AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0296790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296790 MtrunA17_Chr2g0319561 100.000 114 0 0 1 114 1 114 1.32e-82 236
Msa0296790 MtrunA17_Chr4g0024171 87.719 114 13 1 1 114 1 113 2.92e-72 210
Msa0296790 MtrunA17_Chr3g0098971 77.193 114 24 1 1 114 1 112 3.05e-60 180
Msa0296790 MtrunA17_Chr5g0444201 72.973 111 28 1 4 114 2 110 1.47e-55 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296790 AT4G27130.1 86.842 114 14 1 1 114 1 113 1.01e-71 209
Msa0296790 AT5G54760.2 85.965 114 15 1 1 114 1 113 5.04e-71 207
Msa0296790 AT5G54760.4 85.965 114 15 1 1 114 1 113 5.04e-71 207
Msa0296790 AT5G54760.3 85.965 114 15 1 1 114 1 113 5.04e-71 207
Msa0296790 AT5G54760.1 85.965 114 15 1 1 114 1 113 5.04e-71 207
Msa0296790 AT1G54290.1 85.088 114 16 1 1 114 1 113 2.56e-70 206
Msa0296790 AT5G54940.1 74.561 114 27 1 1 114 1 112 3.07e-58 175
Msa0296790 AT5G54940.3 74.561 114 27 1 1 114 1 112 3.07e-58 175
Msa0296790 AT5G54940.2 74.561 114 27 1 1 114 1 112 3.07e-58 175

Find 54 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGTGGGGCATTCTATTT+TGG 0.153254 2_3:+50342889 Msa0296790:five_prime_UTR
TTCGTTGAGATTGCGTTGTT+TGG 0.226356 2_3:-50341807 None:intergenic
AAGAATAGAAACCCTAAAAT+TGG 0.267545 2_3:-50341851 None:intergenic
AATGCTGAGGACGCCGGTGC+TGG 0.285317 2_3:+50343909 Msa0296790:CDS
AATTATAGGTTTGAGCTATC+TGG 0.291587 2_3:+50342867 Msa0296790:intron
AAGGAGCATATTAAAATTCA+TGG 0.292939 2_3:+50345197 Msa0296790:CDS
ACAAGTGTTAAAGTTGTATC+TGG 0.320511 2_3:+50345241 Msa0296790:three_prime_UTR
TTCGCTGCTGTATACGAATA+TGG 0.326573 2_3:-50343950 None:intergenic
ATTCATTACCTGGACTAAAA+AGG 0.327921 2_3:-50344219 None:intergenic
ACAGTTGTGATGCAGTATTA+TGG 0.339469 2_3:+50345327 Msa0296790:three_prime_UTR
TCGTTGAGATTGCGTTGTTT+GGG 0.354219 2_3:-50341806 None:intergenic
TATGTATCAAAGGAGTTTAA+AGG 0.362449 2_3:+50345384 Msa0296790:three_prime_UTR
CCTGTCCTTGCTCTGGGTCC+TGG 0.375764 2_3:-50344079 None:intergenic
GGCATCTGAAATCTTGAATC+TGG 0.406006 2_3:-50345482 None:intergenic
CATTTAACATTTCAGATGCT+TGG 0.412230 2_3:+50345422 Msa0296790:three_prime_UTR
AGACATACCTGTCCTTGCTC+TGG 0.415595 2_3:-50344086 None:intergenic
TACAACAAAACTCCTTCTTA+AGG 0.416659 2_3:-50344043 None:intergenic
TATCTGGCTCATTTCGAGTT+GGG 0.430050 2_3:+50345257 Msa0296790:three_prime_UTR
ACGCATCGAAACCCTAATCT+AGG 0.432304 2_3:+50341894 Msa0296790:five_prime_UTR
ATTCATGGTTTCTGAGCAGC+TGG 0.441134 2_3:+50345212 Msa0296790:exon
TTGTGGAATTTCTTGTGGTC+TGG 0.441805 2_3:+50345293 Msa0296790:three_prime_UTR
CGAAACCCTAATCTAGGATC+AGG 0.444875 2_3:+50341900 Msa0296790:five_prime_UTR
GATTTCAGATGCCGTTGGCT+TGG 0.445423 2_3:+50345492 Msa0296790:three_prime_UTR
GTTTGAGCTATCTGGTTGGT+GGG 0.452122 2_3:+50342875 Msa0296790:five_prime_UTR
GACATACCTGTCCTTGCTCT+GGG 0.463686 2_3:-50344085 None:intergenic
TGAATTCTTTCTTCAATCCC+TGG 0.465760 2_3:-50343998 None:intergenic
AGAAACCCTAAAATTGGATA+AGG 0.468111 2_3:-50341845 None:intergenic
GGTTTGAGCTATCTGGTTGG+TGG 0.470349 2_3:+50342874 Msa0296790:intron
GTGTAGGTTATTCAACTTCA+AGG 0.470369 2_3:+50344173 Msa0296790:intron
TTGTAATGGTACAGTTGTCC+AGG 0.470439 2_3:+50344061 Msa0296790:CDS
