_3:49145291-49145310 | None:intergenic | 15.0% |
| !! | TAATTTCTTATTCAAGAATT+TGG | + | chr5_3:49145300-49145319 | Msa0815520:three_prime_UTR | 15.0% |
| !! | CAAATAAGAAAATATTGTTT+CGG | + | chr5_3:49145571-49145590 | Msa0815520:intron | 15.0% |
| !! | TGTTAAATACATATTTAAGT+TGG | + | chr5_3:49145886-49145905 | Msa0815520:intron | 15.0% |
| !! | ACAAAAATAGAAAGAATTTA+CGG | - | chr5_3:49145913-49145932 | None:intergenic | 15.0% |
| !! | TTATAAACCAATATATAAGA+AGG | - | chr5_3:49146244-49146263 | None:intergenic | 15.0% |
| !! | TATAAACTCAGAAATAATGA+TGG | - | chr5_3:49140471-49140490 | None:intergenic | 20.0% |
| !! | TATCTCTTAATTTCTTTCAA+TGG | + | chr5_3:49140518-49140537 | Msa0815520:exon | 20.0% |
| !!! | TTTTTTATTACTCAATGTGT+TGG | - | chr5_3:49140905-49140924 | None:intergenic | 20.0% |
| !!! | CTTAACATTTTCTATATTGT+AGG | + | chr5_3:49141581-49141600 | Msa0815520:intron | 20.0% |
| !!! | TTTTGATATGAAGTATCTTT+TGG | - | chr5_3:49141988-49142007 | None:intergenic | 20.0% |
| !! | AACATAGCTAAAAACAAATT+TGG | - | chr5_3:49142055-49142074 | None:intergenic | 20.0% |
| !! | ATTAAAATTAATGTTCCTCA+TGG | - | chr5_3:49142481-49142500 | None:intergenic | 20.0% |
| !! | TATAAGTATCAAGTAGTATA+AGG | + | chr5_3:49142501-49142520 | Msa0815520:intron | 20.0% |
| !!! | ATACTTTGGTTGATATTAAT+AGG | + | chr5_3:49143301-49143320 | Msa0815520:intron | 20.0% |
| !!! | AAACTTTTAAAATTTTCGCT+TGG | - | chr5_3:49144367-49144386 | None:intergenic | 20.0% |
| !! | AATTGAAAAACATCAACTAA+AGG | + | chr5_3:49144665-49144684 | Msa0815520:three_prime_UTR | 20.0% |
| !! | ATTGAAAAACATCAACTAAA+GGG | + | chr5_3:49144666-49144685 | Msa0815520:three_prime_UTR | 20.0% |
| !!! | ATTAAAGGGTCTTATAAAAA+TGG | - | chr5_3:49145064-49145083 | None:intergenic | 20.0% |
| !!! | AAAATTAATTTTCTTGCTGA+TGG | - | chr5_3:49145136-49145155 | None:intergenic | 20.0% |
| !!! | ATTTTGTTTTAGAATTTGAG+AGG | + | chr5_3:49145529-49145548 | Msa0815520:intron | 20.0% |
| !! | AGATATGATTTACCATATAA+AGG | - | chr5_3:49145655-49145674 | None:intergenic | 20.0% |
| !!! | CATTTTTCTCTCATTATTAT+CGG | - | chr5_3:49145804-49145823 | None:intergenic | 20.0% |
| !!! | TAAATTTAACCTTTTCAATG+TGG | - | chr5_3:49146047-49146066 | None:intergenic | 20.0% |
| !! | TGTATAACCTTCTTATATAT+TGG | + | chr5_3:49146234-49146253 | Msa0815520:three_prime_UTR | 20.0% |
| ! | CATGAAACTTCATGAATTAA+TGG | + | chr5_3:49140662-49140681 | Msa0815520:CDS | 25.0% |
| !!! | TGAAAGAAATTATGTTTTGG+AGG | + | chr5_3:49140716-49140735 | Msa0815520:CDS | 25.0% |
| !!! | GAAAGAAATTATGTTTTGGA+GGG | + | chr5_3:49140717-49140736 | Msa0815520:CDS | 25.0% |
| !!! | TAGTTTGTTACATATGTATG+AGG | - | chr5_3:49140943-49140962 | None:intergenic | 25.0% |
| !!! | TTAGCCTTTGAATTTTAATG+TGG | + | chr5_3:49140964-49140983 | Msa0815520:intron | 25.0% |
| ! | GAGATAAAAAACACATTACT+TGG | + | chr5_3:49141446-49141465 | Msa0815520:intron | 25.0% |
| ! | TTTCAAAGTTCTTAACTTCA+AGG | + | chr5_3:49141704-49141723 | Msa0815520:CDS | 25.0% |
| ! | TTGTTGAAACTAAATCATCA+TGG | + | chr5_3:49141769-49141788 | Msa0815520:CDS | 25.0% |
| ! | AAAGAATATGTAACTGTTGT+TGG | - | chr5_3:49141842-49141861 | None:intergenic | 25.0% |
| ! | CATATCAAAAATTTGAGCTA+AGG | + | chr5_3:49141998-49142017 | Msa0815520:CDS | 25.0% |
| ! | ATCACTACTTTGAATATTGT+TGG | - | chr5_3:49142382-49142401 | None:intergenic | 25.0% |
| !!! | TAGTATAAGGTTTTAAATCG+CGG | + | chr5_3:49142514-49142533 | Msa0815520:intron | 25.0% |
| ! | GTTAGAAAGGAAAACAAATT+TGG | - | chr5_3:49142717-49142736 | None:intergenic | 25.0% |
| !! | TTTTAAACCTCAAATTCTTG+TGG | + | chr5_3:49142832-49142851 | Msa0815520:CDS | 25.0% |
| ! | TAATTTCCAATAACAAGATC+TGG | - | chr5_3:49143365-49143384 | None:intergenic | 25.0% |
| !!! | TCTTGTTATTGGAAATTACA+CGG | + | chr5_3:49143367-49143386 | Msa0815520:CDS | 25.0% |
| ! | TGTACTTGTGATTGAAAATT+AGG | + | chr5_3:49143514-49143533 | Msa0815520:intron | 25.0% |
| !! | TTTTGTCTTTTTCTGTGTAA+GGG | - | chr5_3:49143949-49143968 | None:intergenic | 25.0% |
| ! | TGTTATCTACTTTGTTAAAG+AGG | - | chr5_3:49144006-49144025 | None:intergenic | 25.0% |
| ! | TGAAATTATTATGGAAACAG+TGG | + | chr5_3:49144438-49144457 | Msa0815520:intron | 25.0% |
| !!! | CTCTATCTTTTGATTTTGAA+GGG | - | chr5_3:49144611-49144630 | None:intergenic | 25.0% |
| !!! | TCTCTATCTTTTGATTTTGA+AGG | - | chr5_3:49144612-49144631 | None:intergenic | 25.0% |
| ! | TTCAAAATCAAAAGATAGAG+AGG | + | chr5_3:49144611-49144630 | Msa0815520:three_prime_UTR | 25.0% |
