AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1267180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1267180 MtrunA17_Chr4g0069801 97.566 493 11 1 1 493 1 492 0.0 992
Msa1267180 MtrunA17_Chr1g0148391 57.456 456 189 3 1 455 1 452 0.0 526
Msa1267180 MtrunA17_Chr3g0138741 53.958 480 216 3 4 481 8 484 1.35e-180 515
Msa1267180 MtrunA17_Chr6g0461601 51.509 464 211 7 1 456 1 458 4.63e-161 465
Msa1267180 MtrunA17_Chr4g0062771 49.889 451 216 6 11 455 14 460 2.53e-159 461
Msa1267180 MtrunA17_Chr4g0076581 50.321 467 220 6 31 493 36 494 2.35e-157 456
Msa1267180 MtrunA17_Chr8g0383311 48.018 454 229 4 6 455 20 470 1.42e-156 454
Msa1267180 MtrunA17_Chr2g0290821 52.055 438 202 5 31 464 31 464 3.05e-156 453
Msa1267180 MtrunA17_Chr7g0253091 52.009 448 206 5 27 469 25 468 7.38e-156 452
Msa1267180 MtrunA17_Chr2g0306311 44.190 525 246 8 1 492 1 511 1.24e-150 439
Msa1267180 MtrunA17_Chr3g0129341 45.661 484 242 8 13 481 10 487 1.84e-138 407
Msa1267180 MtrunA17_Chr3g0105981 44.819 415 224 4 21 434 20 430 1.28e-121 362
Msa1267180 MtrunA17_Chr4g0046311 32.903 465 277 18 14 454 9 462 1.23e-67 224
Msa1267180 MtrunA17_Chr8g0339191 34.989 443 260 17 30 455 31 462 4.09e-65 218
Msa1267180 MtrunA17_Chr3g0144531 33.260 457 273 16 3 443 8 448 2.13e-64 215
Msa1267180 MtrunA17_Chr4g0034901 32.527 455 276 16 10 443 9 453 1.11e-63 214
Msa1267180 MtrunA17_Chr1g0161011 33.480 454 275 16 11 451 6 445 1.00e-59 204
Msa1267180 MtrunA17_Chr4g0003281 36.389 360 206 13 7 351 12 363 4.35e-59 200
Msa1267180 MtrunA17_Chr5g0434591 31.729 457 280 17 10 451 5 444 2.95e-58 200
Msa1267180 MtrunA17_Chr2g0294601 34.181 354 221 7 1 352 33 376 7.29e-58 196
Msa1267180 MtrunA17_Chr7g0234821 32.184 435 259 19 39 451 38 458 1.71e-55 192
Msa1267180 MtrunA17_Chr1g0177171 29.638 469 275 18 24 451 36 490 3.52e-55 192
Msa1267180 MtrunA17_Chr2g0294591 36.218 312 189 6 40 349 41 344 4.83e-55 188
Msa1267180 MtrunA17_Chr3g0121271 28.571 462 299 16 1 449 1 444 1.87e-54 190
Msa1267180 MtrunA17_Chr8g0378621 30.416 457 289 16 10 451 6 448 2.80e-54 189
Msa1267180 MtrunA17_Chr3g0110371 30.819 464 276 21 10 451 5 445 5.74e-54 189
Msa1267180 MtrunA17_Chr4g0039071 33.861 316 198 7 32 345 29 335 8.02e-54 185
Msa1267180 MtrunA17_Chr5g0439251 30.573 471 279 18 24 459 23 480 9.34e-54 188
Msa1267180 MtrunA17_Chr6g0487261 30.682 440 270 19 41 462 40 462 3.79e-52 184
Msa1267180 MtrunA17_Chr8g0389741 29.647 425 275 14 39 451 40 452 1.04e-51 183
Msa1267180 MtrunA17_Chr7g0250301 37.037 324 189 10 25 345 5 316 1.57e-51 177
Msa1267180 MtrunA17_Chr7g0223961 30.254 433 266 19 31 443 26 442 1.57e-51 181
Msa1267180 MtrunA17_Chr1g0146831 34.218 339 202 13 14 343 17 343 2.31e-50 176
Msa1267180 MtrunA17_Chr4g0064021 34.706 340 202 12 20 349 18 347 5.10e-50 175
Msa1267180 MtrunA17_Chr4g0075031 28.375 437 279 14 31 451 48 466 2.18e-49 177
Msa1267180 MtrunA17_Chr4g0038961 34.211 342 205 12 7 345 2 326 2.08e-48 169
Msa1267180 MtrunA17_Chr3g0119541 33.724 341 209 11 21 352 20 352 4.37e-48 169
Msa1267180 MtrunA17_Chr1g0174261 34.948 289 177 8 57 343 1 280 2.05e-47 167
Msa1267180 MtrunA17_Chr4g0043851 31.722 331 209 12 27 349 31 352 2.40e-47 169
Msa1267180 MtrunA17_Chr4g0038981 32.268 313 196 8 32 343 27 324 3.55e-47 166
Msa1267180 MtrunA17_Chr4g0026321 29.787 376 230 15 26 391 27 378 6.82e-47 167
Msa1267180 MtrunA17_Chr2g0321511 32.051 390 228 19 7 381 5 372 7.70e-47 167
Msa1267180 MtrunA17_Chr4g0038971 32.558 344 210 13 6 345 1 326 9.24e-47 165
Msa1267180 MtrunA17_Chr4g0038941 34.091 308 183 10 43 347 67 357 1.08e-46 166
Msa1267180 MtrunA17_Chr1g0189111 35.312 337 196 14 21 348 24 347 1.90e-46 167
Msa1267180 MtrunA17_Chr1g0155001 32.099 324 205 9 28 343 24 340 4.17e-46 166
Msa1267180 MtrunA17_Chr4g0039021 33.775 302 184 9 48 345 1 290 1.41e-45 161
Msa1267180 MtrunA17_Chr4g0039011 29.863 365 220 11 6 349 1 350 6.78e-43 155
Msa1267180 MtrunA17_Chr7g0250321 36.735 294 175 8 1 292 1 285 1.01e-41 150
Msa1267180 MtrunA17_Chr4g0043511 26.237 465 299 16 18 451 52 503 2.38e-41 155
Msa1267180 MtrunA17_Chr2g0285901 30.836 347 218 15 8 343 2 337 4.00e-40 149
Msa1267180 MtrunA17_Chr5g0436361 28.477 302 198 10 49 343 58 348 1.34e-27 114
Msa1267180 MtrunA17_Chr2g0294581 32.143 196 114 5 40 226 87 272 9.23e-21 92.4
Msa1267180 MtrunA17_Chr1g0213651 40.909 88 46 4 366 451 276 359 8.39e-12 66.6
Msa1267180 MtrunA17_Chr4g0018861 34.783 92 55 3 256 346 87 174 3.40e-11 63.2
Msa1267180 MtrunA17_Chr4g0018771 33.333 96 59 3 251 345 84 175 8.49e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1267180 AT5G20870.1 61.475 488 170 6 10 482 13 497 0.0 611
Msa1267180 AT4G31140.1 56.067 478 203 3 6 483 7 477 0.0 534
Msa1267180 AT5G58090.1 58.178 428 175 2 31 456 25 450 0.0 523
Msa1267180 AT2G19440.2 54.378 434 188 6 27 455 20 448 5.92e-162 468
Msa1267180 AT2G19440.1 54.378 434 188 6 27 455 20 448 5.92e-162 468
Msa1267180 AT1G64760.1 53.917 434 190 6 27 455 24 452 8.28e-161 465
Msa1267180 AT1G64760.2 53.917 434 190 6 27 455 24 452 8.28e-161 465
Msa1267180 AT5G64790.1 51.025 439 209 4 20 455 20 455 5.85e-157 455
Msa1267180 AT3G24330.1 49.781 456 218 7 9 458 21 471 1.95e-154 449
Msa1267180 AT3G04010.1 50.670 448 208 6 13 455 22 461 3.70e-152 443
Msa1267180 AT5G18220.1 49.458 461 218 8 4 455 5 459 4.42e-150 437
Msa1267180 AT4G17180.1 48.344 453 216 8 10 458 10 448 2.48e-147 430
Msa1267180 AT5G58480.1 42.694 438 244 5 31 467 29 460 1.90e-125 374
Msa1267180 AT2G01630.1 32.874 435 262 17 31 451 26 444 6.28e-66 221