ATGCTGAGGACGCCGGTGCT+GGG 0.477491 2_3:+50343910 Msa0296790:CDS
TCAGCATTTGCCTCAGCAAA+AGG 0.478903 2_3:-50343894 None:intergenic
ATTCGTATACAGCAGCGAAA+TGG 0.491023 2_3:+50343954 Msa0296790:CDS
ATGGAATTTATGACATTATG+TGG 0.492829 2_3:+50345346 Msa0296790:three_prime_UTR
TGATTGATTAACAATTAAAG+AGG 0.494724 2_3:+50345524 Msa0296790:three_prime_UTR
GTATCTGGCTCATTTCGAGT+TGG 0.505995 2_3:+50345256 Msa0296790:three_prime_UTR
CGCCGGTGCTGGGTCATCAA+AGG 0.522725 2_3:+50343920 Msa0296790:CDS
TGTGATTGTGGAATTTCTTG+TGG 0.543118 2_3:+50345288 Msa0296790:three_prime_UTR
ACAGGCTGGAATCGTGAAGA+AGG 0.545416 2_3:+50345178 Msa0296790:intron
TTCAAGATTTCAGATGCCGT+TGG 0.546280 2_3:+50345487 Msa0296790:three_prime_UTR
TTTGAGCTATCTGGTTGGTG+GGG 0.548016 2_3:+50342876 Msa0296790:five_prime_UTR
AAAAGCTTGACAACTGTCCA+GGG 0.558576 2_3:+50343981 Msa0296790:CDS
GCTTCAATAATATGTATCAA+AGG 0.574990 2_3:+50345374 Msa0296790:three_prime_UTR
TTCAACTTCAAGGCGATCAG+AGG 0.577444 2_3:+50344183 Msa0296790:CDS
GAGGCAAATGCTGAGGACGC+CGG 0.578099 2_3:+50343903 Msa0296790:CDS
CTCCTTTGATGACCCAGCAC+CGG 0.583753 2_3:-50343922 None:intergenic
GATTCTGAAAGACCTTAAGA+AGG 0.584832 2_3:+50344031 Msa0296790:CDS
CCAGGACCCAGAGCAAGGAC+AGG 0.587475 2_3:+50344079 Msa0296790:CDS
TGGGTATATATATGTGATTG+TGG 0.594702 2_3:+50345276 Msa0296790:three_prime_UTR
CAAAACTTGTTCCAAGCCAA+CGG 0.601487 2_3:-50345503 None:intergenic
GCACAAATTCCTACTGCCTA+CGG 0.609588 2_3:+50342939 Msa0296790:CDS
ATAGGTTTGAGCTATCTGGT+TGG 0.616390 2_3:+50342871 Msa0296790:intron
GTTGTCCAGGACCCAGAGCA+AGG 0.630590 2_3:+50344074 Msa0296790:CDS
TCCAACTTACCGTAGGCAGT+AGG 0.690363 2_3:-50342948 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTGTAAATGAAATTT+GGG + chr2_3:50342334-50342353 Msa0296790:intron 10.0%
!!! TTTGAATTTTTATTATCTTT+AGG + chr2_3:50343137-50343156 Msa0296790:intron 10.0%
!! GTTATAAGTAAAAAAAAATA+GGG - chr2_3:50343373-50343392 None:intergenic 10.0%
!! GTTATATTGTAAATGAAATT+TGG + chr2_3:50342333-50342352 Msa0296790:intron 15.0%
!! TATATTGTAAATGAAATTTG+GGG + chr2_3:50342335-50342354 Msa0296790:intron 15.0%
!!! ATAATTTGTGTATCAATTTT+AGG + chr2_3:50342376-50342395 Msa0296790:intron 15.0%
!! AATAAGAAACAATTAATTCA+CGG - chr2_3:50342415-50342434 None:intergenic 15.0%
!! AAGATATTGTAAATGAAATT+TGG + chr2_3:50342438-50342457 Msa0296790:intron 15.0%
!! AGATATTGTAAATGAAATTT+GGG + chr2_3:50342439-50342458 Msa0296790:intron 15.0%
!!! TTGTAAATGTAAATGAATTT+TGG + chr2_3:50342549-50342568 Msa0296790:intron 15.0%
!!! TGTAAATGTAAATGAATTTT+GGG + chr2_3:50342550-50342569 Msa0296790:intron 15.0%
!!! AATGTTTTGATTCTAATTAT+AGG + chr2_3:50342853-50342872 Msa0296790:intron 15.0%
!! CGTTATAAGTAAAAAAAAAT+AGG - chr2_3:50343374-50343393 None:intergenic 15.0%
!!! TTTTCTAAAATAGTTTTTTC+TGG + chr2_3:50343502-50343521 Msa0296790:intron 15.0%
!!! TTTCTAAAATAGTTTTTTCT+GGG + chr2_3:50343503-50343522 Msa0296790:intron 15.0%
!!! GTTTTTAATGTTTATACTTT+GGG + chr2_3:50343550-50343569 Msa0296790:intron 15.0%
!!! CTTCAAATAACATTTTTTTA+TGG + chr2_3:50344151-50344170 Msa0296790:intron 15.0%
!! AGAAAATATCAAAAGTAAAA+CGG - chr2_3:50344350-50344369 None:intergenic 15.0%
