AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1401520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1401520 MtrunA17_Chr4g0069801 97.566 493 11 1 1 493 1 492 0.0 992
Msa1401520 MtrunA17_Chr1g0148391 57.456 456 189 3 1 455 1 452 0.0 526
Msa1401520 MtrunA17_Chr3g0138741 53.958 480 216 3 4 481 8 484 1.35e-180 515
Msa1401520 MtrunA17_Chr6g0461601 51.509 464 211 7 1 456 1 458 4.63e-161 465
Msa1401520 MtrunA17_Chr4g0062771 49.889 451 216 6 11 455 14 460 2.53e-159 461
Msa1401520 MtrunA17_Chr4g0076581 50.321 467 220 6 31 493 36 494 2.35e-157 456
Msa1401520 MtrunA17_Chr8g0383311 48.018 454 229 4 6 455 20 470 1.42e-156 454
Msa1401520 MtrunA17_Chr2g0290821 52.055 438 202 5 31 464 31 464 3.05e-156 453
Msa1401520 MtrunA17_Chr7g0253091 52.009 448 206 5 27 469 25 468 7.38e-156 452
Msa1401520 MtrunA17_Chr2g0306311 44.190 525 246 8 1 492 1 511 1.24e-150 439
Msa1401520 MtrunA17_Chr3g0129341 45.661 484 242 8 13 481 10 487 1.84e-138 407
Msa1401520 MtrunA17_Chr3g0105981 44.819 415 224 4 21 434 20 430 1.28e-121 362
Msa1401520 MtrunA17_Chr4g0046311 32.903 465 277 18 14 454 9 462 1.23e-67 224
Msa1401520 MtrunA17_Chr8g0339191 34.989 443 260 17 30 455 31 462 4.09e-65 218
Msa1401520 MtrunA17_Chr3g0144531 33.260 457 273 16 3 443 8 448 2.13e-64 215
Msa1401520 MtrunA17_Chr4g0034901 32.527 455 276 16 10 443 9 453 1.11e-63 214
Msa1401520 MtrunA17_Chr1g0161011 33.480 454 275 16 11 451 6 445 1.00e-59 204
Msa1401520 MtrunA17_Chr4g0003281 36.389 360 206 13 7 351 12 363 4.35e-59 200
Msa1401520 MtrunA17_Chr5g0434591 31.729 457 280 17 10 451 5 444 2.95e-58 200
Msa1401520 MtrunA17_Chr2g0294601 34.181 354 221 7 1 352 33 376 7.29e-58 196
Msa1401520 MtrunA17_Chr7g0234821 32.184 435 259 19 39 451 38 458 1.71e-55 192
Msa1401520 MtrunA17_Chr1g0177171 29.638 469 275 18 24 451 36 490 3.52e-55 192
Msa1401520 MtrunA17_Chr2g0294591 36.218 312 189 6 40 349 41 344 4.83e-55 188
Msa1401520 MtrunA17_Chr3g0121271 28.571 462 299 16 1 449 1 444 1.87e-54 190
Msa1401520 MtrunA17_Chr8g0378621 30.416 457 289 16 10 451 6 448 2.80e-54 189
Msa1401520 MtrunA17_Chr3g0110371 30.819 464 276 21 10 451 5 445 5.74e-54 189
Msa1401520 MtrunA17_Chr4g0039071 33.861 316 198 7 32 345 29 335 8.02e-54 185
Msa1401520 MtrunA17_Chr5g0439251 30.573 471 279 18 24 459 23 480 9.34e-54 188
Msa1401520 MtrunA17_Chr6g0487261 30.682 440 270 19 41 462 40 462 3.79e-52 184
Msa1401520 MtrunA17_Chr8g0389741 29.647 425 275 14 39 451 40 452 1.04e-51 183
Msa1401520 MtrunA17_Chr7g0250301 37.037 324 189 10 25 345 5 316 1.57e-51 177
Msa1401520 MtrunA17_Chr7g0223961 30.254 433 266 19 31 443 26 442 1.57e-51 181
Msa1401520 MtrunA17_Chr1g0146831 34.218 339 202 13 14 343 17 343 2.31e-50 176
Msa1401520 MtrunA17_Chr4g0064021 34.706 340 202 12 20 349 18 347 5.10e-50 175
Msa1401520 MtrunA17_Chr4g0075031 28.375 437 279 14 31 451 48 466 2.18e-49 177
Msa1401520 MtrunA17_Chr4g0038961 34.211 342 205 12 7 345 2 326 2.08e-48 169
Msa1401520 MtrunA17_Chr3g0119541 33.724 341 209 11 21 352 20 352 4.37e-48 169
Msa1401520 MtrunA17_Chr1g0174261 34.948 289 177 8 57 343 1 280 2.05e-47 167
Msa1401520 MtrunA17_Chr4g0043851 31.722 331 209 12 27 349 31 352 2.40e-47 169
Msa1401520 MtrunA17_Chr4g0038981 32.268 313 196 8 32 343 27 324 3.55e-47 166
Msa1401520 MtrunA17_Chr4g0026321 29.787 376 230 15 26 391 27 378 6.82e-47 167
Msa1401520 MtrunA17_Chr2g0321511 32.051 390 228 19 7 381 5 372 7.70e-47 167
Msa1401520 MtrunA17_Chr4g0038971 32.558 344 210 13 6 345 1 326 9.24e-47 165
Msa1401520 MtrunA17_Chr4g0038941 34.091 308 183 10 43 347 67 357 1.08e-46 166
Msa1401520 MtrunA17_Chr1g0189111 35.312 337 196 14 21 348 24 347 1.90e-46 167
Msa1401520 MtrunA17_Chr1g0155001 32.099 324 205 9 28 343 24 340 4.17e-46 166
Msa1401520 MtrunA17_Chr4g0039021 33.775 302 184 9 48 345 1 290 1.41e-45 161
Msa1401520 MtrunA17_Chr4g0039011 29.863 365 220 11 6 349 1 350 6.78e-43 155
Msa1401520 MtrunA17_Chr7g0250321 36.735 294 175 8 1 292 1 285 1.01e-41 150
Msa1401520 MtrunA17_Chr4g0043511 26.237 465 299 16 18 451 52 503 2.38e-41 155
Msa1401520 MtrunA17_Chr2g0285901 30.836 347 218 15 8 343 2 337 4.00e-40 149
Msa1401520 MtrunA17_Chr5g0436361 28.477 302 198 10 49 343 58 348 1.34e-27 114
Msa1401520 MtrunA17_Chr2g0294581 32.143 196 114 5 40 226 87 272 9.23e-21 92.4
Msa1401520 MtrunA17_Chr1g0213651 40.909 88 46 4 366 451 276 359 8.39e-12 66.6
Msa1401520 MtrunA17_Chr4g0018861 34.783 92 55 3 256 346 87 174 3.40e-11 63.2
Msa1401520 MtrunA17_Chr4g0018771 33.333 96 59 3 251 345 84 175 8.49e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1401520 AT5G20870.1 61.475 488 170 6 10 482 13 497 0.0 611
Msa1401520 AT4G31140.1 56.067 478 203 3 6 483 7 477 0.0 534
Msa1401520 AT5G58090.1 58.178 428 175 2 31 456 25 450 0.0 523
Msa1401520 AT2G19440.2 54.378 434 188 6 27 455 20 448 5.92e-162 468
Msa1401520 AT2G19440.1 54.378 434 188 6 27 455 20 448 5.92e-162 468
Msa1401520 AT1G64760.1 53.917 434 190 6 27 455 24 452 8.28e-161 465
Msa1401520 AT1G64760.2 53.917 434 190 6 27 455 24 452 8.28e-161 465
Msa1401520 AT5G64790.1 51.025 439 209 4 20 455 20 455 5.85e-157 455
Msa1401520 AT3G24330.1 49.781 456 218 7 9 458 21 471 1.95e-154 449
Msa1401520 AT3G04010.1 50.670 448 208 6 13 455 22 461 3.70e-152 443
Msa1401520 AT5G18220.1 49.458 461 218 8 4 455 5 459 4.42e-150 437
Msa1401520 AT4G17180.1 48.344 453 216 8 10 458 10 448 2.48e-147 430
Msa1401520 AT5G58480.1 42.694 438 244 5 31 467 29 460 1.90e-125 374
Msa1401520 AT2G01630.1 32.874 435 262 17 31 451 26 444 6.28e-66 221
