Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855720 | XP_003616166.2 | 94.454 | 559 | 11 | 2 | 1 | 539 | 1 | 559 | 0.0 | 1087 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855720 | sp|Q9FX32|SUS6_ARATH | 67.812 | 553 | 158 | 2 | 7 | 539 | 9 | 561 | 0.0 | 794 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855720 | G7KFT7 | 94.454 | 559 | 11 | 2 | 1 | 539 | 1 | 559 | 0.0 | 1087 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0736440 | Msa0855720 | 0.801425 | 9.061103e-49 | -8.615850e-47 |
| Msa0740090 | Msa0855720 | 0.804674 | 1.928923e-49 | -8.615850e-47 |
| Msa0815520 | Msa0855720 | 0.913736 | 4.352564e-84 | -8.615850e-47 |
| Msa0268100 | Msa0855720 | 0.820444 | 6.837482e-53 | -8.615850e-47 |
| Msa0855720 | Msa1219820 | 0.823691 | 1.208339e-53 | -8.615850e-47 |
| Msa0855720 | Msa1267050 | 0.810133 | 1.341410e-50 | -8.615850e-47 |
| Msa0855720 | Msa1267180 | 0.808778 | 2.620716e-50 | -8.615850e-47 |
| Msa0855720 | Msa1401520 | 0.802278 | 6.053383e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855720 | MtrunA17_Chr5g0433761 | 94.454 | 559 | 11 | 2 | 1 | 539 | 1 | 559 | 0.0 | 1087 |
| Msa0855720 | MtrunA17_Chr3g0109841 | 78.292 | 562 | 99 | 3 | 1 | 539 | 1 | 562 | 0.0 | 914 |
| Msa0855720 | MtrunA17_Chr6g0481131 | 67.093 | 547 | 160 | 2 | 13 | 539 | 15 | 561 | 0.0 | 761 |
| Msa0855720 | MtrunA17_Chr6g0481171 | 68.298 | 429 | 121 | 1 | 126 | 539 | 5 | 433 | 0.0 | 600 |
| Msa0855720 | MtrunA17_Chr7g0269581 | 52.095 | 549 | 241 | 3 | 9 | 538 | 9 | 554 | 0.0 | 590 |
| Msa0855720 | MtrunA17_Chr1g0195241 | 54.360 | 539 | 225 | 3 | 34 | 553 | 16 | 552 | 0.0 | 589 |
| Msa0855720 | MtrunA17_Chr4g0070011 | 50.903 | 554 | 251 | 3 | 4 | 538 | 3 | 554 | 0.0 | 580 |
| Msa0855720 | MtrunA17_Chr2g0301621 | 50.725 | 552 | 251 | 3 | 6 | 538 | 3 | 552 | 0.0 | 578 |
| Msa0855720 | MtrunA17_Chr4g0009181 | 50.746 | 67 | 32 | 1 | 7 | 72 | 10 | 76 | 1.75e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855720 | AT1G73370.3 | 67.812 | 553 | 158 | 2 | 7 | 539 | 9 | 561 | 0.0 | 794 |
| Msa0855720 | AT1G73370.1 | 67.812 | 553 | 158 | 2 | 7 | 539 | 9 | 561 | 0.0 | 794 |
| Msa0855720 | AT5G37180.1 | 65.961 | 567 | 166 | 5 | 10 | 555 | 5 | 565 | 0.0 | 768 |
| Msa0855720 | AT1G73370.2 | 68.665 | 517 | 142 | 2 | 43 | 539 | 1 | 517 | 0.0 | 743 |
| Msa0855720 | AT4G02280.1 | 52.995 | 551 | 240 | 2 | 7 | 538 | 6 | 556 | 0.0 | 608 |
| Msa0855720 | AT5G49190.1 | 50.991 | 555 | 241 | 4 | 9 | 538 | 5 | 553 | 0.0 | 576 |
| Msa0855720 | AT5G49190.2 | 52.444 | 532 | 222 | 4 | 32 | 538 | 18 | 543 | 0.0 | 570 |
| Msa0855720 | AT5G37180.2 | 71.240 | 379 | 92 | 2 | 192 | 555 | 1 | 377 | 0.0 | 567 |
| Msa0855720 | AT5G20830.3 | 50.543 | 552 | 250 | 4 | 7 | 538 | 8 | 556 | 0.0 | 556 |
| Msa0855720 | AT5G20830.2 | 50.543 | 552 | 250 | 4 | 7 | 538 | 8 | 556 | 0.0 | 556 |
| Msa0855720 | AT5G20830.1 | 50.543 | 552 | 250 | 4 | 7 | 538 | 8 | 556 | 0.0 | 556 |
| Msa0855720 | AT5G49190.3 | 55.258 | 485 | 198 | 2 | 73 | 538 | 3 | 487 | 0.0 | 556 |
| Msa0855720 | AT3G43190.2 | 49.729 | 553 | 255 | 4 | 6 | 538 | 7 | 556 | 0.0 | 549 |
| Msa0855720 | AT3G43190.1 | 49.729 | 553 | 255 | 4 | 6 | 538 | 7 | 556 | 0.0 | 549 |
| Msa0855720 | AT5G37180.3 | 71.340 | 321 | 75 | 2 | 250 | 555 | 1 | 319 | 4.28e-164 | 479 |
Find 181 sgRNAs with CRISPR-Local
Find 371 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCAGTTCATGGTTATTT+TGG | 0.070641 | 5_4:+49578648 | Msa0855720:CDS |
| TGCAAACAAGTTGGTAAATA+TGG | 0.130999 | 5_4:+49581444 | Msa0855720:three_prime_UTR |
| TTCCATTAGGTCCAAAATTT+TGG | 0.135688 | 5_4:-49579576 | None:intergenic |
| TAATTTCTTATTCAAGAATT+TGG | 0.152548 | 5_4:+49581543 | Msa0855720:three_prime_UTR |
| GGATGCAACAACCAAAATTT+TGG | 0.164817 | 5_4:+49579565 | Msa0855720:intron |
| GAAGAAGACAAGGTTAATTT+AGG | 0.178184 | 5_4:-49577902 | None:intergenic |
| GGCCTATGTAGAGTTGTTTC+TGG | 0.186575 | 5_4:+49580103 | Msa0855720:CDS |
| GGTTATTACTTGGATCTTAA+TGG | 0.206980 | 5_4:+49582385 | Msa0855720:intron |
| CTTGCCATCGAGAAGATTAT+TGG | 0.212816 | 5_4:-49580726 | None:intergenic |
| GACTTTGGAGCATTTGATAT+TGG | 0.226670 | 5_4:+49577875 | Msa0855720:CDS |
| TGACATGAGAAGTGATATTT+AGG | 0.235805 | 5_4:-49579848 | None:intergenic |
| AAATTACACGGATGGAAATT+TGG | 0.236852 | 5_4:+49579622 | Msa0855720:CDS |
| CAAACCTTCCAGCAATTTCT+TGG | 0.245784 | 5_4:-49579928 | None:intergenic |
| TGTATAACCTTCTTATATAT+TGG | 0.247172 | 5_4:+49582477 | Msa0855720:three_prime_UTR |
| TTCAAGGACAACTGGGAAAT+TGG | 0.253007 | 5_4:+49577964 | Msa0855720:CDS |
| GGGAAGCCAGATCTTGTTAT+TGG | 0.282391 | 5_4:+49579599 | Msa0855720:CDS |
| TGGGGAACACTTACACCTTT+TGG | 0.282985 | 5_4:+49581464 | Msa0855720:three_prime_UTR |
| ATCACTACTTTGAAAATTGT+TGG | 0.288854 | 5_4:-49578624 | None:intergenic |
| TTTGCTAAGTACCTAGAAAA+AGG | 0.296994 | 5_4:+49576912 | Msa0855720:CDS |
| CATGCTGCATTTACTCTTCC+AGG | 0.298265 | 5_4:+49580082 | Msa0855720:CDS |
| CATATGTAGCCTTTGCAATT+AGG | 0.299383 | 5_4:+49577269 | Msa0855720:CDS |
| GGTTGCTTGTCAACTGGTTT+TGG | 0.303052 | 5_4:-49581710 | None:intergenic |
| CATGAAACTTCATGAATTAA+TGG | 0.308219 | 5_4:+49576944 | Msa0855720:CDS |
| ACTTTGGAGCATTTGATATT+GGG | 0.313644 | 5_4:+49577876 | Msa0855720:CDS |
| TTAACCTTGTCTTCTTCAAT+TGG | 0.317572 | 5_4:+49577908 | Msa0855720:CDS |
| TTCTTAACTTCAAGGACAAC+TGG | 0.323354 | 5_4:+49577956 | Msa0855720:CDS |
| TTGTCTTCTTCAATTGGAAA+TGG | 0.326217 | 5_4:+49577914 | Msa0855720:CDS |
| CACACTTTCAGGTTATTACT+TGG | 0.335978 | 5_4:+49582375 | Msa0855720:intron |
| CCTGCTTTGTATGAAGCATT+TGG | 0.338153 | 5_4:+49581023 | Msa0855720:three_prime_UTR |
| TTTGGGCAAGCAGATGTTCT+TGG | 0.338987 | 5_4:+49578666 | Msa0855720:CDS |
| AAATGAAAGAAATTATGTTT+TGG | 0.349393 | 5_4:+49576995 | Msa0855720:CDS |
| GTAGTGATCTTCTCAGTTCA+TGG | 0.349932 | 5_4:+49578639 | Msa0855720:CDS |
| TTTCAAAGTTCTTAACTTCA+AGG | 0.358243 | 5_4:+49577948 | Msa0855720:CDS |
| ACAACAGGTAGTTTACATAT+TGG | 0.359818 | 5_4:+49578994 | Msa0855720:intron |
| ACACCCTTTCCTTGAATTTG+AGG | 0.366684 | 5_4:-49577369 | None:intergenic |
| GCAAAGTAGACCCATCATAT+TGG | 0.374838 | 5_4:+49581204 | Msa0855720:three_prime_UTR |
| CTATCTCTAATTTCTTTCAA+TGG | 0.382766 | 5_4:+49576800 | Msa0855720:exon |
| ATCAAAAGATAGAGAGGAAA+TGG | 0.388957 | 5_4:+49580860 | Msa0855720:three_prime_UTR |
| GGAGGTTCATCACTTGGAAT+AGG | 0.389482 | 5_4:-49581689 | None:intergenic |
| ATAAGAAATTATAGAACATA+TGG | 0.396630 | 5_4:-49581531 | None:intergenic |
| GCAAACAAGTTGGTAAATAT+GGG | 0.397058 | 5_4:+49581445 | Msa0855720:three_prime_UTR |
| AGCAATTTCTTGGTATGTAC+TGG | 0.397249 | 5_4:-49579918 | None:intergenic |
| TCACTTCTCATGTCAATTCA+TGG | 0.397520 | 5_4:+49579856 | Msa0855720:CDS |
| TAAAGAATTTGTGCGCTTCA+AGG | 0.397654 | 5_4:-49576835 | None:intergenic |
| ATTTCCAGGTTCACAGGATC+CGG | 0.402834 | 5_4:-49578585 | None:intergenic |
| TCACTAATGGCTAGAAAACT+TGG | 0.405015 | 5_4:+49579650 | Msa0855720:CDS |