!! TAAACATAAAATAATGTCAA+AGG - chr2_3:50344577-50344596 None:intergenic 15.0%
!! TTTACCCATAAATTTATATT+TGG + chr2_3:50344870-50344889 Msa0296790:intron 15.0%
!! AAATTTCGATTTAGAGAAAA+AGG - chr2_3:50341944-50341963 None:intergenic 20.0%
!!! AATTTTCGCGTTTTAATTTT+AGG + chr2_3:50341959-50341978 Msa0296790:intron 20.0%
!!! ATTTTCGCGTTTTAATTTTA+GGG + chr2_3:50341960-50341979 Msa0296790:intron 20.0%
!!! TTCAATTTGCCTAAATTTTA+AGG + chr2_3:50342009-50342028 Msa0296790:intron 20.0%
!!! TCAATTTGCCTAAATTTTAA+GGG + chr2_3:50342010-50342029 Msa0296790:intron 20.0%
!! AATAAAACCCCTTAAAATTT+AGG - chr2_3:50342021-50342040 None:intergenic 20.0%
!!! AAATTTTAAGGGGTTTTATT+TGG + chr2_3:50342021-50342040 Msa0296790:intron 20.0%
!!! TTGTTAATTTTGTGAAGTTT+CGG + chr2_3:50342097-50342116 Msa0296790:intron 20.0%
!!! AGCTGTATATTTGAATTTTT+TGG + chr2_3:50342206-50342225 Msa0296790:intron 20.0%
!!! GCTGTATATTTGAATTTTTT+GGG + chr2_3:50342207-50342226 Msa0296790:intron 20.0%
!!! TTTTTTGGGTATCAATTTTT+AGG + chr2_3:50342221-50342240 Msa0296790:intron 20.0%
!! AAATTGATACCCAAAAAATT+GGG - chr2_3:50342219-50342238 None:intergenic 20.0%
!! ATATTGTAAATGAAATTTGG+GGG + chr2_3:50342336-50342355 Msa0296790:intron 20.0%
!! GATATTGTAAATGAAATTTG+GGG + chr2_3:50342440-50342459 Msa0296790:intron 20.0%
!! ATATTGTAAATGAAATTTGG+GGG + chr2_3:50342336-50342355 Msa0296790:intron 20.0%
!! TTGTAAAGAAATATTGTGAA+TGG + chr2_3:50342471-50342490 Msa0296790:intron 20.0%
!!! AATATTGTGAATGGATTTTT+AGG + chr2_3:50342480-50342499 Msa0296790:intron 20.0%
!!! GTAAATGTAAATGAATTTTG+GGG + chr2_3:50342551-50342570 Msa0296790:intron 20.0%
!!! TAAATGTAAATGAATTTTGG+GGG + chr2_3:50342552-50342571 Msa0296790:intron 20.0%
!!! GATAGATATATTGTTTTTGT+TGG + chr2_3:50342758-50342777 Msa0296790:intron 20.0%
!! CTGAATTATAATAACAATCT+CGG - chr2_3:50342831-50342850 None:intergenic 20.0%
!!! ATATTGCTTTTACTTTTACT+TGG + chr2_3:50343335-50343354 Msa0296790:intron 20.0%
!!! TTCTAAAATAGTTTTTTCTG+GGG + chr2_3:50343504-50343523 Msa0296790:intron 20.0%
!!! GGTTTTTAATGTTTATACTT+TGG + chr2_3:50343549-50343568 Msa0296790:intron 20.0%
!!! TTTGATCTGAAATAGTATTT+TGG + chr2_3:50343645-50343664 Msa0296790:intron 20.0%
!!! TTGATCTGAAATAGTATTTT+GGG + chr2_3:50343646-50343665 Msa0296790:intron 20.0%
!!! AAATTGGATTTTTAAAGCTT+AGG + chr2_3:50343685-50343704 Msa0296790:intron 20.0%
!!! ATAACATTTTTTTATGGTGT+AGG + chr2_3:50344157-50344176 Msa0296790:intron 20.0%
!! GTAAAACGGAAAAATAAAAA+GGG - chr2_3:50344336-50344355 None:intergenic 20.0%
!! AGTAAAACGGAAAAATAAAA+AGG - chr2_3:50344337-50344356 None:intergenic 20.0%
!!! TTTACTTTTGATATTTTCTG+TGG + chr2_3:50344351-50344370 Msa0296790:intron 20.0%
!!! AAAAAGAAGTCTGTTTTTAA+AGG + chr2_3:50344442-50344461 Msa0296790:intron 20.0%
!!! GTAAAAATAGTTGATATTCT+AGG - chr2_3:50344669-50344688 None:intergenic 20.0%
!!! ATCAACTATTTTTACTAAAC+AGG + chr2_3:50344674-50344693 Msa0296790:intron 20.0%
!!! TCAACTATTTTTACTAAACA+GGG + chr2_3:50344675-50344694 Msa0296790:intron 20.0%
!! TCCACCAAATATAAATTTAT+GGG - chr2_3:50344877-50344896 None:intergenic 20.0%
!! ATCCACCAAATATAAATTTA+TGG - chr2_3:50344878-50344897 None:intergenic 20.0%