Msa1401520 AT4G26830.1 32.543 464 271 18 10 451 8 451 1.04e-65 219
Msa1401520 AT4G26830.2 32.957 443 256 18 31 451 32 455 1.99e-65 218
Msa1401520 AT2G01630.3 32.787 427 259 16 31 443 26 438 2.05e-65 218
Msa1401520 AT5G55180.1 31.900 442 265 18 31 451 30 456 4.17e-65 218
Msa1401520 AT2G05790.1 32.026 459 268 17 24 451 23 468 9.53e-65 217
Msa1401520 AT5G55180.2 31.954 435 262 17 30 443 29 450 9.03e-64 214
Msa1401520 AT4G34480.1 33.784 444 272 14 10 443 10 441 1.02e-62 213
Msa1401520 AT5G24318.1 30.501 459 280 21 13 452 18 456 1.99e-60 205
Msa1401520 AT5G24318.2 30.667 450 275 20 13 443 18 449 1.70e-59 202
Msa1401520 AT2G16230.1 30.977 481 299 17 31 492 28 494 1.18e-58 202
Msa1401520 AT3G57270.1 37.942 311 181 8 39 347 39 339 3.25e-58 196
Msa1401520 AT1G66250.1 31.278 454 286 14 28 470 32 470 1.33e-57 199
Msa1401520 AT3G55430.1 33.182 440 253 21 31 451 32 449 1.58e-56 195
Msa1401520 AT1G11820.2 29.638 442 275 15 26 451 44 465 1.87e-56 196
Msa1401520 AT5G56590.1 29.978 447 281 16 39 469 38 468 1.44e-55 194
Msa1401520 AT3G23770.1 31.757 444 268 19 31 451 40 471 3.47e-55 192
Msa1401520 AT1G11820.3 29.263 434 273 14 26 443 44 459 3.58e-55 192
Msa1401520 AT3G13560.4 32.553 427 259 16 31 443 29 440 6.39e-55 192
Msa1401520 AT3G13560.1 32.553 427 259 16 31 443 29 440 6.39e-55 192
Msa1401520 AT3G13560.2 32.553 427 259 16 31 443 29 440 6.39e-55 192
Msa1401520 AT3G13560.5 32.553 427 259 16 31 443 29 440 6.39e-55 192
Msa1401520 AT3G13560.3 32.553 427 259 16 31 443 29 440 6.39e-55 192
Msa1401520 AT3G07320.1 32.311 424 258 18 46 451 43 455 6.93e-54 188
Msa1401520 AT4G16260.2 35.556 315 189 9 40 351 6 309 1.74e-52 180
Msa1401520 AT4G16260.1 35.556 315 189 9 40 351 35 338 2.27e-52 181
Msa1401520 AT4G14080.1 31.754 422 261 15 39 442 54 466 3.44e-52 184
Msa1401520 AT2G01630.2 33.531 337 204 12 30 355 25 352 1.71e-51 180
Msa1401520 AT3G57260.1 35.691 311 182 11 39 347 44 338 2.33e-51 178
Msa1401520 AT3G57260.2 35.691 311 182 11 39 347 60 354 2.99e-51 178
Msa1401520 AT4G34480.2 35.328 351 209 11 10 352 10 350 6.37e-51 177
Msa1401520 AT3G15800.1 33.526 346 214 11 16 352 30 368 1.68e-50 177
Msa1401520 AT1G32860.1 33.616 354 212 15 3 345 6 347 2.39e-50 177
Msa1401520 AT2G27500.2 34.441 331 201 11 27 349 28 350 2.13e-49 174
Msa1401520 AT2G27500.1 34.441 331 201 11 27 349 28 350 4.91e-49 173
Msa1401520 AT4G29360.1 28.160 451 276 14 39 453 39 477 2.26e-48 175
Msa1401520 AT4G29360.2 28.074 488 295 16 10 453 12 487 2.56e-48 175
Msa1401520 AT2G39640.1 30.508 472 287 21 10 466 12 457 4.37e-48 174
Msa1401520 AT5G24318.4 32.153 339 208 15 13 343 18 342 2.76e-47 168
Msa1401520 AT2G26600.1 33.134 335 204 12 28 352 34 358 1.29e-46 167
Msa1401520 AT1G30080.2 29.014 355 229 12 3 343 5 350 2.50e-44 160
Msa1401520 AT1G77780.1 33.887 301 183 11 39 336 36 323 3.27e-44 159
Msa1401520 AT1G30080.1 29.014 355 229 12 3 343 5 350 4.29e-44 160
Msa1401520 AT1G77790.1 32.565 347 216 11 5 345 7 341 5.63e-44 158
Msa1401520 AT4G34480.3 33.929 336 204 12 118 443 3 330 6.15e-44 159
Msa1401520 AT4G18340.2 30.084 359 225 15 3 348 6 351 3.62e-43 157
Msa1401520 AT4G18340.1 30.084 359 225 15 3 348 6 351 6.55e-43 157
Msa1401520 AT5G42720.1 31.909 351 220 12 6 347 6 346 1.44e-42 157
Msa1401520 AT3G61810.1 31.487 343 208 13 18 348 45 372 2.04e-42 155
Msa1401520 AT3G57240.1 32.476 311 188 10 41 347 48 340 6.36e-42 153
Msa1401520 AT5G42100.2 30.814 344 218 13 14 347 15 348 1.57e-41 154
Msa1401520 AT5G42100.1 30.814 344 218 13 14 347 15 348 2.12e-41 153
Msa1401520 AT1G11820.1 29.641 334 217 10 26 350 44 368 3.17e-40 149
Msa1401520 AT1G33220.1 29.321 324 214 10 3 321 9 322 1.21e-39 146
Msa1401520 AT5G20390.1 29.499 339 216 10 9 336 7 333 1.78e-39 146
Msa1401520 AT2G27500.3 34.050 279 170 9 78 349 1 272 1.02e-38 143
Msa1401520 AT5G24318.3 30.000 330 200 14 141 452 1 317 1.28e-38 143
Msa1401520 AT5G20560.1 29.560 318 195 10 30 336 36 335 1.48e-37 141
Msa1401520 AT5G20330.1 28.319 339 225 11 3 336 9 334 7.50e-36 136
Msa1401520 AT5G20340.1 29.841 315 197 13 30 336 45 343 1.42e-35 136
Msa1401520 AT2G26600.2 34.066 273 162 10 89 352 1 264 1.05e-34 132
Msa1401520 AT3G46570.1 30.029 343 217 13 10 343 12 340 2.39e-32 127
Msa1401520 AT3G55780.1 25.857 321 217 10 41 351 49 358 3.37e-26 110

Find 107 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATTCTTTAGGGAAATT+AGG 0.162535 tig0022711:-37885 None:intergenic
TCAAAGAAAGCAAATTCTTT+AGG 0.203190 tig0022711:-37894 None:intergenic
CTCATACTTTGTGCAAAATT+AGG 0.205482 tig0022711:-38371 None:intergenic
AAAGAATTTGCTTTCTTTGA+TGG 0.208174 tig0022711:+37897 Msa1401520:CDS
CCCTTGGCTTTGCTTGCAAT+TGG 0.238585 tig0022711:+36915 Msa1401520:CDS
TTTGAGATCATGATTGATAT+TGG 0.242623 tig0022711:+38590 Msa1401520:CDS
ATGTAAGAGGGCCGTTATTT+TGG 0.244858 tig0022711:-37827 None:intergenic
CTGAAGGCTCTTGGGAATTC+TGG 0.246366 tig0022711:+37040 Msa1401520:CDS
TCTTGGGAATTCTGGCATTC+AGG 0.280623 tig0022711:+37048 Msa1401520:CDS
ATGAAATACCCTTTGAATCT+TGG 0.284657 tig0022711:+38260 Msa1401520:CDS
CAAAGAAAGCAAATTCTTTA+GGG 0.289026 tig0022711:-37893 None:intergenic
CCTTGGCTTTGCTTGCAATT+GGG 0.291854 tig0022711:+36916 Msa1401520:CDS
AGGGCAAACATGTAAATTTC+AGG 0.292702 tig0022711:-38161 None:intergenic
GAAATAACACACCATTGTTT+TGG 0.299535 tig0022711:-38326 None:intergenic
GAATTCTGGCATTCAGGTTA+TGG 0.301145 tig0022711:+37054 Msa1401520:CDS
TGGTAGACATCAGCATTTAA+AGG 0.322180 tig0022711:-37723 None:intergenic