Msa1267180 AT4G26830.1 32.543 464 271 18 10 451 8 451 1.04e-65 219
Msa1267180 AT4G26830.2 32.957 443 256 18 31 451 32 455 1.99e-65 218
Msa1267180 AT2G01630.3 32.787 427 259 16 31 443 26 438 2.05e-65 218
Msa1267180 AT5G55180.1 31.900 442 265 18 31 451 30 456 4.17e-65 218
Msa1267180 AT2G05790.1 32.026 459 268 17 24 451 23 468 9.53e-65 217
Msa1267180 AT5G55180.2 31.954 435 262 17 30 443 29 450 9.03e-64 214
Msa1267180 AT4G34480.1 33.784 444 272 14 10 443 10 441 1.02e-62 213
Msa1267180 AT5G24318.1 30.501 459 280 21 13 452 18 456 1.99e-60 205
Msa1267180 AT5G24318.2 30.667 450 275 20 13 443 18 449 1.70e-59 202
Msa1267180 AT2G16230.1 30.977 481 299 17 31 492 28 494 1.18e-58 202
Msa1267180 AT3G57270.1 37.942 311 181 8 39 347 39 339 3.25e-58 196
Msa1267180 AT1G66250.1 31.278 454 286 14 28 470 32 470 1.33e-57 199
Msa1267180 AT3G55430.1 33.182 440 253 21 31 451 32 449 1.58e-56 195
Msa1267180 AT1G11820.2 29.638 442 275 15 26 451 44 465 1.87e-56 196
Msa1267180 AT5G56590.1 29.978 447 281 16 39 469 38 468 1.44e-55 194
Msa1267180 AT3G23770.1 31.757 444 268 19 31 451 40 471 3.47e-55 192
Msa1267180 AT1G11820.3 29.263 434 273 14 26 443 44 459 3.58e-55 192
Msa1267180 AT3G13560.4 32.553 427 259 16 31 443 29 440 6.39e-55 192
Msa1267180 AT3G13560.1 32.553 427 259 16 31 443 29 440 6.39e-55 192
Msa1267180 AT3G13560.2 32.553 427 259 16 31 443 29 440 6.39e-55 192
Msa1267180 AT3G13560.5 32.553 427 259 16 31 443 29 440 6.39e-55 192
Msa1267180 AT3G13560.3 32.553 427 259 16 31 443 29 440 6.39e-55 192
Msa1267180 AT3G07320.1 32.311 424 258 18 46 451 43 455 6.93e-54 188
Msa1267180 AT4G16260.2 35.556 315 189 9 40 351 6 309 1.74e-52 180
Msa1267180 AT4G16260.1 35.556 315 189 9 40 351 35 338 2.27e-52 181
Msa1267180 AT4G14080.1 31.754 422 261 15 39 442 54 466 3.44e-52 184
Msa1267180 AT2G01630.2 33.531 337 204 12 30 355 25 352 1.71e-51 180
Msa1267180 AT3G57260.1 35.691 311 182 11 39 347 44 338 2.33e-51 178
Msa1267180 AT3G57260.2 35.691 311 182 11 39 347 60 354 2.99e-51 178
Msa1267180 AT4G34480.2 35.328 351 209 11 10 352 10 350 6.37e-51 177
Msa1267180 AT3G15800.1 33.526 346 214 11 16 352 30 368 1.68e-50 177
Msa1267180 AT1G32860.1 33.616 354 212 15 3 345 6 347 2.39e-50 177
Msa1267180 AT2G27500.2 34.441 331 201 11 27 349 28 350 2.13e-49 174
Msa1267180 AT2G27500.1 34.441 331 201 11 27 349 28 350 4.91e-49 173
Msa1267180 AT4G29360.1 28.160 451 276 14 39 453 39 477 2.26e-48 175
Msa1267180 AT4G29360.2 28.074 488 295 16 10 453 12 487 2.56e-48 175
Msa1267180 AT2G39640.1 30.508 472 287 21 10 466 12 457 4.37e-48 174
Msa1267180 AT5G24318.4 32.153 339 208 15 13 343 18 342 2.76e-47 168
Msa1267180 AT2G26600.1 33.134 335 204 12 28 352 34 358 1.29e-46 167
Msa1267180 AT1G30080.2 29.014 355 229 12 3 343 5 350 2.50e-44 160
Msa1267180 AT1G77780.1 33.887 301 183 11 39 336 36 323 3.27e-44 159
Msa1267180 AT1G30080.1 29.014 355 229 12 3 343 5 350 4.29e-44 160
Msa1267180 AT1G77790.1 32.565 347 216 11 5 345 7 341 5.63e-44 158
Msa1267180 AT4G34480.3 33.929 336 204 12 118 443 3 330 6.15e-44 159
Msa1267180 AT4G18340.2 30.084 359 225 15 3 348 6 351 3.62e-43 157
Msa1267180 AT4G18340.1 30.084 359 225 15 3 348 6 351 6.55e-43 157
Msa1267180 AT5G42720.1 31.909 351 220 12 6 347 6 346 1.44e-42 157
Msa1267180 AT3G61810.1 31.487 343 208 13 18 348 45 372 2.04e-42 155
Msa1267180 AT3G57240.1 32.476 311 188 10 41 347 48 340 6.36e-42 153
Msa1267180 AT5G42100.2 30.814 344 218 13 14 347 15 348 1.57e-41 154
Msa1267180 AT5G42100.1 30.814 344 218 13 14 347 15 348 2.12e-41 153
Msa1267180 AT1G11820.1 29.641 334 217 10 26 350 44 368 3.17e-40 149
Msa1267180 AT1G33220.1 29.321 324 214 10 3 321 9 322 1.21e-39 146
Msa1267180 AT5G20390.1 29.499 339 216 10 9 336 7 333 1.78e-39 146
Msa1267180 AT2G27500.3 34.050 279 170 9 78 349 1 272 1.02e-38 143
Msa1267180 AT5G24318.3 30.000 330 200 14 141 452 1 317 1.28e-38 143
Msa1267180 AT5G20560.1 29.560 318 195 10 30 336 36 335 1.48e-37 141
Msa1267180 AT5G20330.1 28.319 339 225 11 3 336 9 334 7.50e-36 136
Msa1267180 AT5G20340.1 29.841 315 197 13 30 336 45 343 1.42e-35 136
Msa1267180 AT2G26600.2 34.066 273 162 10 89 352 1 264 1.05e-34 132
Msa1267180 AT3G46570.1 30.029 343 217 13 10 343 12 340 2.39e-32 127
Msa1267180 AT3G55780.1 25.857 321 217 10 41 351 49 358 3.37e-26 110

Find 107 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATTCTTTAGGGAAATT+AGG 0.162535 8_2:-72299742 None:intergenic
TCAAAGAAAGCAAATTCTTT+AGG 0.203190 8_2:-72299751 None:intergenic
CTCATACTTTGTGCAAAATT+AGG 0.205482 8_2:-72300228 None:intergenic
AAAGAATTTGCTTTCTTTGA+TGG 0.208174 8_2:+72299754 Msa1267180:CDS
CCCTTGGCTTTGCTTGCAAT+TGG 0.238585 8_2:+72298756 Msa1267180:CDS
TTTGAGATCATGATTGATAT+TGG 0.242623 8_2:+72300447 Msa1267180:CDS
ATGTAAGAGGGCCGTTATTT+TGG 0.244858 8_2:-72299684 None:intergenic
CTGAAGGCTCTTGGGAATTC+TGG 0.246366 8_2:+72298881 Msa1267180:CDS
TCTTGGGAATTCTGGCATTC+AGG 0.280623 8_2:+72298889 Msa1267180:CDS
ATGAAATACCCTTTGAATCT+TGG 0.284657 8_2:+72300117 Msa1267180:CDS
CAAAGAAAGCAAATTCTTTA+GGG 0.289026 8_2:-72299750 None:intergenic
CCTTGGCTTTGCTTGCAATT+GGG 0.291854 8_2:+72298757 Msa1267180:CDS
AGGGCAAACATGTAAATTTC+AGG 0.292702 8_2:-72300018 None:intergenic
GAAATAACACACCATTGTTT+TGG 0.299535 8_2:-72300183 None:intergenic
GAATTCTGGCATTCAGGTTA+TGG 0.301145 8_2:+72298895 Msa1267180:CDS
TGGTAGACATCAGCATTTAA+AGG 0.322180 8_2:-72299580 None:intergenic
ATTTGATTATTGACATCATT+TGG 0.333649 8_2:-72299654 None:intergenic
TCTGCTGCCCCTGTAGTTGA+TGG 0.360256 8_2:+72299778 Msa1267180:CDS