!! TGATTGATTAACAATTAAAG+AGG + chr2_3:50345524-50345543 Msa0296790:three_prime_UTR 20.0%
! AAGAATAGAAACCCTAAAAT+TGG - chr2_3:50341854-50341873 None:intergenic 25.0%
! GGCAAATTGAAATCAAAATT+AGG - chr2_3:50342000-50342019 None:intergenic 25.0%
!! CAATTTGCCTAAATTTTAAG+GGG + chr2_3:50342011-50342030 Msa0296790:intron 25.0%
! CTAAATATCAACAAGAGAAA+CGG - chr2_3:50342073-50342092 None:intergenic 25.0%
!! TGTTAATTTTGTGAAGTTTC+GGG + chr2_3:50342098-50342117 Msa0296790:intron 25.0%
! GAAATTGATACCCAAAAAAT+TGG - chr2_3:50342272-50342291 None:intergenic 25.0%
!!! TTTTTTGGGTATCAATTTCT+AGG + chr2_3:50342273-50342292 Msa0296790:intron 25.0%
!!! TATTGTTTTTGTTGGATTTG+TGG + chr2_3:50342766-50342785 Msa0296790:intron 25.0%
! ATAGAAGAATTTCTCATTTC+TGG - chr2_3:50343244-50343263 None:intergenic 25.0%
! TAAAAGCAATATCAGTAAGA+AGG - chr2_3:50343327-50343346 None:intergenic 25.0%
! AAAAAATTCTGTGTGATTCT+TGG - chr2_3:50343485-50343504 None:intergenic 25.0%
! TTAAGCATCTTGTTCAATAA+TGG - chr2_3:50343601-50343620 None:intergenic 25.0%
! TCAAAGTTATGTACAATGAT+TGG - chr2_3:50343630-50343649 None:intergenic 25.0%
!!! TGATCTGAAATAGTATTTTG+GGG + chr2_3:50343647-50343666 Msa0296790:intron 25.0%
! AGATGAAGAATAGAAATAGA+TGG + chr2_3:50343776-50343795 Msa0296790:intron 25.0%
!! AATGTTATTTGAAGCAACAA+GGG - chr2_3:50344145-50344164 None:intergenic 25.0%
!! AAATGTTATTTGAAGCAACA+AGG - chr2_3:50344146-50344165 None:intergenic 25.0%
! TTAATGAAAATAGAGCTGTT+TGG + chr2_3:50344501-50344520 Msa0296790:intron 25.0%
! TTATTTGAATTAAGCATAGC+AGG - chr2_3:50344540-50344559 None:intergenic 25.0%
! ACCCATAAATTTATATTTGG+TGG + chr2_3:50344873-50344892 Msa0296790:intron 25.0%
! TATTCATGTCATTCATCATA+TGG + chr2_3:50345024-50345043 Msa0296790:intron 25.0%
!! AAGGAGCATATTAAAATTCA+TGG + chr2_3:50345197-50345216 Msa0296790:CDS 25.0%
! ATGGAATTTATGACATTATG+TGG + chr2_3:50345346-50345365 Msa0296790:three_prime_UTR 25.0%
! GCTTCAATAATATGTATCAA+AGG + chr2_3:50345374-50345393 Msa0296790:three_prime_UTR 25.0%
! TATGTATCAAAGGAGTTTAA+AGG + chr2_3:50345384-50345403 Msa0296790:three_prime_UTR 25.0%
! ATCGTTCCTTATCCAATTTT+AGG + chr2_3:50341839-50341858 Msa0296790:five_prime_UTR 30.0%
! TCGTTCCTTATCCAATTTTA+GGG + chr2_3:50341840-50341859 Msa0296790:five_prime_UTR 30.0%
AGAAACCCTAAAATTGGATA+AGG - chr2_3:50341848-50341867 None:intergenic 30.0%
! TTTTACCTGATCCTAGATTA+GGG - chr2_3:50341908-50341927 None:intergenic 30.0%
! ATTTTACCTGATCCTAGATT+AGG - chr2_3:50341909-50341928 None:intergenic 30.0%
! ATTTTTGAACGAGTAAGTCT+TGG + chr2_3:50342132-50342151 Msa0296790:intron 30.0%
! TTTTTGAACGAGTAAGTCTT+GGG + chr2_3:50342133-50342152 Msa0296790:intron 30.0%
! AAGCTTTTATCTTTGAATCG+TGG + chr2_3:50342176-50342195 Msa0296790:intron 30.0%
!!! GGTATCAATTTTTAGGTGTT+TGG + chr2_3:50342228-50342247 Msa0296790:intron 30.0%
! TTTAGGTGTTTGGTTTAACA+TGG + chr2_3:50342238-50342257 Msa0296790:intron 30.0%
!!! TGGTGTAAATCCCAATTTTT+TGG + chr2_3:50342258-50342277 Msa0296790:intron 30.0%
!!! GGTGTAAATCCCAATTTTTT+GGG + chr2_3:50342259-50342278 Msa0296790:intron 30.0%
! TTAAAAGCACAGCTAAACAT+GGG - chr2_3:50342627-50342646 None:intergenic 30.0%