ATTTGATTATTGACATCATT+TGG 0.333649 tig0022711:-37797 None:intergenic
TCTGCTGCCCCTGTAGTTGA+TGG 0.360256 tig0022711:+37921 Msa1401520:CDS
ATATGAAGGCGGAAACATTT+TGG 0.364501 tig0022711:-37144 None:intergenic
GGTAGACATCAGCATTTAAA+GGG 0.366946 tig0022711:-37722 None:intergenic
TTGAGATCATGATTGATATT+GGG 0.371941 tig0022711:+38591 Msa1401520:CDS
TCCTCTTCCAGCTCAAATAA+TGG 0.373231 tig0022711:+36955 Msa1401520:CDS
TTGTATACTAAGCCAAAGTT+TGG 0.391479 tig0022711:+36883 Msa1401520:CDS
ATTCCCCAATGTCTCTCAAA+TGG 0.397966 tig0022711:-38218 None:intergenic
CCCATGGCACTGAAGGCTCT+TGG 0.409961 tig0022711:+37031 Msa1401520:CDS
CTTGGCTTTGCTTGCAATTG+GGG 0.413284 tig0022711:+36917 Msa1401520:CDS
AAATCACTAGTTGGTGCTAA+AGG 0.413423 tig0022711:+38290 Msa1401520:CDS
AGCTTCACCATTATTTGAGC+TGG 0.418137 tig0022711:-36962 None:intergenic
CCATGGCACTGAAGGCTCTT+GGG 0.419662 tig0022711:+37032 Msa1401520:CDS
AATCACTAGTTGGTGCTAAA+GGG 0.420833 tig0022711:+38291 Msa1401520:CDS
TGGCCCATTTGAGAGACATT+GGG 0.432301 tig0022711:+38214 Msa1401520:CDS
AAAGATGCATGTCAATTCAA+TGG 0.443198 tig0022711:+38515 Msa1401520:CDS
TTCATCTCAAGCAAATGTAA+TGG 0.443401 tig0022711:+38346 Msa1401520:CDS
GGGTAGATGTTAAATGTAAG+AGG 0.443692 tig0022711:-37840 None:intergenic
TAATATGTATTATCAAAGAA+TGG 0.448941 tig0022711:+38484 Msa1401520:CDS
TGGCATACCCAATGACCTCT+TGG 0.450780 tig0022711:+37078 Msa1401520:CDS
AATGTTATCATTGGTGAAGT+TGG 0.454844 tig0022711:+38026 Msa1401520:CDS
GCATTTGATGTTCCATCAGT+TGG 0.457755 tig0022711:-38053 None:intergenic
AGCTGATCCCATGGCACTGA+AGG 0.462871 tig0022711:+37024 Msa1401520:CDS
CAAGCAGCCCTTATAAAAGC+AGG 0.466267 tig0022711:+37672 Msa1401520:CDS
GGTTCAATGAATGTTATCAT+TGG 0.468945 tig0022711:+38017 Msa1401520:CDS
AAGTGAATCCAAGAGGTCAT+TGG 0.477036 tig0022711:-37086 None:intergenic
AGTGAATCCAAGAGGTCATT+GGG 0.485799 tig0022711:-37085 None:intergenic
CTGGCCCATTTGAGAGACAT+TGG 0.488422 tig0022711:+38213 Msa1401520:CDS
TCAGCATCAAGGCTTAGAAA+AGG 0.491244 tig0022711:-37861 None:intergenic
AGTTTGGCAAAAGGTACCCT+TGG 0.491787 tig0022711:+36899 Msa1401520:CDS
TTCCCCAATGTCTCTCAAAT+GGG 0.492714 tig0022711:-38217 None:intergenic
ACCATTATTTGAGCTGGAAG+AGG 0.496228 tig0022711:-36956 None:intergenic
CCCAAGAGCCTTCAGTGCCA+TGG 0.497598 tig0022711:-37032 None:intergenic
GCTCCTGGCTCTTCTTGTAG+TGG 0.498871 tig0022711:+38428 Msa1401520:CDS
GATTGTACATCTCTTGCTCC+TGG 0.501491 tig0022711:+38413 Msa1401520:CDS
AAATTTCTTAGCCAAAATAA+CGG 0.503273 tig0022711:+37816 Msa1401520:CDS
AGTGACACTGGTCTTCCATC+AGG 0.505930 tig0022711:+37747 Msa1401520:CDS
GATATGGAACCATCAACTAC+AGG 0.506108 tig0022711:-37930 None:intergenic
TACCCTTTGAATCTTGGTGG+TGG 0.509344 tig0022711:+38266 Msa1401520:CDS
CAATGTCTCTCAAATGGGCC+AGG 0.515554 tig0022711:-38212 None:intergenic
GCCCTTATAAAAGCAGGGTT+AGG 0.517583 tig0022711:+37678 Msa1401520:CDS
TTTCCACCACCAAGATTCAA+AGG 0.519584 tig0022711:-38269 None:intergenic
TCTGGCATTCAGGTTATGGT+TGG 0.523834 tig0022711:+37058 Msa1401520:CDS
GGAAATTAGGATCAGCATCA+AGG 0.525105 tig0022711:-37872 None:intergenic
ATGGAAGACCAGTGTCACTT+TGG 0.528047 tig0022711:-37743 None:intergenic
CTAAGCCAAAGTTTGGCAAA+AGG 0.528146 tig0022711:+36890 Msa1401520:CDS
ATTCCCAGGTATGTTGCAGT+TGG 0.531912 tig0022711:+37579 Msa1401520:intron
AAAAGCACGTACTAAAACGT+TGG 0.532946 tig0022711:-36850 None:intergenic
TGTAGTGGTTTAGACACAAA+GGG 0.535458 tig0022711:+38443 Msa1401520:CDS
CAGCATCAAGGCTTAGAAAA+GGG 0.536287 tig0022711:-37860 None:intergenic
CCCAATTGCAAGCAAAGCCA+AGG 0.538896 tig0022711:-36916 None:intergenic
ATGTAAATTTCAGGTGGGGT+AGG 0.542978 tig0022711:-38152 None:intergenic
AGAGTACATAATGGTCATGC+TGG 0.544525 tig0022711:+38661 Msa1401520:CDS
CCAAGAGCCTTCAGTGCCAT+GGG 0.544609 tig0022711:-37031 None:intergenic
AATTGGATTAGAGTACATAA+TGG 0.544687 tig0022711:+38652 Msa1401520:CDS
AGACTATACAAATAGAGATA+AGG 0.546510 tig0022711:-38702 None:intergenic
TTCCACCACCAAGATTCAAA+GGG 0.549004 tig0022711:-38268 None:intergenic
GGTCTAAAGTGTCCACCTGA+TGG 0.549481 tig0022711:-37762 None:intergenic
TGCAATAGCAGCATTGACAT+TGG 0.551848 tig0022711:-37113 None:intergenic
AGTGCTCAAAGATTTAATCA+AGG 0.558025 tig0022711:+38086 Msa1401520:CDS
TTAAATATTTGCCAAAACAA+TGG 0.559751 tig0022711:+38315 Msa1401520:CDS
AGAAGGTGAAGGATCAATGT+TGG 0.571619 tig0022711:-38552 None:intergenic
ATGTCAATGCTGCTATTGCA+TGG 0.571781 tig0022711:+37116 Msa1401520:CDS
ATCACTAGTTGGTGCTAAAG+GGG 0.581029 tig0022711:+38292 Msa1401520:CDS
AAATACCCTTTGAATCTTGG+TGG 0.581742 tig0022711:+38263 Msa1401520:CDS
ATTGATCCTTCACCTTCTCA+AGG 0.584331 tig0022711:+38557 Msa1401520:CDS
GTGAAGCTTATGAAAGACAA+TGG 0.584491 tig0022711:+36977 Msa1401520:CDS
ATATGGAACCATCAACTACA+GGG 0.586294 tig0022711:-37929 None:intergenic
TTGTAGTGGTTTAGACACAA+AGG 0.587590 tig0022711:+38442 Msa1401520:CDS
GCAAACATGTAAATTTCAGG+TGG 0.588739 tig0022711:-38158 None:intergenic
GGTGGTGGAAAATCACTAGT+TGG 0.601318 tig0022711:+38281 Msa1401520:CDS
CAATGCTGCTATTGCATGGG+TGG 0.601494 tig0022711:+37120 Msa1401520:CDS
TTATCATTGGTGAAGTTGGT+TGG 0.606188 tig0022711:+38030 Msa1401520:CDS
CAAACATGTAAATTTCAGGT+GGG 0.606459 tig0022711:-38157 None:intergenic
GGTAGATGTTAAATGTAAGA+GGG 0.611599 tig0022711:-37839 None:intergenic
AAATGACAACTACCTTGAGA+AGG 0.612080 tig0022711:-38569 None:intergenic
GATGTCTACCAAAGTGACAC+TGG 0.613469 tig0022711:+37735 Msa1401520:CDS
AAACCACTACAAGAAGAGCC+AGG 0.623694 tig0022711:-38431 None:intergenic
AAGCAGCCCTTATAAAAGCA+GGG 0.628845 tig0022711:+37673 Msa1401520:CDS
GAAGTTGGTTGGCCAACTGA+TGG 0.629204 tig0022711:+38041 Msa1401520:CDS