| ! | AAAACTCACTATGCAATAAT+TGG | - | chr5_3:49145366-49145385 | None:intergenic | 25.0% |
| ! | GAATAATCTCAACCTTTATA+TGG | + | chr5_3:49145640-49145659 | Msa0815520:intron | 25.0% |
| ! | CGAATGTATATAGTCTAATT+TGG | - | chr5_3:49145703-49145722 | None:intergenic | 25.0% |
| ! | AGAGACACATAATTCTTATA+AGG | - | chr5_3:49145739-49145758 | None:intergenic | 25.0% |
| ! | TTATAAGAATTATGTGTCTC+TGG | + | chr5_3:49145738-49145757 | Msa0815520:intron | 25.0% |
| ! | TGTTAGCATGAAAAATCAAA+TGG | - | chr5_3:49145972-49145991 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTCCTTTTCTTCT+TGG | + | chr5_3:49145997-49146016 | Msa0815520:intron | 25.0% |
| !!! | TGCAAGTGTTTTTTTTAGTA+AGG | - | chr5_3:49146114-49146133 | None:intergenic | 25.0% |
| TTTGCTAAGTACCTAGAAAA+AGG | + | chr5_3:49140630-49140649 | Msa0815520:CDS | 30.0% | |
| TTGCTAAGTACCTAGAAAAA+GGG | + | chr5_3:49140631-49140650 | Msa0815520:CDS | 30.0% | |
| TCATGAATTAATGGAAGAAG+TGG | + | chr5_3:49140671-49140690 | Msa0815520:CDS | 30.0% | |
| TGCACCACATTAAAATTCAA+AGG | - | chr5_3:49140971-49140990 | None:intergenic | 30.0% | |
| ! | TGAATTTGAGGTAATCTGTA+GGG | - | chr5_3:49141114-49141133 | None:intergenic | 30.0% |
| ! | TTGAATTTGAGGTAATCTGT+AGG | - | chr5_3:49141115-49141134 | None:intergenic | 30.0% |
| TACAGATTACCTCAAATTCA+AGG | + | chr5_3:49141114-49141133 | Msa0815520:CDS | 30.0% | |
| ATTACCTCAAATTCAAGGAA+AGG | + | chr5_3:49141119-49141138 | Msa0815520:CDS | 30.0% | |
| TTACCTCAAATTCAAGGAAA+GGG | + | chr5_3:49141120-49141139 | Msa0815520:CDS | 30.0% | |
| ! | AAAGGGTATATGACCAAAAA+TGG | + | chr5_3:49141137-49141156 | Msa0815520:CDS | 30.0% |
| TTGTTTGAGCATCTTATGTA+AGG | + | chr5_3:49141216-49141235 | Msa0815520:intron | 30.0% | |
| GTTAAGTGAATCTATCTTCT+TGG | - | chr5_3:49141548-49141567 | None:intergenic | 30.0% | |
| !! | ACTTTGGAGCATTTGATATT+GGG | + | chr5_3:49141632-49141651 | Msa0815520:CDS | 30.0% |
| GAAGAAGACAAGGTTAATTT+AGG | - | chr5_3:49141661-49141680 | None:intergenic | 30.0% | |
| TTAACCTTGTCTTCTTCAAT+TGG | + | chr5_3:49141664-49141683 | Msa0815520:CDS | 30.0% | |
| ATTTCCAATTGAAGAAGACA+AGG | - | chr5_3:49141671-49141690 | None:intergenic | 30.0% | |
| TTGTCTTCTTCAATTGGAAA+TGG | + | chr5_3:49141670-49141689 | Msa0815520:CDS | 30.0% | |
| TACAATTCTTCGCAATATCA+AGG | - | chr5_3:49142101-49142120 | None:intergenic | 30.0% | |
| ACATAAGATTGTTTATGTCG+CGG | - | chr5_3:49142150-49142169 | None:intergenic | 30.0% | |
| AATGTCTGTGATCAAAATTC+AGG | - | chr5_3:49142178-49142197 | None:intergenic | 30.0% | |
| TGGAAATGAAATTGGCATTA+GGG | - | chr5_3:49142228-49142247 | None:intergenic | 30.0% | |
| AAAAATATTTCCAGGTTCAC+TGG | - | chr5_3:49142349-49142368 | None:intergenic | 30.0% | |
| TTCTGCTGAAAAATATTTCC+AGG | - | chr5_3:49142357-49142376 | None:intergenic | 30.0% | |
| ! | TTCTCAGTTCATGGTTATTT+TGG | + | chr5_3:49142403-49142422 | Msa0815520:CDS | 30.0% |
| !! | TCTCAGTTCATGGTTATTTT+GGG | + | chr5_3:49142404-49142423 | Msa0815520:CDS | 30.0% |
| TGCATTGTGATTCTAAACAT+TGG | + | chr5_3:49142558-49142577 | Msa0815520:intron | 30.0% | |
| ! | TTTTGCAACAAGTGTTAGAA+AGG | - | chr5_3:49142730-49142749 | None:intergenic | 30.0% |
| ACAACAGGTAGTTTACATAT+TGG | + | chr5_3:49142751-49142770 | Msa0815520:intron | 30.0% | |
| ATTCTACGAATTAAGCAACA+AGG | + | chr5_3:49142803-49142822 | Msa0815520:CDS | 30.0% | |
| ! | TCTAAGTTTCAAGTAGAAAG+AGG | - | chr5_3:49142880-49142899 | None:intergenic | 30.0% |
| ATTCCTTTCTCTGTATGAAA+AGG | - | chr5_3:49143036-49143055 | None:intergenic | 30.0% | |
| TACTGTAAGATAAAAGTTCG+CGG | - | chr5_3:49143195-49143214 | None:intergenic | 30.0% | |
| !! | CAAAGAATAGTTCTAAACAG+CGG | - | chr5_3:49143245-49143264 | None:intergenic | 30.0% |
| TTTCCTTCTTACGAATACTT+TGG | + | chr5_3:49143287-49143306 | Msa0815520:intron | 30.0% | |
| ! | AACCAAAATTTTGGACCTAA+TGG | + | chr5_3:49143331-49143350 | Msa0815520:CDS | 30.0% |
| ! | TTCCATTAGGTCCAAAATTT+TGG | - | chr5_3:49143336-49143355 | None:intergenic | 30.0% |
| ! | AAAATTTTGGACCTAATGGA+AGG | + | chr5_3:49143335-49143354 | Msa0815520:CDS | 30.0% |
| ! | AAATTTTGGACCTAATGGAA+GGG | + | chr5_3:49143336-49143355 | Msa0815520:CDS | 30.0% |
| AAATTACACGGATGGAAATT+TGG | + | chr5_3:49143379-49143398 | Msa0815520:CDS | 30.0% | |
| !! | TCAATATTTTTGTGGCTGAA+AGG | + | chr5_3:49143474-49143493 | Msa0815520:intron | 30.0% |
| TGACATGAGAAGTGATATTT+AGG | - | chr5_3:49143608-49143627 | None:intergenic | 30.0% | |
| !! | TGTACTGGTTATGATGAAAT+CGG | - | chr5_3:49143663-49143682 | None:intergenic | 30.0% |