GAAATTATCCATGCTTATTG+TGG + chr2_3:50342690-50342709 Msa0296790:intron 30.0%
AATTATAGGTTTGAGCTATC+TGG + chr2_3:50342867-50342886 Msa0296790:intron 30.0%
TCAATTATACTGTGTACTGT+TGG + chr2_3:50343065-50343084 Msa0296790:intron 30.0%
CAATTATACTGTGTACTGTT+GGG + chr2_3:50343066-50343085 Msa0296790:intron 30.0%
GAATTTACTAGTCAATTGTC+AGG - chr2_3:50343178-50343197 None:intergenic 30.0%
ATATGATATATGACTCCTGT+GGG + chr2_3:50343849-50343868 Msa0296790:intron 30.0%
! AATTTTAGATCCTTTTGCTG+AGG + chr2_3:50343884-50343903 Msa0296790:intron 30.0%
TACAACAAAACTCCTTCTTA+AGG - chr2_3:50344046-50344065 None:intergenic 30.0%
!!! AAGAAGGAGTTTTGTTGTAA+TGG + chr2_3:50344047-50344066 Msa0296790:CDS 30.0%
! ATGTTATTTGAAGCAACAAG+GGG - chr2_3:50344144-50344163 None:intergenic 30.0%
ATTCATTACCTGGACTAAAA+AGG - chr2_3:50344222-50344241 None:intergenic 30.0%
AATGAATGACTTCACATCTT+TGG + chr2_3:50344235-50344254 Msa0296790:intron 30.0%
!! ATAAAAAGGGTACTTAACCA+GGG - chr2_3:50344323-50344342 None:intergenic 30.0%
!! AATAAAAAGGGTACTTAACC+AGG - chr2_3:50344324-50344343 None:intergenic 30.0%
TATCTAAATCCGTTCTATAG+AGG - chr2_3:50344906-50344925 None:intergenic 30.0%
GATTTAGATACGTAAATCAC+TGG + chr2_3:50344916-50344935 Msa0296790:intron 30.0%
AGAATATAACAGATCGTTGT+AGG - chr2_3:50344950-50344969 None:intergenic 30.0%
AATAAACGTTTGTCACTACA+TGG - chr2_3:50345008-50345027 None:intergenic 30.0%
ACAAGTGTTAAAGTTGTATC+TGG + chr2_3:50345241-50345260 Msa0296790:three_prime_UTR 30.0%
TGGGTATATATATGTGATTG+TGG + chr2_3:50345276-50345295 Msa0296790:three_prime_UTR 30.0%
CATTTAACATTTCAGATGCT+TGG + chr2_3:50345422-50345441 Msa0296790:three_prime_UTR 30.0%
!! TGAATGGATTTTTAGGCATG+TGG + chr2_3:50342487-50342506 Msa0296790:intron 35.0%
! CTTAAAAGCACAGCTAAACA+TGG - chr2_3:50342628-50342647 None:intergenic 35.0%
!! GTGCTTTTAAGAGTTTGTGA+CGG + chr2_3:50342637-50342656 Msa0296790:intron 35.0%
!! TGCTTTTAAGAGTTTGTGAC+GGG + chr2_3:50342638-50342657 Msa0296790:intron 35.0%
TTATCCATGCTTATTGTGGT+TGG + chr2_3:50342694-50342713 Msa0296790:intron 35.0%
TATCCATGCTTATTGTGGTT+GGG + chr2_3:50342695-50342714 Msa0296790:intron 35.0%
TTCATGATATGCAGTCATTC+TGG + chr2_3:50343022-50343041 Msa0296790:intron 35.0%
! ATATGCAGTCATTCTGGAAA+GGG + chr2_3:50343028-50343047 Msa0296790:intron 35.0%
!! AATCTGAGACAGCATTTTCA+AGG - chr2_3:50343094-50343113 None:intergenic 35.0%
!! CATTTCTGGAGTTTAGTTGA+AGG - chr2_3:50343299-50343318 None:intergenic 35.0%
! TGCTTAACGTGGTTTAAGAT+TGG + chr2_3:50343527-50343546 Msa0296790:intron 35.0%
! GCTTAACGTGGTTTAAGATT+GGG + chr2_3:50343528-50343547 Msa0296790:intron 35.0%
!!! AATAGTATTTTGGGGTCTTG+AGG + chr2_3:50343655-50343674 Msa0296790:intron 35.0%
! GTCTTGAGGTGGTTTAAAAT+TGG + chr2_3:50343669-50343688 Msa0296790:intron 35.0%
TAGGATCTTAACGTTTGTGA+AGG + chr2_3:50343704-50343723 Msa0296790:intron 35.0%
AGGATCTTAACGTTTGTGAA+GGG + chr2_3:50343705-50343724 Msa0296790:intron 35.0%
TACATAATGAATGCTGTGTG+AGG - chr2_3:50343757-50343776 None:intergenic 35.0%
GATATGATATATGACTCCTG+TGG + chr2_3:50343848-50343867 Msa0296790:intron 35.0%
TGAATTCTTTCTTCAATCCC+TGG - chr2_3:50344001-50344020 None:intergenic 35.0%
! GATTCTGAAAGACCTTAAGA+AGG + chr2_3:50344031-50344050 Msa0296790:CDS 35.0%