GGCCCATTTGAGAGACATTG+GGG 0.629502 tig0022711:+38215 Msa1401520:CDS
AAACATGTAAATTTCAGGTG+GGG 0.634074 tig0022711:-38156 None:intergenic
TGTCAATGCTGCTATTGCAT+GGG 0.635182 tig0022711:+37117 Msa1401520:CDS
GACACTGGTCTTCCATCAGG+TGG 0.637692 tig0022711:+37750 Msa1401520:CDS
GTTGTTTGAAGCTGATCCCA+TGG 0.646484 tig0022711:+37015 Msa1401520:CDS
GTAGACATCAGCATTTAAAG+GGG 0.650986 tig0022711:-37721 None:intergenic
CAACTACCTTGAGAAGGTGA+AGG 0.652284 tig0022711:-38563 None:intergenic
CCAATTGCAAGCAAAGCCAA+GGG 0.668441 tig0022711:-36915 None:intergenic
GAGATACAAGTAGCACAGTG+TGG 0.710703 tig0022711:-38869 None:intergenic
TGGAAGCAAGTGAATCCAAG+AGG 0.710711 tig0022711:-37093 None:intergenic
TATGGAACCATCAACTACAG+GGG 0.718530 tig0022711:-37928 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACACAATATTTTTTATTTTT+TGG + tig0022711:38762-38781 Msa1401520:three_prime_UTR 10.0%
!!! ACACAATATTTTTTATTTTT+TGG + tig0022711:38762-38781 Msa1401520:three_prime_UTR 10.0%
!!! AAGTAACATTAATGTTTTAT+TGG + tig0022711:37407-37426 Msa1401520:intron 15.0%
!! TAATATGTATTATCAAAGAA+TGG + tig0022711:38484-38503 Msa1401520:CDS 15.0%
!!! ATCAATTACACATTTATTTT+TGG - tig0022711:38810-38829 None:intergenic 15.0%
!!! AAGTAACATTAATGTTTTAT+TGG + tig0022711:37407-37426 Msa1401520:intron 15.0%
!! TAATATGTATTATCAAAGAA+TGG + tig0022711:38484-38503 Msa1401520:CDS 15.0%
!!! ATCAATTACACATTTATTTT+TGG - tig0022711:38810-38829 None:intergenic 15.0%
!!! TTGATTTGACACAAAAAATT+AGG + tig0022711:37235-37254 Msa1401520:intron 20.0%
!! TGATTTGACACAAAAAATTA+GGG + tig0022711:37236-37255 Msa1401520:intron 20.0%
!! GAATTAATTGTACAAAACAT+TGG - tig0022711:37563-37582 None:intergenic 20.0%
!! ATTTGATTATTGACATCATT+TGG - tig0022711:37800-37819 None:intergenic 20.0%
!! AAATTTCTTAGCCAAAATAA+CGG + tig0022711:37816-37835 Msa1401520:CDS 20.0%
!! AAAATTTGCATCAAAAACAT+TGG - tig0022711:37961-37980 None:intergenic 20.0%
!!! TTTTAAATCCTCATCTAAAA+GGG - tig0022711:38183-38202 None:intergenic 20.0%
!!! TTTTTAAATCCTCATCTAAA+AGG - tig0022711:38184-38203 None:intergenic 20.0%
!! TTAAATATTTGCCAAAACAA+TGG + tig0022711:38315-38334 Msa1401520:CDS 20.0%
!!! TTGATTTGACACAAAAAATT+AGG + tig0022711:37235-37254 Msa1401520:intron 20.0%
!! TGATTTGACACAAAAAATTA+GGG + tig0022711:37236-37255 Msa1401520:intron 20.0%
!! GAATTAATTGTACAAAACAT+TGG - tig0022711:37563-37582 None:intergenic 20.0%
!! ATTTGATTATTGACATCATT+TGG - tig0022711:37800-37819 None:intergenic 20.0%
!! AAATTTCTTAGCCAAAATAA+CGG + tig0022711:37816-37835 Msa1401520:CDS 20.0%
!! AAAATTTGCATCAAAAACAT+TGG - tig0022711:37961-37980 None:intergenic 20.0%
!!! TTTTAAATCCTCATCTAAAA+GGG - tig0022711:38183-38202 None:intergenic 20.0%
!!! TTTTTAAATCCTCATCTAAA+AGG - tig0022711:38184-38203 None:intergenic 20.0%
!! TTAAATATTTGCCAAAACAA+TGG + tig0022711:38315-38334 Msa1401520:CDS 20.0%
! AGGAAGAAAAAAAGACAATA+TGG + tig0022711:36823-36842 Msa1401520:exon 25.0%
! GGAAGAAAAAAAGACAATAT+GGG + tig0022711:36824-36843 Msa1401520:exon 25.0%
! AAACGACTTATAATTTGAGA+CGG + tig0022711:37475-37494 Msa1401520:intron 25.0%
!!! GCTTTTCTAAAAACATACAA+TGG + tig0022711:37609-37628 Msa1401520:CDS 25.0%
! CAAAGAAAGCAAATTCTTTA+GGG - tig0022711:37896-37915 None:intergenic 25.0%
! TCAAAGAAAGCAAATTCTTT+AGG - tig0022711:37897-37916 None:intergenic 25.0%
!! AAAGAATTTGCTTTCTTTGA+TGG + tig0022711:37897-37916 Msa1401520:CDS 25.0%
! AAAAACATTGGTGTAAGATA+TGG - tig0022711:37949-37968 None:intergenic 25.0%
! ATTTCAGCTCTTGAAAAAAA+TGG + tig0022711:37990-38009 Msa1401520:CDS 25.0%
!!! GATTTAAAAAGTATTGATCC+TGG + tig0022711:38194-38213 Msa1401520:CDS 25.0%
!! TTTGAGATCATGATTGATAT+TGG + tig0022711:38590-38609 Msa1401520:CDS 25.0%
! TTGAGATCATGATTGATATT+GGG + tig0022711:38591-38610 Msa1401520:CDS 25.0%
!! ATGTACTCTAATCCAATTTT+TGG - tig0022711:38650-38669 None:intergenic 25.0%
!! AATTGGATTAGAGTACATAA+TGG + tig0022711:38652-38671 Msa1401520:CDS 25.0%
! AGACTATACAAATAGAGATA+AGG - tig0022711:38705-38724 None:intergenic 25.0%
!!! GTGACTCATTTTTTAATTCT+TGG + tig0022711:38845-38864 Msa1401520:three_prime_UTR 25.0%
! AGGAAGAAAAAAAGACAATA+TGG + tig0022711:36823-36842 Msa1401520:exon 25.0%
! GGAAGAAAAAAAGACAATAT+GGG + tig0022711:36824-36843 Msa1401520:exon 25.0%
! AAACGACTTATAATTTGAGA+CGG + tig0022711:37475-37494 Msa1401520:intron 25.0%
!!! GCTTTTCTAAAAACATACAA+TGG + tig0022711:37609-37628 Msa1401520:CDS 25.0%
! CAAAGAAAGCAAATTCTTTA+GGG - tig0022711:37896-37915 None:intergenic 25.0%
! TCAAAGAAAGCAAATTCTTT+AGG - tig0022711:37897-37916 None:intergenic 25.0%
!! AAAGAATTTGCTTTCTTTGA+TGG + tig0022711:37897-37916 Msa1401520:CDS 25.0%
! AAAAACATTGGTGTAAGATA+TGG - tig0022711:37949-37968 None:intergenic 25.0%
! ATTTCAGCTCTTGAAAAAAA+TGG + tig0022711:37990-38009 Msa1401520:CDS 25.0%
!!! GATTTAAAAAGTATTGATCC+TGG + tig0022711:38194-38213 Msa1401520:CDS 25.0%
!! TTTGAGATCATGATTGATAT+TGG + tig0022711:38590-38609 Msa1401520:CDS 25.0%
! TTGAGATCATGATTGATATT+GGG + tig0022711:38591-38610 Msa1401520:CDS 25.0%
!! ATGTACTCTAATCCAATTTT+TGG - tig0022711:38650-38669 None:intergenic 25.0%
!! AATTGGATTAGAGTACATAA+TGG + tig0022711:38652-38671 Msa1401520:CDS 25.0%
! AGACTATACAAATAGAGATA+AGG - tig0022711:38705-38724 None:intergenic 25.0%
!!! GTGACTCATTTTTTAATTCT+TGG + tig0022711:38845-38864 Msa1401520:three_prime_UTR 25.0%
TCAAAAATAGAAGCAAGTCA+AGG + tig0022711:36803-36822 Msa1401520:five_prime_UTR 30.0%
!! TTTTAGTACGTGCTTTTTGT+TGG + tig0022711:36856-36875 Msa1401520:CDS 30.0%
TTGTATACTAAGCCAAAGTT+TGG + tig0022711:36883-36902 Msa1401520:CDS 30.0%