| ! | CTTTTGTCTTTTTCTGTGTA+AGG | - | chr5_3:49143950-49143969 | None:intergenic | 30.0% |
| AAAGGTTTAATGTGCAAATG+TGG | - | chr5_3:49144055-49144074 | None:intergenic | 30.0% | |
| ! | AGATGAGTCTTTTAACAGAA+AGG | - | chr5_3:49144073-49144092 | None:intergenic | 30.0% |
| ! | ATACCGTCTAAAATTTGAGT+TGG | - | chr5_3:49144178-49144197 | None:intergenic | 30.0% |
| AGGACTTATTTGATTCAATG+CGG | - | chr5_3:49144277-49144296 | None:intergenic | 30.0% | |
| ! | CCACTTATAAACACATTTTC+AGG | - | chr5_3:49144297-49144316 | None:intergenic | 30.0% |
| CCTGAAAATGTGTTTATAAG+TGG | + | chr5_3:49144294-49144313 | Msa0815520:intron | 30.0% | |
| GAAAATGTGTTTATAAGTGG+CGG | + | chr5_3:49144297-49144316 | Msa0815520:intron | 30.0% | |
| !! | TTTATAAACCGGTTTTGCAA+GGG | + | chr5_3:49144331-49144350 | Msa0815520:intron | 30.0% |
| ATCAAAAGATAGAGAGGAAA+TGG | + | chr5_3:49144617-49144636 | Msa0815520:three_prime_UTR | 30.0% | |
| AAATCACGTTCCAATATGAT+GGG | - | chr5_3:49144974-49144993 | None:intergenic | 30.0% | |
| ! | CTTTTTCTTGTAGCTATACA+TGG | + | chr5_3:49145170-49145189 | Msa0815520:intron | 30.0% |
| GAAGATATATGCAAACAAGT+TGG | + | chr5_3:49145192-49145211 | Msa0815520:three_prime_UTR | 30.0% | |
| !! | TGCAAACAAGTTGGTAAATA+TGG | + | chr5_3:49145201-49145220 | Msa0815520:three_prime_UTR | 30.0% |
| !! | GCAAACAAGTTGGTAAATAT+GGG | + | chr5_3:49145202-49145221 | Msa0815520:three_prime_UTR | 30.0% |
| !! | CAAACAAGTTGGTAAATATG+GGG | + | chr5_3:49145203-49145222 | Msa0815520:three_prime_UTR | 30.0% |
| !! | TTTGTTAACTTGCTTCCAAA+AGG | - | chr5_3:49145239-49145258 | None:intergenic | 30.0% |
| AGTTAACAAAGAGCAAAATG+AGG | + | chr5_3:49145249-49145268 | Msa0815520:three_prime_UTR | 30.0% | |
| ! | GAATTTGGTTAGTCAATGTT+TGG | + | chr5_3:49145315-49145334 | Msa0815520:intron | 30.0% |
| CATATGTATGAATGTCAAGT+CGG | + | chr5_3:49145840-49145859 | Msa0815520:intron | 30.0% | |
| ! | CAATTTTCTTAACTGCACAA+AGG | - | chr5_3:49145945-49145964 | None:intergenic | 30.0% |
| GGTTATTACTTGGATCTTAA+TGG | + | chr5_3:49146142-49146161 | Msa0815520:intron | 30.0% | |
| TGAATAAAATGATGTGTCTG+AGG | + | chr5_3:49146329-49146348 | Msa0815520:three_prime_UTR | 30.0% | |
| TAAAGAATTTGTCCGCTTCA+AGG | - | chr5_3:49140556-49140575 | None:intergenic | 35.0% | |
| ! | TAGCAAAGCACTTCTTCATA+TGG | - | chr5_3:49140617-49140636 | None:intergenic | 35.0% |
| !!! | TATGTTTTGGAGGGAAATCT+TGG | + | chr5_3:49140726-49140745 | Msa0815520:CDS | 35.0% |
| CTTTATATTGAGCTCTACAC+AGG | + | chr5_3:49140749-49140768 | Msa0815520:CDS | 35.0% | |
| TAACTCGAGCTTGAATCTTA+AGG | - | chr5_3:49140827-49140846 | None:intergenic | 35.0% | |
| CTAATTGCAAAGGCTACATA+TGG | - | chr5_3:49141025-49141044 | None:intergenic | 35.0% | |
| CATATGTAGCCTTTGCAATT+AGG | + | chr5_3:49141023-49141042 | Msa0815520:CDS | 35.0% | |
| ! | GAATTTGAGGTAATCTGTAG+GGG | - | chr5_3:49141113-49141132 | None:intergenic | 35.0% |
| ATACCCTTTCCTTGAATTTG+AGG | - | chr5_3:49141126-49141145 | None:intergenic | 35.0% | |
| ! | GAGAAATGACACACCATTTT+TGG | - | chr5_3:49141153-49141172 | None:intergenic | 35.0% |
| CTAATTGTAGCACAAGAAGT+TGG | - | chr5_3:49141288-49141307 | None:intergenic | 35.0% | |
| TAACTCGTTTCTTAAGCATG+TGG | + | chr5_3:49141312-49141331 | Msa0815520:intron | 35.0% | |
| AGCTACTAACTAATCTTTCG+AGG | - | chr5_3:49141416-49141435 | None:intergenic | 35.0% | |
| TCACTGATCTTCATGTAGTA+TGG | - | chr5_3:49141504-49141523 | None:intergenic | 35.0% | |
| AGTGAATCTATCTTCTTGGT+AGG | - | chr5_3:49141544-49141563 | None:intergenic | 35.0% | |
| ! | AATGCATTTGAAGCAGACTT+TGG | + | chr5_3:49141616-49141635 | Msa0815520:CDS | 35.0% |
| !! | GACTTTGGAGCATTTGATAT+TGG | + | chr5_3:49141631-49141650 | Msa0815520:CDS | 35.0% |
| TTCTTAACTTCAAGGACAAC+TGG | + | chr5_3:49141712-49141731 | Msa0815520:CDS | 35.0% | |
| TCTTAACTTCAAGGACAACT+GGG | + | chr5_3:49141713-49141732 | Msa0815520:CDS | 35.0% | |
| AATCATCATGGAGAAGTAAG+TGG | + | chr5_3:49141781-49141800 | Msa0815520:intron | 35.0% | |
| !!! | TATCTTTTGGAATTGCTGAG+AGG | - | chr5_3:49141975-49141994 | None:intergenic | 35.0% |
| CTGGAAATGAAATTGGCATT+AGG | - | chr5_3:49142229-49142248 | None:intergenic | 35.0% | |
| CTAATGCCAATTTCATTTCC+AGG | + | chr5_3:49142227-49142246 | Msa0815520:intron | 35.0% | |
| CTTCAACCTGGAAATGAAAT+TGG | - | chr5_3:49142236-49142255 | None:intergenic | 35.0% | |
| ! | CAATTTCATTTCCAGGTTGA+AGG | + | chr5_3:49142234-49142253 | Msa0815520:intron | 35.0% |
| ! | CTCATGGTAGAAATTTTACC+TGG | - | chr5_3:49142465-49142484 | None:intergenic | 35.0% |