| TTAGGCCTAATCCAGGAGTC+TGG | 0.411626 | 5_4:+49577287 | Msa0855720:CDS |
| TTCATTTATGCGCTGCAATC+CGG | 0.411646 | 5_4:-49581243 | None:intergenic |
| CAATTTCATTTCCAGGTTGA+AGG | 0.411773 | 5_4:+49578479 | Msa0855720:intron |
| TAGCAAAGCACTTCTTCATA+TGG | 0.418506 | 5_4:-49576896 | None:intergenic |
| ATAATTGTTGATGGTGTCTC+AGG | 0.422446 | 5_4:+49581116 | Msa0855720:three_prime_UTR |
| TTTACCTGGCCACCAGTGTC+TGG | 0.422921 | 5_4:-49578693 | None:intergenic |
| GATCTGGCTTCCCTTCCATT+AGG | 0.423211 | 5_4:-49579589 | None:intergenic |
| CAATGTGGATTGTGAACGTC+TGG | 0.431421 | 5_4:-49582272 | None:intergenic |
| TAATTTCCAATAACAAGATC+TGG | 0.431825 | 5_4:-49579605 | None:intergenic |
| ACGTAGAATGTGAGAGTGTT+TGG | 0.432164 | 5_4:-49579250 | None:intergenic |
| TGTTATCTACTTTGTTAAAG+AGG | 0.432624 | 5_4:-49580246 | None:intergenic |
| AATGCATTTGAAGCAGACTT+TGG | 0.434330 | 5_4:+49577860 | Msa0855720:CDS |
| GAAATCACGTTCCAATATGA+TGG | 0.435511 | 5_4:-49581215 | None:intergenic |
| AGAGTTGGTTGCTTGTCAAC+TGG | 0.437105 | 5_4:-49581716 | None:intergenic |
| CTACTCTGCTTCAATGCATC+AGG | 0.439087 | 5_4:-49576870 | None:intergenic |
| AAATTTGGTGGCATCACTAA+TGG | 0.439094 | 5_4:+49579637 | Msa0855720:CDS |
| AGATAATGCAGGAAGGGTGA+AGG | 0.439483 | 5_4:+49578527 | Msa0855720:CDS |
| ACTTAAGCGGGTTAGTTGAA+TGG | 0.440702 | 5_4:+49580766 | Msa0855720:three_prime_UTR |
| GCCTATGTAGAGTTGTTTCT+GGG | 0.445424 | 5_4:+49580104 | Msa0855720:CDS |
| CGATGCATTGCTGACTCAAA+GGG | 0.446727 | 5_4:+49580987 | Msa0855720:three_prime_UTR |
| ATTCCTTTCTCTGTATGAAA+AGG | 0.447223 | 5_4:-49579276 | None:intergenic |
| CCATCAACAATTATTTCTGC+TGG | 0.448191 | 5_4:-49581107 | None:intergenic |
| AGACTCACCACAAGAATTTG+AGG | 0.449816 | 5_4:-49579082 | None:intergenic |
| CCTCTTCCAATGCCTTGACT+TGG | 0.450605 | 5_4:-49579018 | None:intergenic |
| CATTTCCAGGTTGAAGGAGT+GGG | 0.459088 | 5_4:+49578485 | Msa0855720:intron |
| CTTGCCAGACACTGGTGGCC+AGG | 0.463571 | 5_4:+49578689 | Msa0855720:CDS |
| TTTGTTAACTTGCTTCCAAA+AGG | 0.466022 | 5_4:-49581479 | None:intergenic |
| GTGAACCTTGTCATAGTTGG+TGG | 0.468895 | 5_4:+49580819 | Msa0855720:three_prime_UTR |
| CACTTAGTTCCTCTAGCATC+AGG | 0.468958 | 5_4:-49579198 | None:intergenic |
| TACTCCCAGACTCCTGGATT+AGG | 0.474616 | 5_4:-49577292 | None:intergenic |
| CATTGATTGGTTCAAACTCC+TGG | 0.474899 | 5_4:-49579224 | None:intergenic |
| GGTTCACAGGATCCGGAGCT+TGG | 0.476030 | 5_4:-49578578 | None:intergenic |
| CACAGATTACCTCAAATTCA+AGG | 0.476544 | 5_4:+49577360 | Msa0855720:CDS |
| GAGTGTTTGGTATCATTGAT+TGG | 0.478819 | 5_4:-49579237 | None:intergenic |
| CGTACATACTCCCAGACTCC+TGG | 0.479613 | 5_4:-49577298 | None:intergenic |
| CTTGAATTTGAGGTAATCTG+TGG | 0.479667 | 5_4:-49577359 | None:intergenic |
| GAAAGGAATCTTGCGCCAAT+GGG | 0.483913 | 5_4:+49579290 | Msa0855720:CDS |
| AAGAGGAGATCTTCAATAGC+AGG | 0.484163 | 5_4:-49580229 | None:intergenic |
| AGAAAGGAATCTTGCGCCAA+TGG | 0.485834 | 5_4:+49579289 | Msa0855720:CDS |
| AGTACATACCAAGAAATTGC+TGG | 0.486522 | 5_4:+49579920 | Msa0855720:CDS |
| AAAGGATGGGGAGATAATGC+AGG | 0.486672 | 5_4:+49578516 | Msa0855720:CDS |
| CCAGCAGAAATAATTGTTGA+TGG | 0.490757 | 5_4:+49581107 | Msa0855720:three_prime_UTR |
| ATGAAGACTCAGATGTTAAG+TGG | 0.491444 | 5_4:+49579813 | Msa0855720:CDS |
| GTTCACAATCCACATTGAAA+AGG | 0.494536 | 5_4:+49582278 | Msa0855720:three_prime_UTR |
| AGCTCCGGATCCTGTGAACC+TGG | 0.494693 | 5_4:+49578581 | Msa0855720:CDS |
| CTAATTGCAAAGGCTACATA+TGG | 0.497187 | 5_4:-49577268 | None:intergenic |
| AGGTGAAGCTATATTGAACT+TGG | 0.506881 | 5_4:-49580143 | None:intergenic |
| GAGCCTTGTTGTTTGAGAGT+TGG | 0.508078 | 5_4:-49581731 | None:intergenic |
| GCATGGCTTTCATACTGTCC+AGG | 0.512596 | 5_4:-49580064 | None:intergenic |
| TTGAATTTGAGGTAATCTGT+GGG | 0.512878 | 5_4:-49577358 | None:intergenic |
| CTTGATTCATCTCCATTGAG+AGG | 0.513096 | 5_4:-49581152 | None:intergenic |
| AGCGGGTTAGTTGAATGGTA+TGG | 0.513516 | 5_4:+49580771 | Msa0855720:three_prime_UTR |
| CCAAGTCAAGGCATTGGAAG+AGG | 0.514877 | 5_4:+49579018 | Msa0855720:CDS |
| ATTTCCAGGTTGAAGGAGTG+GGG | 0.515424 | 5_4:+49578486 | Msa0855720:intron |
| TTACCTCAAATTCAAGGAAA+GGG | 0.515471 | 5_4:+49577366 | Msa0855720:CDS |
| GTTCTTGGCTTGCCAGACAC+TGG | 0.515609 | 5_4:+49578681 | Msa0855720:CDS |
| TGTACTGGTTATGATGAAAT+CGG | 0.521627 | 5_4:-49579903 | None:intergenic |
| ATCAGAAGTACTCCAAGCTC+CGG | 0.522664 | 5_4:+49578566 | Msa0855720:CDS |
| GTTATTGGAAATTACACGGA+TGG | 0.522848 | 5_4:+49579614 | Msa0855720:CDS |
| TTCCACATTGATCCTCTCAA+TGG | 0.523550 | 5_4:+49581140 | Msa0855720:three_prime_UTR |
| GGCAAAAGCACAGACTATAG+TGG | 0.530206 | 5_4:+49577985 | Msa0855720:CDS |
| CCTTGATTAGTAGCAAAAGT+TGG | 0.536164 | 5_4:-49581080 | None:intergenic |
| ATTACCTCAAATTCAAGGAA+AGG | 0.536681 | 5_4:+49577365 | Msa0855720:CDS |
| TTGGTGAACCTTGTCATAGT+TGG | 0.540805 | 5_4:+49580816 | Msa0855720:three_prime_UTR |
| CTCGGCTGCAAAGCTTCAGA+TGG | 0.543389 | 5_4:+49578171 | Msa0855720:CDS |
| TCGATGCATTGCTGACTCAA+AGG | 0.544831 | 5_4:+49580986 | Msa0855720:three_prime_UTR |
| GAAACAACTCTACATAGGCC+TGG | 0.545252 | 5_4:-49580100 | None:intergenic |
| CTCTCAAACAACAAGGCTCT+AGG | 0.545501 | 5_4:+49581735 | Msa0855720:three_prime_UTR |
| GAAGATATATGCAAACAAGT+TGG | 0.545929 | 5_4:+49581435 | Msa0855720:three_prime_UTR |
| TTATAAACCAATATATAAGA+AGG | 0.546347 | 5_4:-49582484 | None:intergenic |
| ATGTTGTGAAGAACTTAAGC+GGG | 0.548780 | 5_4:+49580754 | Msa0855720:exon |
| GTGCGCTTCAAGGTATGTGT+TGG | 0.550745 | 5_4:-49576825 | None:intergenic |
| TCATGAATTAATGGAAGAAG+TGG | 0.551105 | 5_4:+49576953 | Msa0855720:CDS |
| CTTAACATTGACAGGTAACA+AGG | 0.552130 | 5_4:+49579169 | Msa0855720:intron |
| TTCAAAATCAAAAGATAGAG+AGG | 0.553369 | 5_4:+49580854 | Msa0855720:three_prime_UTR |
| CTTGGCTTGCCAGACACTGG+TGG | 0.554446 | 5_4:+49578684 | Msa0855720:CDS |
| TAGGCCTAATCCAGGAGTCT+GGG | 0.556349 | 5_4:+49577288 | Msa0855720:CDS |
| TTTCCAGGTTGAAGGAGTGG+GGG | 0.558404 | 5_4:+49578487 | Msa0855720:intron |
| TATAAACTCAGAAATAATGA+TGG | 0.559092 | 5_4:-49576751 | None:intergenic |
| TTGTTGAAACTAAATCATCA+TGG | 0.559548 | 5_4:+49578013 | Msa0855720:CDS |
| AACTAAAGGGACAATTCAGA+TGG | 0.563580 | 5_4:+49580922 | Msa0855720:three_prime_UTR |
| ATTGGACCAAGTCAAGGCAT+TGG | 0.563812 | 5_4:+49579012 | Msa0855720:CDS |
| TCATTTCCAGGTTGAAGGAG+TGG | 0.564746 | 5_4:+49578484 | Msa0855720:intron |
| TTTGCAATTAGGCCTAATCC+AGG | 0.566483 | 5_4:+49577280 | Msa0855720:CDS |
| CAATAATCTTCTCGATGGCA+AGG | 0.566855 | 5_4:+49580727 | Msa0855720:CDS |
| CACTAATGGCTAGAAAACTT+GGG | 0.568038 | 5_4:+49579651 | Msa0855720:CDS |
| GATAAATGACACGTTGAGCT+CGG | 0.568356 | 5_4:+49578153 | Msa0855720:CDS |
| ATTGCAAAGGCTACATATGG+TGG | 0.571806 | 5_4:-49577265 | None:intergenic |
| CCAAATGCTTCATACAAAGC+AGG | 0.573499 | 5_4:-49581023 | None:intergenic |
| GATTGCAGCGCATAAATGAA+TGG | 0.573820 | 5_4:+49581246 | Msa0855720:three_prime_UTR |
| CTTTATATTGAGCTCTACAC+AGG | 0.580216 | 5_4:+49577031 | Msa0855720:CDS |
| GTGGATATCTAGCAGAGAAG+AGG | 0.585549 | 5_4:+49580700 | Msa0855720:intron |
| TCTTAACTTCAAGGACAACT+GGG | 0.587344 | 5_4:+49577957 | Msa0855720:CDS |
| TGGAACGTGATTTCTGCGGC+CGG | 0.591424 | 5_4:+49581224 | Msa0855720:three_prime_UTR |
| ATGGGGAGATAATGCAGGAA+GGG | 0.592050 | 5_4:+49578521 | Msa0855720:CDS |
| AAATCACGTTCCAATATGAT+GGG | 0.592482 | 5_4:-49581214 | None:intergenic |
| GAAACCAATAATCTTCTCGA+TGG | 0.592864 | 5_4:+49580722 | Msa0855720:CDS |
| TTACACGGATGGAAATTTGG+TGG | 0.593594 | 5_4:+49579625 | Msa0855720:CDS |
| GAACAAGAGACTAAGAAACT+TGG | 0.594567 | 5_4:+49580797 | Msa0855720:three_prime_UTR |
| GGAGTATGTACGTGTCAACT+CGG | 0.597670 | 5_4:+49577309 | Msa0855720:CDS |
| TCTTGTTATTGGAAATTACA+CGG | 0.599171 | 5_4:+49579610 | Msa0855720:CDS |
| TTACATATTGGACCAAGTCA+AGG | 0.599602 | 5_4:+49579006 | Msa0855720:CDS |
| GATGGGGAGATAATGCAGGA+AGG | 0.601426 | 5_4:+49578520 | Msa0855720:CDS |
| TAGAAAACTTGGGATAACTC+AGG | 0.607985 | 5_4:+49579661 | Msa0855720:CDS |
| TAGAGGAACTAAGTGCCACC+AGG | 0.609338 | 5_4:+49579206 | Msa0855720:CDS |
| CAAACAAGTTGGTAAATATG+GGG | 0.611526 | 5_4:+49581446 | Msa0855720:three_prime_UTR |
| TTCTACGAATTAAGCAACAA+GGG | 0.612297 | 5_4:+49579047 | Msa0855720:CDS |
| TGGATTAGGCCTAATTGCAA+AGG | 0.614592 | 5_4:-49577278 | None:intergenic |
| ATTTCCAATTGAAGAAGACA+AGG | 0.616302 | 5_4:-49577912 | None:intergenic |
| CTCGGAGGACCTCTCTGTTG+AGG | 0.619017 | 5_4:+49577327 | Msa0855720:CDS |
| GGTGAAGCTATATTGAACTT+GGG | 0.621197 | 5_4:-49580142 | None:intergenic |
| GATGTTGTGAAGAACTTAAG+CGG | 0.622437 | 5_4:+49580753 | Msa0855720:exon |
| AGTTAACAAAGAGCAAAATG+AGG | 0.623039 | 5_4:+49581492 | Msa0855720:three_prime_UTR |
| ATTCTACGAATTAAGCAACA+AGG | 0.623563 | 5_4:+49579046 | Msa0855720:CDS |
| TGAATAAAATGATGTGTCTG+AGG | 0.626455 | 5_4:+49582571 | Msa0855720:three_prime_UTR |
| CAACCAACTCTCAAACAACA+AGG | 0.628977 | 5_4:+49581728 | Msa0855720:three_prime_UTR |
| AGAGGAGATCTTCAATAGCA+GGG | 0.629949 | 5_4:-49580228 | None:intergenic |
| TCCCAGAAACAACTCTACAT+AGG | 0.630829 | 5_4:-49580105 | None:intergenic |
| AAGTTCAATATAGCTTCACC+TGG | 0.636766 | 5_4:+49580145 | Msa0855720:CDS |
| TAGATACTTTGATCAGCACC+AGG | 0.643107 | 5_4:-49580163 | None:intergenic |
| GAATTTGAGGTAATCTGTGG+GGG | 0.644323 | 5_4:-49577356 | None:intergenic |
| CTGGAAGAGTAAATGCAGCA+TGG | 0.646190 | 5_4:-49580081 | None:intergenic |
| TGATTGGTTCAAACTCCTGG+TGG | 0.652035 | 5_4:-49579221 | None:intergenic |
| CATACCAAGAAATTGCTGGA+AGG | 0.653894 | 5_4:+49579924 | Msa0855720:CDS |
| AAGAAGGTTATACACATCAG+AGG | 0.660670 | 5_4:-49582468 | None:intergenic |
| TGAATTTGAGGTAATCTGTG+GGG | 0.661174 | 5_4:-49577357 | None:intergenic |
| AAGGTTATACACATCAGAGG+AGG | 0.675638 | 5_4:-49582465 | None:intergenic |
| CTCCATTGAGAGGATCAATG+TGG | 0.693616 | 5_4:-49581142 | None:intergenic |
| GTCATTGAAGCAATGAACTG+TGG | 0.697770 | 5_4:+49581053 | Msa0855720:three_prime_UTR |
| CAGACTGATCGATATCGCAA+CGG | 0.702884 | 5_4:+49580954 | Msa0855720:three_prime_UTR |
| ATATTGGAACGTGATTTCTG+CGG | 0.707520 | 5_4:+49581220 | Msa0855720:three_prime_UTR |
| AGAAGCCACCAACTATGACA+AGG | 0.713700 | 5_4:-49580824 | None:intergenic |
| GGGTGATAGCCTCAACAGAG+AGG | 0.723003 | 5_4:-49577336 | None:intergenic |
| AGGTTGATACCTGATGCTAG+AGG | 0.743701 | 5_4:+49579189 | Msa0855720:CDS |
| GTATGTACGTGTCAACTCGG+AGG | 0.747738 | 5_4:+49577312 | Msa0855720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAATTGTTTATTAAAG+AGG | + | chr5_4:49578273-49578292 | Msa0855720:intron | 10.0% |
| !! | AACAAATATTAATAAATGAA+AGG | - | chr5_4:49579963-49579982 | None:intergenic | 10.0% |
| !! | ACAGTAAAAAAAATATTAAA+GGG | - | chr5_4:49581321-49581340 | None:intergenic | 10.0% |
| !! | AACAGTAAAAAAAATATTAA+AGG | - | chr5_4:49581322-49581341 | None:intergenic | 10.0% |
| !!! | AAATGAAAGAAATTATGTTT+TGG | + | chr5_4:49576995-49577014 | Msa0855720:CDS | 15.0% |
| !!! | CTTTTTATATTTTGTCTAAT+AGG | + | chr5_4:49577056-49577075 | Msa0855720:intron | 15.0% |
| !!! | ATATATTTAATTTGAAGTCT+TGG | + | chr5_4:49577430-49577449 | Msa0855720:intron | 15.0% |
| !! | AATATTGAAAGAAAAACTAA+AGG | - | chr5_4:49579705-49579724 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTCAATATTTTTG+TGG | + | chr5_4:49579709-49579728 | Msa0855720:intron | 15.0% |
| !!! | ATTCACTTTTGAAATTATTA+TGG | + | chr5_4:49580672-49580691 | Msa0855720:intron | 15.0% |
| !! | ATAAGAAATTATAGAACATA+TGG | - | chr5_4:49581534-49581553 | None:intergenic | 15.0% |
| !! | TAATTTCTTATTCAAGAATT+TGG | + | chr5_4:49581543-49581562 | Msa0855720:three_prime_UTR | 15.0% |
| !! | CAAATAAGAAAATATTGTTT+CGG | + | chr5_4:49581814-49581833 | Msa0855720:intron | 15.0% |
| !! | TGTTAAATACATATTTAAGT+TGG | + | chr5_4:49582129-49582148 | Msa0855720:intron | 15.0% |
| !! | ACAAAAATAGAAAGAATTTA+CGG | - | chr5_4:49582156-49582175 | None:intergenic | 15.0% |
| !! | TTATAAACCAATATATAAGA+AGG | - | chr5_4:49582487-49582506 | None:intergenic | 15.0% |
| !! | TATAAACTCAGAAATAATGA+TGG | - | chr5_4:49576754-49576773 | None:intergenic | 20.0% |
| !!! | TTTTTTATTACTCAATGTGT+TGG | - | chr5_4:49577151-49577170 | None:intergenic | 20.0% |
| !!! | ATAACATTTTCGATATTGTA+GGG | + | chr5_4:49577826-49577845 | Msa0855720:intron | 20.0% |
| !! | AACATAGCTAAAAACAAATT+TGG | - | chr5_4:49578299-49578318 | None:intergenic | 20.0% |
| !!! | TTTAGCTATGTTTAAAATCT+CGG | + | chr5_4:49578307-49578326 | Msa0855720:intron | 20.0% |
| !! | ATTAAAATTAATGTTCCTCA+TGG | - | chr5_4:49578726-49578745 | None:intergenic | 20.0% |
| !! | ATTATAAGTATCAAGTAGTA+AGG | + | chr5_4:49578744-49578763 | Msa0855720:intron | 20.0% |
| !!! | ATACTTTGGTTGATATTAAT+AGG | + | chr5_4:49579544-49579563 | Msa0855720:intron | 20.0% |
| !!! | AAACTTTTAAAATTTTCGCT+TGG | - | chr5_4:49580610-49580629 | None:intergenic | 20.0% |
| !! | AATTGAAAAACATCAACTAA+AGG | + | chr5_4:49580908-49580927 | Msa0855720:three_prime_UTR | 20.0% |
| !! | ATTGAAAAACATCAACTAAA+GGG | + | chr5_4:49580909-49580928 | Msa0855720:three_prime_UTR | 20.0% |
| !!! | ATTAAAGGGTCTTATAAAAA+TGG | - | chr5_4:49581307-49581326 | None:intergenic | 20.0% |
| !!! | AAAATTAATTTTCTTGCTGA+TGG | - | chr5_4:49581379-49581398 | None:intergenic | 20.0% |
| !!! | ATTTTGTTTTAGAATTTGAG+AGG | + | chr5_4:49581772-49581791 | Msa0855720:intron | 20.0% |
| !! | AGATATGATTTACCATATAA+AGG | - | chr5_4:49581898-49581917 | None:intergenic | 20.0% |
| !!! | CATTTTTCTCTCATTATTAT+CGG | - | chr5_4:49582047-49582066 | None:intergenic | 20.0% |
| !!! | TAAATTTAACCTTTTCAATG+TGG | - | chr5_4:49582290-49582309 | None:intergenic | 20.0% |
| !! | TGTATAACCTTCTTATATAT+TGG | + | chr5_4:49582477-49582496 | Msa0855720:three_prime_UTR | 20.0% |
| ! | CTATCTCTAATTTCTTTCAA+TGG | + | chr5_4:49576800-49576819 | Msa0855720:exon | 25.0% |
| ! | CATGAAACTTCATGAATTAA+TGG | + | chr5_4:49576944-49576963 | Msa0855720:CDS | 25.0% |