!! AACCCCATTTTTAGATATGA+AGG - tig0022711:37161-37180 None:intergenic 30.0%
!! CTAAAAATGGGGTTGATATA+AGG + tig0022711:37167-37186 Msa1401520:CDS 30.0%
! ACTTATAATTTGAGACGGAT+GGG + tig0022711:37480-37499 Msa1401520:intron 30.0%
ATAAGGATAATAATCTCACG+TGG + tig0022711:37512-37531 Msa1401520:intron 30.0%
! GTTTTGTACAATTAATTCCC+AGG + tig0022711:37565-37584 Msa1401520:intron 30.0%
!!! ATCATTTGGTTTTGAATGTC+TGG - tig0022711:37786-37805 None:intergenic 30.0%
GGTAGATGTTAAATGTAAGA+GGG - tig0022711:37842-37861 None:intergenic 30.0%
! GCAAATTCTTTAGGGAAATT+AGG - tig0022711:37888-37907 None:intergenic 30.0%
! GCTCTTGAAAAAAATGGTTT+TGG + tig0022711:37996-38015 Msa1401520:CDS 30.0%
GGTTCAATGAATGTTATCAT+TGG + tig0022711:38017-38036 Msa1401520:CDS 30.0%
AATGTTATCATTGGTGAAGT+TGG + tig0022711:38026-38045 Msa1401520:CDS 30.0%
AGTGCTCAAAGATTTAATCA+AGG + tig0022711:38086-38105 Msa1401520:CDS 30.0%
GATAGAATAGTGAAAAAGCA+AGG + tig0022711:38116-38135 Msa1401520:CDS 30.0%
! AAACATGTAAATTTCAGGTG+GGG - tig0022711:38159-38178 None:intergenic 30.0%
! CAAACATGTAAATTTCAGGT+GGG - tig0022711:38160-38179 None:intergenic 30.0%
! TGGGGAATTTTCAATTTTGA+TGG + tig0022711:38233-38252 Msa1401520:CDS 30.0%
ATGAAATACCCTTTGAATCT+TGG + tig0022711:38260-38279 Msa1401520:CDS 30.0%
! GAAATAACACACCATTGTTT+TGG - tig0022711:38329-38348 None:intergenic 30.0%
TTCATCTCAAGCAAATGTAA+TGG + tig0022711:38346-38365 Msa1401520:CDS 30.0%
CTCATACTTTGTGCAAAATT+AGG - tig0022711:38374-38393 None:intergenic 30.0%
AAAGATGCATGTCAATTCAA+TGG + tig0022711:38515-38534 Msa1401520:CDS 30.0%
TCAAAAATAGAAGCAAGTCA+AGG + tig0022711:36803-36822 Msa1401520:five_prime_UTR 30.0%
!! TTTTAGTACGTGCTTTTTGT+TGG + tig0022711:36856-36875 Msa1401520:CDS 30.0%
TTGTATACTAAGCCAAAGTT+TGG + tig0022711:36883-36902 Msa1401520:CDS 30.0%
!! AACCCCATTTTTAGATATGA+AGG - tig0022711:37161-37180 None:intergenic 30.0%
!! CTAAAAATGGGGTTGATATA+AGG + tig0022711:37167-37186 Msa1401520:CDS 30.0%
! ACTTATAATTTGAGACGGAT+GGG + tig0022711:37480-37499 Msa1401520:intron 30.0%
ATAAGGATAATAATCTCACG+TGG + tig0022711:37512-37531 Msa1401520:intron 30.0%
! GTTTTGTACAATTAATTCCC+AGG + tig0022711:37565-37584 Msa1401520:intron 30.0%
!!! ATCATTTGGTTTTGAATGTC+TGG - tig0022711:37786-37805 None:intergenic 30.0%
GGTAGATGTTAAATGTAAGA+GGG - tig0022711:37842-37861 None:intergenic 30.0%
! GCAAATTCTTTAGGGAAATT+AGG - tig0022711:37888-37907 None:intergenic 30.0%
! GCTCTTGAAAAAAATGGTTT+TGG + tig0022711:37996-38015 Msa1401520:CDS 30.0%
GGTTCAATGAATGTTATCAT+TGG + tig0022711:38017-38036 Msa1401520:CDS 30.0%
AATGTTATCATTGGTGAAGT+TGG + tig0022711:38026-38045 Msa1401520:CDS 30.0%
AGTGCTCAAAGATTTAATCA+AGG + tig0022711:38086-38105 Msa1401520:CDS 30.0%
GATAGAATAGTGAAAAAGCA+AGG + tig0022711:38116-38135 Msa1401520:CDS 30.0%
! AAACATGTAAATTTCAGGTG+GGG - tig0022711:38159-38178 None:intergenic 30.0%
! CAAACATGTAAATTTCAGGT+GGG - tig0022711:38160-38179 None:intergenic 30.0%
! TGGGGAATTTTCAATTTTGA+TGG + tig0022711:38233-38252 Msa1401520:CDS 30.0%
ATGAAATACCCTTTGAATCT+TGG + tig0022711:38260-38279 Msa1401520:CDS 30.0%
! GAAATAACACACCATTGTTT+TGG - tig0022711:38329-38348 None:intergenic 30.0%
TTCATCTCAAGCAAATGTAA+TGG + tig0022711:38346-38365 Msa1401520:CDS 30.0%
CTCATACTTTGTGCAAAATT+AGG - tig0022711:38374-38393 None:intergenic 30.0%
AAAGATGCATGTCAATTCAA+TGG + tig0022711:38515-38534 Msa1401520:CDS 30.0%
! AAAAGCACGTACTAAAACGT+TGG - tig0022711:36853-36872 None:intergenic 35.0%
GTGAAGCTTATGAAAGACAA+TGG + tig0022711:36977-36996 Msa1401520:CDS 35.0%
! ATATGAAGGCGGAAACATTT+TGG - tig0022711:37147-37166 None:intergenic 35.0%
TCCGCCTTCATATCTAAAAA+TGG + tig0022711:37154-37173 Msa1401520:CDS 35.0%
!! CCCATTTTTAGATATGAAGG+CGG - tig0022711:37158-37177 None:intergenic 35.0%
CCGCCTTCATATCTAAAAAT+GGG + tig0022711:37155-37174 Msa1401520:CDS 35.0%
CGCCTTCATATCTAAAAATG+GGG + tig0022711:37156-37175 Msa1401520:CDS 35.0%
TGACCAAGGTAGTAATGAAA+AGG - tig0022711:37214-37233 None:intergenic 35.0%
! GACTTATAATTTGAGACGGA+TGG + tig0022711:37479-37498 Msa1401520:intron 35.0%
! CTTATAATTTGAGACGGATG+GGG + tig0022711:37481-37500 Msa1401520:intron 35.0%
!!! GCTTGAATGTTTTTTATGGC+TGG - tig0022711:37657-37676 None:intergenic 35.0%
!!! GGCTGCTTGAATGTTTTTTA+TGG - tig0022711:37661-37680 None:intergenic 35.0%
GTAGACATCAGCATTTAAAG+GGG - tig0022711:37724-37743 None:intergenic 35.0%
GGTAGACATCAGCATTTAAA+GGG - tig0022711:37725-37744 None:intergenic 35.0%
TGGTAGACATCAGCATTTAA+AGG - tig0022711:37726-37745 None:intergenic 35.0%
GGGTAGATGTTAAATGTAAG+AGG - tig0022711:37843-37862 None:intergenic 35.0%
ATATGGAACCATCAACTACA+GGG - tig0022711:37932-37951 None:intergenic 35.0%
! TTATCATTGGTGAAGTTGGT+TGG + tig0022711:38030-38049 Msa1401520:CDS 35.0%
GCAAACATGTAAATTTCAGG+TGG - tig0022711:38161-38180 None:intergenic 35.0%
AGGGCAAACATGTAAATTTC+AGG - tig0022711:38164-38183 None:intergenic 35.0%
AAATACCCTTTGAATCTTGG+TGG + tig0022711:38263-38282 Msa1401520:CDS 35.0%
!! AAATCACTAGTTGGTGCTAA+AGG + tig0022711:38290-38309 Msa1401520:CDS 35.0%
!! AATCACTAGTTGGTGCTAAA+GGG + tig0022711:38291-38310 Msa1401520:CDS 35.0%
TTGTAGTGGTTTAGACACAA+AGG + tig0022711:38442-38461 Msa1401520:CDS 35.0%
TGTAGTGGTTTAGACACAAA+GGG + tig0022711:38443-38462 Msa1401520:CDS 35.0%
AAATGACAACTACCTTGAGA+AGG - tig0022711:38572-38591 None:intergenic 35.0%
! TCTTTTGCTGCACCAAAAAT+TGG + tig0022711:38635-38654 Msa1401520:CDS 35.0%
! AAAAGCACGTACTAAAACGT+TGG - tig0022711:36853-36872 None:intergenic 35.0%