GTGTAGGTTATTCAACTTCA+AGG + chr2_3:50344173-50344192 Msa0296790:intron 35.0%
ATGTGAAGTCATTCATTACC+TGG - chr2_3:50344232-50344251 None:intergenic 35.0%
AAGGCATATGCTTAGCTTAT+TGG + chr2_3:50344461-50344480 Msa0296790:intron 35.0%
! TTTGTTAGCTTCTCAGCAAT+AGG + chr2_3:50344630-50344649 Msa0296790:intron 35.0%
!!! TGTGTTTTTTTCCTCCTGAT+TGG + chr2_3:50344704-50344723 Msa0296790:intron 35.0%
!!! GTGTTTTTTTCCTCCTGATT+GGG + chr2_3:50344705-50344724 Msa0296790:intron 35.0%
TATTCATGCCTTTCATTGCA+TGG + chr2_3:50345067-50345086 Msa0296790:intron 35.0%
! TCAGTTTTCCATGCAATGAA+AGG - chr2_3:50345078-50345097 None:intergenic 35.0%
TTCAAATTCACAAGTGCAGA+GGG - chr2_3:50345159-50345178 None:intergenic 35.0%
TGTGATTGTGGAATTTCTTG+TGG + chr2_3:50345288-50345307 Msa0296790:three_prime_UTR 35.0%
ACAGTTGTGATGCAGTATTA+TGG + chr2_3:50345327-50345346 Msa0296790:three_prime_UTR 35.0%
!! GGTTTTATGACCTAAAACAC+TGG + chr2_3:50345545-50345564 Msa0296790:three_prime_UTR 35.0%
TCGTTGAGATTGCGTTGTTT+GGG - chr2_3:50341809-50341828 None:intergenic 40.0%
TTCGTTGAGATTGCGTTGTT+TGG - chr2_3:50341810-50341829 None:intergenic 40.0%
ATAGGTTTGAGCTATCTGGT+TGG + chr2_3:50342871-50342890 Msa0296790:intron 40.0%
ATAGAGTTCCAACTTACCGT+AGG - chr2_3:50342958-50342977 None:intergenic 40.0%
! GATATGCAGTCATTCTGGAA+AGG + chr2_3:50343027-50343046 Msa0296790:intron 40.0%
GTAAGAAGGCAACTCATTTC+TGG - chr2_3:50343313-50343332 None:intergenic 40.0%
!! TTGGGTTTTATCGTGTGTGA+AGG + chr2_3:50343568-50343587 Msa0296790:intron 40.0%
TTCGCTGCTGTATACGAATA+TGG - chr2_3:50343953-50343972 None:intergenic 40.0%
ATTCGTATACAGCAGCGAAA+TGG + chr2_3:50343954-50343973 Msa0296790:CDS 40.0%
AAAAAGCTTGACAACTGTCC+AGG + chr2_3:50343980-50343999 Msa0296790:CDS 40.0%
AAAAGCTTGACAACTGTCCA+GGG + chr2_3:50343981-50344000 Msa0296790:CDS 40.0%
TTGTAATGGTACAGTTGTCC+AGG + chr2_3:50344061-50344080 Msa0296790:CDS 40.0%
!! TGTGTCTACCTTTTTAGTCC+AGG + chr2_3:50344211-50344230 Msa0296790:CDS 40.0%
TACTTAACCAGGGAAACAGA+TGG - chr2_3:50344313-50344332 None:intergenic 40.0%
! TGTCTGAGATCAAGTTTCTC+TGG + chr2_3:50344394-50344413 Msa0296790:intron 40.0%
AGGAGGAAAAAAACACACTG+AGG - chr2_3:50344701-50344720 None:intergenic 40.0%
GTACAAGATCATTCCCAATC+AGG - chr2_3:50344721-50344740 None:intergenic 40.0%
ACTTATAGAGTTGCCTTTCC+CGG + chr2_3:50344830-50344849 Msa0296790:intron 40.0%
GGATGTATGCCTCTATAGAA+CGG + chr2_3:50344894-50344913 Msa0296790:intron 40.0%
GTTCAAATTCACAAGTGCAG+AGG - chr2_3:50345160-50345179 None:intergenic 40.0%
CTGCACTTGTGAATTTGAAC+AGG + chr2_3:50345160-50345179 Msa0296790:intron 40.0%
ACTTGTGAATTTGAACAGGC+TGG + chr2_3:50345164-50345183 Msa0296790:intron 40.0%
!! TATCTGGCTCATTTCGAGTT+GGG + chr2_3:50345257-50345276 Msa0296790:three_prime_UTR 40.0%
TTGTGGAATTTCTTGTGGTC+TGG + chr2_3:50345293-50345312 Msa0296790:three_prime_UTR 40.0%
! GGCATCTGAAATCTTGAATC+TGG - chr2_3:50345485-50345504 None:intergenic 40.0%
TTCAAGATTTCAGATGCCGT+TGG + chr2_3:50345487-50345506 Msa0296790:three_prime_UTR 40.0%
! CAAAACTTGTTCCAAGCCAA+CGG - chr2_3:50345506-50345525 None:intergenic 40.0%
ACGCATCGAAACCCTAATCT+AGG + chr2_3:50341894-50341913 Msa0296790:five_prime_UTR 45.0%