| !!! | TGAAAGAAATTATGTTTTGG+AGG | + | chr5_4:49576998-49577017 | Msa0855720:CDS | 25.0% |
| !!! | GAAAGAAATTATGTTTTGGA+GGG | + | chr5_4:49576999-49577018 | Msa0855720:CDS | 25.0% |
| !!! | TTAGCCTTTGAATTTTAATG+TGG | + | chr5_4:49577210-49577229 | Msa0855720:intron | 25.0% |
| ! | TGAATGTCTGTTAGAAAATA+TGG | + | chr5_4:49577486-49577505 | Msa0855720:intron | 25.0% |
| !! | CATAACATTTTCGATATTGT+AGG | + | chr5_4:49577825-49577844 | Msa0855720:intron | 25.0% |
| ! | TTTCAAAGTTCTTAACTTCA+AGG | + | chr5_4:49577948-49577967 | Msa0855720:CDS | 25.0% |
| ! | TTGTTGAAACTAAATCATCA+TGG | + | chr5_4:49578013-49578032 | Msa0855720:CDS | 25.0% |
| ! | AAAGAATATGTAACTGTTGT+TGG | - | chr5_4:49578086-49578105 | None:intergenic | 25.0% |
| !!! | TTTTGATATGAAGTGTCTTT+TGG | - | chr5_4:49578232-49578251 | None:intergenic | 25.0% |
| ! | CATATCAAAAATTTGAGCTA+AGG | + | chr5_4:49578242-49578261 | Msa0855720:CDS | 25.0% |
| ! | GTAATTATATACATCTGATG+TGG | + | chr5_4:49578362-49578381 | Msa0855720:intron | 25.0% |
| ! | AATGTCTGTGATCAAAATTT+AGG | - | chr5_4:49578422-49578441 | None:intergenic | 25.0% |
| !!! | TTTTTTAAAGCTCTACTTGT+TGG | + | chr5_4:49578441-49578460 | Msa0855720:intron | 25.0% |
| !! | ATCACTACTTTGAAAATTGT+TGG | - | chr5_4:49578627-49578646 | None:intergenic | 25.0% |
| ! | GTTAGAAAGGAAAACAAATT+TGG | - | chr5_4:49578960-49578979 | None:intergenic | 25.0% |
| !! | TTTTAAACCTCAAATTCTTG+TGG | + | chr5_4:49579075-49579094 | Msa0855720:CDS | 25.0% |
| ! | TAATTTCCAATAACAAGATC+TGG | - | chr5_4:49579608-49579627 | None:intergenic | 25.0% |
| !!! | TCTTGTTATTGGAAATTACA+CGG | + | chr5_4:49579610-49579629 | Msa0855720:CDS | 25.0% |
| ! | TGTACTTGTGATTGAAAATT+AGG | + | chr5_4:49579757-49579776 | Msa0855720:intron | 25.0% |
| !! | TTTTGTCTTTTTCTGTGTAA+GGG | - | chr5_4:49580192-49580211 | None:intergenic | 25.0% |
| ! | TGTTATCTACTTTGTTAAAG+AGG | - | chr5_4:49580249-49580268 | None:intergenic | 25.0% |
| ! | TGAAATTATTATGGAAACAG+TGG | + | chr5_4:49580681-49580700 | Msa0855720:intron | 25.0% |
| !!! | CTCTATCTTTTGATTTTGAA+GGG | - | chr5_4:49580854-49580873 | None:intergenic | 25.0% |
| !!! | TCTCTATCTTTTGATTTTGA+AGG | - | chr5_4:49580855-49580874 | None:intergenic | 25.0% |
| ! | TTCAAAATCAAAAGATAGAG+AGG | + | chr5_4:49580854-49580873 | Msa0855720:three_prime_UTR | 25.0% |
| ! | AAAACTCACTATGCAATAAT+TGG | - | chr5_4:49581609-49581628 | None:intergenic | 25.0% |
| ! | GAATAATCTCAACCTTTATA+TGG | + | chr5_4:49581883-49581902 | Msa0855720:intron | 25.0% |
| ! | CGAATGTATATAGTCTAATT+TGG | - | chr5_4:49581946-49581965 | None:intergenic | 25.0% |
| ! | AGAGACACATAATTCTTATA+AGG | - | chr5_4:49581982-49582001 | None:intergenic | 25.0% |
| ! | TTATAAGAATTATGTGTCTC+TGG | + | chr5_4:49581981-49582000 | Msa0855720:intron | 25.0% |
| ! | TGTTAGCATGAAAAATCAAA+TGG | - | chr5_4:49582215-49582234 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTCCTTTTCTTCT+TGG | + | chr5_4:49582240-49582259 | Msa0855720:intron | 25.0% |
| !!! | TGCAAGTGTTTTTTTTAGTA+AGG | - | chr5_4:49582357-49582376 | None:intergenic | 25.0% |
| TTTGCTAAGTACCTAGAAAA+AGG | + | chr5_4:49576912-49576931 | Msa0855720:CDS | 30.0% | |
| TTGCTAAGTACCTAGAAAAA+GGG | + | chr5_4:49576913-49576932 | Msa0855720:CDS | 30.0% | |
| TCATGAATTAATGGAAGAAG+TGG | + | chr5_4:49576953-49576972 | Msa0855720:CDS | 30.0% | |
| TGCACCACATTAAAATTCAA+AGG | - | chr5_4:49577217-49577236 | None:intergenic | 30.0% | |
| ! | TTGAATTTGAGGTAATCTGT+GGG | - | chr5_4:49577361-49577380 | None:intergenic | 30.0% |
| ATTACCTCAAATTCAAGGAA+AGG | + | chr5_4:49577365-49577384 | Msa0855720:CDS | 30.0% | |
| TTACCTCAAATTCAAGGAAA+GGG | + | chr5_4:49577366-49577385 | Msa0855720:CDS | 30.0% | |
| ! | GAGAAATGACATACCATTTT+TGG | - | chr5_4:49577399-49577418 | None:intergenic | 30.0% |
| AAGGTACGAAGATCTATATA+AGG | - | chr5_4:49577641-49577660 | None:intergenic | 30.0% | |
| AGCTACTAACTAATCTTTCA+AGG | - | chr5_4:49577660-49577679 | None:intergenic | 30.0% | |
| TATGCATCAAAAGCAAAGTT+AGG | - | chr5_4:49577809-49577828 | None:intergenic | 30.0% | |
| !! | ACTTTGGAGCATTTGATATT+GGG | + | chr5_4:49577876-49577895 | Msa0855720:CDS | 30.0% |
| GAAGAAGACAAGGTTAATTT+AGG | - | chr5_4:49577905-49577924 | None:intergenic | 30.0% | |
| TTAACCTTGTCTTCTTCAAT+TGG | + | chr5_4:49577908-49577927 | Msa0855720:CDS | 30.0% | |
| ATTTCCAATTGAAGAAGACA+AGG | - | chr5_4:49577915-49577934 | None:intergenic | 30.0% | |
| TTGTCTTCTTCAATTGGAAA+TGG | + | chr5_4:49577914-49577933 | Msa0855720:CDS | 30.0% | |
| TACAATTCTTCGCAATATCA+AGG | - | chr5_4:49578345-49578364 | None:intergenic | 30.0% | |
| !!! | ACATAAGATTTTTTATGCCG+CGG | - | chr5_4:49578394-49578413 | None:intergenic | 30.0% |
| TGGAAATGAAATTGGCATTA+GGG | - | chr5_4:49578473-49578492 | None:intergenic | 30.0% | |
| AAAAATATTTCCAGGTTCAC+AGG | - | chr5_4:49578594-49578613 | None:intergenic | 30.0% | |
| TTCTGCTGAAAAATATTTCC+AGG | - | chr5_4:49578602-49578621 | None:intergenic | 30.0% | |
| ! | TTCTCAGTTCATGGTTATTT+TGG | + | chr5_4:49578648-49578667 | Msa0855720:CDS | 30.0% |
| !! | TCTCAGTTCATGGTTATTTT+GGG | + | chr5_4:49578649-49578668 | Msa0855720:CDS | 30.0% |
| !!! | AGTAGTAAGGTTTTAAATCG+CGG | + | chr5_4:49578757-49578776 | Msa0855720:intron | 30.0% |
| CAAGGTTTAAGAAAGATTTG+CGG | - | chr5_4:49578892-49578911 | None:intergenic | 30.0% | |
| ! | TTCAATTTGAAGTAGAGACA+AGG | - | chr5_4:49578910-49578929 | None:intergenic | 30.0% |
| ! | TTTTGCAACAAGTGTTAGAA+AGG | - | chr5_4:49578973-49578992 | None:intergenic | 30.0% |
| ACAACAGGTAGTTTACATAT+TGG | + | chr5_4:49578994-49579013 | Msa0855720:intron | 30.0% | |
| ATTCTACGAATTAAGCAACA+AGG | + | chr5_4:49579046-49579065 | Msa0855720:CDS | 30.0% | |
| TTCTACGAATTAAGCAACAA+GGG | + | chr5_4:49579047-49579066 | Msa0855720:CDS | 30.0% | |
| ! | TCTAAGTTTCAAGTAGAAAG+AGG | - | chr5_4:49579123-49579142 | None:intergenic | 30.0% |
| ATTCCTTTCTCTGTATGAAA+AGG | - | chr5_4:49579279-49579298 | None:intergenic | 30.0% | |
| TACTGTAAGATAAAAGTTCG+CGG | - | chr5_4:49579438-49579457 | None:intergenic | 30.0% | |
| !! | CAAAGAATAGTTCTAAACAG+CGG | - | chr5_4:49579488-49579507 | None:intergenic | 30.0% |
| TTTCCTTCTTACGAATACTT+TGG | + | chr5_4:49579530-49579549 | Msa0855720:intron | 30.0% | |
| ! | AACCAAAATTTTGGACCTAA+TGG | + | chr5_4:49579574-49579593 | Msa0855720:CDS | 30.0% |
| ! | TTCCATTAGGTCCAAAATTT+TGG | - | chr5_4:49579579-49579598 | None:intergenic | 30.0% |
| ! | AAAATTTTGGACCTAATGGA+AGG | + | chr5_4:49579578-49579597 | Msa0855720:CDS | 30.0% |
| ! | AAATTTTGGACCTAATGGAA+GGG | + | chr5_4:49579579-49579598 | Msa0855720:CDS | 30.0% |
| AAATTACACGGATGGAAATT+TGG | + | chr5_4:49579622-49579641 | Msa0855720:CDS | 30.0% | |
| !! | TCAATATTTTTGTGGCTGAA+AGG | + | chr5_4:49579717-49579736 | Msa0855720:intron | 30.0% |
| TGACATGAGAAGTGATATTT+AGG | - | chr5_4:49579851-49579870 | None:intergenic | 30.0% | |
| !! | TGTACTGGTTATGATGAAAT+CGG | - | chr5_4:49579906-49579925 | None:intergenic | 30.0% |