GTGAAGCTTATGAAAGACAA+TGG + tig0022711:36977-36996 Msa1401520:CDS 35.0%
! ATATGAAGGCGGAAACATTT+TGG - tig0022711:37147-37166 None:intergenic 35.0%
TCCGCCTTCATATCTAAAAA+TGG + tig0022711:37154-37173 Msa1401520:CDS 35.0%
!! CCCATTTTTAGATATGAAGG+CGG - tig0022711:37158-37177 None:intergenic 35.0%
CCGCCTTCATATCTAAAAAT+GGG + tig0022711:37155-37174 Msa1401520:CDS 35.0%
CGCCTTCATATCTAAAAATG+GGG + tig0022711:37156-37175 Msa1401520:CDS 35.0%
TGACCAAGGTAGTAATGAAA+AGG - tig0022711:37214-37233 None:intergenic 35.0%
! GACTTATAATTTGAGACGGA+TGG + tig0022711:37479-37498 Msa1401520:intron 35.0%
! CTTATAATTTGAGACGGATG+GGG + tig0022711:37481-37500 Msa1401520:intron 35.0%
!!! GCTTGAATGTTTTTTATGGC+TGG - tig0022711:37657-37676 None:intergenic 35.0%
!!! GGCTGCTTGAATGTTTTTTA+TGG - tig0022711:37661-37680 None:intergenic 35.0%
GTAGACATCAGCATTTAAAG+GGG - tig0022711:37724-37743 None:intergenic 35.0%
GGTAGACATCAGCATTTAAA+GGG - tig0022711:37725-37744 None:intergenic 35.0%
TGGTAGACATCAGCATTTAA+AGG - tig0022711:37726-37745 None:intergenic 35.0%
GGGTAGATGTTAAATGTAAG+AGG - tig0022711:37843-37862 None:intergenic 35.0%
ATATGGAACCATCAACTACA+GGG - tig0022711:37932-37951 None:intergenic 35.0%
! TTATCATTGGTGAAGTTGGT+TGG + tig0022711:38030-38049 Msa1401520:CDS 35.0%
GCAAACATGTAAATTTCAGG+TGG - tig0022711:38161-38180 None:intergenic 35.0%
AGGGCAAACATGTAAATTTC+AGG - tig0022711:38164-38183 None:intergenic 35.0%
AAATACCCTTTGAATCTTGG+TGG + tig0022711:38263-38282 Msa1401520:CDS 35.0%
!! AAATCACTAGTTGGTGCTAA+AGG + tig0022711:38290-38309 Msa1401520:CDS 35.0%
!! AATCACTAGTTGGTGCTAAA+GGG + tig0022711:38291-38310 Msa1401520:CDS 35.0%
TTGTAGTGGTTTAGACACAA+AGG + tig0022711:38442-38461 Msa1401520:CDS 35.0%
TGTAGTGGTTTAGACACAAA+GGG + tig0022711:38443-38462 Msa1401520:CDS 35.0%
AAATGACAACTACCTTGAGA+AGG - tig0022711:38572-38591 None:intergenic 35.0%
! TCTTTTGCTGCACCAAAAAT+TGG + tig0022711:38635-38654 Msa1401520:CDS 35.0%
CTAAGCCAAAGTTTGGCAAA+AGG + tig0022711:36890-36909 Msa1401520:CDS 40.0%
TCCTCTTCCAGCTCAAATAA+TGG + tig0022711:36955-36974 Msa1401520:CDS 40.0%
ACCATTATTTGAGCTGGAAG+AGG - tig0022711:36959-36978 None:intergenic 40.0%
AGCTTCACCATTATTTGAGC+TGG - tig0022711:36965-36984 None:intergenic 40.0%
! GAATTCTGGCATTCAGGTTA+TGG + tig0022711:37054-37073 Msa1401520:CDS 40.0%
AGTGAATCCAAGAGGTCATT+GGG - tig0022711:37088-37107 None:intergenic 40.0%
AAGTGAATCCAAGAGGTCAT+TGG - tig0022711:37089-37108 None:intergenic 40.0%
!! TGCAATAGCAGCATTGACAT+TGG - tig0022711:37116-37135 None:intergenic 40.0%
ATGTCAATGCTGCTATTGCA+TGG + tig0022711:37116-37135 Msa1401520:CDS 40.0%
TGTCAATGCTGCTATTGCAT+GGG + tig0022711:37117-37136 Msa1401520:CDS 40.0%
CCAAGGTAGTAATGAAAAGG+AGG - tig0022711:37211-37230 None:intergenic 40.0%
! CCTCCTTTTCATTACTACCT+TGG + tig0022711:37208-37227 Msa1401520:intron 40.0%
TGTGTCAAATCAAGTGACCA+AGG - tig0022711:37228-37247 None:intergenic 40.0%
! CGGATGGGGTACTTATTATA+AGG + tig0022711:37495-37514 Msa1401520:intron 40.0%
TTACCAACTGCAACATACCT+GGG - tig0022711:37585-37604 None:intergenic 40.0%
ATTACCAACTGCAACATACC+TGG - tig0022711:37586-37605 None:intergenic 40.0%
AAGCAGCCCTTATAAAAGCA+GGG + tig0022711:37673-37692 Msa1401520:CDS 40.0%
!! GCCTAACCCTGCTTTTATAA+GGG - tig0022711:37682-37701 None:intergenic 40.0%
!! TGCCTAACCCTGCTTTTATA+AGG - tig0022711:37683-37702 None:intergenic 40.0%
! ATGTAAGAGGGCCGTTATTT+TGG - tig0022711:37830-37849 None:intergenic 40.0%
CAGCATCAAGGCTTAGAAAA+GGG - tig0022711:37863-37882 None:intergenic 40.0%
TCAGCATCAAGGCTTAGAAA+AGG - tig0022711:37864-37883 None:intergenic 40.0%
GGAAATTAGGATCAGCATCA+AGG - tig0022711:37875-37894 None:intergenic 40.0%
TATGGAACCATCAACTACAG+GGG - tig0022711:37931-37950 None:intergenic 40.0%
GATATGGAACCATCAACTAC+AGG - tig0022711:37933-37952 None:intergenic 40.0%
GCATTTGATGTTCCATCAGT+TGG - tig0022711:38056-38075 None:intergenic 40.0%
! ATGTAAATTTCAGGTGGGGT+AGG - tig0022711:38155-38174 None:intergenic 40.0%
! CATGTTTGCCCTTTTAGATG+AGG + tig0022711:38172-38191 Msa1401520:CDS 40.0%
TTCCCCAATGTCTCTCAAAT+GGG - tig0022711:38220-38239 None:intergenic 40.0%
ATTCCCCAATGTCTCTCAAA+TGG - tig0022711:38221-38240 None:intergenic 40.0%
TTCCACCACCAAGATTCAAA+GGG - tig0022711:38271-38290 None:intergenic 40.0%
TTTCCACCACCAAGATTCAA+AGG - tig0022711:38272-38291 None:intergenic 40.0%
!! ATCACTAGTTGGTGCTAAAG+GGG + tig0022711:38292-38311 Msa1401520:CDS 40.0%
AGAAGGTGAAGGATCAATGT+TGG - tig0022711:38555-38574 None:intergenic 40.0%
ATTGATCCTTCACCTTCTCA+AGG + tig0022711:38557-38576 Msa1401520:CDS 40.0%
!! TTTTGGTGCAGCAAAAGAAG+TGG - tig0022711:38633-38652 None:intergenic 40.0%
AGAGTACATAATGGTCATGC+TGG + tig0022711:38661-38680 Msa1401520:CDS 40.0%
CTAAGCCAAAGTTTGGCAAA+AGG + tig0022711:36890-36909 Msa1401520:CDS 40.0%
TCCTCTTCCAGCTCAAATAA+TGG + tig0022711:36955-36974 Msa1401520:CDS 40.0%
ACCATTATTTGAGCTGGAAG+AGG - tig0022711:36959-36978 None:intergenic 40.0%
AGCTTCACCATTATTTGAGC+TGG - tig0022711:36965-36984 None:intergenic 40.0%
! GAATTCTGGCATTCAGGTTA+TGG + tig0022711:37054-37073 Msa1401520:CDS 40.0%
AGTGAATCCAAGAGGTCATT+GGG - tig0022711:37088-37107 None:intergenic 40.0%
AAGTGAATCCAAGAGGTCAT+TGG - tig0022711:37089-37108 None:intergenic 40.0%
!! TGCAATAGCAGCATTGACAT+TGG - tig0022711:37116-37135 None:intergenic 40.0%
ATGTCAATGCTGCTATTGCA+TGG + tig0022711:37116-37135 Msa1401520:CDS 40.0%
TGTCAATGCTGCTATTGCAT+GGG + tig0022711:37117-37136 Msa1401520:CDS 40.0%
CCAAGGTAGTAATGAAAAGG+AGG - tig0022711:37211-37230 None:intergenic 40.0%
! CCTCCTTTTCATTACTACCT+TGG + tig0022711:37208-37227 Msa1401520:intron 40.0%
TGTGTCAAATCAAGTGACCA+AGG - tig0022711:37228-37247 None:intergenic 40.0%
! CGGATGGGGTACTTATTATA+AGG + tig0022711:37495-37514 Msa1401520:intron 40.0%
TTACCAACTGCAACATACCT+GGG - tig0022711:37585-37604 None:intergenic 40.0%
ATTACCAACTGCAACATACC+TGG - tig0022711:37586-37605 None:intergenic 40.0%
AAGCAGCCCTTATAAAAGCA+GGG + tig0022711:37673-37692 Msa1401520:CDS 40.0%
!! GCCTAACCCTGCTTTTATAA+GGG - tig0022711:37682-37701 None:intergenic 40.0%
!! TGCCTAACCCTGCTTTTATA+AGG - tig0022711:37683-37702 None:intergenic 40.0%
! ATGTAAGAGGGCCGTTATTT+TGG - tig0022711:37830-37849 None:intergenic 40.0%
CAGCATCAAGGCTTAGAAAA+GGG - tig0022711:37863-37882 None:intergenic 40.0%
TCAGCATCAAGGCTTAGAAA+AGG - tig0022711:37864-37883 None:intergenic 40.0%
GGAAATTAGGATCAGCATCA+AGG - tig0022711:37875-37894 None:intergenic 40.0%
TATGGAACCATCAACTACAG+GGG - tig0022711:37931-37950 None:intergenic 40.0%
GATATGGAACCATCAACTAC+AGG - tig0022711:37933-37952 None:intergenic 40.0%
GCATTTGATGTTCCATCAGT+TGG - tig0022711:38056-38075 None:intergenic 40.0%
! ATGTAAATTTCAGGTGGGGT+AGG - tig0022711:38155-38174 None:intergenic 40.0%
! CATGTTTGCCCTTTTAGATG+AGG + tig0022711:38172-38191 Msa1401520:CDS 40.0%
TTCCCCAATGTCTCTCAAAT+GGG - tig0022711:38220-38239 None:intergenic 40.0%
ATTCCCCAATGTCTCTCAAA+TGG - tig0022711:38221-38240 None:intergenic 40.0%
TTCCACCACCAAGATTCAAA+GGG - tig0022711:38271-38290 None:intergenic 40.0%
TTTCCACCACCAAGATTCAA+AGG - tig0022711:38272-38291 None:intergenic 40.0%
!! ATCACTAGTTGGTGCTAAAG+GGG + tig0022711:38292-38311 Msa1401520:CDS 40.0%
AGAAGGTGAAGGATCAATGT+TGG - tig0022711:38555-38574 None:intergenic 40.0%
ATTGATCCTTCACCTTCTCA+AGG + tig0022711:38557-38576 Msa1401520:CDS 40.0%
!! TTTTGGTGCAGCAAAAGAAG+TGG - tig0022711:38633-38652 None:intergenic 40.0%
AGAGTACATAATGGTCATGC+TGG + tig0022711:38661-38680 Msa1401520:CDS 40.0%
! GGGTACCTTTTGCCAAACTT+TGG - tig0022711:36898-36917 None:intergenic 45.0%
!! AGTTTGGCAAAAGGTACCCT+TGG + tig0022711:36899-36918 Msa1401520:CDS 45.0%
CCAATTGCAAGCAAAGCCAA+GGG - tig0022711:36918-36937 None:intergenic 45.0%
!! CCTTGGCTTTGCTTGCAATT+GGG + tig0022711:36916-36935 Msa1401520:CDS 45.0%
!! CTTGGCTTTGCTTGCAATTG+GGG + tig0022711:36917-36936 Msa1401520:CDS 45.0%
! GTTGTTTGAAGCTGATCCCA+TGG + tig0022711:37015-37034 Msa1401520:CDS 45.0%
TCTTGGGAATTCTGGCATTC+AGG + tig0022711:37048-37067 Msa1401520:CDS 45.0%
! TCTGGCATTCAGGTTATGGT+TGG + tig0022711:37058-37077 Msa1401520:CDS 45.0%
TGGAAGCAAGTGAATCCAAG+AGG - tig0022711:37096-37115 None:intergenic 45.0%
ATTCCCAGGTATGTTGCAGT+TGG + tig0022711:37579-37598 Msa1401520:intron 45.0%
CAAGCAGCCCTTATAAAAGC+AGG + tig0022711:37672-37691 Msa1401520:CDS 45.0%
GCCCTTATAAAAGCAGGGTT+AGG + tig0022711:37678-37697 Msa1401520:CDS 45.0%
GATGTCTACCAAAGTGACAC+TGG + tig0022711:37735-37754 Msa1401520:CDS 45.0%
!! ATGGAAGACCAGTGTCACTT+TGG - tig0022711:37746-37765 None:intergenic 45.0%
TGGCCCATTTGAGAGACATT+GGG + tig0022711:38214-38233 Msa1401520:CDS 45.0%
TACCCTTTGAATCTTGGTGG+TGG + tig0022711:38266-38285 Msa1401520:CDS 45.0%
!! GGTGGTGGAAAATCACTAGT+TGG + tig0022711:38281-38300 Msa1401520:CDS 45.0%
GATTGTACATCTCTTGCTCC+TGG + tig0022711:38413-38432 Msa1401520:CDS 45.0%
AAACCACTACAAGAAGAGCC+AGG - tig0022711:38434-38453 None:intergenic 45.0%
CAACTACCTTGAGAAGGTGA+AGG - tig0022711:38566-38585 None:intergenic 45.0%
GAGATACAAGTAGCACAGTG+TGG - tig0022711:38872-38891 None:intergenic 45.0%
!! CTGTGCTACTTGTATCTCGA+CGG + tig0022711:38874-38893 Msa1401520:three_prime_UTR 45.0%
! GGGTACCTTTTGCCAAACTT+TGG - tig0022711:36898-36917 None:intergenic 45.0%
!! AGTTTGGCAAAAGGTACCCT+TGG + tig0022711:36899-36918 Msa1401520:CDS 45.0%
CCAATTGCAAGCAAAGCCAA+GGG - tig0022711:36918-36937 None:intergenic 45.0%
!! CCTTGGCTTTGCTTGCAATT+GGG + tig0022711:36916-36935 Msa1401520:CDS 45.0%
!! CTTGGCTTTGCTTGCAATTG+GGG + tig0022711:36917-36936 Msa1401520:CDS 45.0%
! GTTGTTTGAAGCTGATCCCA+TGG + tig0022711:37015-37034 Msa1401520:CDS 45.0%
TCTTGGGAATTCTGGCATTC+AGG + tig0022711:37048-37067 Msa1401520:CDS 45.0%
! TCTGGCATTCAGGTTATGGT+TGG + tig0022711:37058-37077 Msa1401520:CDS 45.0%
TGGAAGCAAGTGAATCCAAG+AGG - tig0022711:37096-37115 None:intergenic 45.0%
ATTCCCAGGTATGTTGCAGT+TGG + tig0022711:37579-37598 Msa1401520:intron 45.0%
CAAGCAGCCCTTATAAAAGC+AGG + tig0022711:37672-37691 Msa1401520:CDS 45.0%
GCCCTTATAAAAGCAGGGTT+AGG + tig0022711:37678-37697 Msa1401520:CDS 45.0%
GATGTCTACCAAAGTGACAC+TGG + tig0022711:37735-37754 Msa1401520:CDS 45.0%
!! ATGGAAGACCAGTGTCACTT+TGG - tig0022711:37746-37765 None:intergenic 45.0%
TGGCCCATTTGAGAGACATT+GGG + tig0022711:38214-38233 Msa1401520:CDS 45.0%
TACCCTTTGAATCTTGGTGG+TGG + tig0022711:38266-38285 Msa1401520:CDS 45.0%
!! GGTGGTGGAAAATCACTAGT+TGG + tig0022711:38281-38300 Msa1401520:CDS 45.0%
GATTGTACATCTCTTGCTCC+TGG + tig0022711:38413-38432 Msa1401520:CDS 45.0%
AAACCACTACAAGAAGAGCC+AGG - tig0022711:38434-38453 None:intergenic 45.0%
CAACTACCTTGAGAAGGTGA+AGG - tig0022711:38566-38585 None:intergenic 45.0%
GAGATACAAGTAGCACAGTG+TGG - tig0022711:38872-38891 None:intergenic 45.0%
!! CCCTTGGCTTTGCTTGCAAT+TGG + tig0022711:36915-36934 Msa1401520:CDS 50.0%
CCCAATTGCAAGCAAAGCCA+AGG - tig0022711:36919-36938 None:intergenic 50.0%
CTGAAGGCTCTTGGGAATTC+TGG + tig0022711:37040-37059 Msa1401520:CDS 50.0%
TGGCATACCCAATGACCTCT+TGG + tig0022711:37078-37097 Msa1401520:CDS 50.0%
CAATGCTGCTATTGCATGGG+TGG + tig0022711:37120-37139 Msa1401520:CDS 50.0%