| CAGGTAAAATTTCTACCATG+AGG | + | chr5_3:49142463-49142482 | Msa0815520:intron | 35.0% | |
| TCACAATGCAATAGAGATCA+TGG | - | chr5_3:49142548-49142567 | None:intergenic | 35.0% | |
| CGAGGTTTAAGAAAGATTTG+CGG | - | chr5_3:49142649-49142668 | None:intergenic | 35.0% | |
| ! | TTCAATTTGAAGTAGAGACG+AGG | - | chr5_3:49142667-49142686 | None:intergenic | 35.0% |
| ! | CACTTGTTGCAAAAAACAAC+AGG | + | chr5_3:49142736-49142755 | Msa0815520:intron | 35.0% |
| TTACATATTGGACCAAGTCA+AGG | + | chr5_3:49142763-49142782 | Msa0815520:CDS | 35.0% | |
| AGCATACTCTTAACATTGAC+AGG | + | chr5_3:49142918-49142937 | Msa0815520:intron | 35.0% | |
| CTTAACATTGACAGGTAACA+AGG | + | chr5_3:49142926-49142945 | Msa0815520:intron | 35.0% | |
| GAGTGTTTGGTATCATTGAT+TGG | - | chr5_3:49142997-49143016 | None:intergenic | 35.0% | |
| ACATTTACCCTTATCTTGAG+AGG | + | chr5_3:49143082-49143101 | Msa0815520:intron | 35.0% | |
| GAGTAAACCTCTCAAGATAA+GGG | - | chr5_3:49143092-49143111 | None:intergenic | 35.0% | |
| TGAGTAAACCTCTCAAGATA+AGG | - | chr5_3:49143093-49143112 | None:intergenic | 35.0% | |
| TTATCTTGAGAGGTTTACTC+AGG | + | chr5_3:49143092-49143111 | Msa0815520:intron | 35.0% | |
| !!! | TTCACGGTTTTTTACCTTGT+AGG | + | chr5_3:49143128-49143147 | Msa0815520:intron | 35.0% |
| AGAAGGAAAGTTCATAAGAG+TGG | - | chr5_3:49143276-49143295 | None:intergenic | 35.0% | |
| ! | CAACCAAAGTATTCGTAAGA+AGG | - | chr5_3:49143293-49143312 | None:intergenic | 35.0% |
| ! | GGATGCAACAACCAAAATTT+TGG | + | chr5_3:49143322-49143341 | Msa0815520:intron | 35.0% |
| GTTATTGGAAATTACACGGA+TGG | + | chr5_3:49143371-49143390 | Msa0815520:CDS | 35.0% | |
| ! | AAATTTGGTGGCATCACTAA+TGG | + | chr5_3:49143394-49143413 | Msa0815520:CDS | 35.0% |
| TCACTAATGGCTAGAAAACT+TGG | + | chr5_3:49143407-49143426 | Msa0815520:CDS | 35.0% | |
| CACTAATGGCTAGAAAACTT+GGG | + | chr5_3:49143408-49143427 | Msa0815520:CDS | 35.0% | |
| TAGAAAACTTGGGATAACTC+AGG | + | chr5_3:49143418-49143437 | Msa0815520:CDS | 35.0% | |
| ATGAAGACTCAGATGTTAAG+TGG | + | chr5_3:49143570-49143589 | Msa0815520:CDS | 35.0% | |
| TCACTTCTCATGTCAATTCA+TGG | + | chr5_3:49143613-49143632 | Msa0815520:CDS | 35.0% | |
| AGCAATTTCTTGGTATGTAC+TGG | - | chr5_3:49143678-49143697 | None:intergenic | 35.0% | |
| AGTACATACCAAGAAATTGC+TGG | + | chr5_3:49143677-49143696 | Msa0815520:CDS | 35.0% | |
| GGTGAAGCTATATTGAACTT+GGG | - | chr5_3:49143902-49143921 | None:intergenic | 35.0% | |
| AGGTGAAGCTATATTGAACT+TGG | - | chr5_3:49143903-49143922 | None:intergenic | 35.0% | |
| AAGTTCAATATAGCTTCACC+TGG | + | chr5_3:49143902-49143921 | Msa0815520:CDS | 35.0% | |
| AAGACTCATCTGAGAAGATA+AGG | + | chr5_3:49144082-49144101 | Msa0815520:intron | 35.0% | |
| TTACAACTAAAACTGGTACG+AGG | - | chr5_3:49144141-49144160 | None:intergenic | 35.0% | |
| !!! | TCGTACCAGTTTTAGTTGTA+AGG | + | chr5_3:49144140-49144159 | Msa0815520:intron | 35.0% |
| !!! | CGTACCAGTTTTAGTTGTAA+GGG | + | chr5_3:49144141-49144160 | Msa0815520:intron | 35.0% |
| TCAACCCTTACAACTAAAAC+TGG | - | chr5_3:49144148-49144167 | None:intergenic | 35.0% | |
| TTAGTTGTAAGGGTTGAGTT+AGG | + | chr5_3:49144151-49144170 | Msa0815520:intron | 35.0% | |
| ! | GGTCCAACTCAAATTTTAGA+CGG | + | chr5_3:49144172-49144191 | Msa0815520:intron | 35.0% |
| GGACTTATTTGATTCAATGC+GGG | - | chr5_3:49144276-49144295 | None:intergenic | 35.0% | |
| ACAGTCCTCACTTTATAAAC+CGG | + | chr5_3:49144320-49144339 | Msa0815520:intron | 35.0% | |
| ! | CAAAACCGGTTTATAAAGTG+AGG | - | chr5_3:49144328-49144347 | None:intergenic | 35.0% |
| !! | CTTTATAAACCGGTTTTGCA+AGG | + | chr5_3:49144330-49144349 | Msa0815520:intron | 35.0% |
| GAAACCAATAATCTTCTCGA+TGG | + | chr5_3:49144479-49144498 | Msa0815520:CDS | 35.0% | |
| GATGTTGTGAAGAACTTAAG+CGG | + | chr5_3:49144510-49144529 | Msa0815520:exon | 35.0% | |
| ATGTTGTGAAGAACTTAAGC+GGG | + | chr5_3:49144511-49144530 | Msa0815520:exon | 35.0% | |
| GAACAAGAGACTAAGAAACT+TGG | + | chr5_3:49144554-49144573 | Msa0815520:three_prime_UTR | 35.0% | |
| AACTAAAGGGACAATTCAGA+TGG | + | chr5_3:49144679-49144698 | Msa0815520:three_prime_UTR | 35.0% | |
| CCTTGATTAGTAGCAAAAGT+TGG | - | chr5_3:49144840-49144859 | None:intergenic | 35.0% | |
| ! | CCAACTTTTGCTACTAATCA+AGG | + | chr5_3:49144837-49144856 | Msa0815520:three_prime_UTR | 35.0% |
| ! | ACTTTTGCTACTAATCAAGG+AGG | + | chr5_3:49144840-49144859 | Msa0815520:three_prime_UTR | 35.0% |
| !! | CCATCAACAATTATTTCTGC+TGG | - | chr5_3:49144867-49144886 | None:intergenic | 35.0% |
| CCAGCAGAAATAATTGTTGA+TGG | + | chr5_3:49144864-49144883 | Msa0815520:three_prime_UTR | 35.0% | |
| !! | ATAATTGTTGATGGTGTCTC+AGG | + | chr5_3:49144873-49144892 | Msa0815520:three_prime_UTR | 35.0% |
| GAAATCACGTTCCAATATGA+TGG | - | chr5_3:49144975-49144994 | None:intergenic | 35.0% | |
| ATATTGGAACGTGATTTCTG+CGG | + | chr5_3:49144977-49144996 | Msa0815520:three_prime_UTR | 35.0% | |
| ! | GGGTCTTATAAAAATGGACA+AGG | - | chr5_3:49145058-49145077 | None:intergenic | 35.0% |
| TTGTGATACGTTAATGTGAC+AGG | + | chr5_3:49145412-49145431 | Msa0815520:intron | 35.0% | |
| !! | CGGTATAAAGAAAGTGTCAT+AGG | + | chr5_3:49145591-49145610 | Msa0815520:intron | 35.0% |
| ATGATACACAGACTTGACAA+TGG | + | chr5_3:49145771-49145790 | Msa0815520:intron | 35.0% | |
| CGACTTGACATTCATACATA+TGG | - | chr5_3:49145842-49145861 | None:intergenic | 35.0% | |
| GTTCACAATCCACATTGAAA+AGG | + | chr5_3:49146035-49146054 | Msa0815520:three_prime_UTR | 35.0% | |
| AAAAACACTTGCACACTTTC+AGG | + | chr5_3:49146121-49146140 | Msa0815520:intron | 35.0% | |
| !! | CACACTTTCAGGTTATTACT+TGG | + | chr5_3:49146132-49146151 | Msa0815520:intron | 35.0% |
| AAGAAGGTTATACACATCAG+AGG | - | chr5_3:49146228-49146247 | None:intergenic | 35.0% | |
| CAATGCATCAGGCATGTTAT+CGG | - | chr5_3:49140580-49140599 | None:intergenic | 40.0% | |
| AGTACCTAGAAAAAGGGAGA+AGG | + | chr5_3:49140637-49140656 | Msa0815520:CDS | 40.0% | |
| ! | TGATCCTTCTCCCTTTTTCT+AGG | - | chr5_3:49140644-49140663 | None:intergenic | 40.0% |
| ! | TACTCAATGTGTTGGACTAG+TGG | - | chr5_3:49140897-49140916 | None:intergenic | 40.0% |
| ATTGCAAAGGCTACATATGG+TGG | - | chr5_3:49141022-49141041 | None:intergenic | 40.0% | |
| ! | TGGATTAGGCCTAATTGCAA+AGG | - | chr5_3:49141035-49141054 | None:intergenic | 40.0% |
| TTTGCAATTAGGCCTAATCC+AGG | + | chr5_3:49141034-49141053 | Msa0815520:CDS | 40.0% | |
| TATTCCCAAACTCCTGGATT+AGG | - | chr5_3:49141049-49141068 | None:intergenic | 40.0% | |
| TGTACATATTCCCAAACTCC+TGG | - | chr5_3:49141055-49141074 | None:intergenic | 40.0% | |
| GAGGTACGAAGATCTATGTA+AGG | - | chr5_3:49141397-49141416 | None:intergenic | 40.0% | |
| TTCAAGGACAACTGGGAAAT+TGG | + | chr5_3:49141720-49141739 | Msa0815520:CDS | 40.0% | |
| GATAAATGACACGTTGAGCT+CGG | + | chr5_3:49141909-49141928 | Msa0815520:CDS | 40.0% | |
| GTAGTGATCTTCTCAGTTCA+TGG | + | chr5_3:49142394-49142413 | Msa0815520:CDS | 40.0% | |
| ! | TCTAAACATTGGAGAGCATG+CGG | + | chr5_3:49142569-49142588 | Msa0815520:intron | 40.0% |
| AGACTCACCACAAGAATTTG+AGG | - | chr5_3:49142842-49142861 | None:intergenic | 40.0% | |
| ! | CATTGATTGGTTCAAACTCC+TGG | - | chr5_3:49142984-49143003 | None:intergenic | 40.0% |
| !! | ACGTAGAATGTGAGAGTGTT+TGG | - | chr5_3:49143010-49143029 | None:intergenic | 40.0% |
| ! | GTGCCTTTTCATACAGAGAA+AGG | + | chr5_3:49143030-49143049 | Msa0815520:CDS | 40.0% |
| TACCTTGTAGGCTTGTACTA+TGG | + | chr5_3:49143140-49143159 | Msa0815520:intron | 40.0% | |
| AACCATAGTACAAGCCTACA+AGG | - | chr5_3:49143145-49143164 | None:intergenic | 40.0% | |
| TGTGAACGCAATTACAGTTG+TGG | + | chr5_3:49143218-49143237 | Msa0815520:intron | 40.0% | |
| TTACACGGATGGAAATTTGG+TGG | + | chr5_3:49143382-49143401 | Msa0815520:CDS | 40.0% | |
| CATACCAAGAAATTGCTGGA+AGG | + | chr5_3:49143681-49143700 | Msa0815520:CDS | 40.0% | |
| CAAACCTTCCAGCAATTTCT+TGG | - | chr5_3:49143688-49143707 | None:intergenic | 40.0% | |
| ! | TTTTGCAGCAAAGATAGACC+TGG | + | chr5_3:49143803-49143822 | Msa0815520:intron | 40.0% |
| !! | GCCTATGTAGAGTTGTTTCT+GGG | + | chr5_3:49143861-49143880 | Msa0815520:CDS | 40.0% |
| TCCCAGAAACAACTCTACAT+AGG | - | chr5_3:49143865-49143884 | None:intergenic | 40.0% | |
| TAGATACTTTGATCAGCACC+AGG | - | chr5_3:49143923-49143942 | None:intergenic | 40.0% | |
| AGAGGAGATCTTCAATAGCA+GGG | - | chr5_3:49143988-49144007 | None:intergenic | 40.0% | |
| AAGAGGAGATCTTCAATAGC+AGG | - | chr5_3:49143989-49144008 | None:intergenic | 40.0% | |
| TCATCTGAGAAGATAAGGTC+AGG | + | chr5_3:49144087-49144106 | Msa0815520:intron | 40.0% | |
| TAAGATCCAATCAGACCACA+CGG | + | chr5_3:49144209-49144228 | Msa0815520:intron | 40.0% | |
| TAACTCAACCCTTGCAAAAC+CGG | - | chr5_3:49144342-49144361 | None:intergenic | 40.0% | |
| CTTGCCATCGAGAAGATTAT+TGG | - | chr5_3:49144486-49144505 | None:intergenic | 40.0% | |
| CAATAATCTTCTCGATGGCA+AGG | + | chr5_3:49144484-49144503 | Msa0815520:CDS | 40.0% | |
| !! | ACTTAAGCGGGTTAGTTGAA+TGG | + | chr5_3:49144523-49144542 | Msa0815520:three_prime_UTR | 40.0% |