ATATGAAGGCGGAAACATTT+TGG 0.364501 8_2:-72298985 None:intergenic
GGTAGACATCAGCATTTAAA+GGG 0.366946 8_2:-72299579 None:intergenic
TTGAGATCATGATTGATATT+GGG 0.371941 8_2:+72300448 Msa1267180:CDS
TCCTCTTCCAGCTCAAATAA+TGG 0.373231 8_2:+72298796 Msa1267180:CDS
TTGTATACTAAGCCAAAGTT+TGG 0.391479 8_2:+72298724 Msa1267180:CDS
ATTCCCCAATGTCTCTCAAA+TGG 0.397966 8_2:-72300075 None:intergenic
CCCATGGCACTGAAGGCTCT+TGG 0.409961 8_2:+72298872 Msa1267180:CDS
CTTGGCTTTGCTTGCAATTG+GGG 0.413284 8_2:+72298758 Msa1267180:CDS
AAATCACTAGTTGGTGCTAA+AGG 0.413423 8_2:+72300147 Msa1267180:CDS
AGCTTCACCATTATTTGAGC+TGG 0.418137 8_2:-72298803 None:intergenic
CCATGGCACTGAAGGCTCTT+GGG 0.419662 8_2:+72298873 Msa1267180:CDS
AATCACTAGTTGGTGCTAAA+GGG 0.420833 8_2:+72300148 Msa1267180:CDS
TGGCCCATTTGAGAGACATT+GGG 0.432301 8_2:+72300071 Msa1267180:CDS
AAAGATGCATGTCAATTCAA+TGG 0.443198 8_2:+72300372 Msa1267180:CDS
TTCATCTCAAGCAAATGTAA+TGG 0.443401 8_2:+72300203 Msa1267180:CDS
GGGTAGATGTTAAATGTAAG+AGG 0.443692 8_2:-72299697 None:intergenic
TAATATGTATTATCAAAGAA+TGG 0.448941 8_2:+72300341 Msa1267180:CDS
TGGCATACCCAATGACCTCT+TGG 0.450780 8_2:+72298919 Msa1267180:CDS
AATGTTATCATTGGTGAAGT+TGG 0.454844 8_2:+72299883 Msa1267180:CDS
GCATTTGATGTTCCATCAGT+TGG 0.457755 8_2:-72299910 None:intergenic
AGCTGATCCCATGGCACTGA+AGG 0.462871 8_2:+72298865 Msa1267180:CDS
CAAGCAGCCCTTATAAAAGC+AGG 0.466267 8_2:+72299529 Msa1267180:CDS
GGTTCAATGAATGTTATCAT+TGG 0.468945 8_2:+72299874 Msa1267180:CDS
AAGTGAATCCAAGAGGTCAT+TGG 0.477036 8_2:-72298927 None:intergenic
AGTGAATCCAAGAGGTCATT+GGG 0.485799 8_2:-72298926 None:intergenic
CTGGCCCATTTGAGAGACAT+TGG 0.488422 8_2:+72300070 Msa1267180:CDS
TCAGCATCAAGGCTTAGAAA+AGG 0.491244 8_2:-72299718 None:intergenic
AGTTTGGCAAAAGGTACCCT+TGG 0.491787 8_2:+72298740 Msa1267180:CDS
TTCCCCAATGTCTCTCAAAT+GGG 0.492714 8_2:-72300074 None:intergenic
ACCATTATTTGAGCTGGAAG+AGG 0.496228 8_2:-72298797 None:intergenic
CCCAAGAGCCTTCAGTGCCA+TGG 0.497598 8_2:-72298873 None:intergenic
GCTCCTGGCTCTTCTTGTAG+TGG 0.498871 8_2:+72300285 Msa1267180:CDS
GATTGTACATCTCTTGCTCC+TGG 0.501491 8_2:+72300270 Msa1267180:CDS
AAATTTCTTAGCCAAAATAA+CGG 0.503273 8_2:+72299673 Msa1267180:CDS
AGTGACACTGGTCTTCCATC+AGG 0.505930 8_2:+72299604 Msa1267180:CDS
GATATGGAACCATCAACTAC+AGG 0.506108 8_2:-72299787 None:intergenic
TACCCTTTGAATCTTGGTGG+TGG 0.509344 8_2:+72300123 Msa1267180:CDS
CAATGTCTCTCAAATGGGCC+AGG 0.515554 8_2:-72300069 None:intergenic
GCCCTTATAAAAGCAGGGTT+AGG 0.517583 8_2:+72299535 Msa1267180:CDS
TTTCCACCACCAAGATTCAA+AGG 0.519584 8_2:-72300126 None:intergenic
TCTGGCATTCAGGTTATGGT+TGG 0.523834 8_2:+72298899 Msa1267180:CDS
GGAAATTAGGATCAGCATCA+AGG 0.525105 8_2:-72299729 None:intergenic
ATGGAAGACCAGTGTCACTT+TGG 0.528047 8_2:-72299600 None:intergenic
CTAAGCCAAAGTTTGGCAAA+AGG 0.528146 8_2:+72298731 Msa1267180:CDS
ATTCCCAGGTATGTTGCAGT+TGG 0.531912 8_2:+72299436 Msa1267180:intron
AAAAGCACGTACTAAAACGT+TGG 0.532946 8_2:-72298691 None:intergenic
TGTAGTGGTTTAGACACAAA+GGG 0.535458 8_2:+72300300 Msa1267180:CDS
CAGCATCAAGGCTTAGAAAA+GGG 0.536287 8_2:-72299717 None:intergenic
CCCAATTGCAAGCAAAGCCA+AGG 0.538896 8_2:-72298757 None:intergenic
ATGTAAATTTCAGGTGGGGT+AGG 0.542978 8_2:-72300009 None:intergenic
AGAGTACATAATGGTCATGC+TGG 0.544525 8_2:+72300518 Msa1267180:CDS
CCAAGAGCCTTCAGTGCCAT+GGG 0.544609 8_2:-72298872 None:intergenic
AATTGGATTAGAGTACATAA+TGG 0.544687 8_2:+72300509 Msa1267180:CDS
AGACTATACAAATAGAGATA+AGG 0.546510 8_2:-72300559 None:intergenic
TTCCACCACCAAGATTCAAA+GGG 0.549004 8_2:-72300125 None:intergenic
GGTCTAAAGTGTCCACCTGA+TGG 0.549481 8_2:-72299619 None:intergenic
TGCAATAGCAGCATTGACAT+TGG 0.551848 8_2:-72298954 None:intergenic
AGTGCTCAAAGATTTAATCA+AGG 0.558025 8_2:+72299943 Msa1267180:CDS
TTAAATATTTGCCAAAACAA+TGG 0.559751 8_2:+72300172 Msa1267180:CDS
AGAAGGTGAAGGATCAATGT+TGG 0.571619 8_2:-72300409 None:intergenic
ATGTCAATGCTGCTATTGCA+TGG 0.571781 8_2:+72298957 Msa1267180:CDS
ATCACTAGTTGGTGCTAAAG+GGG 0.581029 8_2:+72300149 Msa1267180:CDS
AAATACCCTTTGAATCTTGG+TGG 0.581742 8_2:+72300120 Msa1267180:CDS
ATTGATCCTTCACCTTCTCA+AGG 0.584331 8_2:+72300414 Msa1267180:CDS
GTGAAGCTTATGAAAGACAA+TGG 0.584491 8_2:+72298818 Msa1267180:CDS
ATATGGAACCATCAACTACA+GGG 0.586294 8_2:-72299786 None:intergenic
TTGTAGTGGTTTAGACACAA+AGG 0.587590 8_2:+72300299 Msa1267180:CDS
GCAAACATGTAAATTTCAGG+TGG 0.588739 8_2:-72300015 None:intergenic
GGTGGTGGAAAATCACTAGT+TGG 0.601318 8_2:+72300138 Msa1267180:CDS
CAATGCTGCTATTGCATGGG+TGG 0.601494 8_2:+72298961 Msa1267180:CDS
TTATCATTGGTGAAGTTGGT+TGG 0.606188 8_2:+72299887 Msa1267180:CDS
CAAACATGTAAATTTCAGGT+GGG 0.606459 8_2:-72300014 None:intergenic
GGTAGATGTTAAATGTAAGA+GGG 0.611599 8_2:-72299696 None:intergenic
AAATGACAACTACCTTGAGA+AGG 0.612080 8_2:-72300426 None:intergenic
GATGTCTACCAAAGTGACAC+TGG 0.613469 8_2:+72299592 Msa1267180:CDS
AAACCACTACAAGAAGAGCC+AGG 0.623694 8_2:-72300288 None:intergenic
AAGCAGCCCTTATAAAAGCA+GGG 0.628845 8_2:+72299530 Msa1267180:CDS
GAAGTTGGTTGGCCAACTGA+TGG 0.629204 8_2:+72299898 Msa1267180:CDS
GGCCCATTTGAGAGACATTG+GGG 0.629502 8_2:+72300072 Msa1267180:CDS
AAACATGTAAATTTCAGGTG+GGG 0.634074 8_2:-72300013 None:intergenic
TGTCAATGCTGCTATTGCAT+GGG 0.635182 8_2:+72298958 Msa1267180:CDS
GACACTGGTCTTCCATCAGG+TGG 0.637692 8_2:+72299607 Msa1267180:CDS
GTTGTTTGAAGCTGATCCCA+TGG 0.646484 8_2:+72298856 Msa1267180:CDS
GTAGACATCAGCATTTAAAG+GGG 0.650986 8_2:-72299578 None:intergenic
CAACTACCTTGAGAAGGTGA+AGG 0.652284 8_2:-72300420 None:intergenic
CCAATTGCAAGCAAAGCCAA+GGG 0.668441 8_2:-72298756 None:intergenic