! CGAAACCCTAATCTAGGATC+AGG + chr2_3:50341900-50341919 Msa0296790:five_prime_UTR 45.0%
TTGCCCAACCACAATAAGCA+TGG - chr2_3:50342701-50342720 None:intergenic 45.0%
ACATTCCCCACCATGCTTAT+CGG + chr2_3:50342730-50342749 Msa0296790:intron 45.0%
GTTTGAGCTATCTGGTTGGT+GGG + chr2_3:50342875-50342894 Msa0296790:five_prime_UTR 45.0%
! TTTGAGCTATCTGGTTGGTG+GGG + chr2_3:50342876-50342895 Msa0296790:five_prime_UTR 45.0%
!! GTTGGTGGGGCATTCTATTT+TGG + chr2_3:50342889-50342908 Msa0296790:five_prime_UTR 45.0%
GCACAAATTCCTACTGCCTA+CGG + chr2_3:50342939-50342958 Msa0296790:CDS 45.0%
GACAGACAACACGCATCAAT+AGG - chr2_3:50342987-50343006 None:intergenic 45.0%
!!! TTTTTCTGGGGTGCTTAACG+TGG + chr2_3:50343516-50343535 Msa0296790:intron 45.0%
!!! AGTATTTTGGGGTCTTGAGG+TGG + chr2_3:50343658-50343677 Msa0296790:intron 45.0%
TCAGCATTTGCCTCAGCAAA+AGG - chr2_3:50343897-50343916 None:intergenic 45.0%
! TTTTGCTGAGGCAAATGCTG+AGG + chr2_3:50343896-50343915 Msa0296790:CDS 45.0%
TTCAACTTCAAGGCGATCAG+AGG + chr2_3:50344183-50344202 Msa0296790:CDS 45.0%
GTGGCGTAATTTGATCTGAG+TGG + chr2_3:50344370-50344389 Msa0296790:intron 45.0%
CAAGATCATTCCCAATCAGG+AGG - chr2_3:50344718-50344737 None:intergenic 45.0%
ATAAGTGCCAACCTGCTCAA+AGG - chr2_3:50344816-50344835 None:intergenic 45.0%
CTTATAGAGTTGCCTTTCCC+GGG + chr2_3:50344831-50344850 Msa0296790:intron 45.0%
AAGACTGTTTACCCAAGTCC+CGG - chr2_3:50344852-50344871 None:intergenic 45.0%
TTCACAAGTGCAGAGGGATA+AGG - chr2_3:50345153-50345172 None:intergenic 45.0%
ATTCATGGTTTCTGAGCAGC+TGG + chr2_3:50345212-50345231 Msa0296790:exon 45.0%
! GTATCTGGCTCATTTCGAGT+TGG + chr2_3:50345256-50345275 Msa0296790:three_prime_UTR 45.0%
!! TTAAGAGTTTGTGACGGGCG+TGG + chr2_3:50342643-50342662 Msa0296790:intron 50.0%
CATTCCCCACCATGCTTATC+GGG + chr2_3:50342731-50342750 Msa0296790:intron 50.0%
ATTCCCCACCATGCTTATCG+GGG + chr2_3:50342732-50342751 Msa0296790:intron 50.0%
GGTTTGAGCTATCTGGTTGG+TGG + chr2_3:50342874-50342893 Msa0296790:intron 50.0%
TCCTACTGCCTACGGTAAGT+TGG + chr2_3:50342947-50342966 Msa0296790:intron 50.0%
TCCAACTTACCGTAGGCAGT+AGG - chr2_3:50342951-50342970 None:intergenic 50.0%
TATGACTCCTGTGGGATGTG+TGG + chr2_3:50343857-50343876 Msa0296790:intron 50.0%
ATTGTTGCCACACATCCCAC+AGG - chr2_3:50343867-50343886 None:intergenic 50.0%
GACATACCTGTCCTTGCTCT+GGG - chr2_3:50344088-50344107 None:intergenic 50.0%
AGACATACCTGTCCTTGCTC+TGG - chr2_3:50344089-50344108 None:intergenic 50.0%
CAGGGAAACAGATGGATCTC+AGG - chr2_3:50344305-50344324 None:intergenic 50.0%
CTGAGATCCATCTGTTTCCC+TGG + chr2_3:50344303-50344322 Msa0296790:intron 50.0%
AGACTGTTTACCCAAGTCCC+GGG - chr2_3:50344851-50344870 None:intergenic 50.0%
ACAGGCTGGAATCGTGAAGA+AGG + chr2_3:50345178-50345197 Msa0296790:intron 50.0%
! GATTTCAGATGCCGTTGGCT+TGG + chr2_3:50345492-50345511 Msa0296790:three_prime_UTR 50.0%
TTCCCCACCATGCTTATCGG+GGG + chr2_3:50342733-50342752 Msa0296790:intron 55.0%
CTATCAGCCCCCGATAAGCA+TGG - chr2_3:50342743-50342762 None:intergenic 55.0%
! CTCCTTTGATGACCCAGCAC+CGG - chr2_3:50343925-50343944 None:intergenic 55.0%
TTCGCACCAGTCCTTTGAGC+AGG + chr2_3:50344802-50344821 Msa0296790:intron 55.0%