| ! | CTTTTGTCTTTTTCTGTGTA+AGG | - | chr5_4:49580193-49580212 | None:intergenic | 30.0% |
| AAAGGTTTAATGTGCAAATG+TGG | - | chr5_4:49580298-49580317 | None:intergenic | 30.0% | |
| ! | AGATGAGTCTTTTAACAGAA+AGG | - | chr5_4:49580316-49580335 | None:intergenic | 30.0% |
| ! | ATACCGTCTAAAATTTGAGT+TGG | - | chr5_4:49580421-49580440 | None:intergenic | 30.0% |
| AGGACTTATTTGATTCAATG+CGG | - | chr5_4:49580520-49580539 | None:intergenic | 30.0% | |
| ! | CCACTTATAAACACATTTTC+AGG | - | chr5_4:49580540-49580559 | None:intergenic | 30.0% |
| CCTGAAAATGTGTTTATAAG+TGG | + | chr5_4:49580537-49580556 | Msa0855720:intron | 30.0% | |
| GAAAATGTGTTTATAAGTGG+CGG | + | chr5_4:49580540-49580559 | Msa0855720:intron | 30.0% | |
| !! | TTTATAAACCGGTTTTGCAA+GGG | + | chr5_4:49580574-49580593 | Msa0855720:intron | 30.0% |
| ATCAAAAGATAGAGAGGAAA+TGG | + | chr5_4:49580860-49580879 | Msa0855720:three_prime_UTR | 30.0% | |
| AAATCACGTTCCAATATGAT+GGG | - | chr5_4:49581217-49581236 | None:intergenic | 30.0% | |
| ! | CTTTTTCTTGTAGCTATACA+TGG | + | chr5_4:49581413-49581432 | Msa0855720:intron | 30.0% |
| GAAGATATATGCAAACAAGT+TGG | + | chr5_4:49581435-49581454 | Msa0855720:three_prime_UTR | 30.0% | |
| !! | TGCAAACAAGTTGGTAAATA+TGG | + | chr5_4:49581444-49581463 | Msa0855720:three_prime_UTR | 30.0% |
| !! | GCAAACAAGTTGGTAAATAT+GGG | + | chr5_4:49581445-49581464 | Msa0855720:three_prime_UTR | 30.0% |
| !! | CAAACAAGTTGGTAAATATG+GGG | + | chr5_4:49581446-49581465 | Msa0855720:three_prime_UTR | 30.0% |
| !! | TTTGTTAACTTGCTTCCAAA+AGG | - | chr5_4:49581482-49581501 | None:intergenic | 30.0% |
| AGTTAACAAAGAGCAAAATG+AGG | + | chr5_4:49581492-49581511 | Msa0855720:three_prime_UTR | 30.0% | |
| ! | GAATTTGGTTAGTCAATGTT+TGG | + | chr5_4:49581558-49581577 | Msa0855720:intron | 30.0% |
| CATATGTATGAATGTCAAGT+CGG | + | chr5_4:49582083-49582102 | Msa0855720:intron | 30.0% | |
| ! | CAATTTTCTTAACTGCACAA+AGG | - | chr5_4:49582188-49582207 | None:intergenic | 30.0% |
| GGTTATTACTTGGATCTTAA+TGG | + | chr5_4:49582385-49582404 | Msa0855720:intron | 30.0% | |
| TGAATAAAATGATGTGTCTG+AGG | + | chr5_4:49582571-49582590 | Msa0855720:three_prime_UTR | 30.0% | |
| TAAAGAATTTGTGCGCTTCA+AGG | - | chr5_4:49576838-49576857 | None:intergenic | 35.0% | |
| ! | TAGCAAAGCACTTCTTCATA+TGG | - | chr5_4:49576899-49576918 | None:intergenic | 35.0% |
| !!! | TATGTTTTGGAGGGAAATCT+TGG | + | chr5_4:49577008-49577027 | Msa0855720:CDS | 35.0% |
| CTTTATATTGAGCTCTACAC+AGG | + | chr5_4:49577031-49577050 | Msa0855720:CDS | 35.0% | |
| CTAATTGCAAAGGCTACATA+TGG | - | chr5_4:49577271-49577290 | None:intergenic | 35.0% | |
| CATATGTAGCCTTTGCAATT+AGG | + | chr5_4:49577269-49577288 | Msa0855720:CDS | 35.0% | |
| ! | TGAATTTGAGGTAATCTGTG+GGG | - | chr5_4:49577360-49577379 | None:intergenic | 35.0% |
| ! | CTTGAATTTGAGGTAATCTG+TGG | - | chr5_4:49577362-49577381 | None:intergenic | 35.0% |
| CACAGATTACCTCAAATTCA+AGG | + | chr5_4:49577360-49577379 | Msa0855720:CDS | 35.0% | |
| ! | AAAGGGTGTATGACCAAAAA+TGG | + | chr5_4:49577383-49577402 | Msa0855720:intron | 35.0% |
| TAATTCGTCTCTTAAGCATG+TGG | + | chr5_4:49577556-49577575 | Msa0855720:intron | 35.0% | |
| !! | CTTATGAAAGAGTGCTTGTT+AGG | + | chr5_4:49577604-49577623 | Msa0855720:intron | 35.0% |
| AGTTAGTAGCTTTCGAAATG+TGG | + | chr5_4:49577669-49577688 | Msa0855720:intron | 35.0% | |
| GTTAGTAGCTTTCGAAATGT+GGG | + | chr5_4:49577670-49577689 | Msa0855720:intron | 35.0% | |
| ! | GGGATAAAAAGCACATTACT+TGG | + | chr5_4:49577690-49577709 | Msa0855720:intron | 35.0% |
| TACTATCACTAACCTTCATG+TGG | - | chr5_4:49577753-49577772 | None:intergenic | 35.0% | |
| GTTAGGTGAATCTATCTTCT+TGG | - | chr5_4:49577792-49577811 | None:intergenic | 35.0% | |
| ! | AATGCATTTGAAGCAGACTT+TGG | + | chr5_4:49577860-49577879 | Msa0855720:CDS | 35.0% |
| !! | GACTTTGGAGCATTTGATAT+TGG | + | chr5_4:49577875-49577894 | Msa0855720:CDS | 35.0% |
| TTCTTAACTTCAAGGACAAC+TGG | + | chr5_4:49577956-49577975 | Msa0855720:CDS | 35.0% | |
| TCTTAACTTCAAGGACAACT+GGG | + | chr5_4:49577957-49577976 | Msa0855720:CDS | 35.0% | |
| AATCATCATGGAGAAGTAAG+TGG | + | chr5_4:49578025-49578044 | Msa0855720:intron | 35.0% | |
| CTGGAAATGAAATTGGCATT+AGG | - | chr5_4:49578474-49578493 | None:intergenic | 35.0% | |
| CTAATGCCAATTTCATTTCC+AGG | + | chr5_4:49578472-49578491 | Msa0855720:intron | 35.0% | |
| CTTCAACCTGGAAATGAAAT+TGG | - | chr5_4:49578481-49578500 | None:intergenic | 35.0% | |
| ! | CAATTTCATTTCCAGGTTGA+AGG | + | chr5_4:49578479-49578498 | Msa0855720:intron | 35.0% |
| ! | CTCATGGTAGAAATTTTACC+TGG | - | chr5_4:49578710-49578729 | None:intergenic | 35.0% |
| CAGGTAAAATTTCTACCATG+AGG | + | chr5_4:49578708-49578727 | Msa0855720:intron | 35.0% | |
| TCACAATGCAATAGAGATCA+TGG | - | chr5_4:49578791-49578810 | None:intergenic | 35.0% | |
| TGCATTGTGATCCTAAACAT+TGG | + | chr5_4:49578801-49578820 | Msa0855720:intron | 35.0% | |
| ! | CACTTGTTGCAAAAAACAAC+AGG | + | chr5_4:49578979-49578998 | Msa0855720:intron | 35.0% |
| TTACATATTGGACCAAGTCA+AGG | + | chr5_4:49579006-49579025 | Msa0855720:CDS | 35.0% | |
| AGCATACTCTTAACATTGAC+AGG | + | chr5_4:49579161-49579180 | Msa0855720:intron | 35.0% | |
| CTTAACATTGACAGGTAACA+AGG | + | chr5_4:49579169-49579188 | Msa0855720:intron | 35.0% | |
| GAGTGTTTGGTATCATTGAT+TGG | - | chr5_4:49579240-49579259 | None:intergenic | 35.0% | |
| ACATTTACCCTTATCTTGAG+AGG | + | chr5_4:49579325-49579344 | Msa0855720:intron | 35.0% | |
| GAGTAAACCTCTCAAGATAA+GGG | - | chr5_4:49579335-49579354 | None:intergenic | 35.0% | |
| TGAGTAAACCTCTCAAGATA+AGG | - | chr5_4:49579336-49579355 | None:intergenic | 35.0% | |
| TTATCTTGAGAGGTTTACTC+AGG | + | chr5_4:49579335-49579354 | Msa0855720:intron | 35.0% | |
| !!! | TTCACGGTTTTTTACCTTGT+AGG | + | chr5_4:49579371-49579390 | Msa0855720:intron | 35.0% |
| AGAAGGAAAGTTCATAAGAG+TGG | - | chr5_4:49579519-49579538 | None:intergenic | 35.0% | |
| ! | CAACCAAAGTATTCGTAAGA+AGG | - | chr5_4:49579536-49579555 | None:intergenic | 35.0% |
| ! | GGATGCAACAACCAAAATTT+TGG | + | chr5_4:49579565-49579584 | Msa0855720:intron | 35.0% |
| GTTATTGGAAATTACACGGA+TGG | + | chr5_4:49579614-49579633 | Msa0855720:CDS | 35.0% | |
| ! | AAATTTGGTGGCATCACTAA+TGG | + | chr5_4:49579637-49579656 | Msa0855720:CDS | 35.0% |
| TCACTAATGGCTAGAAAACT+TGG | + | chr5_4:49579650-49579669 | Msa0855720:CDS | 35.0% | |
| CACTAATGGCTAGAAAACTT+GGG | + | chr5_4:49579651-49579670 | Msa0855720:CDS | 35.0% | |
| TAGAAAACTTGGGATAACTC+AGG | + | chr5_4:49579661-49579680 | Msa0855720:CDS | 35.0% | |
| ATGAAGACTCAGATGTTAAG+TGG | + | chr5_4:49579813-49579832 | Msa0855720:CDS | 35.0% | |
| TCACTTCTCATGTCAATTCA+TGG | + | chr5_4:49579856-49579875 | Msa0855720:CDS | 35.0% | |
| AGCAATTTCTTGGTATGTAC+TGG | - | chr5_4:49579921-49579940 | None:intergenic | 35.0% | |
| AGTACATACCAAGAAATTGC+TGG | + | chr5_4:49579920-49579939 | Msa0855720:CDS | 35.0% | |
| GGTGAAGCTATATTGAACTT+GGG | - | chr5_4:49580145-49580164 | None:intergenic | 35.0% | |
| AGGTGAAGCTATATTGAACT+TGG | - | chr5_4:49580146-49580165 | None:intergenic | 35.0% | |
| AAGTTCAATATAGCTTCACC+TGG | + | chr5_4:49580145-49580164 | Msa0855720:CDS | 35.0% | |
| AAGACTCATCTGAGAAGATA+AGG | + | chr5_4:49580325-49580344 | Msa0855720:intron | 35.0% | |
| TTACAACTAAAACTGGTACG+AGG | - | chr5_4:49580384-49580403 | None:intergenic | 35.0% | |
| !!! | TCGTACCAGTTTTAGTTGTA+AGG | + | chr5_4:49580383-49580402 | Msa0855720:intron | 35.0% |
| !!! | CGTACCAGTTTTAGTTGTAA+GGG | + | chr5_4:49580384-49580403 | Msa0855720:intron | 35.0% |
| TCAACCCTTACAACTAAAAC+TGG | - | chr5_4:49580391-49580410 | None:intergenic | 35.0% | |
| TTAGTTGTAAGGGTTGAGTT+AGG | + | chr5_4:49580394-49580413 | Msa0855720:intron | 35.0% | |
| ! | GGTCCAACTCAAATTTTAGA+CGG | + | chr5_4:49580415-49580434 | Msa0855720:intron | 35.0% |
| GGACTTATTTGATTCAATGC+GGG | - | chr5_4:49580519-49580538 | None:intergenic | 35.0% | |
| ACAGTCCTCACTTTATAAAC+CGG | + | chr5_4:49580563-49580582 | Msa0855720:intron | 35.0% | |
| ! | CAAAACCGGTTTATAAAGTG+AGG | - | chr5_4:49580571-49580590 | None:intergenic | 35.0% |
| !! | CTTTATAAACCGGTTTTGCA+AGG | + | chr5_4:49580573-49580592 | Msa0855720:intron | 35.0% |
| GAAACCAATAATCTTCTCGA+TGG | + | chr5_4:49580722-49580741 | Msa0855720:CDS | 35.0% | |
| GATGTTGTGAAGAACTTAAG+CGG | + | chr5_4:49580753-49580772 | Msa0855720:exon | 35.0% | |
| ATGTTGTGAAGAACTTAAGC+GGG | + | chr5_4:49580754-49580773 | Msa0855720:exon | 35.0% | |
| GAACAAGAGACTAAGAAACT+TGG | + | chr5_4:49580797-49580816 | Msa0855720:three_prime_UTR | 35.0% | |
| AACTAAAGGGACAATTCAGA+TGG | + | chr5_4:49580922-49580941 | Msa0855720:three_prime_UTR | 35.0% | |
| CCTTGATTAGTAGCAAAAGT+TGG | - | chr5_4:49581083-49581102 | None:intergenic | 35.0% | |
| ! | CCAACTTTTGCTACTAATCA+AGG | + | chr5_4:49581080-49581099 | Msa0855720:three_prime_UTR | 35.0% |
| ! | ACTTTTGCTACTAATCAAGG+AGG | + | chr5_4:49581083-49581102 | Msa0855720:three_prime_UTR | 35.0% |
| !! | CCATCAACAATTATTTCTGC+TGG | - | chr5_4:49581110-49581129 | None:intergenic | 35.0% |
| CCAGCAGAAATAATTGTTGA+TGG | + | chr5_4:49581107-49581126 | Msa0855720:three_prime_UTR | 35.0% | |
| !! | ATAATTGTTGATGGTGTCTC+AGG | + | chr5_4:49581116-49581135 | Msa0855720:three_prime_UTR | 35.0% |
| GAAATCACGTTCCAATATGA+TGG | - | chr5_4:49581218-49581237 | None:intergenic | 35.0% | |
| ATATTGGAACGTGATTTCTG+CGG | + | chr5_4:49581220-49581239 | Msa0855720:three_prime_UTR | 35.0% | |
| ! | GGGTCTTATAAAAATGGACA+AGG | - | chr5_4:49581301-49581320 | None:intergenic | 35.0% |
| TTGTGATACGTTAATGTGAC+AGG | + | chr5_4:49581655-49581674 | Msa0855720:intron | 35.0% | |
| !! | CGGTATAAAGAAAGTGTCAT+AGG | + | chr5_4:49581834-49581853 | Msa0855720:intron | 35.0% |
| ATGATACACAGACTTGACAA+TGG | + | chr5_4:49582014-49582033 | Msa0855720:intron | 35.0% | |
| CGACTTGACATTCATACATA+TGG | - | chr5_4:49582085-49582104 | None:intergenic | 35.0% | |
| GTTCACAATCCACATTGAAA+AGG | + | chr5_4:49582278-49582297 | Msa0855720:three_prime_UTR | 35.0% | |
| AAAAACACTTGCACACTTTC+AGG | + | chr5_4:49582364-49582383 | Msa0855720:intron | 35.0% | |
| !! | CACACTTTCAGGTTATTACT+TGG | + | chr5_4:49582375-49582394 | Msa0855720:intron | 35.0% |
| AAGAAGGTTATACACATCAG+AGG | - | chr5_4:49582471-49582490 | None:intergenic | 35.0% | |
| AGTACCTAGAAAAAGGGAGA+AGG | + | chr5_4:49576919-49576938 | Msa0855720:CDS | 40.0% | |
| ! | TGATCCTTCTCCCTTTTTCT+AGG | - | chr5_4:49576926-49576945 | None:intergenic | 40.0% |
| ! | TACTCAATGTGTTGGACTAG+TGG | - | chr5_4:49577143-49577162 | None:intergenic | 40.0% |
| ATTGCAAAGGCTACATATGG+TGG | - | chr5_4:49577268-49577287 | None:intergenic | 40.0% | |
| ! | TGGATTAGGCCTAATTGCAA+AGG | - | chr5_4:49577281-49577300 | None:intergenic | 40.0% |
| TTTGCAATTAGGCCTAATCC+AGG | + | chr5_4:49577280-49577299 | Msa0855720:CDS | 40.0% | |
| ! | GAATTTGAGGTAATCTGTGG+GGG | - | chr5_4:49577359-49577378 | None:intergenic | 40.0% |
| ACACCCTTTCCTTGAATTTG+AGG | - | chr5_4:49577372-49577391 | None:intergenic | 40.0% | |
| CTAATTGTAGCACACGAAGT+TGG | - | chr5_4:49577532-49577551 | None:intergenic | 40.0% | |
| !! | GAAAGAGTGCTTGTTAGGAT+AGG | + | chr5_4:49577609-49577628 | Msa0855720:intron | 40.0% |
| AGTTGTACCATACCACATGA+AGG | + | chr5_4:49577738-49577757 | Msa0855720:intron | 40.0% | |
| TCACTAACCTTCATGTGGTA+TGG | - | chr5_4:49577748-49577767 | None:intergenic | 40.0% | |
| GGTGAATCTATCTTCTTGGT+AGG | - | chr5_4:49577788-49577807 | None:intergenic | 40.0% | |
| TTCAAGGACAACTGGGAAAT+TGG | + | chr5_4:49577964-49577983 | Msa0855720:CDS | 40.0% | |
| GATAAATGACACGTTGAGCT+CGG | + | chr5_4:49578153-49578172 | Msa0855720:CDS | 40.0% | |
| !!! | TGTCTTTTGGAATTGCTGAG+AGG | - | chr5_4:49578219-49578238 | None:intergenic | 40.0% |
| GTAGTGATCTTCTCAGTTCA+TGG | + | chr5_4:49578639-49578658 | Msa0855720:CDS | 40.0% | |
| AGACTCACCACAAGAATTTG+AGG | - | chr5_4:49579085-49579104 | None:intergenic | 40.0% | |
| ! | CATTGATTGGTTCAAACTCC+TGG | - | chr5_4:49579227-49579246 | None:intergenic | 40.0% |
| !! | ACGTAGAATGTGAGAGTGTT+TGG | - | chr5_4:49579253-49579272 | None:intergenic | 40.0% |
| ! | GTGCCTTTTCATACAGAGAA+AGG | + | chr5_4:49579273-49579292 | Msa0855720:CDS | 40.0% |
| TACCTTGTAGGCTTGTACTA+TGG | + | chr5_4:49579383-49579402 | Msa0855720:intron | 40.0% | |
| AACCATAGTACAAGCCTACA+AGG | - | chr5_4:49579388-49579407 | None:intergenic | 40.0% | |
| TGTGAACGCAATTACAGTTG+TGG | + | chr5_4:49579461-49579480 | Msa0855720:intron | 40.0% | |
| TTACACGGATGGAAATTTGG+TGG | + | chr5_4:49579625-49579644 | Msa0855720:CDS | 40.0% | |
| CATACCAAGAAATTGCTGGA+AGG | + | chr5_4:49579924-49579943 | Msa0855720:CDS | 40.0% | |
| CAAACCTTCCAGCAATTTCT+TGG | - | chr5_4:49579931-49579950 | None:intergenic | 40.0% | |
| ! | TTTTGCAGCAAAGATAGACC+TGG | + | chr5_4:49580046-49580065 | Msa0855720:intron | 40.0% |
| !! | GCCTATGTAGAGTTGTTTCT+GGG | + | chr5_4:49580104-49580123 | Msa0855720:CDS | 40.0% |
| TCCCAGAAACAACTCTACAT+AGG | - | chr5_4:49580108-49580127 | None:intergenic | 40.0% | |
| TAGATACTTTGATCAGCACC+AGG | - | chr5_4:49580166-49580185 | None:intergenic | 40.0% | |
| AGAGGAGATCTTCAATAGCA+GGG | - | chr5_4:49580231-49580250 | None:intergenic | 40.0% | |
| AAGAGGAGATCTTCAATAGC+AGG | - | chr5_4:49580232-49580251 | None:intergenic | 40.0% | |
| TCATCTGAGAAGATAAGGTC+AGG | + | chr5_4:49580330-49580349 | Msa0855720:intron | 40.0% | |
| TAAGATCCAATCAGACCACA+CGG | + | chr5_4:49580452-49580471 | Msa0855720:intron | 40.0% | |
| TAACTCAACCCTTGCAAAAC+CGG | - | chr5_4:49580585-49580604 | None:intergenic | 40.0% | |
| CTTGCCATCGAGAAGATTAT+TGG | - | chr5_4:49580729-49580748 | None:intergenic | 40.0% | |
| CAATAATCTTCTCGATGGCA+AGG | + | chr5_4:49580727-49580746 | Msa0855720:CDS | 40.0% | |
| !! | ACTTAAGCGGGTTAGTTGAA+TGG | + | chr5_4:49580766-49580785 | Msa0855720:three_prime_UTR | 40.0% |
| TTGGTGAACCTTGTCATAGT+TGG | + | chr5_4:49580816-49580835 | Msa0855720:three_prime_UTR | 40.0% | |