| TTGGTGAACCTTGTCATAGT+TGG | + | chr5_3:49144573-49144592 | Msa0815520:three_prime_UTR | 40.0% | |
| CCAAATGCTTCATACAAAGC+AGG | - | chr5_3:49144783-49144802 | None:intergenic | 40.0% | |
| ! | CCTGCTTTGTATGAAGCATT+TGG | + | chr5_3:49144780-49144799 | Msa0815520:three_prime_UTR | 40.0% |
| GTCATTGAAGCAATGAACTG+TGG | + | chr5_3:49144810-49144829 | Msa0815520:three_prime_UTR | 40.0% | |
| TTCCACATTGATCCTCTCAA+TGG | + | chr5_3:49144897-49144916 | Msa0815520:three_prime_UTR | 40.0% | |
| CTTGATTCATCTCCATTGAG+AGG | - | chr5_3:49144912-49144931 | None:intergenic | 40.0% | |
| GCAAAGTAGACCCATCATAT+TGG | + | chr5_3:49144961-49144980 | Msa0815520:three_prime_UTR | 40.0% | |
| TTCATTTATGCGCTGCAATC+CGG | - | chr5_3:49145003-49145022 | None:intergenic | 40.0% | |
| GATTGCAGCGCATAAATGAA+TGG | + | chr5_3:49145003-49145022 | Msa0815520:three_prime_UTR | 40.0% | |
| ACAAGGAAACATCTCAAGAG+GGG | - | chr5_3:49145041-49145060 | None:intergenic | 40.0% | |
| GACAAGGAAACATCTCAAGA+GGG | - | chr5_3:49145042-49145061 | None:intergenic | 40.0% | |
| ! | TGCTGATGGTGCACATAAAA+GGG | - | chr5_3:49145122-49145141 | None:intergenic | 40.0% |
| ! | TTGCTGATGGTGCACATAAA+AGG | - | chr5_3:49145123-49145142 | None:intergenic | 40.0% |
| CAACCAACTCTCAAACAACA+AGG | + | chr5_3:49145485-49145504 | Msa0815520:three_prime_UTR | 40.0% | |
| TGCTGCAAACCAAGAAGAAA+AGG | - | chr5_3:49146009-49146028 | None:intergenic | 40.0% | |
| ! | CAATGTGGATTGTGAACGTT+TGG | - | chr5_3:49146032-49146051 | None:intergenic | 40.0% |
| AAGGTTATACACATCAGAGG+AGG | - | chr5_3:49146225-49146244 | None:intergenic | 40.0% | |
| CTCCAACACATACCTTGAAG+CGG | + | chr5_3:49140541-49140560 | Msa0815520:CDS | 45.0% | |
| CTACTCTGCTTCAATGCATC+AGG | - | chr5_3:49140591-49140610 | None:intergenic | 45.0% | |
| !! | AATGTGTTGGACTAGTGGTG+GGG | - | chr5_3:49140892-49140911 | None:intergenic | 45.0% |
| !! | CAATGTGTTGGACTAGTGGT+GGG | - | chr5_3:49140893-49140912 | None:intergenic | 45.0% |
| !! | TCAATGTGTTGGACTAGTGG+TGG | - | chr5_3:49140894-49140913 | None:intergenic | 45.0% |
| TGTGGTGCATATGATCTTGC+AGG | + | chr5_3:49140982-49141001 | Msa0815520:intron | 45.0% | |
| TTAGGCCTAATCCAGGAGTT+TGG | + | chr5_3:49141041-49141060 | Msa0815520:CDS | 45.0% | |
| TAGGCCTAATCCAGGAGTTT+GGG | + | chr5_3:49141042-49141061 | Msa0815520:CDS | 45.0% | |
| !! | GAAAGAGCGCTTGTTAGAAG+AGG | + | chr5_3:49141365-49141384 | Msa0815520:intron | 45.0% |
| ! | GGCAAAAGCACAGACTATAG+TGG | + | chr5_3:49141741-49141760 | Msa0815520:CDS | 45.0% |
| GATTGTTTATGTCGCGGTTG+AGG | - | chr5_3:49142144-49142163 | None:intergenic | 45.0% | |
| ! | TCATTTCCAGGTTGAAGGAG+TGG | + | chr5_3:49142239-49142258 | Msa0815520:intron | 45.0% |
| ! | CATTTCCAGGTTGAAGGAGT+GGG | + | chr5_3:49142240-49142259 | Msa0815520:intron | 45.0% |
| ! | ATTTCCAGGTTGAAGGAGTG+GGG | + | chr5_3:49142241-49142260 | Msa0815520:intron | 45.0% |
| AAAGGATGGGGAGATAATGC+AGG | + | chr5_3:49142271-49142290 | Msa0815520:CDS | 45.0% | |
| ATGGGGAGATAATGCAGGAA+GGG | + | chr5_3:49142276-49142295 | Msa0815520:CDS | 45.0% | |
| AGATAATGCAGGAAGGGTGA+AGG | + | chr5_3:49142282-49142301 | Msa0815520:CDS | 45.0% | |
| !! | ATCAGAAGTACTCCAAGCTC+CGG | + | chr5_3:49142321-49142340 | Msa0815520:CDS | 45.0% |
| ATTTCCAGGTTCACTGGATC+CGG | - | chr5_3:49142343-49142362 | None:intergenic | 45.0% | |
| TTTGGGCAAGCAGATGTTCT+TGG | + | chr5_3:49142421-49142440 | Msa0815520:CDS | 45.0% | |
| !! | AGGTTGATACCTGATGCTAG+AGG | + | chr5_3:49142946-49142965 | Msa0815520:CDS | 45.0% |
| CACTTAGTTCCTCTAGCATC+AGG | - | chr5_3:49142958-49142977 | None:intergenic | 45.0% | |
| ! | TGATTGGTTCAAACTCCTGG+TGG | - | chr5_3:49142981-49143000 | None:intergenic | 45.0% |
| AGAAAGGAATCTTGCGCCAA+TGG | + | chr5_3:49143046-49143065 | Msa0815520:CDS | 45.0% | |
| GAAAGGAATCTTGCGCCAAT+GGG | + | chr5_3:49143047-49143066 | Msa0815520:CDS | 45.0% | |
| AGGCATGTATACACGCTTCA+CGG | + | chr5_3:49143112-49143131 | Msa0815520:intron | 45.0% | |
| ! | GGGAAGCCAGATCTTGTTAT+TGG | + | chr5_3:49143356-49143375 | Msa0815520:CDS | 45.0% |
| CTGGAAGAGTAAATGCAGCA+TGG | - | chr5_3:49143841-49143860 | None:intergenic | 45.0% | |
| CATGCTGCATTTACTCTTCC+AGG | + | chr5_3:49143839-49143858 | Msa0815520:CDS | 45.0% | |
| GAAACAACTCTACATAGGCC+TGG | - | chr5_3:49143860-49143879 | None:intergenic | 45.0% | |
| ! | GGCCTATGTAGAGTTGTTTC+TGG | + | chr5_3:49143860-49143879 | Msa0815520:CDS | 45.0% |
| AAGATCCAATCAGACCACAC+GGG | + | chr5_3:49144210-49144229 | Msa0815520:intron | 45.0% | |
| ! | AGATGTCTAGTCTTCGCATG+AGG | + | chr5_3:49144241-49144260 | Msa0815520:intron | 45.0% |
| ! | GATGTCTAGTCTTCGCATGA+GGG | + | chr5_3:49144242-49144261 | Msa0815520:intron | 45.0% |
| ! | GGTTTTGCAAGGGTTGAGTT+AGG | + | chr5_3:49144341-49144360 | Msa0815520:intron | 45.0% |
| GTGGATATCTAGCAGAGAAG+AGG | + | chr5_3:49144457-49144476 | Msa0815520:intron | 45.0% | |
| !! | AGCGGGTTAGTTGAATGGTA+TGG | + | chr5_3:49144528-49144547 | Msa0815520:three_prime_UTR | 45.0% |
| GTGAACCTTGTCATAGTTGG+TGG | + | chr5_3:49144576-49144595 | Msa0815520:three_prime_UTR | 45.0% | |
| AGAAGCCACCAACTATGACA+AGG | - | chr5_3:49144584-49144603 | None:intergenic | 45.0% | |
| CAGACTGATCGATATCGCAA+CGG | + | chr5_3:49144711-49144730 | Msa0815520:three_prime_UTR | 45.0% | |
| !! | TCGATGCATTGCTGACTCAA+AGG | + | chr5_3:49144743-49144762 | Msa0815520:three_prime_UTR | 45.0% |
| !! | CGATGCATTGCTGACTCAAA+GGG | + | chr5_3:49144744-49144763 | Msa0815520:three_prime_UTR | 45.0% |
| CTCCATTGAGAGGATCAATG+TGG | - | chr5_3:49144902-49144921 | None:intergenic | 45.0% | |
| AACATCTCAAGAGGGGACAT+AGG | - | chr5_3:49145034-49145053 | None:intergenic | 45.0% | |
| GGACAAGGAAACATCTCAAG+AGG | - | chr5_3:49145043-49145062 | None:intergenic | 45.0% | |
| ! | TGGGGAACACTTACACCTTT+TGG | + | chr5_3:49145221-49145240 | Msa0815520:three_prime_UTR | 45.0% |
| !!! | TGCTTGTCAACTGGTTTTGG+AGG | - | chr5_3:49145467-49145486 | None:intergenic | 45.0% |
| !! | GGTTGCTTGTCAACTGGTTT+TGG | - | chr5_3:49145470-49145489 | None:intergenic | 45.0% |
| ! | AGAGTTGGTTGCTTGTCAAC+TGG | - | chr5_3:49145476-49145495 | None:intergenic | 45.0% |
| !! | GAGCCTTGTTGTTTGAGAGT+TGG | - | chr5_3:49145491-49145510 | None:intergenic | 45.0% |
| CTCTCAAACAACAAGGCTCT+AGG | + | chr5_3:49145492-49145511 | Msa0815520:three_prime_UTR | 45.0% | |
| TGTCAAACACTGACACGTGT+CGG | + | chr5_3:49145863-49145882 | Msa0815520:intron | 45.0% | |
| !! | TAAATTTATTTATATAATCT+TGG | + | chr5_3:49146059-49146078 | Msa0815520:intron | 5.0% |
| GTCCGCTTCAAGGTATGTGT+TGG | - | chr5_3:49140546-49140565 | None:intergenic | 50.0% | |
| CTCTGATGACCTCTCTGTTG+AGG | + | chr5_3:49141081-49141100 | Msa0815520:CDS | 50.0% | |
| ! | TTTCCAGGTTGAAGGAGTGG+GGG | + | chr5_3:49142242-49142261 | Msa0815520:intron | 50.0% |
| AAGGAGTGGGGGTTTGAGAA+AGG | + | chr5_3:49142253-49142272 | Msa0815520:CDS | 50.0% | |
| AGTGGGGGTTTGAGAAAGGA+TGG | + | chr5_3:49142257-49142276 | Msa0815520:CDS | 50.0% | |
| GTGGGGGTTTGAGAAAGGAT+GGG | + | chr5_3:49142258-49142277 | Msa0815520:CDS | 50.0% | |
| TGGGGGTTTGAGAAAGGATG+GGG | + | chr5_3:49142259-49142278 | Msa0815520:CDS | 50.0% | |
| GATGGGGAGATAATGCAGGA+AGG | + | chr5_3:49142275-49142294 | Msa0815520:CDS | 50.0% | |
| TGTCTCTGCGACTGCAACTA+AGG | - | chr5_3:49142605-49142624 | None:intergenic | 50.0% | |
| ATTGGACCAAGTCAAGGCGT+TGG | + | chr5_3:49142769-49142788 | Msa0815520:CDS | 50.0% | |
| TAGAGGAACTAAGTGCCACC+AGG | + | chr5_3:49142963-49142982 | Msa0815520:CDS | 50.0% | |
| TGTCGAAGCGAGAAACCCAT+TGG | - | chr5_3:49143065-49143084 | None:intergenic | 50.0% | |
| ! | GATCTGGCTTCCCTTCCATT+AGG | - | chr5_3:49143349-49143368 | None:intergenic | 50.0% |
| GCATGGCTTTCATACTGTCC+AGG | - | chr5_3:49143824-49143843 | None:intergenic | 50.0% | |
| ACATCTGTATGTGACCCGTG+TGG | - | chr5_3:49144227-49144246 | None:intergenic | 50.0% | |
| !! | TTGGACTAGTGGTGGGGCAA+GGG | - | chr5_3:49140886-49140905 | None:intergenic | 55.0% |
| GGGTGATAGCCTCAACAGAG+AGG | - | chr5_3:49141093-49141112 | None:intergenic | 55.0% | |
| CTCGGCTGCAAAGCTTCAGA+TGG | + | chr5_3:49141927-49141946 | Msa0815520:CDS | 55.0% | |
| AAACCCCCACTCCTTCAACC+TGG | - | chr5_3:49142248-49142267 | None:intergenic | 55.0% | |
| !! | GTTCTTGGCTTGCCAGACAC+TGG | + | chr5_3:49142436-49142455 | Msa0815520:CDS | 55.0% |
| TTTACCTGGCCACCAGTGTC+TGG | - | chr5_3:49142451-49142470 | None:intergenic | 55.0% | |
| ! | GGAGAGCATGCGGTGTAATG+CGG | + | chr5_3:49142579-49142598 | Msa0815520:intron | 55.0% |
| GATTTGCGGCTGCGACATCT+TGG | - | chr5_3:49142635-49142654 | None:intergenic | 55.0% | |
| CCTCTTCCAACGCCTTGACT+TGG | - | chr5_3:49142778-49142797 | None:intergenic | 55.0% | |
| !! | CCAAGTCAAGGCGTTGGAAG+AGG | + | chr5_3:49142775-49142794 | Msa0815520:CDS | 55.0% |
| TGTGACCCGTGTGGTCTGAT+TGG | - | chr5_3:49144218-49144237 | None:intergenic | 55.0% | |
| TGGAACGTGATTTCTGCGGC+CGG | + | chr5_3:49144981-49145000 | Msa0815520:three_prime_UTR | 55.0% | |
| !! | TGGACTAGTGGTGGGGCAAG+GGG | - | chr5_3:49140885-49140904 | None:intergenic | 60.0% |