GAGATACAAGTAGCACAGTG+TGG 0.710703 8_2:-72300726 None:intergenic
TGGAAGCAAGTGAATCCAAG+AGG 0.710711 8_2:-72298934 None:intergenic
TATGGAACCATCAACTACAG+GGG 0.718530 8_2:-72299785 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACACAATATTTTTTATTTTT+TGG + chr8_2:72300619-72300638 Msa1267180:three_prime_UTR 10.0%
!!! ACACAATATTTTTTATTTTT+TGG + chr8_2:72300619-72300638 Msa1267180:three_prime_UTR 10.0%
!!! AAGTAACATTAATGTTTTAT+TGG + chr8_2:72299264-72299283 Msa1267180:intron 15.0%
!! TAATATGTATTATCAAAGAA+TGG + chr8_2:72300341-72300360 Msa1267180:CDS 15.0%
!!! ATCAATTACACATTTATTTT+TGG - chr8_2:72300667-72300686 None:intergenic 15.0%
!!! AAGTAACATTAATGTTTTAT+TGG + chr8_2:72299264-72299283 Msa1267180:intron 15.0%
!! TAATATGTATTATCAAAGAA+TGG + chr8_2:72300341-72300360 Msa1267180:CDS 15.0%
!!! ATCAATTACACATTTATTTT+TGG - chr8_2:72300667-72300686 None:intergenic 15.0%
!!! TTGATTTGACACAAAAAATT+AGG + chr8_2:72299076-72299095 Msa1267180:intron 20.0%
!! TGATTTGACACAAAAAATTA+GGG + chr8_2:72299077-72299096 Msa1267180:intron 20.0%
!! GAATTAATTGTACAAAACAT+TGG - chr8_2:72299420-72299439 None:intergenic 20.0%
!! ATTTGATTATTGACATCATT+TGG - chr8_2:72299657-72299676 None:intergenic 20.0%
!! AAATTTCTTAGCCAAAATAA+CGG + chr8_2:72299673-72299692 Msa1267180:CDS 20.0%
!! AAAATTTGCATCAAAAACAT+TGG - chr8_2:72299818-72299837 None:intergenic 20.0%
!!! TTTTAAATCCTCATCTAAAA+GGG - chr8_2:72300040-72300059 None:intergenic 20.0%
!!! TTTTTAAATCCTCATCTAAA+AGG - chr8_2:72300041-72300060 None:intergenic 20.0%
!! TTAAATATTTGCCAAAACAA+TGG + chr8_2:72300172-72300191 Msa1267180:CDS 20.0%
!!! TTGATTTGACACAAAAAATT+AGG + chr8_2:72299076-72299095 Msa1267180:intron 20.0%
!! TGATTTGACACAAAAAATTA+GGG + chr8_2:72299077-72299096 Msa1267180:intron 20.0%
!! GAATTAATTGTACAAAACAT+TGG - chr8_2:72299420-72299439 None:intergenic 20.0%
!! ATTTGATTATTGACATCATT+TGG - chr8_2:72299657-72299676 None:intergenic 20.0%
!! AAATTTCTTAGCCAAAATAA+CGG + chr8_2:72299673-72299692 Msa1267180:CDS 20.0%
!! AAAATTTGCATCAAAAACAT+TGG - chr8_2:72299818-72299837 None:intergenic 20.0%
!!! TTTTAAATCCTCATCTAAAA+GGG - chr8_2:72300040-72300059 None:intergenic 20.0%
!!! TTTTTAAATCCTCATCTAAA+AGG - chr8_2:72300041-72300060 None:intergenic 20.0%
!! TTAAATATTTGCCAAAACAA+TGG + chr8_2:72300172-72300191 Msa1267180:CDS 20.0%
! AGGAAGAAAAAAAGACAATA+TGG + chr8_2:72298664-72298683 Msa1267180:exon 25.0%
! GGAAGAAAAAAAGACAATAT+GGG + chr8_2:72298665-72298684 Msa1267180:exon 25.0%
! AAACGACTTATAATTTGAGA+CGG + chr8_2:72299332-72299351 Msa1267180:intron 25.0%
!!! GCTTTTCTAAAAACATACAA+TGG + chr8_2:72299466-72299485 Msa1267180:CDS 25.0%
! CAAAGAAAGCAAATTCTTTA+GGG - chr8_2:72299753-72299772 None:intergenic 25.0%
! TCAAAGAAAGCAAATTCTTT+AGG - chr8_2:72299754-72299773 None:intergenic 25.0%
!! AAAGAATTTGCTTTCTTTGA+TGG + chr8_2:72299754-72299773 Msa1267180:CDS 25.0%
! AAAAACATTGGTGTAAGATA+TGG - chr8_2:72299806-72299825 None:intergenic 25.0%
! ATTTCAGCTCTTGAAAAAAA+TGG + chr8_2:72299847-72299866 Msa1267180:CDS 25.0%
!!! GATTTAAAAAGTATTGATCC+TGG + chr8_2:72300051-72300070 Msa1267180:CDS 25.0%
!! TTTGAGATCATGATTGATAT+TGG + chr8_2:72300447-72300466 Msa1267180:CDS 25.0%
! TTGAGATCATGATTGATATT+GGG + chr8_2:72300448-72300467 Msa1267180:CDS 25.0%
!! ATGTACTCTAATCCAATTTT+TGG - chr8_2:72300507-72300526 None:intergenic 25.0%
!! AATTGGATTAGAGTACATAA+TGG + chr8_2:72300509-72300528 Msa1267180:CDS 25.0%
! AGACTATACAAATAGAGATA+AGG - chr8_2:72300562-72300581 None:intergenic 25.0%
!!! GTGACTCATTTTTTAATTCT+TGG + chr8_2:72300702-72300721 Msa1267180:three_prime_UTR 25.0%
! AGGAAGAAAAAAAGACAATA+TGG + chr8_2:72298664-72298683 Msa1267180:exon 25.0%
! GGAAGAAAAAAAGACAATAT+GGG + chr8_2:72298665-72298684 Msa1267180:exon 25.0%
! AAACGACTTATAATTTGAGA+CGG + chr8_2:72299332-72299351 Msa1267180:intron 25.0%
!!! GCTTTTCTAAAAACATACAA+TGG + chr8_2:72299466-72299485 Msa1267180:CDS 25.0%
! CAAAGAAAGCAAATTCTTTA+GGG - chr8_2:72299753-72299772 None:intergenic 25.0%
! TCAAAGAAAGCAAATTCTTT+AGG - chr8_2:72299754-72299773 None:intergenic 25.0%
!! AAAGAATTTGCTTTCTTTGA+TGG + chr8_2:72299754-72299773 Msa1267180:CDS 25.0%
! AAAAACATTGGTGTAAGATA+TGG - chr8_2:72299806-72299825 None:intergenic 25.0%
! ATTTCAGCTCTTGAAAAAAA+TGG + chr8_2:72299847-72299866 Msa1267180:CDS 25.0%
!!! GATTTAAAAAGTATTGATCC+TGG + chr8_2:72300051-72300070 Msa1267180:CDS 25.0%
!! TTTGAGATCATGATTGATAT+TGG + chr8_2:72300447-72300466 Msa1267180:CDS 25.0%
! TTGAGATCATGATTGATATT+GGG + chr8_2:72300448-72300467 Msa1267180:CDS 25.0%
!! ATGTACTCTAATCCAATTTT+TGG - chr8_2:72300507-72300526 None:intergenic 25.0%
!! AATTGGATTAGAGTACATAA+TGG + chr8_2:72300509-72300528 Msa1267180:CDS 25.0%
! AGACTATACAAATAGAGATA+AGG - chr8_2:72300562-72300581 None:intergenic 25.0%
!!! GTGACTCATTTTTTAATTCT+TGG + chr8_2:72300702-72300721 Msa1267180:three_prime_UTR 25.0%
TCAAAAATAGAAGCAAGTCA+AGG + chr8_2:72298644-72298663 Msa1267180:five_prime_UTR 30.0%
!! TTTTAGTACGTGCTTTTTGT+TGG + chr8_2:72298697-72298716 Msa1267180:CDS 30.0%
TTGTATACTAAGCCAAAGTT+TGG + chr8_2:72298724-72298743 Msa1267180:CDS 30.0%
!! AACCCCATTTTTAGATATGA+AGG - chr8_2:72299002-72299021 None:intergenic 30.0%
!! CTAAAAATGGGGTTGATATA+AGG + chr8_2:72299008-72299027 Msa1267180:CDS 30.0%
! ACTTATAATTTGAGACGGAT+GGG + chr8_2:72299337-72299356 Msa1267180:intron 30.0%
ATAAGGATAATAATCTCACG+TGG + chr8_2:72299369-72299388 Msa1267180:intron 30.0%
! GTTTTGTACAATTAATTCCC+AGG + chr8_2:72299422-72299441 Msa1267180:intron 30.0%