| CCAAATGCTTCATACAAAGC+AGG | - | chr5_4:49581026-49581045 | None:intergenic | 40.0% | |
| ! | CCTGCTTTGTATGAAGCATT+TGG | + | chr5_4:49581023-49581042 | Msa0855720:three_prime_UTR | 40.0% |
| GTCATTGAAGCAATGAACTG+TGG | + | chr5_4:49581053-49581072 | Msa0855720:three_prime_UTR | 40.0% | |
| TTCCACATTGATCCTCTCAA+TGG | + | chr5_4:49581140-49581159 | Msa0855720:three_prime_UTR | 40.0% | |
| CTTGATTCATCTCCATTGAG+AGG | - | chr5_4:49581155-49581174 | None:intergenic | 40.0% | |
| GCAAAGTAGACCCATCATAT+TGG | + | chr5_4:49581204-49581223 | Msa0855720:three_prime_UTR | 40.0% | |
| TTCATTTATGCGCTGCAATC+CGG | - | chr5_4:49581246-49581265 | None:intergenic | 40.0% | |
| GATTGCAGCGCATAAATGAA+TGG | + | chr5_4:49581246-49581265 | Msa0855720:three_prime_UTR | 40.0% | |
| ACAAGGAAACATCTCAAGAG+GGG | - | chr5_4:49581284-49581303 | None:intergenic | 40.0% | |
| GACAAGGAAACATCTCAAGA+GGG | - | chr5_4:49581285-49581304 | None:intergenic | 40.0% | |
| ! | TGCTGATGGTGCACATAAAA+GGG | - | chr5_4:49581365-49581384 | None:intergenic | 40.0% |
| ! | TTGCTGATGGTGCACATAAA+AGG | - | chr5_4:49581366-49581385 | None:intergenic | 40.0% |
| TGCTGCAAACCAAGAAGAAA+AGG | - | chr5_4:49582252-49582271 | None:intergenic | 40.0% | |
| AAGGTTATACACATCAGAGG+AGG | - | chr5_4:49582468-49582487 | None:intergenic | 40.0% | |
| CTACTCTGCTTCAATGCATC+AGG | - | chr5_4:49576873-49576892 | None:intergenic | 45.0% | |
| !! | AATGTGTTGGACTAGTGGTG+GGG | - | chr5_4:49577138-49577157 | None:intergenic | 45.0% |
| !! | CAATGTGTTGGACTAGTGGT+GGG | - | chr5_4:49577139-49577158 | None:intergenic | 45.0% |
| !! | TCAATGTGTTGGACTAGTGG+TGG | - | chr5_4:49577140-49577159 | None:intergenic | 45.0% |
| TGTGGTGCATATGAACTTGC+AGG | + | chr5_4:49577228-49577247 | Msa0855720:intron | 45.0% | |
| GGAGTATGTACGTGTCAACT+CGG | + | chr5_4:49577309-49577328 | Msa0855720:CDS | 45.0% | |
| ! | GGCAAAAGCACAGACTATAG+TGG | + | chr5_4:49577985-49578004 | Msa0855720:CDS | 45.0% |
| TCATGAGACTCTGCAAGTGT+AGG | - | chr5_4:49578135-49578154 | None:intergenic | 45.0% | |
| !!! | GATTTTTTATGCCGCGGTTG+AGG | - | chr5_4:49578388-49578407 | None:intergenic | 45.0% |
| ! | TCATTTCCAGGTTGAAGGAG+TGG | + | chr5_4:49578484-49578503 | Msa0855720:intron | 45.0% |
| ! | CATTTCCAGGTTGAAGGAGT+GGG | + | chr5_4:49578485-49578504 | Msa0855720:intron | 45.0% |
| ! | ATTTCCAGGTTGAAGGAGTG+GGG | + | chr5_4:49578486-49578505 | Msa0855720:intron | 45.0% |
| AAAGGATGGGGAGATAATGC+AGG | + | chr5_4:49578516-49578535 | Msa0855720:CDS | 45.0% | |
| ATGGGGAGATAATGCAGGAA+GGG | + | chr5_4:49578521-49578540 | Msa0855720:CDS | 45.0% | |
| AGATAATGCAGGAAGGGTGA+AGG | + | chr5_4:49578527-49578546 | Msa0855720:CDS | 45.0% | |
| !! | ATCAGAAGTACTCCAAGCTC+CGG | + | chr5_4:49578566-49578585 | Msa0855720:CDS | 45.0% |
| ATTTCCAGGTTCACAGGATC+CGG | - | chr5_4:49578588-49578607 | None:intergenic | 45.0% | |
| TTTGGGCAAGCAGATGTTCT+TGG | + | chr5_4:49578666-49578685 | Msa0855720:CDS | 45.0% | |
| ! | CCTAAACATTGGAGAGCATG+CGG | + | chr5_4:49578812-49578831 | Msa0855720:intron | 45.0% |
| ATTGGACCAAGTCAAGGCAT+TGG | + | chr5_4:49579012-49579031 | Msa0855720:CDS | 45.0% | |
| !! | AGGTTGATACCTGATGCTAG+AGG | + | chr5_4:49579189-49579208 | Msa0855720:CDS | 45.0% |
| CACTTAGTTCCTCTAGCATC+AGG | - | chr5_4:49579201-49579220 | None:intergenic | 45.0% | |
| ! | TGATTGGTTCAAACTCCTGG+TGG | - | chr5_4:49579224-49579243 | None:intergenic | 45.0% |
| AGAAAGGAATCTTGCGCCAA+TGG | + | chr5_4:49579289-49579308 | Msa0855720:CDS | 45.0% | |
| GAAAGGAATCTTGCGCCAAT+GGG | + | chr5_4:49579290-49579309 | Msa0855720:CDS | 45.0% | |
| AGGCATGTATACACGCTTCA+CGG | + | chr5_4:49579355-49579374 | Msa0855720:intron | 45.0% | |
| ! | GGGAAGCCAGATCTTGTTAT+TGG | + | chr5_4:49579599-49579618 | Msa0855720:CDS | 45.0% |
| CTGGAAGAGTAAATGCAGCA+TGG | - | chr5_4:49580084-49580103 | None:intergenic | 45.0% | |
| CATGCTGCATTTACTCTTCC+AGG | + | chr5_4:49580082-49580101 | Msa0855720:CDS | 45.0% | |
| GAAACAACTCTACATAGGCC+TGG | - | chr5_4:49580103-49580122 | None:intergenic | 45.0% | |
| ! | GGCCTATGTAGAGTTGTTTC+TGG | + | chr5_4:49580103-49580122 | Msa0855720:CDS | 45.0% |
| AAGATCCAATCAGACCACAC+GGG | + | chr5_4:49580453-49580472 | Msa0855720:intron | 45.0% | |
| ! | AGATGTCTAGTCTTCGCATG+AGG | + | chr5_4:49580484-49580503 | Msa0855720:intron | 45.0% |
| ! | GATGTCTAGTCTTCGCATGA+GGG | + | chr5_4:49580485-49580504 | Msa0855720:intron | 45.0% |
| ! | GGTTTTGCAAGGGTTGAGTT+AGG | + | chr5_4:49580584-49580603 | Msa0855720:intron | 45.0% |
| GTGGATATCTAGCAGAGAAG+AGG | + | chr5_4:49580700-49580719 | Msa0855720:intron | 45.0% | |
| !! | AGCGGGTTAGTTGAATGGTA+TGG | + | chr5_4:49580771-49580790 | Msa0855720:three_prime_UTR | 45.0% |
| GTGAACCTTGTCATAGTTGG+TGG | + | chr5_4:49580819-49580838 | Msa0855720:three_prime_UTR | 45.0% | |
| AGAAGCCACCAACTATGACA+AGG | - | chr5_4:49580827-49580846 | None:intergenic | 45.0% | |
| CAGACTGATCGATATCGCAA+CGG | + | chr5_4:49580954-49580973 | Msa0855720:three_prime_UTR | 45.0% | |
| !! | TCGATGCATTGCTGACTCAA+AGG | + | chr5_4:49580986-49581005 | Msa0855720:three_prime_UTR | 45.0% |
| !! | CGATGCATTGCTGACTCAAA+GGG | + | chr5_4:49580987-49581006 | Msa0855720:three_prime_UTR | 45.0% |
| CTCCATTGAGAGGATCAATG+TGG | - | chr5_4:49581145-49581164 | None:intergenic | 45.0% | |
| AACATCTCAAGAGGGGACAT+AGG | - | chr5_4:49581277-49581296 | None:intergenic | 45.0% | |
| GGACAAGGAAACATCTCAAG+AGG | - | chr5_4:49581286-49581305 | None:intergenic | 45.0% | |
| ! | TGGGGAACACTTACACCTTT+TGG | + | chr5_4:49581464-49581483 | Msa0855720:three_prime_UTR | 45.0% |
| GGAGGTTCATCACTTGGAAT+AGG | - | chr5_4:49581692-49581711 | None:intergenic | 45.0% | |
| !!! | GGTTTTGGAGGTTCATCACT+TGG | - | chr5_4:49581698-49581717 | None:intergenic | 45.0% |
| !!! | TGCTTGTCAACTGGTTTTGG+AGG | - | chr5_4:49581710-49581729 | None:intergenic | 45.0% |
| !! | GGTTGCTTGTCAACTGGTTT+TGG | - | chr5_4:49581713-49581732 | None:intergenic | 45.0% |
| ! | AGAGTTGGTTGCTTGTCAAC+TGG | - | chr5_4:49581719-49581738 | None:intergenic | 45.0% |
| TGTCAAACACTGACACGTGT+CGG | + | chr5_4:49582106-49582125 | Msa0855720:intron | 45.0% | |
| ! | CAATGTGGATTGTGAACGTC+TGG | - | chr5_4:49582275-49582294 | None:intergenic | 45.0% |
| !! | TAAATTTATTTATATAATCT+TGG | + | chr5_4:49582302-49582321 | Msa0855720:intron | 5.0% |
| GTGCGCTTCAAGGTATGTGT+TGG | - | chr5_4:49576828-49576847 | None:intergenic | 50.0% | |
| TTAGGCCTAATCCAGGAGTC+TGG | + | chr5_4:49577287-49577306 | Msa0855720:CDS | 50.0% | |
| TAGGCCTAATCCAGGAGTCT+GGG | + | chr5_4:49577288-49577307 | Msa0855720:CDS | 50.0% | |
| TACTCCCAGACTCCTGGATT+AGG | - | chr5_4:49577295-49577314 | None:intergenic | 50.0% | |
| GTATGTACGTGTCAACTCGG+AGG | + | chr5_4:49577312-49577331 | Msa0855720:CDS | 50.0% | |
| ! | TTTCCAGGTTGAAGGAGTGG+GGG | + | chr5_4:49578487-49578506 | Msa0855720:intron | 50.0% |
| AAGGAGTGGGGGTTTGAGAA+AGG | + | chr5_4:49578498-49578517 | Msa0855720:CDS | 50.0% | |