| !! | GTTGGACTAGTGGTGGGGCA+AGG | - | chr5_3:49140887-49140906 | None:intergenic | 60.0% |
| GGTTCACTGGATCCGGAGCT+TGG | - | chr5_3:49142336-49142355 | None:intergenic | 60.0% | |
| AGCTCCGGATCCAGTGAACC+TGG | + | chr5_3:49142336-49142355 | Msa0815520:CDS | 60.0% | |
| !! | CTTGGCTTGCCAGACACTGG+TGG | + | chr5_3:49142439-49142458 | Msa0815520:CDS | 60.0% |
| ! | GTCTTCGCATGAGGGTGTGC+AGG | + | chr5_3:49144250-49144269 | Msa0815520:intron | 60.0% |
| CTTGCCAGACACTGGTGGCC+AGG | + | chr5_3:49142444-49142463 | Msa0815520:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 49140458 | 49146354 | 49140458 | ID=Msa0815520;Name=Msa0815520 |
| chr5_3 | mRNA | 49140458 | 49146354 | 49140458 | ID=Msa0815520-mRNA-1;Parent=Msa0815520;Name=Msa0815520-mRNA-1;_AED=0.12;_eAED=0.12;_QI=79|0.85|0.86|1|0.85|0.8|15|974|561 |
| chr5_3 | exon | 49140458 | 49140770 | 49140458 | ID=Msa0815520-mRNA-1:exon:14738;Parent=Msa0815520-mRNA-1 |
| chr5_3 | exon | 49141004 | 49141158 | 49141004 | ID=Msa0815520-mRNA-1:exon:14739;Parent=Msa0815520-mRNA-1 |
| chr5_3 | exon | 49141603 | 49141795 | 49141603 | ID=Msa0815520-mRNA-1:exon:14740;Parent=Msa0815520-mRNA-1 |
| chr5_3 | exon | 49141901 | 49142019 | 49141901 | ID=Msa0815520-mRNA-1:exon:14741;Parent=Msa0815520-mRNA-1 |
| chr5_3 | exon | 49142249 | 49142465 | 49142249 | ID=Msa0815520-mRNA-1:exon:14742;Parent=Msa0815520-mRNA-1 |
| chr5_3 | exon | 49142758 | 49142853 | 49142758 | ID=Msa0815520-mRNA-1:exon:14743;Parent=Msa0815520-mRNA-1 |
| chr5_3 | exon | 49142940 | 49143068 | 49142940 | ID=Msa0815520-mRNA-1:exon:14744;Parent=Msa0815520-mRNA-1 |
| chr5_3 | exon | 49143323 | 49143439 | 49143323 | ID=Msa0815520-mRNA-1:exon:14745;Parent=Msa0815520-mRNA-1 |
| chr5_3 | exon | 49143536 | 49143702 | 49143536 | ID=Msa0815520-mRNA-1:exon:14746;Parent=Msa0815520-mRNA-1 |
| chr5_3 | exon | 49143811 | 49144015 | 49143811 | ID=Msa0815520-mRNA-1:exon:14747;Parent=Msa0815520-mRNA-1 |
| chr5_3 | exon | 49144458 | 49145024 | 49144458 | ID=Msa0815520-mRNA-1:exon:14748;Parent=Msa0815520-mRNA-1 |
| chr5_3 | exon | 49145183 | 49145321 | 49145183 | ID=Msa0815520-mRNA-1:exon:14749;Parent=Msa0815520-mRNA-1 |
| chr5_3 | exon | 49145434 | 49145513 | 49145434 | ID=Msa0815520-mRNA-1:exon:14750;Parent=Msa0815520-mRNA-1 |
| chr5_3 | exon | 49146027 | 49146056 | 49146027 | ID=Msa0815520-mRNA-1:exon:14751;Parent=Msa0815520-mRNA-1 |
| chr5_3 | exon | 49146143 | 49146354 | 49146143 | ID=Msa0815520-mRNA-1:exon:14752;Parent=Msa0815520-mRNA-1 |
| chr5_3 | five_prime_UTR | 49140458 | 49140536 | 49140458 | ID=Msa0815520-mRNA-1:five_prime_utr;Parent=Msa0815520-mRNA-1 |
| chr5_3 | CDS | 49140537 | 49140770 | 49140537 | ID=Msa0815520-mRNA-1:cds;Parent=Msa0815520-mRNA-1 |
| chr5_3 | CDS | 49141004 | 49141158 | 49141004 | ID=Msa0815520-mRNA-1:cds;Parent=Msa0815520-mRNA-1 |
| chr5_3 | CDS | 49141603 | 49141795 | 49141603 | ID=Msa0815520-mRNA-1:cds;Parent=Msa0815520-mRNA-1 |
| chr5_3 | CDS | 49141901 | 49142019 | 49141901 | ID=Msa0815520-mRNA-1:cds;Parent=Msa0815520-mRNA-1 |
| chr5_3 | CDS | 49142249 | 49142465 | 49142249 | ID=Msa0815520-mRNA-1:cds;Parent=Msa0815520-mRNA-1 |
| chr5_3 | CDS | 49142758 | 49142853 | 49142758 | ID=Msa0815520-mRNA-1:cds;Parent=Msa0815520-mRNA-1 |
| chr5_3 | CDS | 49142940 | 49143068 | 49142940 | ID=Msa0815520-mRNA-1:cds;Parent=Msa0815520-mRNA-1 |
| chr5_3 | CDS | 49143323 | 49143439 | 49143323 | ID=Msa0815520-mRNA-1:cds;Parent=Msa0815520-mRNA-1 |
| chr5_3 | CDS | 49143536 | 49143702 | 49143536 | ID=Msa0815520-mRNA-1:cds;Parent=Msa0815520-mRNA-1 |
| chr5_3 | CDS | 49143811 | 49144015 | 49143811 | ID=Msa0815520-mRNA-1:cds;Parent=Msa0815520-mRNA-1 |
| chr5_3 | CDS | 49144458 | 49144511 | 49144458 | ID=Msa0815520-mRNA-1:cds;Parent=Msa0815520-mRNA-1 |
| chr5_3 | three_prime_UTR | 49144512 | 49145024 | 49144512 | ID=Msa0815520-mRNA-1:three_prime_utr;Parent=Msa0815520-mRNA-1 |
| chr5_3 | three_prime_UTR | 49145183 | 49145321 | 49145183 | ID=Msa0815520-mRNA-1:three_prime_utr;Parent=Msa0815520-mRNA-1 |
| chr5_3 | three_prime_UTR | 49145434 | 49145513 | 49145434 | ID=Msa0815520-mRNA-1:three_prime_utr;Parent=Msa0815520-mRNA-1 |
| chr5_3 | three_prime_UTR | 49146027 | 49146056 | 49146027 | ID=Msa0815520-mRNA-1:three_prime_utr;Parent=Msa0815520-mRNA-1 |
| chr5_3 | three_prime_UTR | 49146143 | 49146354 | 49146143 | ID=Msa0815520-mRNA-1:three_prime_utr;Parent=Msa0815520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