!!! ATCATTTGGTTTTGAATGTC+TGG - chr8_2:72299643-72299662 None:intergenic 30.0%
GGTAGATGTTAAATGTAAGA+GGG - chr8_2:72299699-72299718 None:intergenic 30.0%
! GCAAATTCTTTAGGGAAATT+AGG - chr8_2:72299745-72299764 None:intergenic 30.0%
! GCTCTTGAAAAAAATGGTTT+TGG + chr8_2:72299853-72299872 Msa1267180:CDS 30.0%
GGTTCAATGAATGTTATCAT+TGG + chr8_2:72299874-72299893 Msa1267180:CDS 30.0%
AATGTTATCATTGGTGAAGT+TGG + chr8_2:72299883-72299902 Msa1267180:CDS 30.0%
AGTGCTCAAAGATTTAATCA+AGG + chr8_2:72299943-72299962 Msa1267180:CDS 30.0%
GATAGAATAGTGAAAAAGCA+AGG + chr8_2:72299973-72299992 Msa1267180:CDS 30.0%
! AAACATGTAAATTTCAGGTG+GGG - chr8_2:72300016-72300035 None:intergenic 30.0%
! CAAACATGTAAATTTCAGGT+GGG - chr8_2:72300017-72300036 None:intergenic 30.0%
! TGGGGAATTTTCAATTTTGA+TGG + chr8_2:72300090-72300109 Msa1267180:CDS 30.0%
ATGAAATACCCTTTGAATCT+TGG + chr8_2:72300117-72300136 Msa1267180:CDS 30.0%
! GAAATAACACACCATTGTTT+TGG - chr8_2:72300186-72300205 None:intergenic 30.0%
TTCATCTCAAGCAAATGTAA+TGG + chr8_2:72300203-72300222 Msa1267180:CDS 30.0%
CTCATACTTTGTGCAAAATT+AGG - chr8_2:72300231-72300250 None:intergenic 30.0%
AAAGATGCATGTCAATTCAA+TGG + chr8_2:72300372-72300391 Msa1267180:CDS 30.0%
TCAAAAATAGAAGCAAGTCA+AGG + chr8_2:72298644-72298663 Msa1267180:five_prime_UTR 30.0%
!! TTTTAGTACGTGCTTTTTGT+TGG + chr8_2:72298697-72298716 Msa1267180:CDS 30.0%
TTGTATACTAAGCCAAAGTT+TGG + chr8_2:72298724-72298743 Msa1267180:CDS 30.0%
!! AACCCCATTTTTAGATATGA+AGG - chr8_2:72299002-72299021 None:intergenic 30.0%
!! CTAAAAATGGGGTTGATATA+AGG + chr8_2:72299008-72299027 Msa1267180:CDS 30.0%
! ACTTATAATTTGAGACGGAT+GGG + chr8_2:72299337-72299356 Msa1267180:intron 30.0%
ATAAGGATAATAATCTCACG+TGG + chr8_2:72299369-72299388 Msa1267180:intron 30.0%
! GTTTTGTACAATTAATTCCC+AGG + chr8_2:72299422-72299441 Msa1267180:intron 30.0%
!!! ATCATTTGGTTTTGAATGTC+TGG - chr8_2:72299643-72299662 None:intergenic 30.0%
GGTAGATGTTAAATGTAAGA+GGG - chr8_2:72299699-72299718 None:intergenic 30.0%
! GCAAATTCTTTAGGGAAATT+AGG - chr8_2:72299745-72299764 None:intergenic 30.0%
! GCTCTTGAAAAAAATGGTTT+TGG + chr8_2:72299853-72299872 Msa1267180:CDS 30.0%
GGTTCAATGAATGTTATCAT+TGG + chr8_2:72299874-72299893 Msa1267180:CDS 30.0%
AATGTTATCATTGGTGAAGT+TGG + chr8_2:72299883-72299902 Msa1267180:CDS 30.0%
AGTGCTCAAAGATTTAATCA+AGG + chr8_2:72299943-72299962 Msa1267180:CDS 30.0%
GATAGAATAGTGAAAAAGCA+AGG + chr8_2:72299973-72299992 Msa1267180:CDS 30.0%
! AAACATGTAAATTTCAGGTG+GGG - chr8_2:72300016-72300035 None:intergenic 30.0%
! CAAACATGTAAATTTCAGGT+GGG - chr8_2:72300017-72300036 None:intergenic 30.0%
! TGGGGAATTTTCAATTTTGA+TGG + chr8_2:72300090-72300109 Msa1267180:CDS 30.0%
ATGAAATACCCTTTGAATCT+TGG + chr8_2:72300117-72300136 Msa1267180:CDS 30.0%
! GAAATAACACACCATTGTTT+TGG - chr8_2:72300186-72300205 None:intergenic 30.0%
TTCATCTCAAGCAAATGTAA+TGG + chr8_2:72300203-72300222 Msa1267180:CDS 30.0%
CTCATACTTTGTGCAAAATT+AGG - chr8_2:72300231-72300250 None:intergenic 30.0%
AAAGATGCATGTCAATTCAA+TGG + chr8_2:72300372-72300391 Msa1267180:CDS 30.0%
! AAAAGCACGTACTAAAACGT+TGG - chr8_2:72298694-72298713 None:intergenic 35.0%
GTGAAGCTTATGAAAGACAA+TGG + chr8_2:72298818-72298837 Msa1267180:CDS 35.0%
! ATATGAAGGCGGAAACATTT+TGG - chr8_2:72298988-72299007 None:intergenic 35.0%
TCCGCCTTCATATCTAAAAA+TGG + chr8_2:72298995-72299014 Msa1267180:CDS 35.0%
!! CCCATTTTTAGATATGAAGG+CGG - chr8_2:72298999-72299018 None:intergenic 35.0%
CCGCCTTCATATCTAAAAAT+GGG + chr8_2:72298996-72299015 Msa1267180:CDS 35.0%
CGCCTTCATATCTAAAAATG+GGG + chr8_2:72298997-72299016 Msa1267180:CDS 35.0%
TGACCAAGGTAGTAATGAAA+AGG - chr8_2:72299055-72299074 None:intergenic 35.0%
! GACTTATAATTTGAGACGGA+TGG + chr8_2:72299336-72299355 Msa1267180:intron 35.0%
! CTTATAATTTGAGACGGATG+GGG + chr8_2:72299338-72299357 Msa1267180:intron 35.0%
!!! GCTTGAATGTTTTTTATGGC+AGG - chr8_2:72299514-72299533 None:intergenic 35.0%
!!! GGCTGCTTGAATGTTTTTTA+TGG - chr8_2:72299518-72299537 None:intergenic 35.0%
GTAGACATCAGCATTTAAAG+GGG - chr8_2:72299581-72299600 None:intergenic 35.0%
GGTAGACATCAGCATTTAAA+GGG - chr8_2:72299582-72299601 None:intergenic 35.0%
TGGTAGACATCAGCATTTAA+AGG - chr8_2:72299583-72299602 None:intergenic 35.0%
GGGTAGATGTTAAATGTAAG+AGG - chr8_2:72299700-72299719 None:intergenic 35.0%
ATATGGAACCATCAACTACA+GGG - chr8_2:72299789-72299808 None:intergenic 35.0%
! TTATCATTGGTGAAGTTGGT+TGG + chr8_2:72299887-72299906 Msa1267180:CDS 35.0%
GCAAACATGTAAATTTCAGG+TGG - chr8_2:72300018-72300037 None:intergenic 35.0%
AGGGCAAACATGTAAATTTC+AGG - chr8_2:72300021-72300040 None:intergenic 35.0%
AAATACCCTTTGAATCTTGG+TGG + chr8_2:72300120-72300139 Msa1267180:CDS 35.0%
!! AAATCACTAGTTGGTGCTAA+AGG + chr8_2:72300147-72300166 Msa1267180:CDS 35.0%
!! AATCACTAGTTGGTGCTAAA+GGG + chr8_2:72300148-72300167 Msa1267180:CDS 35.0%
TTGTAGTGGTTTAGACACAA+AGG + chr8_2:72300299-72300318 Msa1267180:CDS 35.0%
TGTAGTGGTTTAGACACAAA+GGG + chr8_2:72300300-72300319 Msa1267180:CDS 35.0%
AAATGACAACTACCTTGAGA+AGG - chr8_2:72300429-72300448 None:intergenic 35.0%
! TCTTTTGCTGCACCAAAAAT+TGG + chr8_2:72300492-72300511 Msa1267180:CDS 35.0%
! AAAAGCACGTACTAAAACGT+TGG - chr8_2:72298694-72298713 None:intergenic 35.0%
GTGAAGCTTATGAAAGACAA+TGG + chr8_2:72298818-72298837 Msa1267180:CDS 35.0%
! ATATGAAGGCGGAAACATTT+TGG - chr8_2:72298988-72299007 None:intergenic 35.0%
TCCGCCTTCATATCTAAAAA+TGG + chr8_2:72298995-72299014 Msa1267180:CDS 35.0%
!! CCCATTTTTAGATATGAAGG+CGG - chr8_2:72298999-72299018 None:intergenic 35.0%
CCGCCTTCATATCTAAAAAT+GGG + chr8_2:72298996-72299015 Msa1267180:CDS 35.0%
CGCCTTCATATCTAAAAATG+GGG + chr8_2:72298997-72299016 Msa1267180:CDS 35.0%
TGACCAAGGTAGTAATGAAA+AGG - chr8_2:72299055-72299074 None:intergenic 35.0%
! GACTTATAATTTGAGACGGA+TGG + chr8_2:72299336-72299355 Msa1267180:intron 35.0%
! CTTATAATTTGAGACGGATG+GGG + chr8_2:72299338-72299357 Msa1267180:intron 35.0%
!!! GCTTGAATGTTTTTTATGGC+AGG - chr8_2:72299514-72299533 None:intergenic 35.0%
!!! GGCTGCTTGAATGTTTTTTA+TGG - chr8_2:72299518-72299537 None:intergenic 35.0%
GTAGACATCAGCATTTAAAG+GGG - chr8_2:72299581-72299600 None:intergenic 35.0%
GGTAGACATCAGCATTTAAA+GGG - chr8_2:72299582-72299601 None:intergenic 35.0%
TGGTAGACATCAGCATTTAA+AGG - chr8_2:72299583-72299602 None:intergenic 35.0%
GGGTAGATGTTAAATGTAAG+AGG - chr8_2:72299700-72299719 None:intergenic 35.0%
ATATGGAACCATCAACTACA+GGG - chr8_2:72299789-72299808 None:intergenic 35.0%
! TTATCATTGGTGAAGTTGGT+TGG + chr8_2:72299887-72299906 Msa1267180:CDS 35.0%
GCAAACATGTAAATTTCAGG+TGG - chr8_2:72300018-72300037 None:intergenic 35.0%
AGGGCAAACATGTAAATTTC+AGG - chr8_2:72300021-72300040 None:intergenic 35.0%
AAATACCCTTTGAATCTTGG+TGG + chr8_2:72300120-72300139 Msa1267180:CDS 35.0%
!! AAATCACTAGTTGGTGCTAA+AGG + chr8_2:72300147-72300166 Msa1267180:CDS 35.0%
!! AATCACTAGTTGGTGCTAAA+GGG + chr8_2:72300148-72300167 Msa1267180:CDS 35.0%
TTGTAGTGGTTTAGACACAA+AGG + chr8_2:72300299-72300318 Msa1267180:CDS 35.0%
TGTAGTGGTTTAGACACAAA+GGG + chr8_2:72300300-72300319 Msa1267180:CDS 35.0%
AAATGACAACTACCTTGAGA+AGG - chr8_2:72300429-72300448 None:intergenic 35.0%
! TCTTTTGCTGCACCAAAAAT+TGG + chr8_2:72300492-72300511 Msa1267180:CDS 35.0%
CTAAGCCAAAGTTTGGCAAA+AGG + chr8_2:72298731-72298750 Msa1267180:CDS 40.0%
TCCTCTTCCAGCTCAAATAA+TGG + chr8_2:72298796-72298815 Msa1267180:CDS 40.0%
ACCATTATTTGAGCTGGAAG+AGG - chr8_2:72298800-72298819 None:intergenic 40.0%
AGCTTCACCATTATTTGAGC+TGG - chr8_2:72298806-72298825 None:intergenic 40.0%
! GAATTCTGGCATTCAGGTTA+TGG + chr8_2:72298895-72298914 Msa1267180:CDS 40.0%
AGTGAATCCAAGAGGTCATT+GGG - chr8_2:72298929-72298948 None:intergenic 40.0%
AAGTGAATCCAAGAGGTCAT+TGG - chr8_2:72298930-72298949 None:intergenic 40.0%
!! TGCAATAGCAGCATTGACAT+TGG - chr8_2:72298957-72298976 None:intergenic 40.0%
ATGTCAATGCTGCTATTGCA+TGG + chr8_2:72298957-72298976 Msa1267180:CDS 40.0%
TGTCAATGCTGCTATTGCAT+GGG + chr8_2:72298958-72298977 Msa1267180:CDS 40.0%
CCAAGGTAGTAATGAAAAGG+AGG - chr8_2:72299052-72299071 None:intergenic 40.0%
! CCTCCTTTTCATTACTACCT+TGG + chr8_2:72299049-72299068 Msa1267180:intron 40.0%
TGTGTCAAATCAAGTGACCA+AGG - chr8_2:72299069-72299088 None:intergenic 40.0%
! CGGATGGGGTACTTATTATA+AGG + chr8_2:72299352-72299371 Msa1267180:intron 40.0%
TTACCAACTGCAACATACCT+GGG - chr8_2:72299442-72299461 None:intergenic 40.0%
ATTACCAACTGCAACATACC+TGG - chr8_2:72299443-72299462 None:intergenic 40.0%
AAGCAGCCCTTATAAAAGCA+GGG + chr8_2:72299530-72299549 Msa1267180:CDS 40.0%
!! GCCTAACCCTGCTTTTATAA+GGG - chr8_2:72299539-72299558 None:intergenic 40.0%
!! TGCCTAACCCTGCTTTTATA+AGG - chr8_2:72299540-72299559 None:intergenic 40.0%
! ATGTAAGAGGGCCGTTATTT+TGG - chr8_2:72299687-72299706 None:intergenic 40.0%
CAGCATCAAGGCTTAGAAAA+GGG - chr8_2:72299720-72299739 None:intergenic 40.0%
TCAGCATCAAGGCTTAGAAA+AGG - chr8_2:72299721-72299740 None:intergenic 40.0%
GGAAATTAGGATCAGCATCA+AGG - chr8_2:72299732-72299751 None:intergenic 40.0%
TATGGAACCATCAACTACAG+GGG - chr8_2:72299788-72299807 None:intergenic 40.0%
GATATGGAACCATCAACTAC+AGG - chr8_2:72299790-72299809 None:intergenic 40.0%
GCATTTGATGTTCCATCAGT+TGG - chr8_2:72299913-72299932 None:intergenic 40.0%
! ATGTAAATTTCAGGTGGGGT+AGG - chr8_2:72300012-72300031 None:intergenic 40.0%
! CATGTTTGCCCTTTTAGATG+AGG + chr8_2:72300029-72300048 Msa1267180:CDS 40.0%
TTCCCCAATGTCTCTCAAAT+GGG - chr8_2:72300077-72300096 None:intergenic 40.0%
ATTCCCCAATGTCTCTCAAA+TGG - chr8_2:72300078-72300097 None:intergenic 40.0%
TTCCACCACCAAGATTCAAA+GGG - chr8_2:72300128-72300147 None:intergenic 40.0%
TTTCCACCACCAAGATTCAA+AGG - chr8_2:72300129-72300148 None:intergenic 40.0%
!! ATCACTAGTTGGTGCTAAAG+GGG + chr8_2:72300149-72300168 Msa1267180:CDS 40.0%
AGAAGGTGAAGGATCAATGT+TGG - chr8_2:72300412-72300431 None:intergenic 40.0%
ATTGATCCTTCACCTTCTCA+AGG + chr8_2:72300414-72300433 Msa1267180:CDS 40.0%
!! TTTTGGTGCAGCAAAAGAAG+TGG - chr8_2:72300490-72300509 None:intergenic 40.0%
AGAGTACATAATGGTCATGC+TGG + chr8_2:72300518-72300537 Msa1267180:CDS 40.0%
CTAAGCCAAAGTTTGGCAAA+AGG + chr8_2:72298731-72298750 Msa1267180:CDS 40.0%
TCCTCTTCCAGCTCAAATAA+TGG + chr8_2:72298796-72298815 Msa1267180:CDS 40.0%
ACCATTATTTGAGCTGGAAG+AGG - chr8_2:72298800-72298819 None:intergenic 40.0%
AGCTTCACCATTATTTGAGC+TGG - chr8_2:72298806-72298825 None:intergenic 40.0%
! GAATTCTGGCATTCAGGTTA+TGG + chr8_2:72298895-72298914 Msa1267180:CDS 40.0%
AGTGAATCCAAGAGGTCATT+GGG - chr8_2:72298929-72298948 None:intergenic 40.0%
AAGTGAATCCAAGAGGTCAT+TGG - chr8_2:72298930-72298949 None:intergenic 40.0%
!! TGCAATAGCAGCATTGACAT+TGG - chr8_2:72298957-72298976 None:intergenic 40.0%
ATGTCAATGCTGCTATTGCA+TGG + chr8_2:72298957-72298976 Msa1267180:CDS 40.0%
TGTCAATGCTGCTATTGCAT+GGG + chr8_2:72298958-72298977 Msa1267180:CDS 40.0%
CCAAGGTAGTAATGAAAAGG+AGG - chr8_2:72299052-72299071 None:intergenic 40.0%
! CCTCCTTTTCATTACTACCT+TGG + chr8_2:72299049-72299068 Msa1267180:intron 40.0%
TGTGTCAAATCAAGTGACCA+AGG - chr8_2:72299069-72299088 None:intergenic 40.0%
! CGGATGGGGTACTTATTATA+AGG + chr8_2:72299352-72299371 Msa1267180:intron 40.0%
TTACCAACTGCAACATACCT+GGG - chr8_2:72299442-72299461 None:intergenic 40.0%
ATTACCAACTGCAACATACC+TGG - chr8_2:72299443-72299462 None:intergenic 40.0%
AAGCAGCCCTTATAAAAGCA+GGG + chr8_2:72299530-72299549 Msa1267180:CDS 40.0%
!! GCCTAACCCTGCTTTTATAA+GGG - chr8_2:72299539-72299558 None:intergenic 40.0%
!! TGCCTAACCCTGCTTTTATA+AGG - chr8_2:72299540-72299559 None:intergenic 40.0%
! ATGTAAGAGGGCCGTTATTT+TGG - chr8_2:72299687-72299706 None:intergenic 40.0%
CAGCATCAAGGCTTAGAAAA+GGG - chr8_2:72299720-72299739 None:intergenic 40.0%
TCAGCATCAAGGCTTAGAAA+AGG - chr8_2:72299721-72299740 None:intergenic 40.0%
GGAAATTAGGATCAGCATCA+AGG - chr8_2:72299732-72299751 None:intergenic 40.0%
TATGGAACCATCAACTACAG+GGG - chr8_2:72299788-72299807 None:intergenic 40.0%
GATATGGAACCATCAACTAC+AGG - chr8_2:72299790-72299809 None:intergenic 40.0%
GCATTTGATGTTCCATCAGT+TGG - chr8_2:72299913-72299932 None:intergenic 40.0%
! ATGTAAATTTCAGGTGGGGT+AGG - chr8_2:72300012-72300031 None:intergenic 40.0%
! CATGTTTGCCCTTTTAGATG+AGG + chr8_2:72300029-72300048 Msa1267180:CDS 40.0%
TTCCCCAATGTCTCTCAAAT+GGG - chr8_2:72300077-72300096 None:intergenic 40.0%
ATTCCCCAATGTCTCTCAAA+TGG - chr8_2:72300078-72300097 None:intergenic 40.0%
TTCCACCACCAAGATTCAAA+GGG - chr8_2:72300128-72300147 None:intergenic 40.0%
TTTCCACCACCAAGATTCAA+AGG - chr8_2:72300129-72300148 None:intergenic 40.0%
!! ATCACTAGTTGGTGCTAAAG+GGG + chr8_2:72300149-72300168 Msa1267180:CDS 40.0%
AGAAGGTGAAGGATCAATGT+TGG - chr8_2:72300412-72300431 None:intergenic 40.0%
ATTGATCCTTCACCTTCTCA+AGG + chr8_2:72300414-72300433 Msa1267180:CDS 40.0%
!! TTTTGGTGCAGCAAAAGAAG+TGG - chr8_2:72300490-72300509 None:intergenic 40.0%
AGAGTACATAATGGTCATGC+TGG + chr8_2:72300518-72300537 Msa1267180:CDS 40.0%
! GGGTACCTTTTGCCAAACTT+TGG - chr8_2:72298739-72298758 None:intergenic 45.0%
!! AGTTTGGCAAAAGGTACCCT+TGG + chr8_2:72298740-72298759 Msa1267180:CDS 45.0%
CCAATTGCAAGCAAAGCCAA+GGG - chr8_2:72298759-72298778 None:intergenic 45.0%
!! CCTTGGCTTTGCTTGCAATT+GGG + chr8_2:72298757-72298776 Msa1267180:CDS 45.0%
!! CTTGGCTTTGCTTGCAATTG+GGG + chr8_2:72298758-72298777 Msa1267180:CDS 45.0%
! GTTGTTTGAAGCTGATCCCA+TGG + chr8_2:72298856-72298875 Msa1267180:CDS 45.0%
TCTTGGGAATTCTGGCATTC+AGG + chr8_2:72298889-72298908 Msa1267180:CDS 45.0%
! TCTGGCATTCAGGTTATGGT+TGG + chr8_2:72298899-72298918 Msa1267180:CDS 45.0%
TGGAAGCAAGTGAATCCAAG+AGG - chr8_2:72298937-72298956 None:intergenic 45.0%
ATTCCCAGGTATGTTGCAGT+TGG + chr8_2:72299436-72299455 Msa1267180:intron 45.0%
CAAGCAGCCCTTATAAAAGC+AGG + chr8_2:72299529-72299548 Msa1267180:CDS 45.0%
GCCCTTATAAAAGCAGGGTT+AGG + chr8_2:72299535-72299554 Msa1267180:CDS 45.0%
GATGTCTACCAAAGTGACAC+TGG + chr8_2:72299592-72299611 Msa1267180:CDS 45.0%
!! ATGGAAGACCAGTGTCACTT+TGG - chr8_2:72299603-72299622 None:intergenic 45.0%
TGGCCCATTTGAGAGACATT+GGG + chr8_2:72300071-72300090 Msa1267180:CDS 45.0%
TACCCTTTGAATCTTGGTGG+TGG + chr8_2:72300123-72300142 Msa1267180:CDS 45.0%
!! GGTGGTGGAAAATCACTAGT+TGG + chr8_2:72300138-72300157 Msa1267180:CDS 45.0%
GATTGTACATCTCTTGCTCC+TGG + chr8_2:72300270-72300289 Msa1267180:CDS 45.0%
AAACCACTACAAGAAGAGCC+AGG - chr8_2:72300291-72300310 None:intergenic 45.0%
CAACTACCTTGAGAAGGTGA+AGG - chr8_2:72300423-72300442 None:intergenic 45.0%
GAGATACAAGTAGCACAGTG+TGG - chr8_2:72300729-72300748 None:intergenic 45.0%
!! CTGTGCTACTTGTATCTCGA+CGG + chr8_2:72300731-72300750 Msa1267180:three_prime_UTR 45.0%
! GGGTACCTTTTGCCAAACTT+TGG - chr8_2:72298739-72298758 None:intergenic 45.0%
!! AGTTTGGCAAAAGGTACCCT+TGG + chr8_2:72298740-72298759 Msa1267180:CDS 45.0%
CCAATTGCAAGCAAAGCCAA+GGG - chr8_2:72298759-72298778 None:intergenic 45.0%
!! CCTTGGCTTTGCTTGCAATT+GGG + chr8_2:72298757-72298776 Msa1267180:CDS 45.0%
!! CTTGGCTTTGCTTGCAATTG+GGG + chr8_2:72298758-72298777 Msa1267180:CDS 45.0%
! GTTGTTTGAAGCTGATCCCA+TGG + chr8_2:72298856-72298875 Msa1267180:CDS 45.0%
TCTTGGGAATTCTGGCATTC+AGG + chr8_2:72298889-72298908 Msa1267180:CDS 45.0%
! TCTGGCATTCAGGTTATGGT+TGG + chr8_2:72298899-72298918 Msa1267180:CDS 45.0%
TGGAAGCAAGTGAATCCAAG+AGG - chr8_2:72298937-72298956 None:intergenic 45.0%
ATTCCCAGGTATGTTGCAGT+TGG + chr8_2:72299436-72299455 Msa1267180:intron 45.0%
CAAGCAGCCCTTATAAAAGC+AGG + chr8_2:72299529-72299548 Msa1267180:CDS 45.0%
GCCCTTATAAAAGCAGGGTT+AGG + chr8_2:72299535-72299554 Msa1267180:CDS 45.0%
GATGTCTACCAAAGTGACAC+TGG + chr8_2:72299592-72299611 Msa1267180:CDS 45.0%
!! ATGGAAGACCAGTGTCACTT+TGG - chr8_2:72299603-72299622 None:intergenic 45.0%
TGGCCCATTTGAGAGACATT+GGG + chr8_2:72300071-72300090 Msa1267180:CDS 45.0%
TACCCTTTGAATCTTGGTGG+TGG + chr8_2:72300123-72300142 Msa1267180:CDS 45.0%
!! GGTGGTGGAAAATCACTAGT+TGG + chr8_2:72300138-72300157 Msa1267180:CDS 45.0%
GATTGTACATCTCTTGCTCC+TGG + chr8_2:72300270-72300289 Msa1267180:CDS 45.0%
AAACCACTACAAGAAGAGCC+AGG - chr8_2:72300291-72300310 None:intergenic 45.0%
CAACTACCTTGAGAAGGTGA+AGG - chr8_2:72300423-72300442 None:intergenic 45.0%
GAGATACAAGTAGCACAGTG+TGG - chr8_2:72300729-72300748 None:intergenic 45.0%
!! CCCTTGGCTTTGCTTGCAAT+TGG + chr8_2:72298756-72298775 Msa1267180:CDS 50.0%
CCCAATTGCAAGCAAAGCCA+AGG - chr8_2:72298760-72298779 None:intergenic 50.0%
CTGAAGGCTCTTGGGAATTC+TGG + chr8_2:72298881-72298900 Msa1267180:CDS 50.0%
TGGCATACCCAATGACCTCT+TGG + chr8_2:72298919-72298938 Msa1267180:CDS 50.0%
CAATGCTGCTATTGCATGGG+TGG + chr8_2:72298961-72298980 Msa1267180:CDS 50.0%
!! AGTGACACTGGTCTTCCATC+AGG + chr8_2:72299604-72299623 Msa1267180:CDS 50.0%