| AGTGGGGGTTTGAGAAAGGA+TGG | + | chr5_4:49578502-49578521 | Msa0855720:CDS | 50.0% | |
| GTGGGGGTTTGAGAAAGGAT+GGG | + | chr5_4:49578503-49578522 | Msa0855720:CDS | 50.0% | |
| TGGGGGTTTGAGAAAGGATG+GGG | + | chr5_4:49578504-49578523 | Msa0855720:CDS | 50.0% | |
| GATGGGGAGATAATGCAGGA+AGG | + | chr5_4:49578520-49578539 | Msa0855720:CDS | 50.0% | |
| CCGCATGCTCTCCAATGTTT+AGG | - | chr5_4:49578815-49578834 | None:intergenic | 50.0% | |
| TGTCTCTGCGACTGCAACTA+AGG | - | chr5_4:49578848-49578867 | None:intergenic | 50.0% | |
| CCTCTTCCAATGCCTTGACT+TGG | - | chr5_4:49579021-49579040 | None:intergenic | 50.0% | |
| !! | CCAAGTCAAGGCATTGGAAG+AGG | + | chr5_4:49579018-49579037 | Msa0855720:CDS | 50.0% |
| TAGAGGAACTAAGTGCCACC+AGG | + | chr5_4:49579206-49579225 | Msa0855720:CDS | 50.0% | |
| TGTCGAAGCGAGAAACCCAT+TGG | - | chr5_4:49579308-49579327 | None:intergenic | 50.0% | |
| ! | GATCTGGCTTCCCTTCCATT+AGG | - | chr5_4:49579592-49579611 | None:intergenic | 50.0% |
| GCATGGCTTTCATACTGTCC+AGG | - | chr5_4:49580067-49580086 | None:intergenic | 50.0% | |
| ACATCTGTATGTGACCCGTG+TGG | - | chr5_4:49580470-49580489 | None:intergenic | 50.0% | |
| !! | TTGGACTAGTGGTGGGGCAA+GGG | - | chr5_4:49577132-49577151 | None:intergenic | 55.0% |
| CGTACATACTCCCAGACTCC+TGG | - | chr5_4:49577301-49577320 | None:intergenic | 55.0% | |
| GGGTGATAGCCTCAACAGAG+AGG | - | chr5_4:49577339-49577358 | None:intergenic | 55.0% | |
| CTCGGCTGCAAAGCTTCAGA+TGG | + | chr5_4:49578171-49578190 | Msa0855720:CDS | 55.0% | |
| ATCTGATGTGGCCTCAACCG+CGG | + | chr5_4:49578374-49578393 | Msa0855720:intron | 55.0% | |
| AAACCCCCACTCCTTCAACC+TGG | - | chr5_4:49578493-49578512 | None:intergenic | 55.0% | |
| !! | GTTCTTGGCTTGCCAGACAC+TGG | + | chr5_4:49578681-49578700 | Msa0855720:CDS | 55.0% |
| TTTACCTGGCCACCAGTGTC+TGG | - | chr5_4:49578696-49578715 | None:intergenic | 55.0% | |
| ! | GGAGAGCATGCGGTGTAATG+CGG | + | chr5_4:49578822-49578841 | Msa0855720:intron | 55.0% |
| GATTTGCGGCTGCGACATGT+TGG | - | chr5_4:49578878-49578897 | None:intergenic | 55.0% | |
| TGTGACCCGTGTGGTCTGAT+TGG | - | chr5_4:49580461-49580480 | None:intergenic | 55.0% | |
| TGGAACGTGATTTCTGCGGC+CGG | + | chr5_4:49581224-49581243 | Msa0855720:three_prime_UTR | 55.0% | |
| !! | TGGACTAGTGGTGGGGCAAG+GGG | - | chr5_4:49577131-49577150 | None:intergenic | 60.0% |
| !! | GTTGGACTAGTGGTGGGGCA+AGG | - | chr5_4:49577133-49577152 | None:intergenic | 60.0% |
| CTCGGAGGACCTCTCTGTTG+AGG | + | chr5_4:49577327-49577346 | Msa0855720:CDS | 60.0% | |
| GGTTCACAGGATCCGGAGCT+TGG | - | chr5_4:49578581-49578600 | None:intergenic | 60.0% | |
| AGCTCCGGATCCTGTGAACC+TGG | + | chr5_4:49578581-49578600 | Msa0855720:CDS | 60.0% | |
| !! | CTTGGCTTGCCAGACACTGG+TGG | + | chr5_4:49578684-49578703 | Msa0855720:CDS | 60.0% |
| ! | GTCTTCGCATGAGGGTGTGC+AGG | + | chr5_4:49580493-49580512 | Msa0855720:intron | 60.0% |
| CTTGCCAGACACTGGTGGCC+AGG | + | chr5_4:49578689-49578708 | Msa0855720:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 49576741 | 49582596 | 49576741 | ID=Msa0855720;Name=Msa0855720 |
| chr5_4 | mRNA | 49576741 | 49582596 | 49576741 | ID=Msa0855720-mRNA-1;Parent=Msa0855720;Name=Msa0855720-mRNA-1;_AED=0.10;_eAED=0.10;_QI=78|0.78|0.8|1|0.78|0.73|15|973|556 |
| chr5_4 | exon | 49576741 | 49577052 | 49576741 | ID=Msa0855720-mRNA-1:exon:15545;Parent=Msa0855720-mRNA-1 |
| chr5_4 | exon | 49577250 | 49577389 | 49577250 | ID=Msa0855720-mRNA-1:exon:15546;Parent=Msa0855720-mRNA-1 |
| chr5_4 | exon | 49577847 | 49578039 | 49577847 | ID=Msa0855720-mRNA-1:exon:15547;Parent=Msa0855720-mRNA-1 |
| chr5_4 | exon | 49578145 | 49578263 | 49578145 | ID=Msa0855720-mRNA-1:exon:15548;Parent=Msa0855720-mRNA-1 |
| chr5_4 | exon | 49578494 | 49578710 | 49578494 | ID=Msa0855720-mRNA-1:exon:15549;Parent=Msa0855720-mRNA-1 |
| chr5_4 | exon | 49579001 | 49579096 | 49579001 | ID=Msa0855720-mRNA-1:exon:15550;Parent=Msa0855720-mRNA-1 |
| chr5_4 | exon | 49579183 | 49579311 | 49579183 | ID=Msa0855720-mRNA-1:exon:15551;Parent=Msa0855720-mRNA-1 |
| chr5_4 | exon | 49579566 | 49579682 | 49579566 | ID=Msa0855720-mRNA-1:exon:15552;Parent=Msa0855720-mRNA-1 |
| chr5_4 | exon | 49579779 | 49579945 | 49579779 | ID=Msa0855720-mRNA-1:exon:15553;Parent=Msa0855720-mRNA-1 |
| chr5_4 | exon | 49580054 | 49580258 | 49580054 | ID=Msa0855720-mRNA-1:exon:15554;Parent=Msa0855720-mRNA-1 |
| chr5_4 | exon | 49580701 | 49581267 | 49580701 | ID=Msa0855720-mRNA-1:exon:15555;Parent=Msa0855720-mRNA-1 |
| chr5_4 | exon | 49581426 | 49581564 | 49581426 | ID=Msa0855720-mRNA-1:exon:15556;Parent=Msa0855720-mRNA-1 |
| chr5_4 | exon | 49581677 | 49581756 | 49581677 | ID=Msa0855720-mRNA-1:exon:15557;Parent=Msa0855720-mRNA-1 |
| chr5_4 | exon | 49582270 | 49582299 | 49582270 | ID=Msa0855720-mRNA-1:exon:15558;Parent=Msa0855720-mRNA-1 |
| chr5_4 | exon | 49582386 | 49582596 | 49582386 | ID=Msa0855720-mRNA-1:exon:15559;Parent=Msa0855720-mRNA-1 |
| chr5_4 | five_prime_UTR | 49576741 | 49576818 | 49576741 | ID=Msa0855720-mRNA-1:five_prime_utr;Parent=Msa0855720-mRNA-1 |
| chr5_4 | CDS | 49576819 | 49577052 | 49576819 | ID=Msa0855720-mRNA-1:cds;Parent=Msa0855720-mRNA-1 |
| chr5_4 | CDS | 49577250 | 49577389 | 49577250 | ID=Msa0855720-mRNA-1:cds;Parent=Msa0855720-mRNA-1 |
| chr5_4 | CDS | 49577847 | 49578039 | 49577847 | ID=Msa0855720-mRNA-1:cds;Parent=Msa0855720-mRNA-1 |
| chr5_4 | CDS | 49578145 | 49578263 | 49578145 | ID=Msa0855720-mRNA-1:cds;Parent=Msa0855720-mRNA-1 |
| chr5_4 | CDS | 49578494 | 49578710 | 49578494 | ID=Msa0855720-mRNA-1:cds;Parent=Msa0855720-mRNA-1 |
| chr5_4 | CDS | 49579001 | 49579096 | 49579001 | ID=Msa0855720-mRNA-1:cds;Parent=Msa0855720-mRNA-1 |
| chr5_4 | CDS | 49579183 | 49579311 | 49579183 | ID=Msa0855720-mRNA-1:cds;Parent=Msa0855720-mRNA-1 |
| chr5_4 | CDS | 49579566 | 49579682 | 49579566 | ID=Msa0855720-mRNA-1:cds;Parent=Msa0855720-mRNA-1 |
| chr5_4 | CDS | 49579779 | 49579945 | 49579779 | ID=Msa0855720-mRNA-1:cds;Parent=Msa0855720-mRNA-1 |
| chr5_4 | CDS | 49580054 | 49580258 | 49580054 | ID=Msa0855720-mRNA-1:cds;Parent=Msa0855720-mRNA-1 |
| chr5_4 | CDS | 49580701 | 49580754 | 49580701 | ID=Msa0855720-mRNA-1:cds;Parent=Msa0855720-mRNA-1 |
| chr5_4 | three_prime_UTR | 49580755 | 49581267 | 49580755 | ID=Msa0855720-mRNA-1:three_prime_utr;Parent=Msa0855720-mRNA-1 |
| chr5_4 | three_prime_UTR | 49581426 | 49581564 | 49581426 | ID=Msa0855720-mRNA-1:three_prime_utr;Parent=Msa0855720-mRNA-1 |
| chr5_4 | three_prime_UTR | 49581677 | 49581756 | 49581677 | ID=Msa0855720-mRNA-1:three_prime_utr;Parent=Msa0855720-mRNA-1 |
| chr5_4 | three_prime_UTR | 49582270 | 49582299 | 49582270 | ID=Msa0855720-mRNA-1:three_prime_utr;Parent=Msa0855720-mRNA-1 |
| chr5_4 | three_prime_UTR | 49582386 | 49582596 | 49582386 | ID=Msa0855720-mRNA-1:three_prime_utr;Parent=Msa0855720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