!! AGTGACACTGGTCTTCCATC+AGG + tig0022711:37747-37766 Msa1401520:CDS 50.0%
! GGTCTAAAGTGTCCACCTGA+TGG - tig0022711:37765-37784 None:intergenic 50.0%
! GAAGTTGGTTGGCCAACTGA+TGG + tig0022711:38041-38060 Msa1401520:CDS 50.0%
! TCAGGTGGGGTAGGTCTTTT+AGG - tig0022711:38146-38165 None:intergenic 50.0%
CAATGTCTCTCAAATGGGCC+AGG - tig0022711:38215-38234 None:intergenic 50.0%
CTGGCCCATTTGAGAGACAT+TGG + tig0022711:38213-38232 Msa1401520:CDS 50.0%
GGCCCATTTGAGAGACATTG+GGG + tig0022711:38215-38234 Msa1401520:CDS 50.0%
!! CCCTTGGCTTTGCTTGCAAT+TGG + tig0022711:36915-36934 Msa1401520:CDS 50.0%
CCCAATTGCAAGCAAAGCCA+AGG - tig0022711:36919-36938 None:intergenic 50.0%
CTGAAGGCTCTTGGGAATTC+TGG + tig0022711:37040-37059 Msa1401520:CDS 50.0%
TGGCATACCCAATGACCTCT+TGG + tig0022711:37078-37097 Msa1401520:CDS 50.0%
CAATGCTGCTATTGCATGGG+TGG + tig0022711:37120-37139 Msa1401520:CDS 50.0%
!! AGTGACACTGGTCTTCCATC+AGG + tig0022711:37747-37766 Msa1401520:CDS 50.0%
! GGTCTAAAGTGTCCACCTGA+TGG - tig0022711:37765-37784 None:intergenic 50.0%
! GAAGTTGGTTGGCCAACTGA+TGG + tig0022711:38041-38060 Msa1401520:CDS 50.0%
! TCAGGTGGGGTAGGTCTTTT+AGG - tig0022711:38146-38165 None:intergenic 50.0%
CAATGTCTCTCAAATGGGCC+AGG - tig0022711:38215-38234 None:intergenic 50.0%
CTGGCCCATTTGAGAGACAT+TGG + tig0022711:38213-38232 Msa1401520:CDS 50.0%
GGCCCATTTGAGAGACATTG+GGG + tig0022711:38215-38234 Msa1401520:CDS 50.0%
! AGCTGATCCCATGGCACTGA+AGG + tig0022711:37024-37043 Msa1401520:CDS 55.0%
CCAAGAGCCTTCAGTGCCAT+GGG - tig0022711:37034-37053 None:intergenic 55.0%
! CCATGGCACTGAAGGCTCTT+GGG + tig0022711:37032-37051 Msa1401520:CDS 55.0%
!! GACACTGGTCTTCCATCAGG+TGG + tig0022711:37750-37769 Msa1401520:CDS 55.0%
TCTGCTGCCCCTGTAGTTGA+TGG + tig0022711:37921-37940 Msa1401520:CDS 55.0%
! GCTCCTGGCTCTTCTTGTAG+TGG + tig0022711:38428-38447 Msa1401520:CDS 55.0%
! AGCTGATCCCATGGCACTGA+AGG + tig0022711:37024-37043 Msa1401520:CDS 55.0%
CCAAGAGCCTTCAGTGCCAT+GGG - tig0022711:37034-37053 None:intergenic 55.0%
! CCATGGCACTGAAGGCTCTT+GGG + tig0022711:37032-37051 Msa1401520:CDS 55.0%
!! GACACTGGTCTTCCATCAGG+TGG + tig0022711:37750-37769 Msa1401520:CDS 55.0%
TCTGCTGCCCCTGTAGTTGA+TGG + tig0022711:37921-37940 Msa1401520:CDS 55.0%
! GCTCCTGGCTCTTCTTGTAG+TGG + tig0022711:38428-38447 Msa1401520:CDS 55.0%
! CCCATGGCACTGAAGGCTCT+TGG + tig0022711:37031-37050 Msa1401520:CDS 60.0%
CCCAAGAGCCTTCAGTGCCA+TGG - tig0022711:37035-37054 None:intergenic 60.0%
! CCCATGGCACTGAAGGCTCT+TGG + tig0022711:37031-37050 Msa1401520:CDS 60.0%
CCCAAGAGCCTTCAGTGCCA+TGG - tig0022711:37035-37054 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0022711 gene 36788 38894 36788 ID=Msa1401520;Name=Msa1401520
tig0022711 mRNA 36788 38894 36788 ID=Msa1401520-mRNA-1;Parent=Msa1401520;Name=Msa1401520-mRNA-1;_AED=0.00;_eAED=0.00;_QI=54|1|1|1|1|1|2|173|493
tig0022711 exon 36788 37188 36788 ID=Msa1401520-mRNA-1:exon:18385;Parent=Msa1401520-mRNA-1
tig0022711 exon 37587 38894 37587 ID=Msa1401520-mRNA-1:exon:18386;Parent=Msa1401520-mRNA-1
tig0022711 five_prime_UTR 36788 36841 36788 ID=Msa1401520-mRNA-1:five_prime_utr;Parent=Msa1401520-mRNA-1
tig0022711 CDS 36842 37188 36842 ID=Msa1401520-mRNA-1:cds;Parent=Msa1401520-mRNA-1
tig0022711 CDS 37587 38721 37587 ID=Msa1401520-mRNA-1:cds;Parent=Msa1401520-mRNA-1
tig0022711 three_prime_UTR 38722 38894 38722 ID=Msa1401520-mRNA-1:three_prime_utr;Parent=Msa1401520-mRNA-1
Gene Sequence

>Msa1401520

ATGGGATTCCAACGTTTTAGTACGTGCTTTTTGTTGGCACTTTGTATACTAAGCCAAAGTTTGGCAAAAGGTACCCTTGGCTTTGCTTGCAATTGGGGAACGATTACATCGCATCCTCTTCCAGCTCAAATAATGGTGAAGCTTATGAAAGACAATGGAATCAACAAAGTGAAGTTGTTTGAAGCTGATCCCATGGCACTGAAGGCTCTTGGGAATTCTGGCATTCAGGTTATGGTTGGCATACCCAATGACCTCTTGGATTCACTTGCTTCCAATGTCAATGCTGCTATTGCATGGGTGGACCAAAATGTTTCCGCCTTCATATCTAAAAATGGGGTTGATATAAGGTATGTTGCAGTTGGTAATGAAGCTTTTCTAAAAACATACAATGGACGATTTGTGCAATCAACATTTCCAGCCATAAAAAACATTCAAGCAGCCCTTATAAAAGCAGGGTTAGGCAGACAAGTAAAAGTAACAACCCCTTTAAATGCTGATGTCTACCAAAGTGACACTGGTCTTCCATCAGGTGGACACTTTAGACCAGACATTCAAAACCAAATGATGTCAATAATCAAATTTCTTAGCCAAAATAACGGCCCTCTTACATTTAACATCTACCCTTTTCTAAGCCTTGATGCTGATCCTAATTTCCCTAAAGAATTTGCTTTCTTTGATGGTTCTGCTGCCCCTGTAGTTGATGGTTCCATATCTTACACCAATGTTTTTGATGCAAATTTTGATACACTTATTTCAGCTCTTGAAAAAAATGGTTTTGGTTCAATGAATGTTATCATTGGTGAAGTTGGTTGGCCAACTGATGGAACATCAAATGCTAATATAAAAAGTGCTCAAAGATTTAATCAAGGACTTGTTGATAGAATAGTGAAAAAGCAAGGAACTCCTAAAAGACCTACCCCACCTGAAATTTACATGTTTGCCCTTTTAGATGAGGATTTAAAAAGTATTGATCCTGGCCCATTTGAGAGACATTGGGGAATTTTCAATTTTGATGGATCTATGAAATACCCTTTGAATCTTGGTGGTGGAAAATCACTAGTTGGTGCTAAAGGGGTTAAATATTTGCCAAAACAATGGTGTGTTATTTCATCTCAAGCAAATGTAATGGATCCTAATTTTGCACAAAGTATGAGCAAAGCTTGTACATACGCTGATTGTACATCTCTTGCTCCTGGCTCTTCTTGTAGTGGTTTAGACACAAAGGGTAATGCTTCATATGCATTTAATATGTATTATCAAAGAATGGATCAACGTAAAGATGCATGTCAATTCAATGGTTTATCAGTTGTTACCAACATTGATCCTTCACCTTCTCAAGGTAGTTGTCATTTTGAGATCATGATTGATATTGGGAAGCATGAAACTAAGTCCACTTCTTTTGCTGCACCAAAAATTGGATTAGAGTACATAATGGTCATGCTGGTATCAAGCTTCAGTTTCACCTTATCTCTATTTGTATAG
Protein sequence

>Msa1401520

MGFQRFSTCFLLALCILSQSLAKGTLGFACNWGTITSHPLPAQIMVKLMKDNGINKVKLFEADPMALKALGNSGIQVMVGIPNDLLDSLASNVNAAIAWVDQNVSAFISKNGVDIRYVAVGNEAFLKTYNGRFVQSTFPAIKNIQAALIKAGLGRQVKVTTPLNADVYQSDTGLPSGGHFRPDIQNQMMSIIKFLSQNNGPLTFNIYPFLSLDADPNFPKEFAFFDGSAAPVVDGSISYTNVFDANFDTLISALEKNGFGSMNVIIGEVGWPTDGTSNANIKSAQRFNQGLVDRIVKKQGTPKRPTPPEIYMFALLDEDLKSIDPGPFERHWGIFNFDGSMKYPLNLGGGKSLVGAKGVKYLPKQWCVISSQANVMDPNFAQSMSKACTYADCTSLAPGSSCSGLDTKGNASYAFNMYYQRMDQRKDACQFNGLSVVTNIDPSPSQGSCHFEIMIDIGKHETKSTSFAAPKIGLEYIMVMLVSSFSFTLSLFV*