! GGTCTAAAGTGTCCACCTGA+TGG - chr8_2:72299622-72299641 None:intergenic 50.0%
! GAAGTTGGTTGGCCAACTGA+TGG + chr8_2:72299898-72299917 Msa1267180:CDS 50.0%
! TCAGGTGGGGTAGGTCTTTT+AGG - chr8_2:72300003-72300022 None:intergenic 50.0%
CAATGTCTCTCAAATGGGCC+AGG - chr8_2:72300072-72300091 None:intergenic 50.0%
CTGGCCCATTTGAGAGACAT+TGG + chr8_2:72300070-72300089 Msa1267180:CDS 50.0%
GGCCCATTTGAGAGACATTG+GGG + chr8_2:72300072-72300091 Msa1267180:CDS 50.0%
!! CCCTTGGCTTTGCTTGCAAT+TGG + chr8_2:72298756-72298775 Msa1267180:CDS 50.0%
CCCAATTGCAAGCAAAGCCA+AGG - chr8_2:72298760-72298779 None:intergenic 50.0%
CTGAAGGCTCTTGGGAATTC+TGG + chr8_2:72298881-72298900 Msa1267180:CDS 50.0%
TGGCATACCCAATGACCTCT+TGG + chr8_2:72298919-72298938 Msa1267180:CDS 50.0%
CAATGCTGCTATTGCATGGG+TGG + chr8_2:72298961-72298980 Msa1267180:CDS 50.0%
!! AGTGACACTGGTCTTCCATC+AGG + chr8_2:72299604-72299623 Msa1267180:CDS 50.0%
! GGTCTAAAGTGTCCACCTGA+TGG - chr8_2:72299622-72299641 None:intergenic 50.0%
! GAAGTTGGTTGGCCAACTGA+TGG + chr8_2:72299898-72299917 Msa1267180:CDS 50.0%
! TCAGGTGGGGTAGGTCTTTT+AGG - chr8_2:72300003-72300022 None:intergenic 50.0%
CAATGTCTCTCAAATGGGCC+AGG - chr8_2:72300072-72300091 None:intergenic 50.0%
CTGGCCCATTTGAGAGACAT+TGG + chr8_2:72300070-72300089 Msa1267180:CDS 50.0%
GGCCCATTTGAGAGACATTG+GGG + chr8_2:72300072-72300091 Msa1267180:CDS 50.0%
! AGCTGATCCCATGGCACTGA+AGG + chr8_2:72298865-72298884 Msa1267180:CDS 55.0%
CCAAGAGCCTTCAGTGCCAT+GGG - chr8_2:72298875-72298894 None:intergenic 55.0%
! CCATGGCACTGAAGGCTCTT+GGG + chr8_2:72298873-72298892 Msa1267180:CDS 55.0%
!! GACACTGGTCTTCCATCAGG+TGG + chr8_2:72299607-72299626 Msa1267180:CDS 55.0%
TCTGCTGCCCCTGTAGTTGA+TGG + chr8_2:72299778-72299797 Msa1267180:CDS 55.0%
! GCTCCTGGCTCTTCTTGTAG+TGG + chr8_2:72300285-72300304 Msa1267180:CDS 55.0%
! AGCTGATCCCATGGCACTGA+AGG + chr8_2:72298865-72298884 Msa1267180:CDS 55.0%
CCAAGAGCCTTCAGTGCCAT+GGG - chr8_2:72298875-72298894 None:intergenic 55.0%
! CCATGGCACTGAAGGCTCTT+GGG + chr8_2:72298873-72298892 Msa1267180:CDS 55.0%
!! GACACTGGTCTTCCATCAGG+TGG + chr8_2:72299607-72299626 Msa1267180:CDS 55.0%
TCTGCTGCCCCTGTAGTTGA+TGG + chr8_2:72299778-72299797 Msa1267180:CDS 55.0%
! GCTCCTGGCTCTTCTTGTAG+TGG + chr8_2:72300285-72300304 Msa1267180:CDS 55.0%
! CCCATGGCACTGAAGGCTCT+TGG + chr8_2:72298872-72298891 Msa1267180:CDS 60.0%
CCCAAGAGCCTTCAGTGCCA+TGG - chr8_2:72298876-72298895 None:intergenic 60.0%
! CCCATGGCACTGAAGGCTCT+TGG + chr8_2:72298872-72298891 Msa1267180:CDS 60.0%
CCCAAGAGCCTTCAGTGCCA+TGG - chr8_2:72298876-72298895 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 72298629 72300751 72298629 ID=Msa1267180;Name=Msa1267180
chr8_2 mRNA 72298629 72300751 72298629 ID=Msa1267180-mRNA-1;Parent=Msa1267180;Name=Msa1267180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=54|1|1|1|1|1|2|173|493
chr8_2 exon 72298629 72299029 72298629 ID=Msa1267180-mRNA-1:exon:24409;Parent=Msa1267180-mRNA-1
chr8_2 exon 72299444 72300751 72299444 ID=Msa1267180-mRNA-1:exon:24410;Parent=Msa1267180-mRNA-1
chr8_2 five_prime_UTR 72298629 72298682 72298629 ID=Msa1267180-mRNA-1:five_prime_utr;Parent=Msa1267180-mRNA-1
chr8_2 CDS 72298683 72299029 72298683 ID=Msa1267180-mRNA-1:cds;Parent=Msa1267180-mRNA-1
chr8_2 CDS 72299444 72300578 72299444 ID=Msa1267180-mRNA-1:cds;Parent=Msa1267180-mRNA-1
chr8_2 three_prime_UTR 72300579 72300751 72300579 ID=Msa1267180-mRNA-1:three_prime_utr;Parent=Msa1267180-mRNA-1
Gene Sequence

>Msa1267180

ATGGGATTCCAACGTTTTAGTACGTGCTTTTTGTTGGCACTTTGTATACTAAGCCAAAGTTTGGCAAAAGGTACCCTTGGCTTTGCTTGCAATTGGGGAACGATTACATCGCATCCTCTTCCAGCTCAAATAATGGTGAAGCTTATGAAAGACAATGGAATCAACAAAGTGAAGTTGTTTGAAGCTGATCCCATGGCACTGAAGGCTCTTGGGAATTCTGGCATTCAGGTTATGGTTGGCATACCCAATGACCTCTTGGATTCACTTGCTTCCAATGTCAATGCTGCTATTGCATGGGTGGACCAAAATGTTTCCGCCTTCATATCTAAAAATGGGGTTGATATAAGGTATGTTGCAGTTGGTAATGAAGCTTTTCTAAAAACATACAATGGACGATTTGTGCAATCAACATTTCCTGCCATAAAAAACATTCAAGCAGCCCTTATAAAAGCAGGGTTAGGCAGACAAGTAAAAGTAACAACCCCTTTAAATGCTGATGTCTACCAAAGTGACACTGGTCTTCCATCAGGTGGACACTTTAGACCAGACATTCAAAACCAAATGATGTCAATAATCAAATTTCTTAGCCAAAATAACGGCCCTCTTACATTTAACATCTACCCTTTTCTAAGCCTTGATGCTGATCCTAATTTCCCTAAAGAATTTGCTTTCTTTGATGGTTCTGCTGCCCCTGTAGTTGATGGTTCCATATCTTACACCAATGTTTTTGATGCAAATTTTGATACACTTATTTCAGCTCTTGAAAAAAATGGTTTTGGTTCAATGAATGTTATCATTGGTGAAGTTGGTTGGCCAACTGATGGAACATCAAATGCTAATATAAAAAGTGCTCAAAGATTTAATCAAGGACTTGTTGATAGAATAGTGAAAAAGCAAGGAACTCCTAAAAGACCTACCCCACCTGAAATTTACATGTTTGCCCTTTTAGATGAGGATTTAAAAAGTATTGATCCTGGCCCATTTGAGAGACATTGGGGAATTTTCAATTTTGATGGATCTATGAAATACCCTTTGAATCTTGGTGGTGGAAAATCACTAGTTGGTGCTAAAGGGGTTAAATATTTGCCAAAACAATGGTGTGTTATTTCATCTCAAGCAAATGTAATGGATCCTAATTTTGCACAAAGTATGAGCAAAGCTTGTACATACGCTGATTGTACATCTCTTGCTCCTGGCTCTTCTTGTAGTGGTTTAGACACAAAGGGTAATGCTTCATATGCATTTAATATGTATTATCAAAGAATGGATCAACGTAAAGATGCATGTCAATTCAATGGTTTATCAGTTGTTACCAACATTGATCCTTCACCTTCTCAAGGTAGTTGTCATTTTGAGATCATGATTGATATTGGGAAGCATGAAACTAAGTCCACTTCTTTTGCTGCACCAAAAATTGGATTAGAGTACATAATGGTCATGCTGGTATCAAGCTTCAGTTTCACCTTATCTCTATTTGTATAG
Protein sequence

>Msa1267180

MGFQRFSTCFLLALCILSQSLAKGTLGFACNWGTITSHPLPAQIMVKLMKDNGINKVKLFEADPMALKALGNSGIQVMVGIPNDLLDSLASNVNAAIAWVDQNVSAFISKNGVDIRYVAVGNEAFLKTYNGRFVQSTFPAIKNIQAALIKAGLGRQVKVTTPLNADVYQSDTGLPSGGHFRPDIQNQMMSIIKFLSQNNGPLTFNIYPFLSLDADPNFPKEFAFFDGSAAPVVDGSISYTNVFDANFDTLISALEKNGFGSMNVIIGEVGWPTDGTSNANIKSAQRFNQGLVDRIVKKQGTPKRPTPPEIYMFALLDEDLKSIDPGPFERHWGIFNFDGSMKYPLNLGGGKSLVGAKGVKYLPKQWCVISSQANVMDPNFAQSMSKACTYADCTSLAPGSSCSGLDTKGNASYAFNMYYQRMDQRKDACQFNGLSVVTNIDPSPSQGSCHFEIMIDIGKHETKSTSFAAPKIGLEYIMVMLVSSFSFTLSLFV*