CACCAGTCCTTTGAGCAGGT+TGG + chr2_3:50344806-50344825 Msa0296790:intron 55.0%
TGCCAACCTGCTCAAAGGAC+TGG - chr2_3:50344811-50344830 None:intergenic 55.0%
AGTTGCCTTTCCCGGGACTT+GGG + chr2_3:50344838-50344857 Msa0296790:intron 55.0%
GTTTACCCAAGTCCCGGGAA+AGG - chr2_3:50344846-50344865 None:intergenic 55.0%
AGCCCCCGATAAGCATGGTG+GGG - chr2_3:50342738-50342757 None:intergenic 60.0%
CAGCCCCCGATAAGCATGGT+GGG - chr2_3:50342739-50342758 None:intergenic 60.0%
TCAGCCCCCGATAAGCATGG+TGG - chr2_3:50342740-50342759 None:intergenic 60.0%
GAGGCAAATGCTGAGGACGC+CGG + chr2_3:50343903-50343922 Msa0296790:CDS 60.0%
GTTGTCCAGGACCCAGAGCA+AGG + chr2_3:50344074-50344093 Msa0296790:CDS 60.0%
GAGTTGCCTTTCCCGGGACT+TGG + chr2_3:50344837-50344856 Msa0296790:intron 60.0%
AATGCTGAGGACGCCGGTGC+TGG + chr2_3:50343909-50343928 Msa0296790:CDS 65.0%
ATGCTGAGGACGCCGGTGCT+GGG + chr2_3:50343910-50343929 Msa0296790:CDS 65.0%
! CGCCGGTGCTGGGTCATCAA+AGG + chr2_3:50343920-50343939 Msa0296790:CDS 65.0%
! CCTGTCCTTGCTCTGGGTCC+TGG - chr2_3:50344082-50344101 None:intergenic 65.0%
CCAGGACCCAGAGCAAGGAC+AGG + chr2_3:50344079-50344098 Msa0296790:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 50341806 50345574 50341806 ID=Msa0296790;Name=Msa0296790
chr2_3 mRNA 50341806 50345574 50341806 ID=Msa0296790-mRNA-1;Parent=Msa0296790;Name=Msa0296790-mRNA-1;_AED=0.07;_eAED=0.07;_QI=165|1|1|1|0.25|0.4|5|348|114
chr2_3 exon 50341806 50341921 50341806 ID=Msa0296790-mRNA-1:exon:15803;Parent=Msa0296790-mRNA-1
chr2_3 exon 50342875 50342960 50342875 ID=Msa0296790-mRNA-1:exon:15804;Parent=Msa0296790-mRNA-1
chr2_3 exon 50343892 50344100 50343892 ID=Msa0296790-mRNA-1:exon:15805;Parent=Msa0296790-mRNA-1
chr2_3 exon 50344179 50344232 50344179 ID=Msa0296790-mRNA-1:exon:15806;Parent=Msa0296790-mRNA-1
chr2_3 exon 50345182 50345574 50345182 ID=Msa0296790-mRNA-1:exon:15807;Parent=Msa0296790-mRNA-1
chr2_3 five_prime_UTR 50341806 50341921 50341806 ID=Msa0296790-mRNA-1:five_prime_utr;Parent=Msa0296790-mRNA-1
chr2_3 five_prime_UTR 50342875 50342923 50342875 ID=Msa0296790-mRNA-1:five_prime_utr;Parent=Msa0296790-mRNA-1
chr2_3 CDS 50342924 50342960 50342924 ID=Msa0296790-mRNA-1:cds;Parent=Msa0296790-mRNA-1
chr2_3 CDS 50343892 50344100 50343892 ID=Msa0296790-mRNA-1:cds;Parent=Msa0296790-mRNA-1
chr2_3 CDS 50344179 50344232 50344179 ID=Msa0296790-mRNA-1:cds;Parent=Msa0296790-mRNA-1
chr2_3 CDS 50345182 50345226 50345182 ID=Msa0296790-mRNA-1:cds;Parent=Msa0296790-mRNA-1
chr2_3 three_prime_UTR 50345227 50345574 50345227 ID=Msa0296790-mRNA-1:three_prime_utr;Parent=Msa0296790-mRNA-1
Gene Sequence

>Msa0296790

ATGTCTGAATTAGACGCACAAATTCCTACTGCCTACGATCCTTTTGCTGAGGCAAATGCTGAGGACGCCGGTGCTGGGTCATCAAAGGAGTACGTCCATATTCGTATACAGCAGCGAAATGGTAGAAAAAGCTTGACAACTGTCCAGGGATTGAAGAAAGAATTCAGTTACAACAAGATTCTGAAAGACCTTAAGAAGGAGTTTTGTTGTAATGGTACAGTTGTCCAGGACCCAGAGCAAGGACAGGTTATTCAACTTCAAGGCGATCAGAGGAAAAATGTGTCTACCTTTTTAGTCCAGGCTGGAATCGTGAAGAAGGAGCATATTAAAATTCATGGTTTCTGA

Protein sequence

>Msa0296790

MSELDAQIPTAYDPFAEANAEDAGAGSSKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPEQGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKIHGF*